Query 031896
Match_columns 151
No_of_seqs 125 out of 173
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wwh_A Nucleoporin 35, nucleop 100.0 1.1E-34 3.8E-39 216.8 9.3 85 3-88 21-106 (119)
2 3p3d_A Nucleoporin 53; structu 100.0 2.3E-33 7.7E-38 212.8 8.4 92 5-97 6-121 (132)
3 1whw_A Hypothetical protein ri 98.4 2.7E-06 9.3E-11 57.9 10.5 76 4-80 6-88 (99)
4 2dgs_A DAZ-associated protein 98.4 2.2E-06 7.4E-11 58.6 9.5 75 4-79 8-88 (99)
5 3ucg_A Polyadenylate-binding p 98.4 9.7E-07 3.3E-11 58.8 7.4 74 5-79 5-84 (89)
6 2cpi_A CCR4-NOT transcription 98.4 6.5E-07 2.2E-11 63.1 6.7 78 2-80 11-101 (111)
7 3s7r_A Heterogeneous nuclear r 98.4 2.4E-06 8.3E-11 56.9 9.1 71 5-76 10-86 (87)
8 4a8x_A RNA-binding protein wit 98.4 2.3E-06 7.9E-11 56.7 8.8 74 5-79 3-84 (88)
9 3mdf_A Peptidyl-prolyl CIS-tra 98.4 3.9E-06 1.3E-10 55.4 9.3 72 4-76 5-83 (85)
10 1x4a_A Splicing factor, argini 98.4 4.7E-06 1.6E-10 57.9 10.1 75 4-79 20-98 (109)
11 2dgu_A Heterogeneous nuclear r 98.3 4.1E-06 1.4E-10 57.8 9.6 71 5-79 10-82 (103)
12 1x4c_A Splicing factor, argini 98.3 4.8E-06 1.6E-10 58.2 10.0 72 5-79 14-92 (108)
13 2cqc_A Arginine/serine-rich sp 98.3 3.4E-06 1.2E-10 56.8 8.9 73 5-78 14-93 (95)
14 2dnp_A RNA-binding protein 14; 98.3 4.1E-06 1.4E-10 56.3 9.1 71 5-79 8-80 (90)
15 2cpy_A RNA-binding protein 12; 98.3 6.2E-06 2.1E-10 58.2 10.5 80 5-85 14-99 (114)
16 3bs9_A Nucleolysin TIA-1 isofo 98.3 3.5E-06 1.2E-10 55.8 8.5 75 4-79 4-85 (87)
17 2mss_A Protein (musashi1); RNA 98.3 1.7E-06 5.7E-11 56.2 6.8 66 9-75 2-73 (75)
18 4fxv_A ELAV-like protein 1; RN 98.3 4.8E-06 1.6E-10 58.0 9.6 74 5-79 18-98 (99)
19 2dgt_A RNA-binding protein 30; 98.3 6.3E-06 2.1E-10 55.6 9.9 72 4-79 8-81 (92)
20 2cq4_A RNA binding motif prote 98.3 3.8E-06 1.3E-10 58.8 9.0 74 6-80 25-104 (114)
21 2cqi_A Nucleolysin TIAR; RNA r 98.3 8.8E-06 3E-10 55.9 10.7 75 4-79 13-92 (103)
22 2dnz_A Probable RNA-binding pr 98.3 3.7E-06 1.3E-10 56.7 8.6 74 5-79 4-84 (95)
23 1why_A Hypothetical protein ri 98.3 4E-06 1.4E-10 57.2 8.8 73 5-79 16-92 (97)
24 2dgx_A KIAA0430 protein; RRM d 98.3 6.3E-06 2.1E-10 56.4 9.8 75 4-79 7-89 (96)
25 1x5t_A Splicing factor 3B subu 98.3 5.8E-06 2E-10 55.8 9.3 74 5-79 4-85 (96)
26 1x4g_A Nucleolysin TIAR; struc 98.3 4.8E-06 1.7E-10 58.0 9.1 73 5-79 24-98 (109)
27 3s8s_A Histone-lysine N-methyl 98.3 1.5E-05 5E-10 56.6 11.8 84 5-89 5-96 (110)
28 1oo0_B CG8781-PA, drosophila Y 98.3 6.6E-06 2.2E-10 57.1 9.7 74 5-79 25-105 (110)
29 2e5h_A Zinc finger CCHC-type a 98.3 8.4E-06 2.9E-10 54.8 9.9 72 4-76 14-92 (94)
30 2db1_A Heterogeneous nuclear r 98.3 4.4E-06 1.5E-10 59.6 8.9 83 5-88 16-106 (118)
31 2dnr_A Synaptojanin-1; RRM dom 98.3 1.5E-06 5.2E-11 61.8 6.2 62 14-79 24-85 (91)
32 2cq3_A RNA-binding protein 9; 98.3 9.5E-06 3.2E-10 55.7 10.1 74 5-79 14-92 (103)
33 2ytc_A PRE-mRNA-splicing facto 98.3 3.7E-06 1.3E-10 55.6 7.7 70 5-76 11-83 (85)
34 3md1_A Nuclear and cytoplasmic 98.3 5E-06 1.7E-10 54.6 8.3 72 7-79 2-80 (83)
35 2e5g_A U6 snRNA-specific termi 98.3 3.6E-06 1.2E-10 57.2 7.7 72 6-78 8-80 (94)
36 1wi8_A EIF-4B, eukaryotic tran 98.3 6.9E-06 2.4E-10 56.6 9.2 73 5-79 14-93 (104)
37 2lmi_A GRSF-1, G-rich sequence 98.3 2.8E-06 9.4E-11 59.4 7.2 84 4-88 9-100 (107)
38 2xnq_A Nuclear polyadenylated 98.3 8.6E-06 2.9E-10 56.1 9.6 72 4-79 20-94 (97)
39 2dnm_A SRP46 splicing factor; 98.3 4E-06 1.4E-10 57.6 7.8 75 4-79 11-92 (103)
40 2cph_A RNA binding motif prote 98.3 7.8E-06 2.7E-10 56.2 9.3 74 5-79 14-96 (107)
41 2do4_A Squamous cell carcinoma 98.2 5.8E-06 2E-10 56.5 8.5 75 4-79 15-95 (100)
42 2x1f_A MRNA 3'-END-processing 98.2 1.3E-05 4.4E-10 54.4 10.2 73 6-79 2-81 (96)
43 2cpf_A RNA binding motif prote 98.2 3.6E-06 1.2E-10 57.2 7.3 74 5-79 4-87 (98)
44 1x5u_A Splicing factor 3B subu 98.2 7.9E-06 2.7E-10 56.2 9.1 75 5-80 14-95 (105)
45 2cqb_A Peptidyl-prolyl CIS-tra 98.2 7.9E-06 2.7E-10 55.9 9.0 74 5-79 11-91 (102)
46 2rs2_A Musashi-1, RNA-binding 98.2 1E-05 3.5E-10 56.8 9.7 74 5-79 24-103 (109)
47 3ns6_A Eukaryotic translation 98.2 3.6E-06 1.2E-10 58.3 7.2 77 6-82 6-95 (100)
48 2cpj_A Non-POU domain-containi 98.2 3.6E-06 1.2E-10 57.6 7.1 74 4-79 13-88 (99)
49 2dh8_A DAZ-associated protein 98.2 2.3E-06 8E-11 59.0 6.0 75 4-79 14-94 (105)
50 1x4b_A Heterogeneous nuclear r 98.2 5.9E-06 2E-10 58.0 8.1 74 6-80 27-106 (116)
51 1s79_A Lupus LA protein; RRM, 98.2 4E-06 1.4E-10 59.0 7.2 75 4-79 9-88 (103)
52 2cq0_A Eukaryotic translation 98.2 6E-06 2E-10 56.7 7.9 75 4-79 13-94 (103)
53 2err_A Ataxin-2-binding protei 98.2 7.1E-06 2.4E-10 57.6 8.4 74 5-79 28-106 (109)
54 1p27_B RNA-binding protein 8A; 98.2 5.9E-06 2E-10 56.9 7.8 74 5-79 22-102 (106)
55 1wg5_A Heterogeneous nuclear r 98.2 6.1E-06 2.1E-10 57.3 7.9 76 4-80 13-94 (104)
56 1x5p_A Negative elongation fac 98.2 1.4E-05 4.7E-10 54.5 9.6 72 5-79 14-86 (97)
57 2ywk_A Putative RNA-binding pr 98.2 8.8E-06 3E-10 54.8 8.4 72 5-77 15-92 (95)
58 2dgo_A Cytotoxic granule-assoc 98.2 9.6E-06 3.3E-10 56.7 8.9 75 4-79 13-94 (115)
59 2cpd_A Apobec-1 stimulating pr 98.2 1.9E-05 6.7E-10 53.8 10.2 72 4-79 13-88 (99)
60 3lqv_A PRE-mRNA branch site pr 98.2 1.3E-05 4.5E-10 56.0 9.5 75 5-80 7-85 (115)
61 2krb_A Eukaryotic translation 98.2 8.8E-06 3E-10 53.8 8.1 63 7-69 2-75 (81)
62 1ufw_A Synaptojanin 2; RNP dom 98.2 1.1E-06 3.7E-11 63.1 3.7 59 14-76 33-91 (95)
63 2fy1_A RNA-binding motif prote 98.2 7.7E-06 2.6E-10 58.2 8.2 77 2-79 3-85 (116)
64 2dnq_A RNA-binding protein 4B; 98.2 1E-05 3.4E-10 54.4 8.4 71 5-79 7-79 (90)
65 3ex7_B RNA-binding protein 8A; 98.2 9.5E-06 3.2E-10 57.6 8.6 75 4-79 20-101 (126)
66 2jwn_A Embryonic polyadenylate 98.2 5E-06 1.7E-10 58.9 7.1 73 6-79 36-114 (124)
67 2la4_A Nuclear and cytoplasmic 98.2 5.2E-06 1.8E-10 56.8 6.9 71 5-77 26-98 (101)
68 2cqg_A TDP-43, TAR DNA-binding 98.2 1.7E-05 5.7E-10 54.4 9.5 75 4-80 13-93 (103)
69 2e44_A Insulin-like growth fac 98.2 4.7E-06 1.6E-10 56.4 6.4 74 6-80 15-92 (96)
70 1x5s_A Cold-inducible RNA-bind 98.2 6.9E-06 2.4E-10 56.2 7.3 74 5-79 11-91 (102)
71 1wel_A RNA-binding protein 12; 98.1 7.1E-06 2.4E-10 58.6 7.5 76 5-81 24-105 (124)
72 2nlw_A Eukaryotic translation 98.1 7E-06 2.4E-10 57.1 7.3 75 6-80 15-100 (105)
73 1l3k_A Heterogeneous nuclear r 98.1 1.4E-05 4.9E-10 59.4 9.5 75 5-80 103-183 (196)
74 1nu4_A U1A RNA binding domain; 98.1 1.2E-05 4.1E-10 54.3 8.3 76 3-79 5-88 (97)
75 2kt5_A RNA and export factor-b 98.1 1.5E-05 5.1E-10 56.6 9.0 74 5-79 34-113 (124)
76 1wf1_A RNA-binding protein RAL 98.1 7.2E-06 2.5E-10 57.2 7.1 70 6-79 27-99 (110)
77 1p1t_A Cleavage stimulation fa 98.1 6.7E-06 2.3E-10 56.3 6.8 74 6-80 8-88 (104)
78 2dgp_A Bruno-like 4, RNA bindi 98.1 1.3E-05 4.5E-10 55.1 8.2 76 4-80 11-96 (106)
79 4f25_A Polyadenylate-binding p 98.1 1.6E-05 5.3E-10 56.3 8.8 73 6-79 5-82 (115)
80 2dng_A Eukaryotic translation 98.1 1.5E-05 5E-10 54.8 8.3 73 5-79 14-92 (103)
81 2hgl_A HNRPF protein, heteroge 98.1 1E-05 3.6E-10 60.0 8.0 81 5-86 43-131 (136)
82 2hvz_A Splicing factor, argini 98.1 5.9E-06 2E-10 56.5 6.2 72 8-80 2-75 (101)
83 3beg_B Splicing factor, argini 98.1 9E-06 3.1E-10 57.6 7.3 63 5-69 15-79 (115)
84 3n9u_C Cleavage and polyadenyl 98.1 3.5E-05 1.2E-09 58.0 10.9 80 6-86 55-143 (156)
85 2do0_A HnRNP M, heterogeneous 98.1 2E-05 6.9E-10 54.8 9.0 74 5-79 14-93 (114)
86 1iqt_A AUF1, heterogeneous nuc 98.1 5.6E-06 1.9E-10 53.5 5.6 66 9-75 2-73 (75)
87 2dha_A FLJ20171 protein; RRM d 98.1 1.6E-05 5.3E-10 58.1 8.6 82 5-87 22-112 (123)
88 1whx_A Hypothetical protein ri 98.1 1.6E-05 5.6E-10 56.1 8.4 71 5-77 9-81 (111)
89 2cpz_A CUG triplet repeat RNA- 98.1 1.4E-05 4.8E-10 56.0 7.9 74 5-79 24-104 (115)
90 2jvo_A Nucleolar protein 3; nu 98.1 1.5E-05 5E-10 56.2 8.0 72 4-79 29-102 (108)
91 2cjk_A Nuclear polyadenylated 98.1 8.7E-06 3E-10 59.1 7.0 74 6-80 87-166 (167)
92 2d9p_A Polyadenylate-binding p 98.1 8.3E-06 2.8E-10 56.0 6.6 75 4-79 13-92 (103)
93 3ulh_A THO complex subunit 4; 98.1 1.9E-05 6.4E-10 54.4 8.4 72 5-77 28-105 (107)
94 2dgw_A Probable RNA-binding pr 98.1 2.3E-05 7.8E-10 52.6 8.6 73 5-79 9-86 (91)
95 2j76_E EIF-4B, EIF4B, eukaryot 98.1 5.9E-06 2E-10 56.9 5.6 74 4-79 17-97 (100)
96 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.1 4.1E-05 1.4E-09 54.7 10.3 70 5-75 62-138 (140)
97 1h2v_Z 20 kDa nuclear CAP bind 98.1 2.3E-05 7.9E-10 57.8 9.2 74 5-79 38-118 (156)
98 2dnn_A RNA-binding protein 12; 98.1 5.3E-05 1.8E-09 54.0 10.8 74 6-81 16-94 (109)
99 2hzc_A Splicing factor U2AF 65 98.1 3.1E-05 1.1E-09 51.1 8.9 65 5-70 5-81 (87)
100 3md3_A Nuclear and cytoplasmic 98.1 3.1E-05 1.1E-09 55.6 9.5 73 5-78 86-165 (166)
101 2i2y_A Fusion protein consists 98.1 1.9E-05 6.6E-10 57.8 8.4 74 5-79 72-147 (150)
102 2e5j_A Methenyltetrahydrofolat 98.1 1.5E-05 5.3E-10 54.3 7.3 73 6-79 19-93 (97)
103 2lxi_A RNA-binding protein 10; 98.0 2.8E-05 9.5E-10 53.0 8.5 73 7-80 2-83 (91)
104 1x4h_A RNA-binding protein 28; 98.0 4E-05 1.4E-09 52.9 9.5 74 5-79 14-100 (111)
105 2ek1_A RNA-binding protein 12; 98.0 1.4E-05 4.6E-10 53.9 6.7 71 6-77 15-92 (95)
106 2cpe_A RNA-binding protein EWS 98.0 3.2E-05 1.1E-09 53.8 8.8 75 4-79 13-102 (113)
107 2dgv_A HnRNP M, heterogeneous 98.0 1.4E-05 4.9E-10 53.4 6.8 74 5-79 7-85 (92)
108 2jrs_A RNA-binding protein 39; 98.0 1.8E-05 6.3E-10 55.5 7.5 74 5-79 25-105 (108)
109 2dnh_A Bruno-like 5, RNA bindi 98.0 2E-05 6.8E-10 54.1 7.3 75 5-79 14-96 (105)
110 2kn4_A Immunoglobulin G-bindin 98.0 4.6E-05 1.6E-09 55.9 9.6 74 5-79 69-149 (158)
111 1b7f_A Protein (SXL-lethal pro 98.0 4.7E-05 1.6E-09 55.1 9.5 74 5-79 2-82 (168)
112 2cqh_A IGF-II mRNA-binding pro 98.0 1.7E-05 5.9E-10 53.4 6.7 73 5-79 7-82 (93)
113 2khc_A Testis-specific RNP-typ 98.0 2.7E-05 9.4E-10 54.6 8.0 70 5-75 39-115 (118)
114 2cqd_A RNA-binding region cont 98.0 6.9E-05 2.4E-09 52.4 10.0 75 4-79 15-95 (116)
115 2dis_A Unnamed protein product 98.0 4.4E-05 1.5E-09 52.6 8.9 74 5-79 7-91 (109)
116 1l3k_A Heterogeneous nuclear r 98.0 3.8E-05 1.3E-09 57.1 9.0 74 5-79 12-91 (196)
117 2fc9_A NCL protein; structure 98.0 6.5E-05 2.2E-09 51.2 9.6 73 5-79 14-90 (101)
118 2ghp_A U4/U6 snRNA-associated 98.0 4.1E-05 1.4E-09 60.9 9.7 74 5-79 209-290 (292)
119 1u6f_A Tcubp1, RNA-binding pro 98.0 3.9E-05 1.3E-09 55.2 8.7 74 5-79 41-121 (139)
120 1qm9_A Polypyrimidine tract-bi 98.0 2.1E-05 7.1E-10 59.2 7.5 74 5-79 2-78 (198)
121 2kxn_B Transformer-2 protein h 98.0 1.3E-05 4.5E-10 58.3 6.1 74 5-79 45-125 (129)
