Your job contains 1 sequence.
>031896
MTLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS
KNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQ
NGHTSTGQSGGAIASPAKSMVSKIMDLMFGI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031896
(151 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094937 - symbol:AT3G16310 "AT3G16310" species... 528 8.3e-51 1
ZFIN|ZDB-GENE-030131-9407 - symbol:nup35 "nucleoporin 35"... 197 1.2e-15 1
UNIPROTKB|J9P1M8 - symbol:NUP35 "Uncharacterized protein"... 171 1.3e-12 1
UNIPROTKB|B4DYB4 - symbol:NUP35 "Nucleoporin NUP53" speci... 170 1.7e-12 1
UNIPROTKB|A6QPZ3 - symbol:NUP35 "NUP35 protein" species:9... 167 1.7e-12 1
UNIPROTKB|Q8NFH5 - symbol:NUP35 "Nucleoporin NUP53" speci... 170 2.0e-12 1
RGD|1303069 - symbol:Nup35 "nucleoporin 35" species:10116... 169 2.6e-12 1
UNIPROTKB|E1C8U1 - symbol:NUP35 "Uncharacterized protein"... 166 5.3e-12 1
FB|FBgn0030943 - symbol:CG6540 species:7227 "Drosophila m... 166 6.0e-12 1
POMBASE|SPAC19E9.01c - symbol:nup40 "nucleoporin Nup40" s... 114 4.0e-06 1
>TAIR|locus:2094937 [details] [associations]
symbol:AT3G16310 "AT3G16310" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017389
PIRSF:PIRSF038119 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0031965 GO:GO:0055085 EMBL:AB023046 EMBL:AC001645
InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472 eggNOG:NOG253574
KO:K14313 EMBL:AY086937 EMBL:BT002339 IPI:IPI00520235
RefSeq:NP_566542.1 UniGene:At.6084 ProteinModelPortal:O04326
SMR:O04326 IntAct:O04326 PaxDb:O04326 PRIDE:O04326
EnsemblPlants:AT3G16310.1 GeneID:820878 KEGG:ath:AT3G16310
TAIR:At3g16310 HOGENOM:HOG000005837 InParanoid:O04326 OMA:HILYQNR
PhylomeDB:O04326 ProtClustDB:CLSN2688444 Genevestigator:O04326
Uniprot:O04326
Length = 329
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 102/144 (70%), Positives = 119/144 (82%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ + F P DTNLVLREFEKCG++LKHVPGPR+ANWMHILYQNRSDA KAL+K GM ING
Sbjct: 189 VTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAGMMING 248
Query: 69 VLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ 128
V+IVGVKP+DP+Q+QALNER+N+QGFM LPPPSS N+ R SRP YLQNG + Q
Sbjct: 249 VVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQYLQNGSAFSPQ 305
Query: 129 -SGGAIASPAKSMVSKIMDLMFGI 151
SGGA+ASP+KSMVSK DLMFG+
Sbjct: 306 PSGGAMASPSKSMVSKFFDLMFGV 329
>ZFIN|ZDB-GENE-030131-9407 [details] [associations]
symbol:nup35 "nucleoporin 35" species:7955 "Danio
rerio" [GO:0055085 "transmembrane transport" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0005643 "nuclear
pore" evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017389 PIRSF:PIRSF038119 ZFIN:ZDB-GENE-030131-9407
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0055085
GO:GO:0051028 InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
eggNOG:NOG253574 GeneTree:ENSGT00390000005923 KO:K14313
EMBL:BC061958 IPI:IPI00498645 RefSeq:NP_956360.1 UniGene:Dr.5851
ProteinModelPortal:Q6P6X9 SMR:Q6P6X9 STRING:Q6P6X9 PRIDE:Q6P6X9
Ensembl:ENSDART00000032344 GeneID:337461 KEGG:dre:337461 CTD:129401
HOGENOM:HOG000231921 HOVERGEN:HBG060396 InParanoid:Q6P6X9
OMA:ANISVMQ NextBio:20812252 ArrayExpress:Q6P6X9 Bgee:Q6P6X9
Uniprot:Q6P6X9
Length = 308
Score = 197 (74.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 53/148 (35%), Positives = 78/148 (52%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
I F FPPA + +L +F + G ILKHV NWMH+ YQ++ A+KALSK+G
Sbjct: 161 ITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGE 219
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPYYLQ-NGHT 124
+++GVKP +D ++L++ S T P P + + L++ R+ RP +
Sbjct: 220 AIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASS 279
