BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031894
MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA
ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD
DDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS

High Scoring Gene Products

Symbol, full name Information P value
AT1G51730 protein from Arabidopsis thaliana 1.6e-29
Rwdd1
RWD domain containing 1 		protein from Mus musculus 0.00078

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031894
        (151 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2017532 - symbol:AT1G51730 species:3702 "Arabi...   327  1.6e-29   1
MGI|MGI:1913771 - symbol:Rwdd1 "RWD domain containing 1" ...    90  0.00078   1


>TAIR|locus:2017532 [details] [associations]
            symbol:AT1G51730 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR006575 Pfam:PF05773
            PROSITE:PS50908 SMART:SM00591 EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC025294 Gene3D:3.10.110.10
            InterPro:IPR016135 SUPFAM:SSF54495 eggNOG:NOG301416
            HOGENOM:HOG000237961 OMA:LDSIYCG UniGene:At.19414 UniGene:At.21082
            EMBL:AY081291 EMBL:BT000383 IPI:IPI00533675 PIR:C96556
            RefSeq:NP_175584.1 ProteinModelPortal:Q9C8I1 SMR:Q9C8I1
            STRING:Q9C8I1 PaxDb:Q9C8I1 PRIDE:Q9C8I1 EnsemblPlants:AT1G51730.1
            GeneID:841598 KEGG:ath:AT1G51730 TAIR:At1g51730 InParanoid:Q9C8I1
            PhylomeDB:Q9C8I1 ProtClustDB:CLSN2679429 ArrayExpress:Q9C8I1
            Genevestigator:Q9C8I1 Uniprot:Q9C8I1
        Length = 252

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 75/149 (50%), Positives = 85/149 (57%)

Query:     1 MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXX 60
             MAMIYTLV+SAK+WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETF         
Sbjct:   108 MAMIYTLVSSAKDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEA 167

Query:    61 XXXXXXXXXMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSXXXXXXXXXX 119
                      MPESALTAPKEKKLTGRQWFESGR      +G V + +E            
Sbjct:   168 ELALERAKLMPESALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDF 222

Query:   120 XXXXXXXXXXXMLEHYLAEKSDSSTHSSR 148
                        MLEHYLAEKSDSS   +R
Sbjct:   223 EDEDFEDDEEDMLEHYLAEKSDSSAPPTR 251


>MGI|MGI:1913771 [details] [associations]
            symbol:Rwdd1 "RWD domain containing 1" species:10090 "Mus
            musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR006575 Pfam:PF05773 PROSITE:PS50908
            SMART:SM00591 MGI:MGI:1913771 Gene3D:3.10.110.10 InterPro:IPR016135
            SUPFAM:SSF54495 eggNOG:NOG301416 GeneTree:ENSGT00390000009168
            CTD:51389 HOGENOM:HOG000237961 HOVERGEN:HBG060864 OMA:LDSIYCG
            OrthoDB:EOG46T32H EMBL:AF503942 EMBL:AK003262 EMBL:AK005278
            EMBL:AK011277 EMBL:BC062136 IPI:IPI00132659 RefSeq:NP_079890.1
            UniGene:Mm.28528 ProteinModelPortal:Q9CQK7 SMR:Q9CQK7 STRING:Q9CQK7
            PhosphoSite:Q9CQK7 PaxDb:Q9CQK7 PRIDE:Q9CQK7 DNASU:66521
            Ensembl:ENSMUST00000019917 GeneID:66521 KEGG:mmu:66521
            UCSC:uc007eun.1 InParanoid:Q9CQK7 ChiTaRS:RWDD1 NextBio:321924
            Bgee:Q9CQK7 CleanEx:MM_RWDD1 Genevestigator:Q9CQK7
            GermOnline:ENSMUSG00000019782 Uniprot:Q9CQK7
        Length = 243

 Score = 90 (36.7 bits), Expect = 0.00078, P = 0.00078
 Identities = 30/95 (31%), Positives = 42/95 (44%)

Query:     1 MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXX 56
             M MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E F     
Sbjct:    97 MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156

Query:    57 XXXXXXXXXXXXXMPESALTAPKEKKLTGRQWFES 91
                          M E       + KL+G+Q FE+
Sbjct:   157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.121   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       112   0.00091  102 3  11 23  0.42    31
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.41u 0.24s 9.65t   Elapsed:  00:00:00
  Total cpu time:  9.41u 0.24s 9.65t   Elapsed:  00:00:00
  Start:  Fri May 10 06:02:12 2013   End:  Fri May 10 06:02:12 2013

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