BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031896
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6X9|NUP53_DANRE Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1
Length = 308
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
I F FPPA + +L +F + G ILKHV NWMH+ YQ++ A+KALSK+G
Sbjct: 161 ITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGE 219
Query: 69 VLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPYYLQ-NGHT 124
+++GVKP +D ++L++ S T P P + + L++ R+ RP +
Sbjct: 220 AIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASS 279
Query: 125 STGQSGGAIASPAK--SMVSKIMDLMFG 150
S Q +P K S VSK M+ MFG
Sbjct: 280 SDYQVVSDQQTPKKDESFVSKAMEYMFG 307
>sp|Q8NFH5|NUP53_HUMAN Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1
Length = 326
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 27/165 (16%)
Query: 3 LISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKN 62
L S++ V F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+
Sbjct: 171 LDDSWVTV-FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKD 228
Query: 63 GMQINGVLIVGVKP------LDPMQRQALNE-------RINSQGFMTLPPPSSRTSEL-- 107
G +++GVKP ++ R AL+ I + G T P + R S +
Sbjct: 229 GRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRP 288
Query: 108 --NSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
+++AS+ Y + + + + +S+VSK M+ MFG
Sbjct: 289 LATAYKASTSDYQVISDRQTPKKD--------ESLVSKAMEYMFG 325
>sp|Q66IJ0|NUP53_XENTR Nucleoporin NUP53 OS=Xenopus tropicalis GN=nup35 PE=2 SV=1
Length = 330
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
F FP A + +L +F + G I+KHV + NWMHI YQ++ A+KALSK+G ++
Sbjct: 182 FGFPQASASYILLQFAQYGNIIKHVMS-NNGNWMHIQYQSKLQARKALSKDGRIFGESIM 240
Query: 72 VGVKPLDPMQRQALNERINSQGFMTL-PPP----SSRTSELNSFRASS-RPY--YLQNGH 123
+GVKP E++++ ++ PP + T + + RA+S RP +
Sbjct: 241 IGVKPCIDKSVMEATEKVSTPTVSSVFTPPVKNIGTPTQSVGTPRAASMRPLAATYKTPA 300
Query: 124 TSTGQSGGAIASPAK--SMVSKIMDLMFG 150
++ Q +P K S+VSK M+ MFG
Sbjct: 301 SADYQVVADKQAPRKDESIVSKAMEYMFG 329
>sp|Q68FY1|NUP53_RAT Nucleoporin NUP53 OS=Rattus norvegicus GN=Nup35 PE=1 SV=1
Length = 325
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 26/156 (16%)
Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G ++
Sbjct: 178 FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 236
Query: 72 VGVKPL---DPMQRQ----------ALNERINSQGFMTLPPPSSRTSEL----NSFRASS 114
+GVKP + M+ A I + G T P + R S + +++AS+
Sbjct: 237 IGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQPGSTPRVSTMRPLATAYKAST 296
Query: 115 RPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
Y + + + + +S+VS+ M+ MFG
Sbjct: 297 SDYQVISDRQTPKKD--------ESLVSRAMEYMFG 324
>sp|Q8R4R6|NUP53_MOUSE Nucleoporin NUP53 OS=Mus musculus GN=Nup35 PE=1 SV=2
Length = 325
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
F FP A + +L +F + G ILKHV NWMHI YQ++ A+KALSK+G ++
Sbjct: 178 FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 236
Query: 72 VGVKP------LDPMQRQALNERINSQGFMT------LPPPSSRTSELNSFRASSRPYYL 119
+GVKP ++ R L+ S F T P S T +++ R + Y
Sbjct: 237 IGVKPCIDKNVMENSDRGVLSS--PSLAFTTPIRTLGTPTQSGSTPRVSTMRPLATAY-- 292
Query: 120 QNGHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
TS Q +P K S+VS+ M+ MFG
Sbjct: 293 -KASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324
>sp|O13838|NUP40_SCHPO Nucleoporin nup40 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup40 PE=1 SV=1
Length = 371
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKH------------VPGPRDANWMHILYQNRSDAQ 56
++ F FPP TN V+ EF + G I+ GP NW+ + Y S A
Sbjct: 172 VIVFGFPPELTNQVIAEFSRFGTIISENSLTASSAGFTPSKGPISGNWLQLTYAEPSSAA 231
Query: 57 KALSKNGMQINGVLIVGV 74
KA+ NGM IN +VG
Sbjct: 232 KAVLSNGMLINDSFMVGC 249
>sp|Q09601|NUP53_CAEEL Nucleoporin NUP53 OS=Caenorhabditis elegans GN=npp-19 PE=3 SV=2
Length = 381
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
+ F F P+ +++L F + G ++ H P N++H+ Y + AQ+A+S+NG ++
Sbjct: 201 VTVFGFQPSQVSILLNLFSRHGEVVSH-QTPSKGNFIHMRYSCVTHAQQAISRNGTLLDQ 259
Query: 69 VLIVGV 74
+GV
Sbjct: 260 DTFIGV 265
>sp|A6VF30|GLMU_PSEA7 Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain PA7)
GN=glmU PE=3 SV=1
Length = 454
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 36 VPGPRDANWMHILYQNRSDAQKALSKN-GMQI-NGVLIVGVKPLDPMQRQALNERI 89
VPG R A+W+ L + + + L+ M + +G+++ +PLD M+ Q +N+R+
Sbjct: 172 VPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRM 227
>sp|Q9HT22|GLMU_PSEAE Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glmU PE=3
SV=1
Length = 454
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 36 VPGPRDANWMHILYQNRSDAQKALSKN-GMQI-NGVLIVGVKPLDPMQRQALNERI 89
