Query 031894
Match_columns 151
No_of_seqs 129 out of 355
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4018 Uncharacterized conser 100.0 2.9E-29 6.3E-34 205.4 3.5 109 1-112 98-214 (215)
2 KOG1763 Uncharacterized conser 99.0 2.4E-10 5.2E-15 98.5 4.1 64 42-107 225-288 (343)
3 COG5252 Uncharacterized conser 97.3 0.00012 2.5E-09 62.4 1.9 66 35-102 201-269 (299)
4 PF12253 CAF1A: Chromatin asse 68.8 4.5 9.7E-05 28.7 2.3 36 80-115 23-59 (77)
5 PF14812 PBP1_TM: Transmembran 58.6 3.2 7E-05 29.9 0.0 14 115-128 35-48 (81)
6 PF04036 DUF372: Domain of unk 47.4 5.3 0.00011 25.0 -0.3 15 39-53 16-30 (38)
7 KOG0943 Predicted ubiquitin-pr 43.3 13 0.00028 39.3 1.4 22 84-105 1703-1724(3015)
8 PF05764 YL1: YL1 nuclear prot 41.4 22 0.00048 29.6 2.4 8 116-123 57-64 (240)
9 KOG1832 HIV-1 Vpr-binding prot 41.2 13 0.00028 37.8 1.1 7 88-94 1394-1400(1516)
10 PF10446 DUF2457: Protein of u 38.0 17 0.00036 33.7 1.2 14 40-53 20-33 (458)
11 PF04871 Uso1_p115_C: Uso1 / p 37.4 18 0.0004 27.8 1.2 10 101-110 111-120 (136)
12 COG3657 Uncharacterized protei 31.6 54 0.0012 24.5 2.8 23 44-66 5-27 (100)
13 PF04889 Cwf_Cwc_15: Cwf15/Cwc 28.9 47 0.001 28.0 2.4 12 55-66 56-67 (244)
14 KOG4445 Uncharacterized conser 26.0 29 0.00063 31.0 0.7 18 1-18 94-111 (368)
15 KOG0898 40S ribosomal protein 23.8 57 0.0012 26.0 1.9 21 129-149 116-148 (152)
16 KOG2023 Nuclear transport rece 22.6 38 0.00083 33.4 0.8 9 46-54 272-280 (885)
17 PF04931 DNA_pol_phi: DNA poly 21.7 51 0.0011 31.8 1.5 12 4-15 476-487 (784)
18 PF02380 Papo_T_antigen: T-ant 21.7 65 0.0014 23.6 1.7 14 43-56 67-80 (92)
19 KOG2662 Magnesium transporters 21.6 58 0.0013 29.9 1.7 14 126-139 248-261 (414)
20 PF12715 Abhydrolase_7: Abhydr 21.1 96 0.0021 28.2 3.0 22 45-66 43-64 (390)
No 1
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=99.95 E-value=2.9e-29 Score=205.45 Aligned_cols=109 Identities=39% Similarity=0.466 Sum_probs=90.7
Q ss_pred CceehhhHHHHHHHHHHHhhhhhcc--cccchhhhhhhhhcCCCCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCC
Q 031894 1 MAMIYTLVTSAKEWLSERYSQDAGI--DNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAP 78 (151)
Q Consensus 1 M~MIFTLvsa~KE~L~e~~~q~~~~--~e~e~~e~eeeE~~~~~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~ 78 (151)
|+|||||||++|+||+++++|...+ .+.+.++++++++++|||||||++||++||.+|++++...+++.++. .+.