122 1wez_A HnRNP H', FTP-3, hetero 98.0 8.1E-06 2.8E-10 57.0 4.6 73 5-79 14-91 (102)
123 2kvi_A Nuclear polyadenylated 98.0 1.6E-05 5.3E-10 54.3 5.9 71 4-78 8-81 (96)
124 1fxl_A Paraneoplastic encephal 97.9 5.2E-05 1.8E-09 54.5 9.0 74 5-79 1-81 (167)
125 1fje_B Nucleolin RBD12, protei 97.9 6.7E-05 2.3E-09 55.0 9.6 74 5-79 98-173 (175)
126 1fjc_A Nucleolin RBD2, protein 97.9 2.4E-05 8.2E-10 52.8 6.6 74 5-79 15-90 (96)
127 1rk8_A CG8781-PA, CG8781-PA pr 97.9 2.8E-05 9.6E-10 58.1 7.6 74 5-79 71-151 (165)
128 2la6_A RNA-binding protein FUS 97.9 4.6E-05 1.6E-09 51.9 8.0 71 5-76 12-97 (99)
129 2qfj_A FBP-interacting repress 97.9 3.2E-05 1.1E-09 58.3 7.7 74 5-79 124-204 (216)
130 2cqp_A RNA-binding protein 12; 97.9 3.4E-05 1.2E-09 52.3 6.9 72 5-77 14-92 (98)
131 1x4e_A RNA binding motif, sing 97.9 1.3E-05 4.5E-10 53.0 4.7 66 5-70 4-76 (85)
132 4f02_A Polyadenylate-binding p 97.9 8.2E-05 2.8E-09 57.3 9.9 74 6-80 103-181 (213)
133 2div_A TRNA selenocysteine ass 97.9 4.5E-05 1.6E-09 51.7 7.5 66 5-70 8-81 (99)
134 3md3_A Nuclear and cytoplasmic 97.9 7.3E-05 2.5E-09 53.6 8.9 71 8-79 2-78 (166)
135 2yh0_A Splicing factor U2AF 65 97.9 3.7E-05 1.3E-09 57.2 7.3 75 5-80 113-194 (198)
136 1qm9_A Polypyrimidine tract-bi 97.9 3.4E-05 1.2E-09 57.9 7.1 72 6-78 120-195 (198)
137 2adc_A Polypyrimidine tract-bi 97.9 7.9E-05 2.7E-09 58.0 9.2 73 6-79 151-227 (229)
138 2adc_A Polypyrimidine tract-bi 97.9 6.4E-05 2.2E-09 58.5 8.6 74 5-79 33-109 (229)
139 3v4m_A Splicing factor U2AF 65 97.8 7.7E-05 2.6E-09 52.7 8.2 60 20-80 30-97 (105)
140 1fxl_A Paraneoplastic encephal 97.8 5.3E-05 1.8E-09 54.4 7.4 65 5-69 87-158 (167)
141 2bz2_A Negative elongation fac 97.8 6E-05 2E-09 54.3 7.6 72 5-79 38-110 (121)
142 2jvr_A Nucleolar protein 3; RN 97.8 0.00013 4.5E-09 52.2 9.4 73 5-78 27-103 (111)
143 2lea_A Serine/arginine-rich sp 97.8 4.5E-05 1.5E-09 55.7 7.0 74 5-79 46-126 (135)
144 3pgw_A U1-A; protein-RNA compl 97.8 0.00012 4.2E-09 57.9 10.0 71 5-76 206-279 (282)
145 2g4b_A Splicing factor U2AF 65 97.8 6.3E-05 2.2E-09 54.7 7.3 71 6-77 94-171 (172)
146 3p5t_L Cleavage and polyadenyl 97.8 2.1E-05 7.1E-10 53.0 4.4 71 8-79 3-82 (90)
147 2ghp_A U4/U6 snRNA-associated 97.8 6.9E-05 2.3E-09 59.7 8.1 71 5-76 40-114 (292)
148 2xs2_A Deleted in azoospermia- 97.8 3.2E-05 1.1E-09 52.9 5.3 72 5-78 8-84 (102)
149 2pe8_A Splicing factor 45; RRM 97.8 0.00011 3.6E-09 52.0 8.0 62 17-79 25-93 (105)
150 2dit_A HIV TAT specific factor 97.8 0.00022 7.5E-09 50.0 9.4 60 20-80 41-102 (112)
151 3s6e_A RNA-binding protein 39; 97.8 0.00015 5.2E-09 52.3 8.7 61 19-80 31-93 (114)
152 2cpx_A Hypothetical protein FL 97.8 6.7E-05 2.3E-09 52.2 6.5 74 5-79 24-104 (115)
153 3sde_A Paraspeckle component 1 97.8 0.00011 3.9E-09 58.3 8.7 72 4-77 20-93 (261)
154 1uaw_A Mouse-musashi-1; RNP-ty 97.8 4.7E-05 1.6E-09 49.2 5.3 68 8-76 2-75 (77)
155 2cjk_A Nuclear polyadenylated 97.7 0.00016 5.5E-09 52.3 8.7 72 6-79 3-80 (167)
156 2a3j_A U1 small nuclear ribonu 97.7 0.00015 5.1E-09 53.0 8.4 74 5-79 28-109 (127)
157 1x5o_A RNA binding motif, sing 97.7 0.00012 4.1E-09 50.9 7.4 64 5-68 24-93 (114)
158 2g4b_A Splicing factor U2AF 65 97.7 0.00016 5.6E-09 52.5 8.4 72 5-78 3-86 (172)
159 3pgw_A U1-A; protein-RNA compl 97.7 0.00022 7.5E-09 56.4 9.8 74 3-77 6-87 (282)
160 2hgm_A HNRPF protein, heteroge 97.7 6.6E-05 2.3E-09 55.2 6.3 75 4-80 40-121 (126)
161 2dhg_A TRNA selenocysteine ass 97.7 3.6E-05 1.2E-09 52.7 4.6 73 5-78 8-88 (104)
162 2wbr_A GW182, gawky, LD47780P; 97.7 0.00047 1.6E-08 48.6 10.4 77 5-83 6-84 (89)
163 2qfj_A FBP-interacting repress 97.7 0.00018 6E-09 54.2 8.5 71 6-77 28-105 (216)
164 1b7f_A Protein (SXL-lethal pro 97.7 0.00011 3.7E-09 53.1 7.0 64 5-68 88-158 (168)
165 2f3j_A RNA and export factor b 97.7 0.00014 4.8E-09 55.6 8.0 74 5-79 87-166 (177)
166 3smz_A Protein raver-1, ribonu 97.7 9.2E-05 3.1E-09 58.7 7.1 75 5-80 183-264 (284)
167 1fj7_A Nucleolin RBD1, protein 97.7 0.0001 3.5E-09 50.2 6.3 74 5-79 16-94 (101)
168 2ki2_A SS-DNA binding protein 97.7 3.5E-05 1.2E-09 51.4 3.9 72 7-80 2-80 (90)
169 2voo_A Lupus LA protein; RNA-b 97.7 0.00016 5.5E-09 55.9 8.1 73 6-79 109-186 (193)
170 3d2w_A TAR DNA-binding protein 97.7 0.00057 2E-08 46.2 10.0 75 3-80 8-84 (89)
171 3tyt_A Heterogeneous nuclear r 97.6 0.00038 1.3E-08 54.1 10.0 73 5-78 3-78 (205)
172 2cq1_A PTB-like protein L; RRM 97.6 0.00034 1.1E-08 49.1 8.8 73 5-79 14-90 (101)
173 1wf0_A TDP-43, TAR DNA-binding 97.6 0.00017 5.7E-09 48.1 6.4 73 5-79 4-77 (88)
174 3egn_A RNA-binding protein 40; 97.6 0.00031 1E-08 50.9 8.2 74 5-79 44-129 (143)
175 2fc8_A NCL protein; structure 97.6 0.00042 1.4E-08 47.0 8.3 74 5-79 14-91 (102)
176 2yh0_A Splicing factor U2AF 65 97.6 0.00033 1.1E-08 52.0 8.3 73 5-79 3-87 (198)
177 2hgn_A Heterogeneous nuclear r 97.6 3.7E-05 1.3E-09 57.3 3.0 73 5-79 45-122 (139)
178 3nmr_A Cugbp ELAV-like family 97.6 0.0002 7E-09 51.8 6.9 73 5-77 94-174 (175)
179 1jmt_A Splicing factor U2AF 35 97.6 0.00023 8E-09 50.0 6.9 54 20-74 41-100 (104)
180 1wex_A Hypothetical protein (r 97.5 0.00066 2.3E-08 47.8 9.1 73 5-79 14-90 (104)
181 3q2s_C Cleavage and polyadenyl 97.5 0.00036 1.2E-08 55.4 8.5 80 5-85 67-155 (229)
182 1sjq_A Polypyrimidine tract-bi 97.5 0.00048 1.6E-08 49.3 8.3 71 5-77 15-89 (105)
183 1wg1_A KIAA1579 protein, homol 97.5 0.00028 9.5E-09 47.2 6.7 70 5-77 4-75 (88)
184 3pgw_S U1-70K; protein-RNA com 97.5 0.00045 1.5E-08 60.0 9.6 73 6-79 102-181 (437)
185 3ue2_A Poly(U)-binding-splicin 97.5 0.00015 5.2E-09 52.5 5.6 61 18-79 38-108 (118)
186 3u1l_A PRE-mRNA-splicing facto 97.5 0.00024 8.2E-09 57.7 7.2 72 6-79 134-228 (240)
187 2cq2_A Hypothetical protein LO 97.5 0.00041 1.4E-08 50.4 7.5 60 6-66 25-88 (114)
188 1fje_B Nucleolin RBD12, protei 97.4 0.00046 1.6E-08 50.4 6.9 73 5-79 12-90 (175)
189 3smz_A Protein raver-1, ribonu 97.3 0.0017 5.8E-08 51.3 10.1 74 6-80 95-175 (284)
190 4f02_A Polyadenylate-binding p 97.3 0.0015 5.1E-08 50.1 9.2 70 7-77 16-92 (213)
191 2e5i_A Heterogeneous nuclear r 97.3 0.0013 4.4E-08 48.2 8.3 70 8-78 27-100 (124)
192 2dnl_A Cytoplasmic polyadenyla 97.3 0.0011 3.7E-08 46.5 7.6 65 5-70 7-79 (114)
193 3nmr_A Cugbp ELAV-like family 97.3 0.00093 3.2E-08 48.3 7.5 75 5-79 2-87 (175)
194 2lcw_A RNA-binding protein FUS 96.3 4.3E-05 1.5E-09 53.6 0.0 75 5-80 6-95 (116)
195 2ad9_A Polypyrimidine tract-bi 97.2 0.00086 3E-08 48.9 7.0 74 4-79 29-106 (119)
196 1x4d_A Matrin 3; structural ge 97.1 0.0033 1.1E-07 44.3 8.7 72 5-78 14-90 (102)
197 1x4f_A Matrin 3; structural ge 97.1 0.0011 3.7E-08 47.9 6.0 72 5-78 24-100 (112)
198 3zzy_A Polypyrimidine tract-bi 97.1 0.0021 7.3E-08 47.6 7.7 72 7-78 29-104 (130)
199 2lkz_A RNA-binding protein 5; 97.1 0.0022 7.4E-08 44.4 7.3 71 7-78 10-93 (95)
200 2d9o_A DNAJ (HSP40) homolog, s 97.0 0.0023 7.8E-08 45.0 6.9 59 18-78 30-88 (100)
201 2m2b_A RNA-binding protein 10; 97.0 0.00051 1.8E-08 49.3 3.6 73 5-79 22-107 (131)
202 3sde_A Paraspeckle component 1 97.0 0.002 6.8E-08 51.0 7.1 73 6-79 96-178 (261)
203 3r27_A HnRNP L, heterogeneous 96.9 0.0049 1.7E-07 43.7 8.1 69 5-75 20-92 (100)
204 1sjr_A Polypyrimidine tract-bi 96.9 0.0033 1.1E-07 48.4 7.5 73 7-79 47-123 (164)
205 3tyt_A Heterogeneous nuclear r 96.8 0.0032 1.1E-07 48.8 7.3 63 7-69 124-193 (205)
206 2diu_A KIAA0430 protein; struc 96.8 0.0038 1.3E-07 44.5 6.9 61 5-70 8-75 (96)
207 2j8a_A Histone-lysine N-methyl 96.8 0.0051 1.8E-07 46.4 7.9 72 7-79 3-95 (136)
208 1owx_A Lupus LA protein, SS-B, 96.2 0.043 1.5E-06 40.2 9.6 76 2-79 14-95 (121)
209 3dxb_A Thioredoxin N-terminall 96.1 0.0088 3E-07 46.0 5.4 61 18-79 142-212 (222)
210 3tht_A Alkylated DNA repair pr 95.5 0.031 1E-06 47.5 6.9 54 12-66 26-81 (345)
211 2dhx_A Poly (ADP-ribose) polym 93.6 0.37 1.3E-05 34.7 7.7 72 5-80 7-84 (104)
212 1whv_A Poly(A)-specific ribonu 92.6 0.28 9.7E-06 35.1 5.9 53 5-61 14-68 (100)
213 3pq1_A Poly(A) RNA polymerase; 91.6 0.1 3.5E-06 46.1 3.1 64 6-69 53-116 (464)
214 2l9w_A U4/U6 snRNA-associated- 90.5 1.4 4.8E-05 32.3 7.8 77 5-83 20-103 (117)
215 3ctr_A Poly(A)-specific ribonu 89.3 0.29 9.8E-06 35.1 3.2 52 6-61 5-58 (101)
216 1wey_A Calcipressin 1; structu 68.5 9.8 0.00034 27.1 5.2 59 16-76 20-80 (104)
217 3d45_A Poly(A)-specific ribonu 42.9 63 0.0022 28.2 7.0 50 9-61 442-492 (507)
218 2f06_A Conserved hypothetical 35.5 54 0.0018 22.9 4.6 51 16-66 83-135 (144)
219 3hdo_A Histidinol-phosphate am 35.4 1.2E+02 0.0042 23.4 7.1 43 20-66 275-319 (360)
220 2if1_A EIF1, SUI1; translation 32.2 89 0.0031 22.6 5.3 57 10-68 59-119 (126)
221 3ly1_A Putative histidinol-pho 30.4 1.8E+02 0.0061 22.2 7.2 61 20-86 274-342 (354)
222 1fg7_A Histidinol phosphate am 29.4 2E+02 0.0069 22.4 8.5 45 20-66 277-321 (356)
223 3kgw_A Alanine-glyoxylate amin 26.9 1.3E+02 0.0045 23.1 5.9 8 42-49 357-364 (393)
224 1x60_A Sporulation-specific N- 26.8 1.2E+02 0.004 18.9 4.7 51 8-61 11-65 (79)
225 3euc_A Histidinol-phosphate am 25.9 1.6E+02 0.0056 22.6 6.3 63 20-87 287-359 (367)
226 2id1_A Hypothetical protein; a 25.7 90 0.0031 22.7 4.3 47 3-49 32-82 (130)
227 1fg7_A Histidinol phosphate am 25.5 2.4E+02 0.0081 21.9 7.3 43 18-60 306-349 (356)
228 2o5a_A BH1328 protein; BHR21, 23.6 91 0.0031 22.5 4.0 47 3-49 32-82 (125)
229 3ffr_A Phosphoserine aminotran 23.3 2.2E+02 0.0074 21.6 6.4 16 51-66 310-325 (362)
230 3luy_A Probable chorismate mut 22.6 2E+02 0.007 23.8 6.5 70 7-79 207-290 (329)
231 1t1e_A Kumamolisin; proenzyme, 21.8 62 0.0021 28.5 3.3 46 12-60 81-126 (552)
232 2xzm_F EIF1; ribosome, transla 21.1 2.1E+02 0.0071 19.7 7.5 56 7-65 30-91 (101)
233 2ogh_A Eukaryotic translation 21.0 2.1E+02 0.0073 19.8 7.2 57 7-65 37-98 (108)
234 2gcx_A FEOA, ferrous iron tran 21.0 1.1E+02 0.0038 19.0 3.7 32 1-32 1-32 (75)
235 1uta_A FTSN, MSGA, cell divisi 20.1 73 0.0025 20.3 2.6 40 18-60 22-64 (81)
236 3ly1_A Putative histidinol-pho 20.0 2.9E+02 0.01 21.0 7.8 48 11-60 296-343 (354)
No 1
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=100.00 E-value=1.1e-34 Score=216.80 Aligned_cols=85 Identities=36% Similarity=0.618 Sum_probs=74.8
Q ss_pred ccCCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC-ChHH
Q 031896 3 LISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL-DPMQ 81 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~-d~~~ 81 (151)
..+++||||||||++++++||+||++||+|++++. ++++|||||+|+++++|+|||++||++|+|++||||+|| |+..