Query: 125 STGQSGGAIASPAK--SMVSKIMDLMFG 150
S Q +P K S VSK M+ MFG
Sbjct: 280 SDYQVVSDQQTPKKDESFVSKAMEYMFG 307
>UNIPROTKB|J9P1M8 [details] [associations]
symbol:NUP35 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055085 "transmembrane transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR017389 PIRSF:PIRSF038119 GO:GO:0031965 GO:GO:0055085
InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
GeneTree:ENSGT00390000005923 OMA:ANISVMQ EMBL:AAEX03017844
EMBL:AAEX03017845 Ensembl:ENSCAFT00000046623 Uniprot:J9P1M8
Length = 312
Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/155 (34%), Positives = 75/155 (48%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 162 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 220
Query: 69 VLIVGVKPLDPMQRQALNER--INSQGFMTLPP---------PSSRTSELNSFRASSRPY 117
+++GVKP N+R ++S PP P S T +++ R + Y
Sbjct: 221 SIMIGVKPCIDKSVMENNDRCALSSPSLAFTPPIKTLGTPTQPGS-TPRISTMRPLATAY 279
Query: 118 YLQNGHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VSK M+ MFG
Sbjct: 280 ---KASTSDYQVISDRQTPKKDESLVSKAMEYMFG 311
>UNIPROTKB|B4DYB4 [details] [associations]
symbol:NUP35 "Nucleoporin NUP53" species:9606 "Homo
sapiens" [GO:0055085 "transmembrane transport" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR017389 PIRSF:PIRSF038119 GO:GO:0031965 GO:GO:0055085
GO:GO:0045111 EMBL:AC064871 InterPro:IPR007846 Pfam:PF05172
PROSITE:PS51472 HOGENOM:HOG000231921 HOVERGEN:HBG060396
EMBL:AC079249 UniGene:Hs.180591 HGNC:HGNC:29797 EMBL:AK302350
IPI:IPI00916892 SMR:B4DYB4 STRING:B4DYB4 Ensembl:ENST00000409798
Uniprot:B4DYB4
Length = 309
Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 52/151 (34%), Positives = 76/151 (50%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 159 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 217
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
+++GVKP +D ++ + S + PP + T ++ R S+ RP
Sbjct: 218 SIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYK 277
Query: 122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VSK M+ MFG
Sbjct: 278 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 308
>UNIPROTKB|A6QPZ3 [details] [associations]
symbol:NUP35 "NUP35 protein" species:9913 "Bos taurus"
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] GO:GO:0005886 GO:GO:0031965 GO:GO:0045111
InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
GeneTree:ENSGT00390000005923 HOVERGEN:HBG060396 OMA:ANISVMQ
EMBL:DAAA02004042 EMBL:DAAA02004043 EMBL:BC149564 IPI:IPI00854522
UniGene:Bt.25158 SMR:A6QPZ3 STRING:A6QPZ3
Ensembl:ENSBTAT00000012896 InParanoid:A6QPZ3 Uniprot:A6QPZ3
Length = 266
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 52/151 (34%), Positives = 75/151 (49%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 116 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 174
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
+++GVKP +D + + S + PP + T ++ R S+ RP
Sbjct: 175 SIMIGVKPCIDKSVMENSDRCALSSPSLAFTPPIKTLGTPTQPGSAPRISTMRPLATAYK 234
Query: 122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VSK M+ MFG
Sbjct: 235 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 265
>UNIPROTKB|Q8NFH5 [details] [associations]
symbol:NUP35 "Nucleoporin NUP53" species:9606 "Homo
sapiens" [GO:0015031 "protein transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0008645 "hexose transport" evidence=TAS] [GO:0010827
"regulation of glucose transport" evidence=TAS] [GO:0015758
"glucose transport" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0055085 "transmembrane transport" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_111217 Reactome:REACT_15518 InterPro:IPR017389
