Query 031894
Match_columns 151
No_of_seqs 129 out of 355
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_C Translation machinery-a 99.0 4.2E-10 1.4E-14 86.8 4.4 44 42-93 34-77 (142)
2 4fp9_B Mterf domain-containing 69.3 1.8 6E-05 36.6 1.6 19 45-63 261-279 (335)
3 2i52_A Hypothetical protein; s 22.6 13 0.00046 27.5 -0.7 16 39-54 31-46 (121)
4 2iec_A Uncharacterized protein 22.1 20 0.00069 26.9 0.2 16 39-54 28-43 (131)
5 2ogf_A Hypothetical protein MJ 21.4 15 0.0005 27.4 -0.7 16 39-54 36-51 (122)
6 2zvk_U DNA polymerase ETA, pro 20.5 37 0.0013 18.7 1.0 14 39-53 4-17 (26)
7 1xrs_A D-lysine 5,6-aminomutas 15.0 96 0.0033 27.9 2.8 20 41-60 203-222 (516)
8 3o3m_A Alpha subunit 2-hydroxy 14.9 2.8E+02 0.0095 23.2 5.7 47 39-89 168-215 (408)
9 3fze_A Protein STE5; alpha/bet 14.0 59 0.002 25.9 1.1 15 116-130 182-196 (196)
10 2w6a_A ARF GTPase-activating p 13.9 1.9E+02 0.0066 18.9 3.4 22 45-66 9-30 (63)
No 1
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.2e-10 Score=86.80 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=33.9
Q ss_pred CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHHhcCC
Q 031894 42 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGR 93 (151)
Q Consensus 42 ~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqLFe~d~ 93 (151)
+.||||+|+|++||+++..++.....+. .+++++|||+||..+.
T Consensus 34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~ 77 (142)
T 4a9a_C 34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMS 77 (142)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhcc
Confidence 4699999999999999888875543322 2245789999999864
No 2
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=69.30 E-value=1.8 Score=36.61 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=15.6
Q ss_pred ccChhHHHHHHHHHHHHHH
Q 031894 45 PVTVETFLAWRERFEAELA 63 (151)
Q Consensus 45 PVT~EsF~~WK~kf~~E~~ 63 (151)
.+|++.|..|++-+..|..
T Consensus 261 ~~s~eey~~F~k~~~~e~~ 279 (335)
T 4fp9_B 261 CTSVEEFQVFKKLLAREEE 279 (335)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhhh
Confidence 4899999999888877764
No 3
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=22.64 E-value=13 Score=27.54 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=11.9
Q ss_pred cCCCCcccChhHHHHH
Q 031894 39 IVPHGEPVTVETFLAW 54 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~W 54 (151)
..|.||||+++|=..-
T Consensus 31 HQFvGtPV~~eta~sL 46 (121)
T 2i52_A 31 HQYTGIPVNSENASMA 46 (121)
T ss_dssp HHHTTCEECTTTHHHH
T ss_pred hhccCCccCcccHHHH
Confidence 3477999998886444
No 4
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=22.12 E-value=20 Score=26.92 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=12.1
Q ss_pred cCCCCcccChhHHHHH
Q 031894 39 IVPHGEPVTVETFLAW 54 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~W 54 (151)
..|.||||+++|=..-
T Consensus 28 HQFvGtPV~~eta~sL 43 (131)
T 2iec_A 28 HQFCGTPVSPGTAEEV 43 (131)
T ss_dssp HHHTTCEECGGGHHHH
T ss_pred hhhcCCccCcccHHHH
Confidence 3477999999986544
No 5
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=21.38 E-value=15 Score=27.36 Aligned_cols=16 Identities=19% Similarity=0.001 Sum_probs=11.9
Q ss_pred cCCCCcccChhHHHHH
Q 031894 39 IVPHGEPVTVETFLAW 54 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~W 54 (151)
..|.||||+++|=..-
T Consensus 36 HQFvGtPV~~eta~sL 51 (122)
T 2ogf_A 36 HQFVGTPVSKYNKESL 51 (122)
T ss_dssp HHHTTCEECTTTHHHH
T ss_pred hhhcCCccCcccHHHH
Confidence 3467999998886544
No 6
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=20.47 E-value=37 Score=18.70 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=10.3
Q ss_pred cCCCCcccChhHHHH
Q 031894 39 IVPHGEPVTVETFLA 53 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~ 53 (151)
.++.|+. |+++|-+
T Consensus 4 ~R~~g~~-TLesFFK 17 (26)
T 2zvk_U 4 PRPEGMQ-TLESFFK 17 (26)
T ss_pred CCccccc-cHHHHhc
Confidence 4567777 9999953
No 7
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=15.00 E-value=96 Score=27.93 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCCcccChhHHHHHHHHHHH
Q 031894 41 PHGEPVTVETFLAWRERFEA 60 (151)
Q Consensus 41 ~~GTPVT~EsF~~WK~kf~~ 60 (151)
|.|||+|.|+|..-|+..+.
T Consensus 203 ~GGt~aTqenfR~mRkALD~ 222 (516)
T 1xrs_A 203 FGGTYATQENFRLMREALDK 222 (516)
T ss_dssp TTSCCCCHHHHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHH
Confidence 56899999999888876654
No 8
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=14.90 E-value=2.8e+02 Score=23.19 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred cCCCCcccChhHHHHHHHHHHHHHHHHHHhcCccccccC-CCCCCcchhHHH
Q 031894 39 IVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTA-PKEKKLTGRQWF 89 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~-~~~~kLTGRqLF 89 (151)
....|.++|.+.|.+--+..++.+...+.-.. ..+ ....++||.++|
T Consensus 168 E~~tG~ki~~e~L~eai~~~N~~r~~~~~~~~----l~~~~~p~pisg~d~~ 215 (408)
T 3o3m_A 168 EIISGKKFDPKKFEEVMKISAENGRLWKYSMS----LPADSSPSPMNGFDLF 215 (408)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHTT----TTTTCSSCSSCGGGHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCccHHHHH
Confidence 34679999999998888887777665543211 223 456789999988
No 9
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=13.96 E-value=59 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHH
Q 031894 116 DIDFDDDDFEDDEVD 130 (151)
Q Consensus 116 d~~~~d~d~~~~~~~ 130 (151)
.+.|+|||++.||++
T Consensus 182 ~L~F~dDdd~~d~d~ 196 (196)
T 3fze_A 182 GLSFDEHDDDDEEDN 196 (196)
T ss_dssp TCCSSCCCC------
T ss_pred cccccCCCcccccCC
No 10
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=13.89 E-value=1.9e+02 Score=18.92 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHH
Q 031894 45 PVTVETFLAWRERFEAELALER 66 (151)
Q Consensus 45 PVT~EsF~~WK~kf~~E~~~~k 66 (151)
|||++.|+.-|....+--+...
T Consensus 9 pit~qeylevK~ALaaSeAkiQ 30 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQ 30 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHH
Done!