T Consensus 21 ~~~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~~v 99 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNV 99 (119)
T ss_dssp CGGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCHHH
Confidence 46789999999999999999999999999999997 789999999999999999999999999999999999998 5655
Q ss_pred HHHHhhh
Q 031896 82 RQALNER 88 (151)
Q Consensus 82 ~~~l~~~ 88 (151)
+++++++
T Consensus 100 i~~~~~~ 106 (119)
T 1wwh_A 100 MENSDRG 106 (119)
T ss_dssp HC-----
T ss_pred HHHhhcc
Confidence 5555444
No 2
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=100.00 E-value=2.3e-33 Score=212.81 Aligned_cols=92 Identities=29% Similarity=0.480 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccC-----------------C--CCCCeEEEEcCCHHHHHHHHHhCCce
Q 031896 5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPG-----------------P--RDANWMHILYQNRSDAQKALSKNGMQ 65 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~-----------------p--~~~NWi~i~y~~~~~A~rAL~~nG~i 65 (151)
.++||||||||++..++||++|++||+|+++.+. | +++|||||+|+|+.+|+|||++||++
T Consensus 6 ~e~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 6 GELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp --CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred CceEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 5799999999999999999999999999997532 2 37999999999999999999999999
Q ss_pred ecCeEEEEEEECChHHHHHH-----hhhhccCCcccC
Q 031896 66 INGVLIVGVKPLDPMQRQAL-----NERINSQGFMTL 97 (151)
Q Consensus 66 i~g~~mIGVkp~d~~~~~~l-----~~~~~~~~~~~~ 97 (151)
|+|. ||||+||++.+.++| .++.|+|+|+++
T Consensus 86 i~G~-mIGV~Py~~~~ve~l~~~~~~~~~dig~~~~~ 121 (132)
T 3p3d_A 86 FNGV-LLGVIPYTKDAVERLQKRKLTSSEDIGSGITT 121 (132)
T ss_dssp ETTE-ECEEEECCHHHHHHHC----------------
T ss_pred eCcE-EEEEEECCHHHHHHHhcCCcccccccccchhh
Confidence 9995 999999999877775 445666766554
No 3
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=2.7e-06 Score=57.93 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=61.4
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-|+|+.. .+.|.+.|++||.|.+..... ....+..|+|.+..+|++|| ..||..|.|.. |-|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM-LHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE-EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEE
Confidence 356789999999874 457788899999999876421 12479999999999999999 67999998865 88888
Q ss_pred CChH
Q 031896 77 LDPM 80 (151)
Q Consensus 77 ~d~~ 80 (151)
..+.
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8663
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.2e-06 Score=58.57 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=61.4
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
...+.|.|-|+|.. ..+.+.++|++||.|.++.... ....+..|+|.+..+|++||..||..|.|.. |-|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK-VEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB-CEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 35678999999988 4557778899999999876421 1347999999999999999999999998865 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
++
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 5
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.41 E-value=9.7e-07 Score=58.84 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
+.+-|.|-|+|++.. +.+.++|++||.|.+..... ....+..|+|.++.+|++||..||..+.|.. |-|.+..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~-l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ-IKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE-CEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE-EEEEEcc
Confidence 356789999999854 56888999999999875311 1246999999999999999999999998866 8888875
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 6
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=6.5e-07 Score=63.07 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred cccCCcEEEEecCCCCCHHHH-H---HHHhhcCcEEeeccCCCC--------CCeEEEEcCCHHHHHHHHHh-CCceecC
Q 031896 2 TLISSFLIVPFRFPPADTNLV-L---REFEKCGVILKHVPGPRD--------ANWMHILYQNRSDAQKALSK-NGMQING 68 (151)
Q Consensus 2 ~~~~~~wVtVFGfp~~~~~~V-l---~~F~~~G~I~~~~~~p~~--------~NWi~i~y~~~~~A~rAL~~-nG~ii~g 68 (151)
.++..+-|.|-|+|++..+.- . +.|++||+|+++...... ..+..|+|.++.+|++||.. ||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 466788899999999866554 4 799999999987642211 14999999999999999997 9999998
Q ss_pred eEEEEEEECChH
Q 031896 69 VLIVGVKPLDPM 80 (151)
Q Consensus 69 ~~mIGVkp~d~~ 80 (151)
.. |-|....+.
T Consensus 91 r~-l~V~~a~~k 101 (111)
T 2cpi_A 91 RT-LKASLGTTK 101 (111)
T ss_dssp EE-EEEESCCCC
T ss_pred EE-EEEEecccc
Confidence 65 888776653
No 7
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.40 E-value=2.4e-06 Score=56.89 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
..+-|.|-++|+..+ +.+.+.|++||.|.+.... + ++ ..+-.|+|.++.+|++||..||..|+|.. |-|+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-i~v~~ 86 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV-IDPKK 86 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE-EEEEe
Confidence 567899999999854 5677889999999987531 1 11 35899999999999999999999998865 77664
No 8
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.39 E-value=2.3e-06 Score=56.72 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=59.1
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----C-CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----R-DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~-~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
..+.|.|-|+|++. .+.+.+.|++||.|.+..... . ...+..|+|.+..+|++|+. .||..+.|.. |-|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE-ITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE-EEEEE
Confidence 45779999999884 456778899999998875311 1 35799999999999999999 5999998865 77777
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 643
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.36 E-value=3.9e-06 Score=55.37 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=56.9
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp 76 (151)
.+.+.|.|-|+|++. .+.+.+.|++||.|.+.... .+ ...+..|+|.++.+|++|+ ..||..+.|.. |-|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEE
Confidence 356889999999984 45677789999999987531 11 3578999999999999999 56999998855 66554
No 10
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=4.7e-06 Score=57.94 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=59.9
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~ 79 (151)
...+.|.|-++|+..+ +.|.++|++||.|.++....+ ...+..|+|.+..+|++|| ..||..|.|.. |-|...++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR-LRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE-CEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEccc
Confidence 3567899999998854 567888999999988764222 2359999999999999999 67999998855 88877655
No 11
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.34 E-value=4.1e-06 Score=57.81 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|+. ..+.|.+.|++||.|.++... .++..|+|.++.+|++||. .||..|.|.. |-|.+..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEE-EEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCE-EEEEEcCC
Confidence 4567889999987 455777889999999998752 4599999999999999999 5999999865 88888765
No 12
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=4.8e-06 Score=58.15 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecC-----eEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQING-----VLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g-----~~mIGVkp~ 77 (151)
..+-|.|-++|...+ +.+.++|++||+|++..... + .+-.|+|.+..+|++||. .||..|.| .. |-|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~-~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~-i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-D-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY-IRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET-T-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE-EEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec-C-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE-EEEEeC
Confidence 356789999998854 57778899999999887532 3 899999999999999999 69999988 54 778777
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
++
T Consensus 91 ~~ 92 (108)
T 1x4c_A 91 GP 92 (108)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=3.4e-06 Score=56.77 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+.. .+.|.+.|++||.|.+...... ...+..|+|.++.+|++||. .||..|.|.. |-|...
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a 92 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-IRVSGP 92 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEec
Confidence 45678999999874 5678888999999988754211 13589999999999999999 5999998865 777654
Q ss_pred C
Q 031896 78 D 78 (151)
Q Consensus 78 d 78 (151)
+
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 3
No 14
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=4.1e-06 Score=56.34 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|++ ..+.+.+.|++||.|.+.... .++..|+|.+..+|++|+. .||..+.|.. |-|....+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKR-INVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEECCC
Confidence 4567889999988 455778889999999998862 3499999999999999998 5999998865 88888765
No 15
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=6.2e-06 Score=58.21 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcE---EeeccCCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVI---LKHVPGPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I---~~~~~~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-++|.+.+ +.|.++|++||.| +.....++ ...+-.|+|.+..+|++||..||..|.|.. |-|.+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE-AFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE-EEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE-EEEEECC
Confidence 456789999999855 4677789999999 33322122 357999999999999999999999999866 9999988
Q ss_pred hHHHHHH
Q 031896 79 PMQRQAL 85 (151)
Q Consensus 79 ~~~~~~l 85 (151)
+......
T Consensus 93 ~~~~~~~ 99 (114)
T 2cpy_A 93 LEDMREI 99 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654443
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.32 E-value=3.5e-06 Score=55.83 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=57.4
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
.+.+.|.|-|+|++. .+.+.+.|++||.|.+..... + ...+..|+|.+..+|++||. .||..+.|.. |-|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ-IRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEe
Confidence 356788999999874 557778899999999875311 1 13589999999999999999 5999998855 77776
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
.++
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 654
No 17
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.32 E-value=1.7e-06 Score=56.15 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=52.5
Q ss_pred EEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896 9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK 75 (151)
Q Consensus 9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk 75 (151)
|.|-|+|++. .+.+.+.|++||.|.+..... ....+-.|+|.++.+|++||..||..++|.. |-|+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~v~ 73 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM-VECK 73 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC-CEEE
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE-EEEE
Confidence 5678899884 457888999999999876421 1235999999999999999999999998865 5554
No 18
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.32 E-value=4.8e-06 Score=57.95 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
.++-|.|-+.|++.+ +.+.+.|++||+|.+..... ++ ..+-.|+|.++.+|++|+. .||..|.|.. |-|...
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~-l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT-IKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence 456789999999855 46777899999999875311 12 2488999999999999997 5999999865 777765
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 44
No 19
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=6.3e-06 Score=55.62 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=60.3
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
...+-|.|-++|+. ..+.+.+.|++||.|.+.... .++..|+|.++.+|++|+. .||..|.|.. |-|....+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR-MHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE-EEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEEccC
Confidence 35678899999987 555778889999999988762 3499999999999999996 5999998855 88888765
No 20
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=3.8e-06 Score=58.84 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=60.6
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+-|.|-|+|.. ....|.++|++||.|+++.... ....+..|+|.+..+|++||..||..|.|.. |-|.+..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP-IIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE-EEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE-EEEEecCC
Confidence 467889999988 4557888999999999876421 1246999999999999999988999998865 88988766
Q ss_pred H
Q 031896 80 M 80 (151)
Q Consensus 80 ~ 80 (151)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=8.8e-06 Score=55.86 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=61.3
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
...+.|.|-++|+. ..+.|.+.|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE-VKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe-EEEEECC
Confidence 35678999999998 4557888899999999875321 234699999999999999998 7999999865 8888876
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.7e-06 Score=56.72 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|+. ..+.|.+.|++||.|+++..... ...+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP-MRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEEc
Confidence 4678899999987 45578888999999998764221 23599999999999999999 6999998866 888877
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 23
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=4e-06 Score=57.15 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec--CeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN--GVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~--g~~mIGVkp~d~ 79 (151)
..+.|.|-++|+. ..+.|.+.|++||.|.+... ..+..+..|+|.+..+|++|+. .||..|. |.. |-|....+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~-l~V~~a~~ 92 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR-LRVDFAKS 92 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB-CEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE-EEEEECCC
Confidence 3467889999987 45578888999999998875 3456799999999999999999 5999998 644 77777654
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=6.3e-06 Score=56.38 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=60.8
Q ss_pred cCCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896 4 ISSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK 75 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk 75 (151)
.+.+-|.|-+.|......-| +.|++||+|.+..... ....+-.|+|.++.+|++|+. .||..|.|.. |-|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~-l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK-ILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE-EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEE
Confidence 45677899999998666555 7999999999876421 125699999999999999999 7999999866 8888
Q ss_pred ECCh
Q 031896 76 PLDP 79 (151)
Q Consensus 76 p~d~ 79 (151)
...+
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 7654
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=5.8e-06 Score=55.85 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEee-ccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKH-VPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~-~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
..+.|.|-++|+.. .+.+.+.|++||.|.+. .... ....+..|+|.++.+|++||. .||..|.|.. |-|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP-ITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE-CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEE
Confidence 46788999999984 55778889999999877 4311 124699999999999999999 7999998865 88888
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
..+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 765
No 26
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=4.8e-06 Score=57.98 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-|+|+. ..+.+.+.|++||.|.++... ....+..|+|.+..+|++|+. .||..|.|.. |-|.+..+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV-VKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEecCC
Confidence 4678899999988 455777889999999988753 347899999999999999995 5999998855 88887655
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.30 E-value=1.5e-05 Score=56.64 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-+.|+... +.+.+.|++||.|++.... + + ...+-.|+|.+..+|++|+. .||..|.|.. |-|...
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~-i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI-IHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 456789999999854 4677789999999987531 1 1 13588999999999999997 5999999976 777775
Q ss_pred Ch-HHHHHHhhhh
Q 031896 78 DP-MQRQALNERI 89 (151)
Q Consensus 78 d~-~~~~~l~~~~ 89 (151)
.+ ..|+.+.+..