T Consensus 98 maMiftLvss~ke~l~e~~~q~~~~e~~e~~~~~~ee~e~~kfhgt~VT~esfl~Wk~~fe~el~~~~~k~~~~---~~~ 174 (215)
T KOG4018|consen 98 MAMIFTLVSSAKEELNEIVEQQKAAEQREQEAREAEEEERKKFHGTPVTLESFLEWKLKFEEELLQIKAKVKKR---LQA 174 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceehhhhHHHHHhhhhhhhhhhhhhhhH---HHH
Confidence 9999999999999999999998776 44567788999999999999999999999999999997776666542 456
Q ss_pred CCCCcchhHHHhcCCccccc------cCCCcccccCCCCc
Q 031894 79 KEKKLTGRQWFESGRATAVS------QKGAVTVNEVSDDE 112 (151)
Q Consensus 79 ~~~kLTGRqLFe~d~~L~~s------d~g~~~~~~es~~~ 112 (151)
..+++||||+|++|+.+..+ |++..++.++++|+
T Consensus 175 ~~~k~tgRQ~f~~d~~~~~~~~~~~~da~~~~e~~e~~f~ 214 (215)
T KOG4018|consen 175 LAKKLTGRQLFETDHKGDRSDIWNLVDAVKDVEIDESLFQ 214 (215)
T ss_pred HhhhHHHHHHHHhcccCChhhhHHhhhhhhhhhcchhhcc
Confidence 77999999999999999777 44555555555544
No 2
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=99.01 E-value=2.4e-10 Score=98.55 Aligned_cols=64 Identities=28% Similarity=0.309 Sum_probs=46.7
Q ss_pred CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHHhcCCccccccCCCccccc
Q 031894 42 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNE 107 (151)
Q Consensus 42 ~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqLFe~d~~L~~sd~g~~~~~~ 107 (151)
+.||||+++|++||.+..+++.+..++..... +..++.+ ||||+||++++.|+.+|++++.+.+
T Consensus 225 nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~-k~~gk~~-~sGRElF~~~~dl~~dd~~e~~d~e 288 (343)
T KOG1763|consen 225 NLTPLTEETFKAWKKRKIRERKEKLAAEKAER-KKVGKSN-MSGRELFESNADLVNDDDEEAGDLE 288 (343)
T ss_pred CCccccHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhccCC-CchHHHHhhchhhccCchhhccchh
Confidence 58999999999999998777766554433221 1223334 9999999999999988866555444
No 3
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.29 E-value=0.00012 Score=62.40 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=41.7
Q ss_pred hhhhcCC--CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchh-HHHhcCCccccccCCC
Q 031894 35 KDEVIVP--HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGR-QWFESGRATAVSQKGA 102 (151)
Q Consensus 35 eeE~~~~--~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGR-qLFe~d~~L~~sd~g~ 102 (151)
+-++.+. ..||||.|+|..|+.-.+-....++.++ .+.+...+...+||+ ++|+++..++-+|-++
T Consensus 201 E~eR~~L~~~LTP~TeenFk~Wkd~~~~r~lkq~ee~--~s~Rk~~gr~~~~k~~e~FEt~~d~~~ddv~~ 269 (299)
T COG5252 201 ELERQSLPEKLTPLTEENFKEWKDGRRLRILKQKEEK--ESARKVKGRATGTKGVELFETRRDLFKDDVEA 269 (299)
T ss_pred HHHhccCCCcCCcccHHHHHHhccchHHHHHHHHHHH--Hhcccchhhhhhccchhhhhcccccccccccc
Confidence 4444443 5899999999999976554443333222 122223344556666 9999999987776443
No 4
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=68.78 E-value=4.5 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=23.9
Q ss_pred CCCcchhHHHhcC-CccccccCCCcccccCCCCcCCC
Q 031894 80 EKKLTGRQWFESG-RATAVSQKGAVTVNEVSDDEDDE 115 (151)
Q Consensus 80 ~~kLTGRqLFe~d-~~L~~sd~g~~~~~~es~~~~~~ 115 (151)
...++||.-|-++ +.|.-+=+....+.++..+++++
T Consensus 23 s~~v~~r~P~~~d~~~lDYdyDSd~EWeE~e~GEdl~ 59 (77)
T PF12253_consen 23 SKIVTPRNPFAKDLPNLDYDYDSDDEWEEEEEGEDLD 59 (77)
T ss_pred ccccccCCcccccccccceecCCccccccCCCCcccc
Confidence 4678899999998 77766655666665544444443
No 5
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=58.57 E-value=3.2 Score=29.87 Aligned_cols=14 Identities=57% Similarity=0.857 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCH
Q 031894 115 EDIDFDDDDFEDDE 128 (151)
Q Consensus 115 ~d~~~~d~d~~~~~ 128 (151)
+|.++.|||++||+
T Consensus 35 ~ddd~~DDD~dDde 48 (81)
T PF14812_consen 35 YDDDYEDDDDDDDE 48 (81)
T ss_dssp --------------
T ss_pred cccccccccccchh
Confidence 33444444444433
No 6
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=47.38 E-value=5.3 Score=25.04 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=10.4
Q ss_pred cCCCCcccChhHHHH
Q 031894 39 IVPHGEPVTVETFLA 53 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~ 53 (151)
..|.||||+++|-..