VPG R A+W+ L + + + L+ M + +G+++ +PLD M+ Q +N+R+
Sbjct: 172 VPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRM 227
>sp|Q02DF6|GLMU_PSEAB Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glmU PE=3 SV=1
Length = 454
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 36 VPGPRDANWMHILYQNRSDAQKALSKN-GMQI-NGVLIVGVKPLDPMQRQALNERI 89
VPG R A+W+ L + + + L+ M + +G+++ +PLD M+ Q +N+R+
Sbjct: 172 VPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRM 227
>sp|B7V789|GLMU_PSEA8 Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain LESB58)
GN=glmU PE=3 SV=1
Length = 454
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 36 VPGPRDANWMHILYQNRSDAQKALSKN-GMQI-NGVLIVGVKPLDPMQRQALNERI 89
VPG R A+W+ L + + + L+ M + +G+++ +PLD M+ Q +N+R+
Sbjct: 172 VPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRM 227
>sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana
GN=NFXL1 PE=2 SV=1
Length = 1188
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 97 LPPPSSRTSELNSFRASSRPYYLQNGHTSTG 127
LPP + R SE ++SRP YLQ H ++G
Sbjct: 40 LPPNTDRNSETLDAGSASRPVYLQRQHNASG 70
>sp|Q12WC7|HIS1_METBU ATP phosphoribosyltransferase OS=Methanococcoides burtonii (strain
DSM 6242) GN=hisG PE=3 SV=1
Length = 284
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 111 RASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
RA+ P Y+Q+G G +G + S +S V ++DL +G
Sbjct: 50 RAADIPEYVQDGAADVGITGLDLISETESDVEMLLDLKYG 89
>sp|C3K1E4|GLMU_PSEFS Bifunctional protein GlmU OS=Pseudomonas fluorescens (strain SBW25)
GN=glmU PE=3 SV=1
Length = 455
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 36 VPGPRDANWMHILYQNRSDAQKALSKN-GMQI-NGVLIVGVKPLDPMQRQALNER 88
VP + A+WM L N + + L+ M + +G+L+ +P DPM+ Q N+R
Sbjct: 172 VPANKLADWMSRLSNNNAQGEYYLTDVIEMAVSDGLLVATEQPHDPMEVQGANDR 226
>sp|P45997|HIFC2_HAEIF Outer membrane usher protein HifC OS=Haemophilus influenzae GN=hifC
PE=3 SV=1
Length = 837
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 55 AQKALSKNGMQINGVLIVGVKPLDPMQ-RQALNERINSQGFMTLPPPSSRTSELNSFRAS 113
A + S++G IN L V + Q +N N+QG+ + + + + S+RAS
Sbjct: 579 ADSSYSRSGNDINQRLGVNGSFGERHQWSYGINASRNNQGYRSYDANLAHNNSIGSYRAS 638
Query: 114 SRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI 151
L+N TS G SG +A +S+ + F I
Sbjct: 639 YSRDSLKNRSTSLGASGAVVAHKYGITLSQPVGESFAI 676
>sp|P33397|HIFC1_HAEIF Outer membrane usher protein HifC OS=Haemophilus influenzae GN=hifC
PE=3 SV=2
Length = 837
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 55 AQKALSKNGMQINGVLIVGVKPLDPMQ-RQALNERINSQGFMTLPPPSSRTSELNSFRAS 113
A + S++G IN L V + Q +N N+QG+ + S + + S+RAS
Sbjct: 579 ADSSYSRSGNDINQRLGVNGSFGERHQWSYGINASRNNQGYRSYDGNLSHNNSIGSYRAS 638
Query: 114 SRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI 151
L+N TS G SG +A +S+ + F I
Sbjct: 639 YSRDSLKNRSTSLGVSGAVVAHKYGITLSQPVGESFAI 676
>sp|A0KIB5|DAPE_AERHH Succinyl-diaminopimelate desuccinylase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dapE
PE=3 SV=1
Length = 375
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 74 VKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSG 130
V PLD + + ER+ GF+ P T+ L + R S P + GHT +G
Sbjct: 17 VTPLDEGCQTLMAERLAKLGFVIEPMVFEDTTNLWARRGSEGPLFCFAGHTDVVPAG 73
>sp|P45998|HIFC3_HAEIF Outer membrane usher protein HifC OS=Haemophilus influenzae GN=hifC
PE=3 SV=1
Length = 837
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 55 AQKALSKNGMQINGVLIVGVKPLDPMQ-RQALNERINSQGFMTLPPPSSRTSELNSFRAS 113
A + S++G IN L V + Q +N N+QG+ + S + + S+RAS
Sbjct: 579 ADSSYSRSGNDINQRLGVNGSFGERHQWSYGINASRNNQGYRSYDGNLSHNNSIGSYRAS 638
Query: 114 SRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI 151
L+N S G SG +A +S+ + F I
Sbjct: 639 YSRDSLKNRSISLGASGAVVAHKHGITLSQPVGESFAI 676
>sp|C4R5P7|CCM1_PICPG Mitochondrial group I intron splicing factor CCM1 OS=Komagataella
pastoris (strain GS115 / ATCC 20864) GN=CCM1 PE=3 SV=1
Length = 725
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGV-- 69
F FP + L + G ++KH+ P + W +L D +K NG+ V
Sbjct: 140 FSFPSPNLTLPEKVIHHIGPLVKHISNPENIQWGRLLL----DLEKNQGFNGLSAVDVTR 195
Query: 70 LIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYY 118
LI + + Q +L I+ F + P ++L S R YY
Sbjct: 196 LIQNIPKEEKYQHMSL---IHEMMFNSGISPDRYLTDLMMTAFSERSYY 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,246,995
Number of Sequences: 539616
Number of extensions: 2050821
Number of successful extensions: 4980
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4960
Number of HSP's gapped (non-prelim): 23
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)