T Consensus 84 ~~~~~~~~~~~~~ 96 (110)
T 3s8s_A 84 IKGQQRMKYYELI 96 (110)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHh
Confidence 33 3444444443
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.29 E-value=6.6e-06 Score=57.14 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-|+|... ...|.+.|++||.|.++..... ...+..|+|.+..+|++||. .||..|.|.. |-|.+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a 103 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-IQVDWC 103 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEc
Confidence 45679999999984 4577888999999998764211 14799999999999999998 6999998855 888876
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=8.4e-06 Score=54.81 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=56.6
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-|+|+. ..+.|.++|++||.|.++..... ...+..|+|.++.+|++|+. .||..|.|.. |-|..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV-IKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE-EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEe
Confidence 35678999999987 45577888999999998764221 23599999999999999995 7999998865 65544
No 30
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.28 E-value=4.4e-06 Score=59.64 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
..+.|.|-++|.+.+ +.|.++|++||. |.++.. ...+ ..+-.|+|.+..+|++||.+||..|.|.. |-|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~-i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY-IEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE-EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEE
Confidence 456799999999855 467888999999 555432 1122 35899999999999999999999999976 99999
Q ss_pred CChHHHHHHhhh
Q 031896 77 LDPMQRQALNER 88 (151)
Q Consensus 77 ~d~~~~~~l~~~ 88 (151)
..+.+.+.+..+
T Consensus 95 a~~~~~~~~~~~ 106 (118)
T 2db1_A 95 SHRTEMDWVLKH 106 (118)
T ss_dssp ECHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 887765555443
No 31
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.5e-06 Score=61.77 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
|+++....+++.|++||+|+..+.. .+. +-|+|++..+|++|++.||..++|.. |-|....|
T Consensus 24 fd~~l~~~L~~~F~~~G~Vi~vr~~-~d~--~fVtF~d~~sAlaAi~mnG~~v~Gr~-LkV~lkt~ 85 (91)
T 2dnr_A 24 FDDALIDELLQQFASFGEVILIRFV-EDK--MWVTFLEGSSALNVLSLNGKELLNRT-ITIALKSP 85 (91)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEEC-SSS--EEEEESSHHHHHHGGGGTTCEETTEE-EEEEECCC
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEEe-cCC--EEEEECChHHHHHHHhcCCeEeCCeE-EEEEeCCC
Confidence 6777788999999999999988762 333 78999999999999999999998866 88887653
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=9.5e-06 Score=55.68 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++|+.. .+.|.+.|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|.+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 92 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK-IEVNNATA 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEccc
Confidence 46789999999884 456788899999999875421 125699999999999999998 5999998855 88888765
No 33
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=3.7e-06 Score=55.61 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp 76 (151)
..+-|.|-|+|+. ..+.+.+.|++||.|.+.... ...++..|+|.+..+|++|+.. ||..+.|.. |-|.+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~-l~v~~ 83 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR-LNVKW 83 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE-CCEEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE-EEEEe
Confidence 4567889999988 455788899999999987752 3468999999999999999994 999998854 55543
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.27 E-value=5e-06 Score=54.61 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=57.3
Q ss_pred cEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--C-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 7 FLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--P-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
+-|.|-|+|++. .+.+.+.|++||.|.+.... + + ...+..|.|.++.+|++|+. .||..+.|.. |-|.+..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-LRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE-EEEEecCc
Confidence 457888999985 45688889999999987531 1 1 24689999999999999999 5999998865 88887765
No 35
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.6e-06 Score=57.16 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=56.0
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
.+-|.|-++|.+.+ +.+.++|++||.|.++......+.+-.|.|.++.+|++||..||..|.|.. |-|.+..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~-l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR-LRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE-CCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE-EEEEECC
Confidence 35688899998854 567788999999998743222223999999999999999999999998855 6665443
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=6.9e-06 Score=56.59 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=58.7
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|.+.. +.|.++|++|| |+++..... ...+..|+|.+..+|++||..||..|.|.. |-|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR-IRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE-CEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE-EEEEEc
Confidence 457788999998854 56778899999 888764211 145999999999999999988999998865 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
++
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 37
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.26 E-value=2.8e-06 Score=59.41 Aligned_cols=84 Identities=25% Similarity=0.167 Sum_probs=64.8
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK 75 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk 75 (151)
...+.|.|-|+|.+.+ +.|.++|++||. |.++... +. ...+-.|.|.+..+|++||.+||..|+|.. |-|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY-VEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC-CCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE-EEEE
Confidence 3567899999999854 577888999998 6554421 11 245999999999999999999999998876 8999
Q ss_pred ECChHHHHHHhhh
Q 031896 76 PLDPMQRQALNER 88 (151)
Q Consensus 76 p~d~~~~~~l~~~ 88 (151)
+..+...+....+
T Consensus 88 ~a~~~~~~~~~~~ 100 (107)
T 2lmi_A 88 EINNEDVDALMKS 100 (107)
T ss_dssp ECCHHHHHHHHHT
T ss_pred ECCHHHHHHHHHh
Confidence 9888655544433
No 38
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.26 E-value=8.6e-06 Score=56.12 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=60.3
Q ss_pred cCCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
...+-|.|-|+|+ . ..+.+.+.|++||.|.+... ..++..|.|.+..+|++|+. .||..+.|.- |-|....+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKK-LILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEE-CEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEecCC
Confidence 4567899999997 5 66678899999999999886 25799999999999999999 7999998855 77776543
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4e-06 Score=57.62 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=60.6
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-++|.. ..+.|.++|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE-LRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC-CEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEE
Confidence 35678999999988 4557788899999999876421 124699999999999999999 6999998865 78887
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
..+
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 754
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=7.8e-06 Score=56.23 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVk 75 (151)
..+-|.|-++|+.. .+.|.+.|++||.|.++..... ...+..|+|.+..+|++||.. ||..|.|.. |-|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~-l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR-LVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB-CEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE-EEEE
Confidence 45778899999884 5577888999999998764221 257999999999999999987 899998865 8888
Q ss_pred ECCh
Q 031896 76 PLDP 79 (151)
Q Consensus 76 p~d~ 79 (151)
...+
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8765
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=5.8e-06 Score=56.49 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=59.5
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
...+.|.|-++|++.+ +.|.+.|++||.|.+.... +++ ..+..|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI-IKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE-EEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEC
Confidence 3567899999998854 5688899999999887532 112 26899999999999999954 999998865 888877
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
++
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.25 E-value=1.3e-05 Score=54.43 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=58.9
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
.+.|.|-|+|.. ..+.+.+.|++||.|.+..... ....+..|+|.+..+|++|+. .||..+.|.. |-|....
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF-LKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEcC
Confidence 467889999987 4557788899999999876421 125799999999999999995 6999998855 8888875
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=3.6e-06 Score=57.20 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C------CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R------DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGV 74 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~------~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGV 74 (151)
..+.|.|-++|.+. .+.|.+.|++||.|.++.... . ...+..|+|.+..+|++||.. ||..|.|.. |-|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK-LEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE-CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEE
Confidence 45778999999874 457778899999998875321 1 136999999999999999995 999998865 888
Q ss_pred EECCh
Q 031896 75 KPLDP 79 (151)
Q Consensus 75 kp~d~ 79 (151)
.+.++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 88765
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=7.9e-06 Score=56.15 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|+. ..+.|.++|++||.|+++..... ...+..|+|.+..+|++||.. ||..|.|.. |-|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP-IRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB-CEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEC
Confidence 4678999999988 45577888999999998764211 235999999999999999995 999998866 888887
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
.+.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 663
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=7.9e-06 Score=55.86 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|... .+.|.+.|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE-EEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEeC
Confidence 46778999999874 557778899999999876422 135699999999999999996 5999998865 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 90 ~~ 91 (102)
T 2cqb_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 46
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.23 E-value=1e-05 Score=56.82 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-|+|.+. .+.+.++|++||.|.++.... ....+-.|+|.+..+|++||..+|..|+|.. |-|....
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~-l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT-IDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE-EEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE-EEEEEcc
Confidence 45678899999885 456778899999999876421 1246999999999999999999999998865 8888765
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 103 ~ 103 (109)
T 2rs2_A 103 P 103 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.23 E-value=3.6e-06 Score=58.26 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=61.1
Q ss_pred CcEEEEecCCC------CCH-HHHHHHHhhcCcEEeeccC--C---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEE
Q 031896 6 SFLIVPFRFPP------ADT-NLVLREFEKCGVILKHVPG--P---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIV 72 (151)
Q Consensus 6 ~~wVtVFGfp~------~~~-~~Vl~~F~~~G~I~~~~~~--p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mI 72 (151)
++.|.|-|.|. +.+ +.+.+.|++||.|.+.... + ....+-.|+|.++.+|++||. .||..|.|+-.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999998 544 4677889999999987631 1 124799999999999999996 799999983448
Q ss_pred EEEECChHHH
Q 031896 73 GVKPLDPMQR 82 (151)
Q Consensus 73 GVkp~d~~~~ 82 (151)
-|....+.++
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 8998887643
No 48
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=3.6e-06 Score=57.57 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=61.0
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
...+-|.|-++|+.. .+.+.+.|++||.|.++.. ....++..|+|.++.+|++|+. .||..|.|.. |-|....+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ-LRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC-CEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce-EEEEEcCC
Confidence 356789999999874 4567788999999998875 3457899999999999999995 5999998855 88888765
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=2.3e-06 Score=58.98 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
...+.|.|-++|+. ..+.|.++|++||.|.++..... + ..+..|+|.++.+|++||..||..|.|.. |-|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN-IDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE-EBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE-EEEEEc
Confidence 45678889999988 45578888999999998753211 1 25899999999999999999999999865 777776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 93 ~~ 94 (105)
T 2dh8_A 93 TP 94 (105)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=5.9e-06 Score=58.01 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=59.2
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+.|.|-++|.... +.|.+.|++||+|+++..... ...+-.|+|.+..+|++||..||..|.|.. |-|.+..+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV-VEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE-EEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE-EEEEECCC
Confidence 46788999998754 567788999999987753211 235999999999999999999999998865 88888765
Q ss_pred H
Q 031896 80 M 80 (151)
Q Consensus 80 ~ 80 (151)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=4e-06 Score=59.02 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=60.2
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
...+-|.|-|+|++.+ +.+.++|++||.|.++.... ....+..|+|.++.+|++||..||..++|.. |-|.+-.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~-l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD-LLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT-CEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE-EEEEEch
Confidence 3457789999999854 57778899999999876411 1347999999999999999999999999876 7777754
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=6e-06 Score=56.72 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-++|+... +.|.+.|++||.|.++.... ++ ..+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI-LNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-CEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEE
Confidence 3567899999998854 56677789999999876421 11 2489999999999999999 7999998855 88888
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
..+
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 53
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=7.1e-06 Score=57.57 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-|+|.+. .+.+.+.|++||.|.+..... ....+..|+|.+..+|++|+. .||..|.|.. |-|....+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~ 106 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK-IEVNNATA 106 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence 46789999999984 556888899999998875421 125799999999999999999 5999998855 77877654
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=5.9e-06 Score=56.91 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-|+|.. ..+.|.+.|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-ISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB-CEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE-EEEEee
Confidence 4567999999998 4557788899999999875311 114689999999999999998 5999998865 777776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 55
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=6.1e-06 Score=57.33 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=60.5
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEe-ecc--CCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILK-HVP--GPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~-~~~--~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
...+.|.|-|+|.+.+ +.|.++|++||.|.+ +.. ..+ ...+-.|.|.++.+|++||.+||..|+|.. |-|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~-i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY-IEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC-CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE-EEEEEC
Confidence 3467889999999855 467788899999986 432 112 246999999999999999999999999976 888887
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 56
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.4e-05 Score=54.53 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=59.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++ ....+.+.++|++||.|.++.. .....+..|.|.+..+|++||.. ||..|.|.. |-|....+
T Consensus 14 ~~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQ-LKVNIARK 86 (97)
T ss_dssp CCSEEEEECS-SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE-EEEECCSS
T ss_pred CCCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEECCC
Confidence 4567888886 6677889999999999998875 34567999999999999999955 999998854 77877654
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.20 E-value=8.8e-06 Score=54.83 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|+. ..+.|.+.|++||.|.++... +.+ ..+..|+|.++.+|++||. .||..|.|.. |-|...
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP-INVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE-EEEEEc
Confidence 4578899999987 455778889999999987531 111 3589999999999999999 6999998865 666654
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.19 E-value=9.6e-06 Score=56.71 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=59.8
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-|+|... .+.|.++|++||.|.++.... ++ ..+..|+|.+..+|++||. .||..|.|.. |-|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ-IRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-CEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEE
Confidence 456789999999884 457788899999999875411 11 3589999999999999997 5999998855 88888
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
.++
T Consensus 92 a~~ 94 (115)
T 2dgo_A 92 ATR 94 (115)
T ss_dssp SSC
T ss_pred ccC
Confidence 765
No 59
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.9e-05 Score=53.83 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=60.1
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhc--CcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKC--GVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~--G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
...+.|.|-++|+.. .+.+.+.|++| |.|.+... + .++..|+|.+..+|++||. .||..|.|.. |-|....+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~ 88 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-I--RDYAFVHFSNREDAVEAMKALNGKVLDGSP-IEVTLAKP 88 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-C--SSEEEEEESSHHHHHHHHHHHSSEEETTEE-EEEECCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-e--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE-EEEEECCC
Confidence 345789999999884 55777889999 99998875 2 4599999999999999999 8999998865 88887765
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.19 E-value=1.3e-05 Score=55.98 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
..+.|.|-|+|+..+ +.+.+.|++||.|.+.... .....+..|.|.+..+|++|+. .||..+.|.. |-|.+..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY-LVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB-CEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEecCC
Confidence 357899999999854 5677889999999987642 1235799999999999999999 7999998866 888888753
No 61
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.19 E-value=8.8e-06 Score=53.76 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=52.1
Q ss_pred cEEEEecCCCCC-------HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 7 FLIVPFRFPPAD-------TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 7 ~wVtVFGfp~~~-------~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
+.|.|-|.|... .+.+.+.|++||.|.+..... ....+..|+|.++.+|++|+. .||..+.|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 568899999876 267888999999999876421 124799999999999999999 599999886
No 62
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.1e-06 Score=63.05 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
||++....+++.|++||+|+..+.. .+. +.|+|.+..+|++||+.||..++|.. |-|..
T Consensus 33 fd~~l~~~L~~~F~~~G~Vilvr~v-~d~--~fVtF~d~~sAl~AI~ldG~~v~Gr~-L~V~~ 91 (95)
T 1ufw_A 33 FPEDLRTELMQTLGSYGTIVLVRIN-QGQ--MLVTFADSHSALSVLDVDGMKVKGRA-VKISG 91 (95)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEE-TTE--EEEECSCSHHHHHHHHGGGSEETTEE-EEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEe-cCc--EEEEEcChHHHHHHHhcCCeeeCCeE-EEEec
Confidence 7777788999999999999988752 233 88999999999999999999999866 77654
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.18 E-value=7.7e-06 Score=58.20 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred cccCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896 2 TLISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK 75 (151)
Q Consensus 2 ~~~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk 75 (151)
+-...+.|.|-|+|.+. .+.|.+.|++||.|.++.... + ...+..|+|.+..+|++|+. .||..|.|.. |-|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA-IKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB-CEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEE
Confidence 44567889999999874 457778899999998875421 1 23799999999999999997 5999998866 7788
Q ss_pred ECCh
Q 031896 76 PLDP 79 (151)
Q Consensus 76 p~d~ 79 (151)
...+
T Consensus 82 ~a~~ 85 (116)
T 2fy1_A 82 QAKK 85 (116)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7765
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1e-05 Score=54.38 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|++. .+.+.+.|++||.|.+.... .++..|+|.++.+|++|+. .||..+.|.. |-|.+..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN-INVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCB-CEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcE-EEEEECCC
Confidence 45678899999884 45688889999999988762 5799999999999999995 7999998865 78877755
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.18 E-value=9.5e-06 Score=57.61 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=59.9
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-|+|+.. .+.|.+.|++||.|.++.... + ...+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-ISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEEEE
Confidence 346789999999985 456788899999999876421 1 15699999999999999996 6999998865 88887
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
+.+
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 754
No 66
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.17 E-value=5e-06 Score=58.89 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=58.7
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+.|.|-|+|.. ..+.|.+.|++||.|.++.... + ...+..|+|.+..+|++||..||..|.|.. |-|.+.++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT-IKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE-CEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEECCC
Confidence 467889999988 4567888899999998765311 1 245999999999999999988999998865 88888654
No 67
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.2e-06 Score=56.84 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|.+. .+.+.+.|++||.|.+.... ....+..|.|.+..+|++|+.. ||..+.|.. |-|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN-LRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE-CCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEec
Confidence 35789999999884 55777889999999988753 4578999999999999999965 999998854 555443
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.7e-05 Score=54.42 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
...+-|.|-++|.. ..+.|.+.|++||.|.++..... + ..+-.|+|.+..+|++||. +|..|+|.. |-|...