T Consensus 16 HQF~GtPvs~~~~~~ 30 (38)
T PF04036_consen 16 HQFVGTPVSPETAES 30 (38)
T ss_dssp HHHTT-EESTTTHHH
T ss_pred HHhcCCcCCcchHHH
Confidence 347799999988643
No 7
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=13 Score=39.27 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=13.1
Q ss_pred chhHHHhcCCccccccCCCccc
Q 031894 84 TGRQWFESGRATAVSQKGAVTV 105 (151)
Q Consensus 84 TGRqLFe~d~~L~~sd~g~~~~ 105 (151)
..|.|..-+..-+|+.++..++
T Consensus 1703 rrrrllsgnttndtnaDnEEre 1724 (3015)
T KOG0943|consen 1703 RRRRLLSGNTTNDTNADNEERE 1724 (3015)
T ss_pred hhhhhccCCccCccccchhhhc
Confidence 3456666666667775554443
No 8
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.43 E-value=22 Score=29.57 Aligned_cols=8 Identities=63% Similarity=1.132 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 031894 116 DIDFDDDD 123 (151)
Q Consensus 116 d~~~~d~d 123 (151)
|.||++++
T Consensus 57 Dsdf~~se 64 (240)
T PF05764_consen 57 DSDFDDSE 64 (240)
T ss_pred ccccCccc
Confidence 55555543
No 9
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.22 E-value=13 Score=37.81 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.9
Q ss_pred HHhcCCc
Q 031894 88 WFESGRA 94 (151)
Q Consensus 88 LFe~d~~ 94 (151)
|+|-++-
T Consensus 1394 ~yEIGR~ 1400 (1516)
T KOG1832|consen 1394 MYEIGRR 1400 (1516)
T ss_pred hhhhccc
Confidence 3444443
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=38.04 E-value=17 Score=33.69 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=9.2
Q ss_pred CCCCcccChhHHHH
Q 031894 40 VPHGEPVTVETFLA 53 (151)
Q Consensus 40 ~~~GTPVT~EsF~~ 53 (151)
-.+++.+|+.--++
T Consensus 20 ~~~~~KlTi~Dtlk 33 (458)
T PF10446_consen 20 TDYKRKLTINDTLK 33 (458)
T ss_pred ccccccccHHHHHH
Confidence 35677788776654
No 11
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.39 E-value=18 Score=27.76 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.0
Q ss_pred CCcccccCCC
Q 031894 101 GAVTVNEVSD 110 (151)
Q Consensus 101 g~~~~~~es~ 110 (151)
|..|..++.+
T Consensus 111 G~eVSddE~~ 120 (136)
T PF04871_consen 111 GEEVSDDEDS 120 (136)
T ss_pred CCCccCCccc
Confidence 5555445433
No 12
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.65 E-value=54 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.4
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q 031894 44 EPVTVETFLAWRERFEAELALER 66 (151)
Q Consensus 44 TPVT~EsF~~WK~kf~~E~~~~k 66 (151)
|+-+.++|.+|..+..-.++.++
T Consensus 5 ~~~~~d~F~~W~~kLkD~~Aka~ 27 (100)
T COG3657 5 TLKGTDTFSEWLKKLKDRRAKAK 27 (100)
T ss_pred eecchHHHHHHHHHHHhHHHHHH
Confidence 67788999999999876666554
No 13
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=28.92 E-value=47 Score=28.03 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 031894 55 RERFEAELALER 66 (151)
Q Consensus 55 K~kf~~E~~~~k 66 (151)
+..|.+++....