PIRSF:PIRSF038119 GO:GO:0005886 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0016032 GO:GO:0044281 GO:GO:0015031
GO:GO:0005975 GO:GO:0031965 GO:GO:0005643 GO:GO:0019221
GO:GO:0015758 GO:GO:0010827 GO:GO:0055085 GO:GO:0045111
GO:GO:0051028 EMBL:AC064871 InterPro:IPR007846 Pfam:PF05172
PROSITE:PS51472 eggNOG:NOG253574 KO:K14313 CTD:129401
HOGENOM:HOG000231921 HOVERGEN:HBG060396 OMA:ANISVMQ EMBL:AF514993
EMBL:AF411516 EMBL:AC079249 EMBL:BC047029 EMBL:BC061698
IPI:IPI00329650 RefSeq:NP_612142.2 UniGene:Hs.180591
ProteinModelPortal:Q8NFH5 SMR:Q8NFH5 DIP:DIP-47308N STRING:Q8NFH5
PhosphoSite:Q8NFH5 DMDM:74730292 PaxDb:Q8NFH5 PeptideAtlas:Q8NFH5
PRIDE:Q8NFH5 DNASU:129401 Ensembl:ENST00000295119 GeneID:129401
KEGG:hsa:129401 UCSC:uc002upf.3 GeneCards:GC02P183982
HGNC:HGNC:29797 HPA:HPA018401 HPA:HPA018410 HPA:HPA018441
MIM:608140 neXtProt:NX_Q8NFH5 PharmGKB:PA134861481
InParanoid:Q8NFH5 OrthoDB:EOG43N7D2 GenomeRNAi:129401 NextBio:82574
ArrayExpress:Q8NFH5 Bgee:Q8NFH5 CleanEx:HS_NUP35
Genevestigator:Q8NFH5 GermOnline:ENSG00000163002 Uniprot:Q8NFH5
Length = 326
Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/151 (34%), Positives = 76/151 (50%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 176 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 234
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
+++GVKP +D ++ + S + PP + T ++ R S+ RP
Sbjct: 235 SIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYK 294
Query: 122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VSK M+ MFG
Sbjct: 295 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325
>RGD|1303069 [details] [associations]
symbol:Nup35 "nucleoporin 35" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISO]
[GO:0015031 "protein transport" evidence=IEA] [GO:0015288 "porin
activity" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0046930 "pore complex"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR017389 PIRSF:PIRSF038119
RGD:1303069 GO:GO:0005886 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0055085 GO:GO:0045111 GO:GO:0051028 InterPro:IPR007846
Pfam:PF05172 PROSITE:PS51472 eggNOG:NOG253574
GeneTree:ENSGT00390000005923 KO:K14313 CTD:129401
HOGENOM:HOG000231921 HOVERGEN:HBG060396 OMA:ANISVMQ
OrthoDB:EOG43N7D2 EMBL:BC078914 IPI:IPI00372778
RefSeq:NP_001004229.1 UniGene:Rn.203627 ProteinModelPortal:Q68FY1
SMR:Q68FY1 STRING:Q68FY1 PhosphoSite:Q68FY1 PRIDE:Q68FY1
Ensembl:ENSRNOT00000012628 GeneID:295692 KEGG:rno:295692
UCSC:RGD:1303069 InParanoid:Q68FY1 NextBio:639903
ArrayExpress:Q68FY1 Genevestigator:Q68FY1
GermOnline:ENSRNOG00000009290 Uniprot:Q68FY1
Length = 325
Score = 169 (64.5 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 51/151 (33%), Positives = 76/151 (50%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 175 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 233
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
+++GVKP +D + + + S + PP + T ++ R S+ RP
Sbjct: 234 SIMIGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQPGSTPRVSTMRPLATAYK 293
Query: 122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VS+ M+ MFG
Sbjct: 294 ASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324
>UNIPROTKB|E1C8U1 [details] [associations]
symbol:NUP35 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0055085 "transmembrane transport" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] InterPro:IPR017389 PIRSF:PIRSF038119
GO:GO:0005886 GO:GO:0031965 GO:GO:0055085 GO:GO:0045111
InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
GeneTree:ENSGT00390000005923 OMA:ANISVMQ EMBL:AADN02034532
IPI:IPI00595017 ProteinModelPortal:E1C8U1
Ensembl:ENSGALT00000004236 Uniprot:E1C8U1
Length = 320