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~-l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW-CDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE-EEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE-EEEEec
Confidence 34567899999987 45578889999999998753111 1 2489999999999999999 688998865 888887
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 663
No 69
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.7e-06 Score=56.44 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=58.4
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeec--cCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHV--PGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~--~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
.+-|.|-++|+.. .+.+.+.|++||.|.+.+ ........-.|+|.+..+|++|+. .||..|.|.. |-|....+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT-LKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB-CEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCcc
Confidence 5678999999885 457788899999999873 211223338999999999999997 7999998866 888887664
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=6.9e-06 Score=56.15 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|+.. .+.|.+.|++||.|.++..... ...+..|+|.++.+|++|| ..||..|.|.. |-|.+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ-IRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC-CEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 56789999999884 5578888999999988764221 2359999999999999999 56999998855 777776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 44
No 71
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=7.1e-06 Score=58.60 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeec---cCCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHV---PGPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~---~~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-|+|.+.+ +.|.++|++||.|.+.. ...++ ..+-.|.|.+..+|++||..||..|.|.. |-|.+..
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~-i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF-IQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC-BEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE-EEEEECC
Confidence 457899999999854 56778899999986521 11222 35999999999999999999999999976 8999987
Q ss_pred hHH
Q 031896 79 PMQ 81 (151)
Q Consensus 79 ~~~ 81 (151)
+..
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 72
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.15 E-value=7e-06 Score=57.14 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=60.0
Q ss_pred CcEEEEecCCCCC-------HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEE
Q 031896 6 SFLIVPFRFPPAD-------TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGV 74 (151)
Q Consensus 6 ~~wVtVFGfp~~~-------~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGV 74 (151)
.+.|.|-|.|... ...+.+.|++||.|.++.... ....+..|+|.+..+|++|+.. ||..|.|.-.|-|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 5689999999876 267888999999999876421 1247999999999999999995 9999999723777
Q ss_pred EECChH
Q 031896 75 KPLDPM 80 (151)
Q Consensus 75 kp~d~~ 80 (151)
...++.
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 776653
No 73
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.15 E-value=1.4e-05 Score=59.37 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=59.6
Q ss_pred CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-|.|++.+. .|.+.|++||.|.+..... ++ ..+..|+|.+..+|.+||..||..|+|.. |-|.+..
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~-i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN-CEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE-CEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE-EEEEecC
Confidence 3467899999988554 6788899999999875321 11 35899999999999999999999999965 9999987
Q ss_pred hH
Q 031896 79 PM 80 (151)
Q Consensus 79 ~~ 80 (151)
+.
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 75
No 74
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.15 E-value=1.2e-05 Score=54.34 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=59.7
Q ss_pred ccCCcEEEEecCCCCCHH-HHH----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEE
Q 031896 3 LISSFLIVPFRFPPADTN-LVL----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGV 74 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~~~~-~Vl----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGV 74 (151)
....+.|.|-|+|++... .+. +.|++||.|.+..... ....+..|+|.+..+|++|+. .||..+.|.. |-|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP-MRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE-CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE-EEE
Confidence 446788999999998665 444 7999999999876411 124689999999999999998 4999998855 888
Q ss_pred EECCh
Q 031896 75 KPLDP 79 (151)
Q Consensus 75 kp~d~ 79 (151)
....+
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 87754
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.14 E-value=1.5e-05 Score=56.64 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-|+|+. ..+.+.+.|++||+|.+..... + ...+..|+|.+..+|++||. .||..|.|.. |-|...+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~ 112 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP-MDIQLVA 112 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE-EEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEeC
Confidence 4568999999987 5567888899999998765321 1 34699999999999999999 7999998865 8888765
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 113 ~ 113 (124)
T 2kt5_A 113 S 113 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.13 E-value=7.2e-06 Score=57.17 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=59.3
Q ss_pred CcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+.|.|-++|+. ..+.+.+.|++||.|.++.. ...+..|+|.+..+|++|| ..||..|.|.. |-|....+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQT-LDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEE-CCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEECCC
Confidence 367899999997 56688889999999998876 4579999999999999999 56999998855 78877653
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=6.7e-06 Score=56.30 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=59.4
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
.+-|.|-|+|.. ..+.|.+.|++||.|.+..... ++ ..+..|+|.+..+|++||. .||..+.|.. |-|....
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA-LRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC-BEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEeCC
Confidence 456889999987 4567888999999998765311 11 4689999999999999996 7999998866 8898876
Q ss_pred hH
Q 031896 79 PM 80 (151)
Q Consensus 79 ~~ 80 (151)
+.
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.12 E-value=1.3e-05 Score=55.11 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=59.9
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCcee---cCeEEEE
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQI---NGVLIVG 73 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii---~g~~mIG 73 (151)
...+-|.|-++|.... +.|.+.|++||.|.++..... ...+..|+|.+..+|++||. .||..+ .|.. |-
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP-IQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC-CE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce-EE
Confidence 3567789999998854 577788999999998764221 24699999999999999997 799876 6655 88
Q ss_pred EEECChH
Q 031896 74 VKPLDPM 80 (151)
Q Consensus 74 Vkp~d~~ 80 (151)
|.+.++.
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8888763
No 79
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.12 E-value=1.6e-05 Score=56.30 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=57.3
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
.+-|.|=++|++. -+.+.+.|++||.|+++.... ....+-.|+|.++.+|++||. .||..|.|.. |-|.+..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~-i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK-VFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence 4458888999984 457888899999999765311 113589999999999999996 5999999865 78887654
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.12 E-value=1.5e-05 Score=54.84 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-++|.+.. +.|.++|++|| |+++..... + ..+..|+|.+..+|++||..||..|.|.. |-|...+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS-LRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE-CEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE-EEEEEec
Confidence 457788999998854 56777889997 887653111 1 24899999999999999999999998865 8888876
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 92 ~ 92 (103)
T 2dng_A 92 G 92 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 81
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.11 E-value=1e-05 Score=60.04 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
..+.|.|-|.|.+.+ +.|.++|++||. |.++.. .+.+ ..+-.|+|.++.+|++||..||..|+|.. |-|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~-i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY-IEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE-EEEEE
Confidence 457799999999855 567788999999 444321 1122 35999999999999999999999999976 99999
Q ss_pred CChHHHHHHh
Q 031896 77 LDPMQRQALN 86 (151)
Q Consensus 77 ~d~~~~~~l~ 86 (151)
..+.+.+.+.
T Consensus 122 a~~~e~~~~~ 131 (136)
T 2hgl_A 122 SHRTEMDWVL 131 (136)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 9877655544
No 82
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.11 E-value=5.9e-06 Score=56.53 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=58.8
Q ss_pred EEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 8 LIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
-|.|-+.|++ ..+.+.+.|++||.|.+.........+..|+|.+..+|++|+. .||..+.|.. |-|.+..+.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR-VRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC-CEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE-EEEEEccCC
Confidence 4778899987 4557888899999998876522246799999999999999999 5999998866 888887663
No 83
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.11 E-value=9e-06 Score=57.65 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
..+-|.|-++|.+. .+.+.++|++||+|++..... + .+-.|+|.+..+|++||. .||..|.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-D-GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-T-SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec-C-CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34678899999874 457788899999999887532 3 899999999999999999 699999884
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.10 E-value=3.5e-05 Score=57.99 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcC--cEEeeccC---CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCG--VILKHVPG---PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP 76 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp 76 (151)
.+-|.|-++|.+.+ +.+.+.|++|| +|+++... .++ ..+-.|.|.+..+|++||.. ||..|.|.. |-|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~-l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK-VDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE-CEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-eEEEE
Confidence 46899999999855 56778899999 89887531 122 24899999999999999999 999999865 99999
Q ss_pred CChHHHHHHh
Q 031896 77 LDPMQRQALN 86 (151)
Q Consensus 77 ~d~~~~~~l~ 86 (151)
+++......+
T Consensus 134 a~~~~~~~~e 143 (156)
T 3n9u_C 134 ATRQNLSQFE 143 (156)
T ss_dssp CCHHHHHHHH
T ss_pred cCCCcchhhh
Confidence 9886554443
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2e-05 Score=54.81 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-++|.. ..+.|.++|++||.|+++... +++ ..+..|+|.+..+|++||. .||..|.|.. |-|...+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP-MHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE-EEEEEcc
Confidence 3567899999987 456788889999999876531 122 3589999999999999999 6999998855 8888765
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 86
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.10 E-value=5.6e-06 Score=53.48 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=51.7
Q ss_pred EEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896 9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK 75 (151)
Q Consensus 9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk 75 (151)
|.|-|.|++. .+.+.+.|++||.|.+..... ....+-.|+|.++.+|++||..||..+.|.- |-|+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~v~ 73 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK-CEIK 73 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC-CCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE-EEEE
Confidence 5677888874 557888899999998875421 1246999999999999999999999998865 4443
No 87
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.6e-05 Score=58.14 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=62.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEE----eec--cCCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVIL----KHV--PGPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~----~~~--~~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk 75 (151)
+.+.|.|-|.|.+.+ +.|.++|++||.|. ++. ...++ ..+-.|+|.++.+|++||.+||..|.|.. |=|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~-i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY-IELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE-ECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE-EEEE
Confidence 456789999998854 57888899999762 221 11222 36899999999999999999999999876 8999
Q ss_pred ECChHHHHHHhh
Q 031896 76 PLDPMQRQALNE 87 (151)
Q Consensus 76 p~d~~~~~~l~~ 87 (151)
+..+.+.+.+..
T Consensus 101 ~a~~~e~~~~~~ 112 (123)
T 2dha_A 101 RSTAAEVQQVLN 112 (123)
T ss_dssp EECHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 988765554443
No 88
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=1.6e-05 Score=56.06 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
+.+-|.|-++|+..+ ..+.+.|++||.|.++.. +....+..|.|.+..+|++|+. .||..|.|.. |-|...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP-LYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB-CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 346788999998855 467778999999998875 3466799999999999999997 5999998866 556554
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.09 E-value=1.4e-05 Score=55.97 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|.+. .+.|.+.|++||.|+++..... + ..+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a 102 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR-LKVQLK 102 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEc
Confidence 45779999999984 4577788999999987653111 1 2489999999999999995 5999998865 778776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 90
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.09 E-value=1.5e-05 Score=56.16 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
...+-|.|-|+|... .+.|.+.|++||.|.+.... ..+..|.|.+..+|++|+. .||..+.|.. |-|....+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQP-LEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEecC
Confidence 356788999999884 45788889999999988762 6799999999999999998 5999998865 77877654
No 91
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.09 E-value=8.7e-06 Score=59.09 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=59.1
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+-|.|-|.|++. .+.+.+.|++||.|.+...... ...+..|+|.+..+|++||..||..++|.. |-|.+.+|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK-IEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC-EEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE-EEEeecCC
Confidence 4568899999874 4577888999999988764221 124899999999999999999999998866 88888766
Q ss_pred H
Q 031896 80 M 80 (151)
Q Consensus 80 ~ 80 (151)
.
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 92
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=8.3e-06 Score=55.97 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=60.1
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
...+.|.|-++|+.. .+.|.+.|++||+|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP-LYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEec
Confidence 356789999999885 456777899999999876421 124689999999999999999 5999998865 8888876
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 92 ~ 92 (103)
T 2d9p_A 92 R 92 (103)
T ss_dssp S
T ss_pred c
Confidence 5
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.08 E-value=1.9e-05 Score=54.39 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|+..+ +.|.+.|++||.|.+.... +++ ..+..|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a 105 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP-MNIQLV 105 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEe
Confidence 467899999999854 5678889999999876531 222 35899999999999999995 999998855 666543
No 94
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=2.3e-05 Score=52.57 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=58.5
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-|+|... .+.|.+.|++| .|++.... .++ ..+-.|.|.+..+|++||..||..|.|.. |-|.+..+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~-i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY-IEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE-EEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE-EEEEECCc
Confidence 46778999999884 45778889999 88876431 122 34999999999999999999999999976 88888765
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.08 E-value=5.9e-06 Score=56.93 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=56.7
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
...+-|.|-|+|.+.. +.|.+.|++|| |.+...... ...+..|.|.+..+|++||..||..|+|.. |-|..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~-l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR-IRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC-CCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE-EEEEe
Confidence 3457788999998744 46788899999 988764211 246999999999999999999999998865 77776
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
.++
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 96
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.07 E-value=4.1e-05 Score=54.72 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk 75 (151)
..+-|.|-|+|+. ..+.|.+.|++||.|.+..... ....+..|+|.++.+|++||. .||..|.|.. |-|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE-EEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEE
Confidence 4678899999988 4567888899999999876421 235799999999999999995 6999998865 5554
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.07 E-value=2.3e-05 Score=57.76 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|.. ..+.|.++|++||.|+++.... ++ ..+..|+|.+..+|++||. .||..|.|.. |-|.+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI-IRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE-CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 5678999999988 5568888999999999876411 11 2599999999999999999 4999998855 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 98
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=5.3e-05 Score=54.03 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=60.2
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~ 80 (151)
.+.|.|-|.|.+.+ +.|.++|++| .|.++... +. ...+-.|+|.++.+|++||.+||..|+|.. |-|.++.+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY-VEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE-EEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEECCcc
Confidence 45789999999855 5788889999 78766431 11 246999999999999999999999999986 899999875
Q ss_pred H
Q 031896 81 Q 81 (151)
Q Consensus 81 ~ 81 (151)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 99
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.07 E-value=3.1e-05 Score=51.12 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVL 70 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~ 70 (151)
..+-|.|-+.|+.. .+.+.++|++| | .|.+... .....+-.|.|.++.+|++||..||..+.|..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 34678899999885 45788889999 8 8988775 34578999999999999999999999999865
No 100
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.1e-05 Score=55.62 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+. ..+.+.+.|++||.|.+..... ++ ..+..|+|.+..+|++||. .||..++|.. |-|...
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-LRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE-EEEEec
Confidence 4567899999988 5567888999999999875421 12 3479999999999999998 6999998865 767654
Q ss_pred C
Q 031896 78 D 78 (151)
Q Consensus 78 d 78 (151)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.05 E-value=1.9e-05 Score=57.82 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|++.+ +.+.+.|++||+|.+.........+-.|+|.+..+|++||. .||..|.|.- |-|....+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 147 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR-VRVELSNG 147 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC-CEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEcCC
Confidence 457788999999854 46788899999999887533336799999999999999998 6999998865 77777654
No 102
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.5e-05 Score=54.26 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=56.5
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~ 79 (151)
.+.|.|-++|+.. .+.+.+.|++||.|...........+-.|.|.+..+|++|+.. ||..|.|.. |-|....+
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~ 93 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT-LRVALARQ 93 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC-CEEEECCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCC
Confidence 5688999999874 4567788999999842211113467999999999999999965 999998865 77877654
No 103
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.04 E-value=2.8e-05 Score=53.01 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=55.8
Q ss_pred cEEEEecCCCCCH-HHHHHHHhhcC-cEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEEC
Q 031896 7 FLIVPFRFPPADT-NLVLREFEKCG-VILKHVPG-----PRDANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKPL 77 (151)
Q Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G-~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp~ 77 (151)
+-|.|-|.|++.+ +.|.+.|++|| +|.++... .....+-.|+|.++.+|++||.. ||..+.|.- |-|...
