Query 031892
Match_columns 151
No_of_seqs 50 out of 52
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 20.4 34 0.0012 19.6 0.9 11 33-43 4-14 (29)
2 3fbi_A Mediator of RNA polymer 16.3 44 0.0015 23.3 0.8 11 34-44 8-18 (84)
3 1g2b_A Spectrin alpha chain; c 15.1 26 0.00088 21.4 -0.6 9 141-149 53-61 (62)
4 2bn5_B U1 small nuclear ribonu 13.9 83 0.0028 17.4 1.4 13 39-51 9-22 (26)
5 3u28_C H/ACA ribonucleoprotein 9.0 70 0.0024 23.6 -0.0 10 17-26 67-76 (114)
6 1rr7_A Middle operon regulator 8.8 82 0.0028 22.8 0.3 14 99-112 62-75 (129)
7 1i1j_A Melanoma derived growth 8.8 53 0.0018 23.0 -0.7 7 143-149 59-65 (108)
8 2jmc_A Spectrin alpha chain, b 8.2 94 0.0032 19.7 0.4 7 142-148 24-30 (77)
9 1awj_A ITK; transferase, regul 8.0 1.1E+02 0.0038 19.2 0.7 8 141-148 52-59 (77)
10 1k1z_A VAV; SH3, proto-oncogen 7.8 77 0.0026 20.0 -0.2 8 141-148 51-58 (78)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.36 E-value=34 Score=19.61 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=8.6
Q ss_pred CCCcccccCCC
Q 031892 33 TGGFGSIFSPP 43 (151)
Q Consensus 33 sgiF~SIFppP 43 (151)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 45889999875
No 2
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=16.26 E-value=44 Score=23.29 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=6.4
Q ss_pred CCcccccCCCC
Q 031892 34 GGFGSIFSPPT 44 (151)
Q Consensus 34 giF~SIFppPs 44 (151)
-.++|+||||+
T Consensus 8 n~isSlfPpPP 18 (84)
T 3fbi_A 8 NEVSSLYPPPP 18 (84)
T ss_dssp ----CCSCCCC
T ss_pred cccccCCCCCC
Confidence 46779999887
No 3
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=15.15 E-value=26 Score=21.43 Aligned_cols=9 Identities=22% Similarity=1.110 Sum_probs=6.8
Q ss_pred CcccCCCcc
Q 031892 141 RGNWWQGSL 149 (151)
Q Consensus 141 RGnWWqGSl 149 (151)
.++||+|-|
T Consensus 53 ~~~Ww~g~~ 61 (62)
T 1g2b_A 53 NKDWWKVEV 61 (62)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 378999864
No 4
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=13.92 E-value=83 Score=17.39 Aligned_cols=13 Identities=54% Similarity=1.211 Sum_probs=7.2
Q ss_pred ccC-CCCccCCCCc
Q 031892 39 IFS-PPTAVQGRGS 51 (151)
Q Consensus 39 IFp-pPs~v~gr~s 51 (151)
||. ||+...||+-
T Consensus 9 mfsvppppi~gr~n 22 (26)
T 2bn5_B 9 MFSVPPPPILGRGX 22 (26)
T ss_dssp CCSCCCCSCCCCC-
T ss_pred eecCCCCCcccCCc
Confidence 555 3446777763
No 5
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=8.95 E-value=70 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=8.1
Q ss_pred ccccccCCCC
Q 031892 17 NFDHLFGPKD 26 (151)
Q Consensus 17 ~~~~lFGpk~ 26 (151)
-++++|||=.
T Consensus 67 KVdEIFGPin 76 (114)
T 3u28_C 67 KVDEILGPLN 76 (114)
T ss_dssp EEEEEESBTT
T ss_pred eEeEEeCCCC
Confidence 4799999975
No 6
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=8.84 E-value=82 Score=22.82 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.1
Q ss_pred eeeccccccCCCCC
Q 031892 99 IYYGGQENYSPRTK 112 (151)
Q Consensus 99 IyYGGqd~Ys~~~~ 112 (151)
-||||+.+|-|...
T Consensus 62 ~~~gG~~iYIPk~~ 75 (129)
T 1rr7_A 62 KHLGGGQVYIPRGQ 75 (129)
T ss_dssp HHHCSSCCCCCCSH
T ss_pred HHHCCeeEEeeCCc
Confidence 37899999988653
No 7
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=8.80 E-value=53 Score=22.98 Aligned_cols=7 Identities=43% Similarity=1.161 Sum_probs=5.6
Q ss_pred ccCCCcc
Q 031892 143 NWWQGSL 149 (151)
Q Consensus 143 nWWqGSl 149 (151)
+||+|.+
T Consensus 59 dWW~G~~ 65 (108)
T 1i1j_A 59 LFWGGSV 65 (108)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 6999864
No 8
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=8.16 E-value=94 Score=19.70 Aligned_cols=7 Identities=29% Similarity=1.327 Sum_probs=5.6
Q ss_pred cccCCCc
Q 031892 142 GNWWQGS 148 (151)
Q Consensus 142 GnWWqGS 148 (151)
++||+|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 6799984
No 9
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=8.03 E-value=1.1e+02 Score=19.24 Aligned_cols=8 Identities=25% Similarity=0.995 Sum_probs=6.2
Q ss_pred CcccCCCc
Q 031892 141 RGNWWQGS 148 (151)
Q Consensus 141 RGnWWqGS 148 (151)
.++||+|-
T Consensus 52 ~~~Ww~~~ 59 (77)
T 1awj_A 52 EIHWWRVQ 59 (77)
T ss_dssp SSSBCCCC
T ss_pred CCCCEEEE
Confidence 36899985
No 10
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=7.78 E-value=77 Score=20.02 Aligned_cols=8 Identities=50% Similarity=1.635 Sum_probs=6.2
Q ss_pred CcccCCCc
Q 031892 141 RGNWWQGS 148 (151)
Q Consensus 141 RGnWWqGS 148 (151)
..+||+|-
T Consensus 51 ~~gWw~g~ 58 (78)
T 1k1z_A 51 EHNWWEGR 58 (78)
T ss_dssp SCSCEEEE
T ss_pred CCCeEEEE
Confidence 36799986
Done!