T Consensus 56 ~rdlr~eLe~~E 67 (244)
T PF04889_consen 56 KRDLRAELEEAE 67 (244)
T ss_pred HHHHHHHHHHHH
Confidence 334666665544
No 14
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=26.00 E-value=29 Score=31.04 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=16.7
Q ss_pred CceehhhHHHHHHHHHHH
Q 031894 1 MAMIYTLVTSAKEWLSER 18 (151)
Q Consensus 1 M~MIFTLvsa~KE~L~e~ 18 (151)
|||||-|+..++|+|.++
T Consensus 94 ~pii~~lie~~~e~LT~n 111 (368)
T KOG4445|consen 94 MPIICQLIEHCSEFLTEN 111 (368)
T ss_pred CchhHHHHHHHHHHcccC
Confidence 899999999999999775
No 15
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=57 Score=25.99 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=14.8
Q ss_pred HHHHHHHHhcc------------CCCCCcCCCC
Q 031894 129 VDMLEHYLAEK------------SDSSTHSSRQ 149 (151)
Q Consensus 129 ~~~~~~~~~~~------------~~~~~~~~~~ 149 (151)
..|+-|||++= .-.++||||-
T Consensus 116 PEMIGhYL~eFsiTykpvkHgrpgigat~Ssrf 148 (152)
T KOG0898|consen 116 PEMIGHYLGEFSITYKPVKHGRPGIGATHSSRF 148 (152)
T ss_pred HHHHhhhhhhccccccccccCCCCCCccccccc
Confidence 58999999953 2335788764
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=38 Score=33.40 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=3.7
Q ss_pred cChhHHHHH
Q 031894 46 VTVETFLAW 54 (151)
Q Consensus 46 VT~EsF~~W 54 (151)
|.+|---=|
T Consensus 272 VALEACEFw 280 (885)
T KOG2023|consen 272 VALEACEFW 280 (885)
T ss_pred HHHHHHHHH
Confidence 444443334
No 17
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.74 E-value=51 Score=31.81 Aligned_cols=12 Identities=58% Similarity=0.780 Sum_probs=5.2
Q ss_pred ehhhHHHHHHHH
Q 031894 4 IYTLVTSAKEWL 15 (151)
Q Consensus 4 IFTLvsa~KE~L 15 (151)
+++|+..++..|
T Consensus 476 ~~~l~~~~~~~l 487 (784)
T PF04931_consen 476 LYTLVQIASELL 487 (784)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 18
>PF02380 Papo_T_antigen: T-antigen specific domain; InterPro: IPR003354 This domain represents a conserved region in papovavirus small and middle T-antigens. It is found as the N-terminal domain in the small T-antigen, and is centrally located in the middle T-antigen.; PDB: 2PF4_G 2PKG_D.
Probab=21.71 E-value=65 Score=23.64 Aligned_cols=14 Identities=43% Similarity=0.907 Sum_probs=11.0
Q ss_pred CcccChhHHHHHHH
Q 031894 43 GEPVTVETFLAWRE 56 (151)
Q Consensus 43 GTPVT~EsF~~WK~ 56 (151)
|.|+|.++|.-|+.
T Consensus 67 G~~~~~esf~~W~~ 80 (92)
T PF02380_consen 67 GLPLTWESFQWWKK 80 (92)
T ss_dssp T--SSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 89999999999974
No 19
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=21.56 E-value=58 Score=29.88 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHhcc
Q 031894 126 DDEVDMLEHYLAEK 139 (151)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (151)
||++||.+-||.+|
T Consensus 248 ddd~Dma~mYLT~K 261 (414)
T KOG2662|consen 248 DDDDDMAEMYLTRK 261 (414)
T ss_pred cChHHHHHHHHhHH
Confidence 45678999999999
No 20
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=21.07 E-value=96 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHH
Q 031894 45 PVTVETFLAWRERFEAELALER 66 (151)
Q Consensus 45 PVT~EsF~~WK~kf~~E~~~~k 66 (151)
+.|...|.+||+++++.+.+.-
T Consensus 43 ~~s~~~f~~Wr~~~R~~L~ell 64 (390)
T PF12715_consen 43 DMSPKDFEAWRKQARKTLRELL 64 (390)
T ss_dssp T--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999887654
Done!