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~-i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK-VSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE-EEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE-EEEEEc
Confidence 4688999999855 46778899999 78776431 12347899999999999999975 567788865 888776
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
++.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 104
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=4e-05 Score=52.90 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=59.5
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hC------CceecCeEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KN------GMQINGVLI 71 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~n------G~ii~g~~m 71 (151)
..+.|.|-++|+. ..+.|.++|++||.|.++.... ....+..|+|.+..+|++||. .| |..|.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~- 92 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ- 92 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE-
Confidence 4677899999988 4557788899999999876421 135799999999999999998 47 99998865
Q ss_pred EEEEECCh
Q 031896 72 VGVKPLDP 79 (151)
Q Consensus 72 IGVkp~d~ 79 (151)
|-|.+..+
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 88888765
No 105
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.04 E-value=1.4e-05 Score=53.88 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=55.0
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
.+.|.|-++|.+.+ +.|.+.|++||.|.+.... .+ ...+..|+|.++.+|++||. .||..|.|.. |-|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~-l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-VKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE-EEEEec
Confidence 46789999998854 5688889999998754321 11 23689999999999999998 5999998865 666554
No 106
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=3.2e-05 Score=53.83 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=58.6
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEE--------eeccC---C--CCCCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVIL--------KHVPG---P--RDANWMHILYQNRSDAQKALS-KNGMQING 68 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~--------~~~~~---p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g 68 (151)
...+.|.|-++|... .+.|.+.|++||.|. ++... . ....+..|+|.+..+|++||. .||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 456789999999874 457888899999998 23321 1 124699999999999999998 59999988
Q ss_pred eEEEEEEECCh
Q 031896 69 VLIVGVKPLDP 79 (151)
Q Consensus 69 ~~mIGVkp~d~ 79 (151)
.. |-|....+
T Consensus 93 ~~-l~V~~a~~ 102 (113)
T 2cpe_A 93 SK-LKVSLARK 102 (113)
T ss_dssp EE-CEEECSSC
T ss_pred CE-EEEEECCC
Confidence 55 78877655
No 107
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.03 E-value=1.4e-05 Score=53.44 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++|... .+.+.+.|++||.|.+..... + ...+..|+|.+..+|++|+. .||..+.|.. |-|....+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE-IDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC-CCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCC
Confidence 46789999999884 457788899999999875421 1 23689999999999999999 5999998865 66666543
No 108
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.02 E-value=1.8e-05 Score=55.53 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC--C---CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP--R---DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+. ..+.|.+.|++||.|.+..... . ...+..|.|.+..+|++|+. .||..|.|.. |-|...
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~-l~V~~a 103 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP-MKVGHV 103 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEc
Confidence 4577899999987 4557788899999998875311 1 13589999999999999997 6999998866 777765
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.01 E-value=2e-05 Score=54.09 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCe--EEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGV--LIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~--~mIGVkp 76 (151)
..+.|.|-++|... .+.|.+.|++||.|.++... +++ ..+..|+|.+..+|++||. .||..+.|. -.|-|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 45778999999884 55778889999999987532 122 3689999999999999997 699998773 3377777
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
.++
T Consensus 94 a~~ 96 (105)
T 2dnh_A 94 ADT 96 (105)
T ss_dssp SCS
T ss_pred Ccc
Confidence 765
No 110
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.00 E-value=4.6e-05 Score=55.88 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|.|++. .+.+.+.|++||+|.+..... ....+-.|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-LRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE-EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 35788999999985 456788899999999876421 1235899999999999999975 999998866 888877
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
++
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 111
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.00 E-value=4.7e-05 Score=55.07 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
+.+.|.|-|+|++ ..+.+.+.|++||.|.+..... + ...+..|+|.++.+|++|+. .||..+.|.. |-|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR-LKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE-EEEEec
Confidence 4678999999998 4557888899999999876421 1 13699999999999999997 7999998865 778776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 81 ~~ 82 (168)
T 1b7f_A 81 RP 82 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 112
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.7e-05 Score=53.37 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCC-ceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNG-MQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG-~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|++ ..+.+.++|++||.|++...- ....+..|+|.+..+|++||. .|| ..+.|.. |-|.+..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI-MEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE-CEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE-EEEEEccC
Confidence 4567889999998 455678889999995543321 235689999999999999997 699 8998855 88888765
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.99 E-value=2.7e-05 Score=54.57 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk 75 (151)
..+.|.|-|+|++ ..+.+.+.|++||+|+++.... ....+..|+|.+..+|++||. .||..|.|.. |-|.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR-LKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE-CCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEE
Confidence 4578899999998 4557778899999999876421 124699999999999999998 5999998865 4444
No 114
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=6.9e-05 Score=52.44 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=58.2
Q ss_pred cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~ 77 (151)
...+-|.|-++|++. .+.|.++|++||.|.++..... ...+..|+|.+..+|++||......|.|.. |-|...
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK-ANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE-CEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE-EEEEEc
Confidence 356789999999984 4577888999999998764221 235999999999999999998444888855 788776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 115
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=4.4e-05 Score=52.65 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=58.7
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCc-EEeeccCC------CCCCeEEEEcCCHHHHHHHHHh--CC-ceecCeEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGV-ILKHVPGP------RDANWMHILYQNRSDAQKALSK--NG-MQINGVLIVG 73 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~-I~~~~~~p------~~~NWi~i~y~~~~~A~rAL~~--nG-~ii~g~~mIG 73 (151)
..+-|.|-|+|.. ..+.+.++|++||. |.+..... ....+-.|+|.++.+|++|+.. || ..+.|.. |-
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~-l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ-IA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC-CE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe-EE
Confidence 4567899999987 45678889999998 98875421 2356999999999999999996 55 8898865 78
Q ss_pred EEECCh
Q 031896 74 VKPLDP 79 (151)
Q Consensus 74 Vkp~d~ 79 (151)
|...++
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 888765
No 116
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.99 E-value=3.8e-05 Score=57.06 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-|+|++ ..+.|.+.|++||.|+++... + ++ ..+-.|.|.+..+|++||..||..+.|.. |-|.+..
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV-VEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE-CEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE-eeeeccc
Confidence 4578999999998 455788889999999886531 1 12 34899999999999999999999998866 7787765
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 91 ~ 91 (196)
T 1l3k_A 91 S 91 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=6.5e-05 Score=51.21 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++|+... +.|.+.|++||.|.-... .+ ...+..|+|.+..+|++||. .||..|.|.. |-|...++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA-IRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE-EEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE-EEEEEcCC
Confidence 467899999999854 467788899999943322 22 35799999999999999999 7999998865 88888766
No 118
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.98 E-value=4.1e-05 Score=60.94 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=60.6
Q ss_pred CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
..+.|.|-|.|++ ..+.|.+.|++||.|.+...... ...+..|+|.+..+|++||..||..|.|.. |-|..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~-i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNRE-ISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEE-EEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcE-EEEEE
Confidence 4578999999988 55678889999999998764221 246899999999999999988999998865 88877
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
..+
T Consensus 288 a~~ 290 (292)
T 2ghp_A 288 ADK 290 (292)
T ss_dssp CCC
T ss_pred ecC
Confidence 654
No 119
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.97 E-value=3.9e-05 Score=55.22 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC--C---CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP--R---DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p--~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-|+|.+.. +.|.+.|++||+|.++.... . ...+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a 119 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR-LKVALA 119 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE-EEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence 456789999999854 47888999999999875311 1 13589999999999999999 5999998865 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 120
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.97 E-value=2.1e-05 Score=59.15 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
+.+-|.|-|+|+ . ..+.+.+.|++||.|.++........+..|.|.+..+|++||. .||..+.|.. |-|.+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP-IRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC-CEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE-EEEEEecC
Confidence 567899999998 5 6678889999999999886533445789999999999999997 8999998865 88887654
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.97 E-value=1.3e-05 Score=58.28 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=58.0
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+. ....|.+.|++||.|+++.... ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~-l~V~~a 123 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-IRVDFS 123 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence 4566888999998 4557778899999999876421 234699999999999999999 5999998865 666655
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=8.1e-06 Score=57.04 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++|.+.+ +.|.++|++|| |+++.. .+++ ..+-.|.|.++.+|++||.+||..|.|.. |-|.+..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY-VELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC-CEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE-EEEEECCC
Confidence 457789999999855 56777889999 445432 1222 24899999999999999999999999876 77877654
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.6e-05 Score=54.27 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=57.8
Q ss_pred cCCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 4 ISSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 4 ~~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
...+-|.|-++|+ . ..+.+.++|++||.|.+... + ..+..|+|.+..+|++|+. .||..+.|.. |-|.+..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-K--NAFGFIQFDNPQSVRDAIECESQEMNFGKK-LILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-E--TTEEEEEESCHHHHHHHHHHHTCSSCBTTT-BCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-e--CCEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEEcC
Confidence 4567889999997 5 66678889999999998875 2 5799999999999999999 5999998765 5565543
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.95 E-value=5.2e-05 Score=54.48 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
+.+-|.|-|+|++ ..+.+.+.|++||.|.+..... ++ ..+..|+|.++.+|++||. .||..+.|.. |-|.+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT-IKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce-EEEEec
Confidence 3567889999998 5567888899999999875311 12 2689999999999999998 6999998855 777776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 80 ~~ 81 (167)
T 1fxl_A 80 RP 81 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 125
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.94 E-value=6.7e-05 Score=55.00 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-|.|++. .+.+.++|++||+|..........++..|+|.+..+|++||. .||..|+|.. |-|....+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE-EEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEecCC
Confidence 35678999999874 457888899999998772111345799999999999999999 5999999866 88877654
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.94 E-value=2.4e-05 Score=52.85 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-+.|... .+.+.+.|++||.|...........+..|+|.+..+|++||. .||..|.|.. |-|.+..+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE-EEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEcCC
Confidence 35678999999884 457788899999998762111124699999999999999999 6999998865 88888755
No 127
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.94 E-value=2.8e-05 Score=58.11 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+.. ...|.++|++||.|.++.... + ...+..|.|.+..+|++||. .||..|.|.. |-|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-IQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence 45679999999884 456778899999999875421 1 14799999999999999997 5999998865 888887
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 128
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.94 E-value=4.6e-05 Score=51.91 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEe--------eccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILK--------HVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~--------~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
..+.|.|-|.|.+. .+.+.+.|++||.|.+ .... + ++ ..+-.|.|.+..+|++|++ .||..+.|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 46778999999984 4577888999999987 4321 1 11 3599999999999999997 699999886
Q ss_pred EEEEEEE
Q 031896 70 LIVGVKP 76 (151)
Q Consensus 70 ~mIGVkp 76 (151)
. |-|..
T Consensus 92 ~-l~V~~ 97 (99)
T 2la6_A 92 P-IKVSF 97 (99)
T ss_dssp B-CEEEE
T ss_pred E-EEEEe
Confidence 5 55554
No 129
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.92 E-value=3.2e-05 Score=58.30 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-++|.+. .+.|.++|++||.|.+...... + ..+..|+|.+..+|++||. .||..|+|.. |-|.+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY-LRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB-CEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE-EEEEEe
Confidence 34678999999874 5578888999999998754211 1 3589999999999999999 5999998866 777765
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=3.4e-05 Score=52.28 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=55.4
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeecc---CCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVP---GPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~---~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|... .+.|.+.|++||.|.+... ..+ ...+..|+|.++.+|++|| ..||..|.|.. |-|...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-VKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE-CEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEEEEc
Confidence 45678999999885 4567888999999864321 111 2478999999999999999 56999998865 777664
No 131
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.3e-05 Score=52.99 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=52.0
Q ss_pred CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896 5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVL 70 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~ 70 (151)
..+.|.|-++|+.... .+.+.|++||.|.+..... ....+..|.|.++.+|++|+. .||..+.|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4578899999998554 6667789999999875311 124689999999999999999 6998887654
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.90 E-value=8.2e-05 Score=57.28 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=59.3
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
.+.|.|-+.|+. ....+.+.|++||+|++..... ....+..|+|.+..+|++||. .||..|+|.. |-|.+..+.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~-i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK-VFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEcCCC
Confidence 456889999998 4557778899999999865311 124688999999999999997 5999999865 889988664
No 133
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=4.5e-05 Score=51.73 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVL 70 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~ 70 (151)
..+-|.|-++|+. ..+.+.+.|++||.|+ +..... + ...+-.|+|.++.+|++|+. .||..+.|..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 4567889999998 4557788899999998 664311 1 12689999999999999999 5999998754
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.89 E-value=7.3e-05 Score=53.65 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896 8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~ 79 (151)
-|.|-|+|++. .+.+.+.|++||.|.+.... +. ...+..|+|.+..+|++|| ..||..+.|.. |-|.+..+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-i~v~~~~~ 78 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI-VKINWAFQ 78 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe-eEEEEcCC
Confidence 47888999884 45688889999999887531 11 2358999999999999999 78999998865 77877654
No 135
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.88 E-value=3.7e-05 Score=57.22 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|.. ..+.|.+.|++||.|.+..... ++ ..+..|+|.++.+|++||.. ||..|+|.. |-|.+.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a 191 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-LLVQRA 191 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEC
Confidence 4578999999987 5567888999999998775321 11 46899999999999999995 999998865 888887
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 136
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.87 E-value=3.4e-05 Score=57.92 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=58.3
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcC-cEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEECC
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCG-VILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G-~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp~d 78 (151)
.+.|.|.|.|.. ..+.+.+.|++|| .|.+....+...++..|+|.+..+|++||. .||..++ |.. |-|....
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~a~ 195 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH-LRVSFSK 195 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS-CCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe-EEEEeec
Confidence 567889999987 4557788899999 998877545567899999999999999999 7999998 543 5555443
No 137
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.86 E-value=7.9e-05 Score=57.99 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=59.9
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcC-cEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCG-VILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G-~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp~d~ 79 (151)
.+-|.|-++|+. ..+.+.+.|++|| +|.+....+...++..|+|.+..+|++||. .||..++ |.. |-|....+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~-l~v~~a~~ 227 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH-LRVSFSKS 227 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB-CEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe-EEEEEecC
Confidence 567899999998 4567788899999 999887645567899999999999999999 7999998 544 77766543
No 138
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.85 E-value=6.4e-05 Score=58.52 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|+ . ..+.|.+.|++||.|.++....+...+..|+|.+..+|++||. .||..+.|.. |-|.+..+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-l~v~~a~~ 109 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP-IRITLSKH 109 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB-CEEECCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEecC
Confidence 457899999998 5 6678888999999999887544446789999999999999996 8999998865 77777643
No 139
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.85 E-value=7.7e-05 Score=52.66 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCcEEeeccC-C------CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 20 NLVLREFEKCGVILKHVPG-P------RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~-p------~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
+.|.++|++||+|++.... + .....+.|+|.++.+|++|+. .||+.++|.. |-|..+++.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~-i~v~~~~~~ 97 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV-VVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEECHH
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE-EEEEEeCHH
Confidence 5799999999999988631 1 235799999999999999995 5999999976 777777663
No 140
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.84 E-value=5.3e-05 Score=54.43 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
..+.|.|-|.|+. ..+.+.+.|++||.|.+..... ++ ..+..|+|.+..+|++|++ .||..+.|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4567899999987 4567888899999998765311 12 4689999999999999999 699999885
No 141
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.84 E-value=6e-05 Score=54.26 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=58.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++ .-..+.+.+.|++||.|.++.. .....+-.|+|.+..+|++|+. .||..|.|.. |-|....+
T Consensus 38 ~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQ-LKVNIARK 110 (121)
T ss_dssp CCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB-CEEEECCS
T ss_pred CCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEeCC
Confidence 4567888885 5677889999999999998775 2456899999999999999995 5999998855 77877654
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.84 E-value=0.00013 Score=52.25 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcC-cEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCG-VILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G-~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-+.|.+.. +.+.+.|++|| +|...... .....+-.|.|.++.+|++|+. .||..|.|.. |-|....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~-i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV-ITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE-EEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEECC
Confidence 456788999999854 57777899999 88876542 1245799999999999999996 6999999976 8887754
No 143
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.83 E-value=4.5e-05 Score=55.70 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-|+|+..+. .|.+.|++||.|+++.... ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~-l~V~~a 124 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-LRVQMA 124 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC-CEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEC
Confidence 4567899999998655 6777899999998876421 123489999999999999997 5999998865 777776
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 144
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.83 E-value=0.00012 Score=57.88 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp 76 (151)
..+.|.|-+.|.. ..+.|.+.|++||.|.+....+....+..|+|.+..+|++||. .||..|. |.. |-|..
