BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031894
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2
SV=1
Length = 243
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 1 MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
M MI+TLVT+ +E L+E Q E+E E+ E + HG PVT+E FL+W+
Sbjct: 97 MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156
Query: 57 RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
+F+AEL + K M E + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189
>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1
Length = 243
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 1 MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
M MI+TLVT+ +E L+E Q E+E E+ E + HG PVT+E FL+W+
Sbjct: 97 MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156
Query: 57 RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
+F+AEL + K M E + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189
>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1
Length = 243
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 1 MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
M MI+TLVT+ +E L+E Q E+E E+ E + HG PVT+E FL W+
Sbjct: 97 MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKA 156
Query: 57 RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
+F+AEL + K M E + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189
>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GIR2 PE=1 SV=1
Length = 265
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 1 MAMIYTLVTSAKE----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
M M + L++S KE W SE+ ++ +E EK E HG VT E++L WR
Sbjct: 142 MQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEWRS 201
Query: 57 RFEAELAL-ERAKLMPESALTAPKEKKLTGRQWFESG 92
+F EL L ER ++ A KLTG+Q FE G
Sbjct: 202 KFRQELKLDERDQVRRMKAHHG----KLTGKQMFEQG 234
>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4
SV=1
Length = 215
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 1 MAMIYTLVTSAKE-----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWR 55
MAMI++L + AKE + + + I+ +E E++ HG PVTVE+F W+
Sbjct: 97 MAMIFSLCSVAKEETNAILIEQSQRETQAIEERHRKEAEQENKKF-HGTPVTVESFTEWK 155
Query: 56 ERFEA----ELALERAKLMPESALT--------APKEKKLTGRQWFESG 92
+ F+A +L LE+ + E+ A EK++TGR+ FE+
Sbjct: 156 KGFDAWRNEQLKLEQESKLKEALSAASSSNARKAILEKRMTGRELFENN 204
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 109 SDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQP 150
SD +D EDID DD ++ V L YL HSS P
Sbjct: 177 SDSKDGEDIDKDDSILDNSYVKNLRKYLKSNKSDELHSSDIP 218
>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
melanogaster GN=CG8635 PE=1 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 38 VIVPHGEPVTVETFLAWRERFEAELALERAKLMPE-----SALTAPKEKKLTGRQWF 89
+ P+ VT+E+FLAW++R ++A ++AKL E S + K+ ++GR+ F
Sbjct: 232 ALGPNQTRVTLESFLAWKKR---KIAEKKAKLAAEEERKKSDFSKGKQFGISGREMF 285
>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1
Length = 406
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 46 VTVETFLAWRERFEAELALERAKLMPE-----SALTAPKEKKLTGRQWF 89
VT+ETFLAW++R +L ++AK++ E S + K+ ++GR+ F
Sbjct: 241 VTLETFLAWKKR---KLQEKKAKMVAEEERKKSDFSKGKQFGISGREMF 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,572,167
Number of Sequences: 539616
Number of extensions: 2528328
Number of successful extensions: 30309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 360
Number of HSP's that attempted gapping in prelim test: 22403
Number of HSP's gapped (non-prelim): 5077
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)