Score = 166 (63.5 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 51/151 (33%), Positives = 75/151 (49%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G
Sbjct: 170 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 228
Query: 69 VLIVGVKPLDPMQRQALNERINSQGFMTL-PPPS----SRTSELNSFRASS-RPYYLQ-N 121
+++GVKP ER ++ ++ PPS + N+ + S+ RP
Sbjct: 229 SIMIGVKPCVDKSVMENFERSSASSMPSVFTPPSKIVGTPVQPANTTKISTMRPLATAYK 288
Query: 122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VSK M+ +FG
Sbjct: 289 ASTSDYQVVSDRQTPKKDESIVSKAMEYVFG 319
>FB|FBgn0030943 [details] [associations]
symbol:CG6540 species:7227 "Drosophila melanogaster"
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0055085
"transmembrane transport" evidence=IEA] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0006999 "nuclear pore organization"
evidence=ISS] [GO:0044613 "nuclear pore central transport channel"
evidence=ISS] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR017389 PIRSF:PIRSF038119
GO:GO:0005811 EMBL:AE014298 GO:GO:0031965 GO:GO:0055085
GO:GO:0007476 InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
eggNOG:NOG253574 GeneTree:ENSGT00390000005923 KO:K14313
EMBL:AY061318 RefSeq:NP_573314.1 UniGene:Dm.3645 SMR:Q9VWS2
STRING:Q9VWS2 EnsemblMetazoa:FBtr0074601 GeneID:32851
KEGG:dme:Dmel_CG6540 UCSC:CG6540-RA FlyBase:FBgn0030943
InParanoid:Q9VWS2 OMA:DKALNYN OrthoDB:EOG45HQD4 GenomeRNAi:32851
NextBio:780708 Uniprot:Q9VWS2
Length = 331
Score = 166 (63.5 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 45/149 (30%), Positives = 75/149 (50%)
Query: 4 ISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNG 63
+S F + F FPP ++VL+ F CG I+ V P++ NWM++ Y +R ++ KAL+ N
Sbjct: 188 LSDFWVTIFGFPPGAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNE 247
Query: 64 MQINGVLIVGVKPLDPMQRQALN-ERINSQGFMTLPPPSSRTSELNSFRASSRPYYL-QN 121
I G ++VGV R ++ E I S + P + S + F S + Y L +
Sbjct: 248 KIIAGNVMVGVSRCT--DRSVIDKENIGSVPNAEIGDPPTSPSAIRPF--SQQSYKLARK 303
Query: 122 GHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
+ + Q + + ++ K MDL+FG
Sbjct: 304 DNIISPQKD--VPQKSSGLMDKAMDLIFG 330
>POMBASE|SPAC19E9.01c [details] [associations]
symbol:nup40 "nucleoporin Nup40" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IDA] [GO:0006407 "rRNA export
from nucleus" evidence=ISO] [GO:0007094 "mitotic spindle assembly
checkpoint" evidence=IMP] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IDA]
[GO:0051028 "mRNA transport" evidence=IEA] PomBase:SPAC19E9.01c
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0007094 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0051028 GO:GO:0006407 PIR:T37969
RefSeq:NP_593304.1 ProteinModelPortal:O13838 STRING:O13838
PRIDE:O13838 EnsemblFungi:SPAC19E9.01c.1 GeneID:2542466
KEGG:spo:SPAC19E9.01c eggNOG:NOG43865 OrthoDB:EOG4XH38N
NextBio:20803522 InterPro:IPR007846 Pfam:PF05172 PROSITE:PS51472
Uniprot:O13838
Length = 371
Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 5 SSFLIVPFRFPPADTNLVLREFEKCGVILKH----------VP--GPRDANWMHILYQNR 52
S+ ++ F FPP TN V+ EF + G I+ P GP NW+ + Y
Sbjct: 168 SNTSVIVFGFPPELTNQVIAEFSRFGTIISENSLTASSAGFTPSKGPISGNWLQLTYAEP 227
Query: 53 SDAQKALSKNGMQINGVLIVGV--KPLDPMQRQALNERINSQGFMTLPPPSSRTS 105
S A KA+ NGM IN +VG P + + R +++ SS TS
Sbjct: 228 SSAAKAVLSNGMLINDSFMVGCIYSPAEAKEHVPKTLRNSNKDLEMTDASSSETS 282
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 151 151 0.00097 104 3 11 22 0.47 31
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 579 (62 KB)
Total size of DFA: 132 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.71u 0.09s 16.80t Elapsed: 00:00:02
Total cpu time: 16.71u 0.09s 16.80t Elapsed: 00:00:02
Start: Fri May 10 06:04:34 2013 End: Fri May 10 06:04:36 2013