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~ 279 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA-MKISF 279 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE-EEEEE
Confidence 4567999999998 4557888999999999887544344799999999999999999 6999998 643 65554
No 145
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.80 E-value=6.3e-05 Score=54.72 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=55.9
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
.+.|.|-|+|+.. .+.+.+.|++||.|.+..... ++ ..+..|+|.++.+|++|+.. ||..++|.. |-|.+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-LLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE-EEEEeC
Confidence 4678899999874 567888899999998775321 11 35899999999999999995 999998855 766653
No 146
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.80 E-value=2.1e-05 Score=53.01 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=52.4
Q ss_pred EEEEecCCCCCH-HHHHHHHhhcC--cEEeeccC--C-CC--CCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECC
Q 031896 8 LIVPFRFPPADT-NLVLREFEKCG--VILKHVPG--P-RD--ANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 8 wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d 78 (151)
-|.|-+.|.+.+ +.+.+.|++|| +|.+.... + ++ ..+-.|.|.+..+|++|+ ..||..+.|.. |-|.+..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~-i~V~~~~ 81 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-PVVTPSN 81 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC-CEECCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE-EEEEECC
Confidence 366778988754 56888899999 88776421 1 11 348999999999999999 58999998866 7887776
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 147
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.80 E-value=6.9e-05 Score=59.65 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
..+-|.|-|+|++. .+.|.+.|++||.|.++.... ....+..|+|.+..+|++||..||..+.|.. |-|.+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-i~v~~ 114 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE-IIVSH 114 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE-CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE-EEEEE
Confidence 46789999999985 457888899999999875311 1357999999999999999999999998865 55544
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.79 E-value=3.2e-05 Score=52.86 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-|.|.. ..+.+.+.|++||.|.+.... ++ ...+-.|.|.+..+|++||. ||..++|.. |-|....
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~-l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK-LKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE-CEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE-EEEEECC
Confidence 3467889999987 555778889999999887531 11 23689999999999999999 999998855 6666643
No 149
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.78 E-value=0.00011 Score=52.03 Aligned_cols=62 Identities=24% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCHHHHHHHHhhcCcEEeeccC--C----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 17 ADTNLVLREFEKCGVILKHVPG--P----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 17 ~~~~~Vl~~F~~~G~I~~~~~~--p----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
+....|.++|++||+|++.... + ....+..|+|.+..+|++|+. .||+.++|.. |-|..+++
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~-i~v~~a~~ 93 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV-VKACFYNL 93 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCH
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE-EEEEEcCH
Confidence 4568999999999999987531 1 235799999999999999997 5999999976 88888876
No 150
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=0.00022 Score=50.04 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 20 NLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
..|.++|++||+|.++... .....+..|+|.+..+|++|+. .||..|+|.. |-|...++.
T Consensus 41 ~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~-l~v~~a~~~ 102 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ-ITAQAWDGT 102 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE-CEEEECCSC
T ss_pred HHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEeCCC
Confidence 5788999999999987531 1235789999999999999995 6999998865 888887663
No 151
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.77 E-value=0.00015 Score=52.31 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896 19 TNLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM 80 (151)
Q Consensus 19 ~~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~ 80 (151)
.+.|.++|++||+|+++... ......+.|+|.+..+|++|++ .||+.++|.. |-|..++..
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~-i~v~~~~~~ 93 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM-ITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEECHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEEcHH
Confidence 34789999999999987641 1235789999999999999997 5999999976 777777653
No 152
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=6.7e-05 Score=52.20 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcE----EeeccCC-CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVI----LKHVPGP-RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I----~~~~~~p-~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
..+.|.|-++|...+ +.+.+.|++||.| +...... ....+..|.|.+..+|++||.. ||..|.|.. |-|...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI-LVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB-CEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEc
Confidence 347899999998854 5677789999998 4333211 2347999999999999999985 999998865 788877
Q ss_pred Ch
Q 031896 78 DP 79 (151)
Q Consensus 78 d~ 79 (151)
.+
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 153
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.75 E-value=0.00011 Score=58.26 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=58.8
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
...+.|.|-|+|++.+ +.|.+.|++||.|.++... .......|.|.+..+|++||. .||..|.|.. |-|.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRP-LRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCce-eEeeec
Confidence 3457899999999854 5777788999999988753 356899999999999999998 7999998854 666653
No 154
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=4.7e-05 Score=49.15 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=51.6
Q ss_pred EEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
-|.|-|.|++. .+.+.+.|++||.|.+..... ....+-.|+|.++.+|++||+.....++|.- |-|..
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~v~~ 75 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT-IDPKV 75 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC-CEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE-EEEEe
Confidence 36788999874 457788899999998765311 1246999999999999999998778887754 55543
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.74 E-value=0.00016 Score=52.26 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=55.5
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+.|.|-|+|++. .+.+.+.|++||.|.++.... ....+-.|.|.++.+|++||. ++..++|.. |-|.+..+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~-i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKV-IDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEE-CCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeE-cccccccc
Confidence 5678899999984 457778899999999876421 123699999999999999999 467787755 66666544
No 156
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=0.00015 Score=53.03 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp 76 (151)
..+-|.|-+.|+.....-| +.|++||.|+++.... ....+-.|+|.+..+|++|+. .||..|.|.. |-|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~-l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP-LVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC-CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE-EEEEE
Confidence 3567889999998766544 5899999999876422 235789999999999999996 5999998875 77777
Q ss_pred CCh
Q 031896 77 LDP 79 (151)
Q Consensus 77 ~d~ 79 (151)
..+
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=0.00012 Score=50.94 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=50.7
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQING 68 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g 68 (151)
..+.|.|-++|+... +.+.+.|++||+|.+.... +++ ..+-.|+|.+..+|++||. .||..|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 457899999999854 5677788999999986531 122 3589999999999999999 79999854
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.72 E-value=0.00016 Score=52.46 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIV 72 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mI 72 (151)
..+.|.|-|+|++ ..+.+.+.|++| | .|.+.... ....+-.|.|.++.+|++||..||..+.|.. |
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS-L 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHGGGTTCEETTEE-C
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHHHhCCcEecCce-e
Confidence 4678999999998 455788889999 6 67766543 3578999999999999999999999998865 6
Q ss_pred EEEECC
Q 031896 73 GVKPLD 78 (151)
Q Consensus 73 GVkp~d 78 (151)
-|.+..
T Consensus 81 ~v~~~~ 86 (172)
T 2g4b_A 81 KIRRPH 86 (172)
T ss_dssp EEECCS
T ss_pred eecCCc
Confidence 666543
No 159
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.72 E-value=0.00022 Score=56.43 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred ccCCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEE
Q 031896 3 LISSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGV 74 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGV 74 (151)
....+.|.|-++|.+.+..-| +.|++||.|+++....+ ...+-.|+|.+..+|++|| ..||..|.|.. |-|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP-MRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE-EEE
Confidence 345778999999999776655 58999999999874222 3469999999999999999 67999998855 777
Q ss_pred EEC
Q 031896 75 KPL 77 (151)
Q Consensus 75 kp~ 77 (151)
...
T Consensus 85 ~~a 87 (282)
T 3pgw_A 85 QYA 87 (282)
T ss_pred EEe
Confidence 665
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.72 E-value=6.6e-05 Score=55.18 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=59.3
Q ss_pred cCCcEEEEecCCCCCHH-HHHHHHhhcCcEE--eeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896 4 ISSFLIVPFRFPPADTN-LVLREFEKCGVIL--KHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~--~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp 76 (151)
...+.|.|-|.|.+.+. .|.+.|++| .|+ ++... +. ...+-.|+|.++.+|++||.+|+..|+|.. |-|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~-I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY-IEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC-CCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE-EEEEE
Confidence 34678999999998554 677888999 676 44321 11 247999999999999999999999999986 88888
Q ss_pred CChH
Q 031896 77 LDPM 80 (151)
Q Consensus 77 ~d~~ 80 (151)
..+.
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 161
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=3.6e-05 Score=52.68 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhh-cCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCce-ecCeEEEEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEK-CGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQ-INGVLIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~-~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~i-i~g~~mIGVkp 76 (151)
..+-|.|-|+|+.. .+.+.+.|++ ||.|.+.... +++ ..+-.|.|.+..+|++||. .||.. |.|.. |-|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~-l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP-VRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC-CCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe-EEEEE
Confidence 45678899999984 4567788999 9999886531 122 4589999999999999999 69988 88855 55554
Q ss_pred CC
Q 031896 77 LD 78 (151)
Q Consensus 77 ~d 78 (151)
..
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 162
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.72 E-value=0.00047 Score=48.56 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChHHH
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPMQR 82 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~~~ 82 (151)
...|+.|=+.++.. -+.+.+.|.++|+|.+.... .....--|+|.++.+|.+|++. ||..+.|.- |-|+...+..-
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~-I~V~~A~e~~~ 83 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTT-IFAESPSENEV 83 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEECCCHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcE-EEEEECCHHHH
Confidence 46899999999984 45677788999999998753 2578899999999999999997 999998866 88888765433
Q ss_pred H
Q 031896 83 Q 83 (151)
Q Consensus 83 ~ 83 (151)
+
T Consensus 84 ~ 84 (89)
T 2wbr_A 84 Q 84 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.69 E-value=0.00018 Score=54.17 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=56.3
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
.+-|.|-|+|++ ..+.|.+.|++||.|.++.... ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-l~v~~~ 105 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN-IKVGRP 105 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC-CEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee-EEEecC
Confidence 457889999998 4557888999999999876421 235799999999999999999 7999998865 666554
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.69 E-value=0.00011 Score=53.08 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=51.2
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQING 68 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g 68 (151)
..+-|.|-|.|+.. .+.+.+.|++||.|.+..... ++ ..+..|+|.+..+|++||+ .||..+.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 45678999999874 457788899999998765311 11 2589999999999999999 79999966
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.69 E-value=0.00014 Score=55.60 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
..+.|.|-++|+.. .+.|.+.|++||.|+++.... + ...+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~-l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP-MDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB-CEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEec
Confidence 35789999999884 456778899999998875421 1 24689999999999999999 6999998866 6777654
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 4
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.68 E-value=9.2e-05 Score=58.68 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=61.5
Q ss_pred CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeecc--CCCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVP--GPRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
..+-|.|-|+|+. ..+.|.+.|++||.|.+... .+++ ..+..|+|.+..+|++||. .||..|+|.. |-|..+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a 261 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH-LRVSFC 261 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE-EEEEEe
Confidence 4567999999998 35899999999999977652 1222 4699999999999999999 6999998865 889988
Q ss_pred ChH
Q 031896 78 DPM 80 (151)
Q Consensus 78 d~~ 80 (151)
++.
T Consensus 262 ~~~ 264 (284)
T 3smz_A 262 APG 264 (284)
T ss_dssp CSS
T ss_pred cCC
Confidence 654
No 167
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.67 E-value=0.0001 Score=50.20 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccC----CCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPG----PRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~----p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-+.|.+.+. .+.+.|++||.|.+.... -....+-.|+|.+..+|++||..||..|.|.. |-|....+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC-CEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE-EEEEEcCC
Confidence 4567889999998554 677789999987662110 12356999999999999999999999998865 77777654
No 168
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.67 E-value=3.5e-05 Score=51.40 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896 7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~ 79 (151)
+-|.|-|+|++.. +.+.+.|++||.|.+..... ....+..|+|.+.. |++|+.. ||..+.|.. |-|.+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~-l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT-IRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS-CSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE-EEEEEcCC
Confidence 3577889998754 56777899999998875421 12469999999999 9999985 999998865 77877765
Q ss_pred H
Q 031896 80 M 80 (151)
Q Consensus 80 ~ 80 (151)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 169
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.67 E-value=0.00016 Score=55.91 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
.+-|.|-|+|++.+ +.+.++|++||.|.+++.. .+ ...+..|.|.++.+|++||..++..++|.- |-|++-.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~-l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD-LLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE-CEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE-EEEEEhHH
Confidence 46789999999855 5677889999999987531 11 236899999999999999999888998876 77888654
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.66 E-value=0.00057 Score=46.24 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=54.3
Q ss_pred ccCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceec-CeEEEEEEECChH
Q 031896 3 LISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQIN-GVLIVGVKPLDPM 80 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~-g~~mIGVkp~d~~ 80 (151)
....+.+.|-|.|.+.++ .+.++|++||.|.+.........+-.|+|+++.+|+++ ||..+. ++..|-|....+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~---~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL---CGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH---TTCEEEETTEEEEEEECC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH---cCCCcccCCEEEEEEEcCCC
Confidence 346788999999998655 57778999999999875333467999999999999843 555442 3366899888764
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.65 E-value=0.00038 Score=54.06 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=59.7
Q ss_pred CCcEEEEecCC-CC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFP-PA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp-~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-++| .. ..+.+.+.|++||+|+++....+....-.|.|.++.+|++|+. .||..+.|.. |-|.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~-l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK-MNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce-EEEEEcc
Confidence 45678899999 44 5567888999999999987533445789999999999999997 7999999966 7777754
No 172
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=0.00034 Score=49.15 Aligned_cols=73 Identities=10% Similarity=-0.004 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|.+.+ +.+.+.|++||+|+++.. ..+.++-.|.|++..+|++|+.. ||..+.|.- |-|....+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~-l~V~~a~~ 90 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP-IYIQYSNH 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE-EEEEEcCc
Confidence 456788889998855 467777999999998875 34578999999999999999984 688888855 66666543
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=0.00017 Score=48.07 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|.+. .+.+.+.|++||.|.+.........+-.|.|.+..+|++|+.. ...+.| ..|-|....+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g-~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKG-ISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETT-EEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCC-EEEEEEecCC
Confidence 35778899999984 4567788999999998875333467999999999999876443 334455 5577777655
No 174
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.59 E-value=0.00031 Score=50.90 Aligned_cols=74 Identities=18% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEee--------c--cCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKH--------V--PGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIV 72 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~--------~--~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mI 72 (151)
..+-|.|-++|+..+ +.+.+.|++||.|.+. . .......+..|.|.+..+|++||. .||..|.|.. |
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~-l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP-M 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE-C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE-E
Confidence 346789999998854 5677889999988652 1 111235799999999999999999 6999998865 7
Q ss_pred EEEECCh
Q 031896 73 GVKPLDP 79 (151)
Q Consensus 73 GVkp~d~ 79 (151)
-|....+
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8877643
No 175
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=0.00042 Score=47.04 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-++|+.. .+.|.++|++|+.|.-.....++ ..+-.|+|.+..+|++||. .||..|.|.. |-|....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~ 91 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK-VTLDWAKP 91 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEecC
Confidence 45678899999985 45677788999877655431122 3699999999999999998 5999998865 88888765
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.57 E-value=0.00033 Score=51.95 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIV 72 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mI 72 (151)
..+-|.|-|+|++. .+.+.+.|++| | .|++...+ ....+-.|.|.++.+|++||..||..|.|.. |
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~-i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS-L 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHGGGTTEEETTEE-E
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHHHhcCCEEcCce-E
Confidence 35678899999984 45788889999 5 56665542 3468999999999999999999999998865 7
Q ss_pred EEEECCh
Q 031896 73 GVKPLDP 79 (151)
Q Consensus 73 GVkp~d~ 79 (151)
-|.+..+
T Consensus 81 ~v~~~~~ 87 (198)
T 2yh0_A 81 KIRRPHD 87 (198)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 7777644
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.56 E-value=3.7e-05 Score=57.31 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.|-+.|.+. .+.|.++|++|| |+++... +.+ ..+-.|+|.++.+|++||.+||..|.|.. |-|.+..+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~-i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY-IELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC-CCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE-EEEEECCC
Confidence 34568888999984 457888899999 6665431 122 35899999999999999999999999876 77777654
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.55 E-value=0.0002 Score=51.83 Aligned_cols=73 Identities=18% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCe--EEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGV--LIVGVKP 76 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~--~mIGVkp 76 (151)
..+-|.|-|.|+..+ ..+.+.|++||.|.+.... +++ ..+..|+|.+..+|++||. .||..+.++ --|-|..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 456789999999854 5678889999999886531 122 3579999999999999995 599777541 2355544
Q ss_pred C
Q 031896 77 L 77 (151)
Q Consensus 77 ~ 77 (151)
.
