Query 031894
Match_columns 151
No_of_seqs 129 out of 355
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 10:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qcrd2 a.3.1.3 (D:167-195) Cy 34.0 8.6 0.00063 20.5 1.4 14 42-55 7-27 (29)
2 d2pkgc1 g.92.1.1 (C:91-170) Sm 30.9 12 0.00084 24.4 1.9 15 43-57 59-73 (80)
3 d2ieca1 d.316.1.1 (A:11-123) H 26.4 5.7 0.00041 27.5 -0.3 16 39-54 20-35 (113)
4 d2i52a1 d.316.1.1 (A:1-120) Hy 19.8 7.8 0.00057 27.0 -0.7 16 39-54 30-45 (120)
5 d1s6la1 a.4.5.79 (A:21-80) Alk 15.3 21 0.0015 21.9 0.6 15 39-53 10-24 (60)
6 d2ga1a1 a.4.1.16 (A:1-102) Hyp 15.2 31 0.0022 22.9 1.5 20 38-57 43-62 (102)
7 d1xrsa_ c.1.19.4 (A:) D-lysine 14.2 49 0.0036 27.6 2.8 21 41-61 203-223 (516)
8 d1b0xa_ a.60.1.2 (A:) EphA4 re 12.1 15 0.0011 22.0 -0.8 14 5-18 1-14 (72)
9 d2oa4a1 a.4.12.3 (A:1-93) Unch 10.1 72 0.0052 20.8 2.1 15 45-59 61-75 (93)
10 d1pbya1 a.3.1.7 (A:1-85) Quino 7.4 64 0.0046 20.2 0.9 10 83-92 1-10 (85)
No 1
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.01 E-value=8.6 Score=20.52 Aligned_cols=14 Identities=50% Similarity=1.080 Sum_probs=10.9
Q ss_pred CCcccChh-------HHHHHH
Q 031894 42 HGEPVTVE-------TFLAWR 55 (151)
Q Consensus 42 ~GTPVT~E-------sF~~WK 55 (151)
.|||-|++ +|+.|-
T Consensus 7 DGt~at~~q~a~DV~~FL~Wa 27 (29)
T d1qcrd2 7 DGTPATMSQVAKDVCTFLRWA 27 (29)
T ss_pred CCCcCcHHHHHHHHHHHHHHh
Confidence 58999987 577774
No 2
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=30.92 E-value=12 Score=24.36 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.6
Q ss_pred CcccChhHHHHHHHH
Q 031894 43 GEPVTVETFLAWRER 57 (151)
Q Consensus 43 GTPVT~EsF~~WK~k 57 (151)
|.|+|.++|.-|+.-
T Consensus 59 G~~~t~~~f~~W~~i 73 (80)
T d2pkgc1 59 GLDLCEGTLLLWCDI 73 (80)
T ss_dssp TCCSSHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 999999999999754
No 3
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=26.42 E-value=5.7 Score=27.45 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=12.2
Q ss_pred cCCCCcccChhHHHHH
Q 031894 39 IVPHGEPVTVETFLAW 54 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~W 54 (151)
..|.||||.++|=..-
T Consensus 20 HQF~GtPVs~~sa~sl 35 (113)
T d2ieca1 20 HQFCGTPVSPGTAEEV 35 (113)
T ss_dssp HHHTTCEECGGGHHHH
T ss_pred eeecCcccCcccHHHH
Confidence 3478999999986544
No 4
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=19.76 E-value=7.8 Score=26.99 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=12.1
Q ss_pred cCCCCcccChhHHHHH
Q 031894 39 IVPHGEPVTVETFLAW 54 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~W 54 (151)
..|.||||.++|=..-
T Consensus 30 HQFvGtPVs~~sa~sl 45 (120)
T d2i52a1 30 HQYTGIPVNSENASMA 45 (120)
T ss_dssp HHHTTCEECTTTHHHH
T ss_pred eeecccccChhhHHHH
Confidence 3478999999986443
No 5
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=15.34 E-value=21 Score=21.90 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.4
Q ss_pred cCCCCcccChhHHHH
Q 031894 39 IVPHGEPVTVETFLA 53 (151)
Q Consensus 39 ~~~~GTPVT~EsF~~ 53 (151)
...+|.|||++....
T Consensus 10 ~LA~G~PVs~~~LA~ 24 (60)
T d1s6la1 10 ELAKGRPVSRTTLAG 24 (60)
T ss_dssp HHHTTCCBCHHHHHH
T ss_pred HHhCCCCcCHHHHHH
Confidence 345899999998743
No 6
>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493 orthologue) {Anabaena variabilis [TaxId: 1172]}
Probab=15.25 E-value=31 Score=22.87 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.1
Q ss_pred hcCCCCcccChhHHHHHHHH
Q 031894 38 VIVPHGEPVTVETFLAWRER 57 (151)
Q Consensus 38 ~~~~~GTPVT~EsF~~WK~k 57 (151)
+-++.||.||+.+.+.|...
T Consensus 43 ~P~I~GTRI~V~~Il~~l~~ 62 (102)
T d2ga1a1 43 QARIRNTRIPVWTLVAYRQQ 62 (102)
T ss_dssp CCEETTSCCBHHHHHHHHHT
T ss_pred cceEecccccHHHHHHHHHc
Confidence 35678999999999998653
No 7
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]}
Probab=14.21 E-value=49 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=16.8
Q ss_pred CCCcccChhHHHHHHHHHHHH
Q 031894 41 PHGEPVTVETFLAWRERFEAE 61 (151)
Q Consensus 41 ~~GTPVT~EsF~~WK~kf~~E 61 (151)
+.|||+|.|+|..=|+..+.-
T Consensus 203 ~GGt~aTqenfR~mRkALD~v 223 (516)
T d1xrsa_ 203 FGGTYATQENFRLMREALDKV 223 (516)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHH
Confidence 568999999998888766543
No 8
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.11 E-value=15 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.684 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHH
Q 031894 5 YTLVTSAKEWLSER 18 (151)
Q Consensus 5 FTLvsa~KE~L~e~ 18 (151)
||-|++|.+||..+
T Consensus 1 ~s~v~sV~~WL~~l 14 (72)
T d1b0xa_ 1 FSAVVSVGDWLQAI 14 (72)
T ss_dssp CCSSCCHHHHHHHT
T ss_pred CCchhhHHHHHHHC
Confidence 67888999999875
No 9
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=10.09 E-value=72 Score=20.76 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.4
Q ss_pred ccChhHHHHHHHHHH
Q 031894 45 PVTVETFLAWRERFE 59 (151)
Q Consensus 45 PVT~EsF~~WK~kf~ 59 (151)
-++.+.|..|...|.
T Consensus 61 ~LS~eEf~~W~~a~~ 75 (93)
T d2oa4a1 61 GLSDEEFNSWVSALA 75 (93)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 478999999987664
No 10
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.36 E-value=64 Score=20.15 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=7.9
Q ss_pred cchhHHHhcC
Q 031894 83 LTGRQWFESG 92 (151)
Q Consensus 83 LTGRqLFe~d 92 (151)
|||++|+...
T Consensus 1 ~tG~~lv~~~ 10 (85)
T d1pbya1 1 VTGEEVLQNA 10 (85)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 6888888775
Done!