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 179
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.55 E-value=0.00023 Score=49.98 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=42.5
Q ss_pred HHHHHHH-hhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEE
Q 031896 20 NLVLREF-EKCGVILKHVPGP----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGV 74 (151)
Q Consensus 20 ~~Vl~~F-~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGV 74 (151)
..|.++| ++||.|++..... ....+..|+|.++.+|++|+. .||+.++|.. |-|
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~-i~v 100 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP-IHA 100 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CCE
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE-EEE
Confidence 4566777 9999999886421 124699999999999999997 5999999866 444
No 180
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00066 Score=47.78 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CC--ceecCeEEEEEEECCh
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NG--MQINGVLIVGVKPLDP 79 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG--~ii~g~~mIGVkp~d~ 79 (151)
..+-|.|-++|.+.+ +.+.+.|++||.|.++... .+.+.-.|.|++..+|++|+.. || ..|.|.- |-|....+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~-l~V~~a~~ 90 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ-AFFNYSTS 90 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB-CEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEEccC
Confidence 356788999998854 5788889999999998753 3578999999999999999984 44 4577754 55665543
No 181
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.53 E-value=0.00036 Score=55.38 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=61.6
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcC--cEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCG--VILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk 75 (151)
..+-|.|-++|...+ +.|.++|++|| +|+++.... + ...+-.|.|.+..+|++||. .||..|.|.. |-|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~-l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-PVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC-CEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE-eEEE
Confidence 345689999999855 56778899999 898875311 1 13589999999999999999 6999999866 8999
Q ss_pred ECChHHHHHH
Q 031896 76 PLDPMQRQAL 85 (151)
Q Consensus 76 p~d~~~~~~l 85 (151)
...+......
T Consensus 146 ~a~~~~~~~~ 155 (229)
T 3q2s_C 146 PVNKQFLSQF 155 (229)
T ss_dssp ECCHHHHHHH
T ss_pred ECCCCccchh
Confidence 9887644433
No 182
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=0.00048 Score=49.32 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-C--CceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-N--GMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-n--G~ii~g~~mIGVkp~ 77 (151)
..+-|.|-++|.+.+ +.+.+.|++||+|.++... .+.++-.|.|.+..+|++|+.. | |..|.|.- |-|...
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~-l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP-IYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE-CCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEEc
Confidence 345688889998855 5678889999999998753 3578999999999999999983 4 57888854 444443
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.52 E-value=0.00028 Score=47.16 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~ 77 (151)
+.+-|.|-|.|++.. +.+.+.|++| +|.+... +....+-.|+|.++.+|++|+. .||..+.|.. |-|...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD-LIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE-EEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-eCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE-EEEEEc
Confidence 356688999998855 4677788999 8887754 2345799999999999999999 7999998866 777664
No 184
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.51 E-value=0.00045 Score=59.97 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=58.6
Q ss_pred CcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896 6 SFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d 78 (151)
.+-|.|-++|+..+. .|.++|++||.|+++.... + ...+..|+|.+..+|++||.. ||..|.|.. |-|....
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~-i~V~~a~ 180 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-VLVDVER 180 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE-EEEEEeC
Confidence 367999999998554 6778899999999875421 1 257999999999999999955 999998865 8888875
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 4
No 185
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.51 E-value=0.00015 Score=52.52 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=48.6
Q ss_pred CHHHHHHHHhhcCcEEeeccC-C-C-------CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896 18 DTNLVLREFEKCGVILKHVPG-P-R-------DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 18 ~~~~Vl~~F~~~G~I~~~~~~-p-~-------~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~ 79 (151)
..+.|.++|++||+|.++... + . ....+.|+|.+..+|++|+.. ||+.++|.. |-|..++.
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~-i~v~~~~~ 108 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-VVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEECH
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE-EEEEEcCh
Confidence 467899999999999987521 0 1 125899999999999999976 999999976 77776655
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.50 E-value=0.00024 Score=57.74 Aligned_cols=72 Identities=14% Similarity=0.012 Sum_probs=59.0
Q ss_pred CcEEEEecCCCCC----------HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCcee--------
Q 031896 6 SFLIVPFRFPPAD----------TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQI-------- 66 (151)
Q Consensus 6 ~~wVtVFGfp~~~----------~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii-------- 66 (151)
.+-+.|-|++.+. -+.+.++|++||+|.++... ...++-.|+|.++.+|++|+. .||+.|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~ 212 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW 212 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence 4678888999875 67888999999999988753 357899999999999999996 599999
Q ss_pred ----cCeEEEEEEECCh
Q 031896 67 ----NGVLIVGVKPLDP 79 (151)
Q Consensus 67 ----~g~~mIGVkp~d~ 79 (151)
.|.. |-|++..+
T Consensus 213 ~~~~~gr~-L~V~wA~~ 228 (240)
T 3u1l_A 213 DDRREGTG-LLVKWANE 228 (240)
T ss_dssp GGGGGSCC-CEEEECC-
T ss_pred cccCCCCE-EEEEEccC
Confidence 6655 88888743
No 187
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00041 Score=50.43 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=49.7
Q ss_pred CcEEEE--ecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCcee
Q 031896 6 SFLIVP--FRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQI 66 (151)
Q Consensus 6 ~~wVtV--FGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii 66 (151)
.+.+.| -|.+.+.. +.+.+.|++||+|.++.. +.+..+-.|+|.++.+|++|+. .||+.+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 355777 77887744 577788999999998876 4567899999999999999998 599887
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.38 E-value=0.00046 Score=50.42 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEe-----eccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILK-----HVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~-----~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|-|+|++.+ +.|.+.|++||.|.. ... .....+-.|+|.++.+|++||..||..+.|.. |-|.+..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~v~~~~ 89 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPK 89 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE-ETTTTEEEEEESSHHHHHHHHHGGGEEETTEE-EEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC-CccccEEEEEECCHHHHHHHHhcCCCEeCCeE-EEEecCC
Confidence 467889999999855 456668888887544 221 12457999999999999999999999999865 8888875
Q ss_pred h
Q 031896 79 P 79 (151)
Q Consensus 79 ~ 79 (151)
+
T Consensus 90 ~ 90 (175)
T 1fje_B 90 G 90 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.33 E-value=0.0017 Score=51.28 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=59.0
Q ss_pred CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECC
Q 031896 6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d 78 (151)
.+-|.|-|.|+..+ +.+.+.|++||.|.+.... + ++ ..+..|.|.+..+|++|+ ..||..++|.. |-|.+.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT-LYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEECC
Confidence 45688999999854 5788889999999876531 1 12 348999999999999999 77999998865 8888887
Q ss_pred hH
Q 031896 79 PM 80 (151)
Q Consensus 79 ~~ 80 (151)
+.
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 190
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.29 E-value=0.0015 Score=50.14 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=53.7
Q ss_pred cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896 7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL 77 (151)
Q Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~ 77 (151)
+.|.|=++|++.+ +.|.++|++||+|+++.... + ...+-.|.|.+..+|++||.. ||..+.|.. |-|.+.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~-i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP-VRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc-cccccc
Confidence 5677889999854 56778889999999875311 1 235899999999999999965 999998865 555553
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.28 E-value=0.0013 Score=48.20 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=51.7
Q ss_pred EEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCe-EEEEcCCHHHHHHHHH-hCCceecCe-EEEEEEECC
Q 031896 8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANW-MHILYQNRSDAQKALS-KNGMQINGV-LIVGVKPLD 78 (151)
Q Consensus 8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NW-i~i~y~~~~~A~rAL~-~nG~ii~g~-~mIGVkp~d 78 (151)
.|.|-+.+... .+.+.+.|++||+|.++.... ...+ -.|.|++..+|++|+. .||..|.|. ..|-|.-..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45677887664 457778899999999876422 2355 8999999999999998 599999763 345555443
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.0011 Score=46.47 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-------CCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-------RDANWMHILYQNRSDAQKALSKNGMQINGVL 70 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-------~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~ 70 (151)
..+-|.|-++|++.+ +.+.++|++||.|....... ....+-.|.|.++.+|++||..- ..++|..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~ 79 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKL 79 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcE
Confidence 356688999999854 56778899999998332211 12469999999999999999863 2355544
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.28 E-value=0.00093 Score=48.28 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CC-----CCCeEEEEcCCHHHHHHHHH-hCCceec-C-eEEEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PR-----DANWMHILYQNRSDAQKALS-KNGMQIN-G-VLIVG 73 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g-~~mIG 73 (151)
+.+-|.|-++|++. .+.+.+.|++||.|.+.... +. ....-.|+|.++.+|++|+. .||..+. + ...+-
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45778899999984 45788889999999887531 11 23589999999999999996 6887664 2 23355
Q ss_pred EEECCh
Q 031896 74 VKPLDP 79 (151)
Q Consensus 74 Vkp~d~ 79 (151)
+.+.++
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 666544
No 194
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.35 E-value=4.3e-05 Score=53.62 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=57.4
Q ss_pred CCcEEEEecCCCCCH-HHHHHHHhhcCcEEe--------eccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 5 SSFLIVPFRFPPADT-NLVLREFEKCGVILK--------HVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~--------~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
..+.|.|-|+|.... +.+.+.|++||.|.+ +.... ....+..|+|.+..+|++||. .||..|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 456788889988744 467788999999987 33211 123589999999999999999 599999886
Q ss_pred EEEEEEECChH
Q 031896 70 LIVGVKPLDPM 80 (151)
Q Consensus 70 ~mIGVkp~d~~ 80 (151)
. |-|....+.
T Consensus 86 ~-l~V~~a~~~ 95 (116)
T 2lcw_A 86 P-IKVSFATRR 95 (116)
Confidence 5 788777654
No 195
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00086 Score=48.86 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=57.3
Q ss_pred cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-C--CceecCeEEEEEEECCh
Q 031896 4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-N--GMQINGVLIVGVKPLDP 79 (151)
Q Consensus 4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-n--G~ii~g~~mIGVkp~d~ 79 (151)
...+-|.|-++|++.+ +.+.+.|++||.|+++.. ..+.+.-.|.|++..+|++|+.. | |..|.|.- |-|....+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~-l~V~~a~~ 106 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP-IYIQFSNH 106 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC-CEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE-EEEEEccC
Confidence 3456788999999855 567788999999998875 23568999999999999999984 4 56787755 66666543
No 196
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0033 Score=44.32 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCcEEEEecCCC-CCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CC--ceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPP-ADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NG--MQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~-~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG--~ii~g~~mIGVkp~d 78 (151)
..+-|.|=++|. +.+. .+.+.|++||+|.++.. ..+.+.-.|.|++..+|++|+.. || ..|.|.- |-|....
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~-l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP-VRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE-EEEEECC
Confidence 345688889999 7654 67778999999999875 33557899999999999999984 54 5688865 6666554
No 197
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0011 Score=47.86 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp~d 78 (151)
..+-|.|=++|.+ ..+.+.+.|++||+|.++... ...++-.|.|++..+|++|+.. ++..|.|.- |-|....
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~-l~V~~a~ 100 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC-VKVDLSE 100 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC-CEEEEEC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEECc
Confidence 4567888899986 556788999999999998753 4578999999999999999984 456677754 5555543
No 198
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.07 E-value=0.0021 Score=47.63 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=53.4
Q ss_pred cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCe-EEEEcCCHHHHHHHHHh-CCceecC-eEEEEEEECC
Q 031896 7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANW-MHILYQNRSDAQKALSK-NGMQING-VLIVGVKPLD 78 (151)
Q Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NW-i~i~y~~~~~A~rAL~~-nG~ii~g-~~mIGVkp~d 78 (151)
.+|.|-..+.. ..+.+.+.|++||+|.++........+ -.|.|.+..+|++|++. ||..|.| .+.|-|-.-.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 57888888876 445666778999999988643223345 89999999999999975 9998865 3445555443
No 199
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.07 E-value=0.0022 Score=44.36 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=51.2
Q ss_pred cEEEEecCCCCC-HHHHHHHHhhcCcE--EeeccC---CC--CCCeEEEEcCCHHHHHHHHHh-CCc----eecCeEEEE
Q 031896 7 FLIVPFRFPPAD-TNLVLREFEKCGVI--LKHVPG---PR--DANWMHILYQNRSDAQKALSK-NGM----QINGVLIVG 73 (151)
Q Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I--~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~~-nG~----ii~g~~mIG 73 (151)
..|.|-+.|++. .+.+.+.|++||.| .+++.. .+ ...+-.|+|.++.+|++||.. ||. .|+|.- |-
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~-i~ 88 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT-IG 88 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE-EE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE-EE
Confidence 357888999985 45778889999954 344321 11 235999999999999999975 775 577865 66
Q ss_pred EEECC
Q 031896 74 VKPLD 78 (151)
Q Consensus 74 Vkp~d 78 (151)
|..+.
T Consensus 89 V~~Ak 93 (95)
T 2lkz_A 89 VDFAK 93 (95)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 76553
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0023 Score=45.00 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=43.4
Q ss_pred CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 18 DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 18 ~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
.-+.+.++|++||+|+++........+-.|.|.++.+|++|+.. +.-+.|.- |-|.+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~-l~V~~a~ 88 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP-LKISWLE 88 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB-CEEECSS
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe-EEEEEcc
Confidence 45778889999999998875323456999999999999999997 43344433 4455443
No 201
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.99 E-value=0.00051 Score=49.29 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCC-HHHHHHHHhhcCcEEe--ec--cCC---CCCCeEEEEcCCHHHHHHHHHh-CCc----eecCeEE
Q 031896 5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILK--HV--PGP---RDANWMHILYQNRSDAQKALSK-NGM----QINGVLI 71 (151)
Q Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~--~~--~~p---~~~NWi~i~y~~~~~A~rAL~~-nG~----ii~g~~m 71 (151)
..+-|.|-++|... .+.+.++|++||.|.. +. ..+ ....+-.|+|.+. +|++|+.. ||. .|.|..
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~- 99 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT- 99 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE-
Confidence 34678899999884 4578888999999954 22 211 1247999999999 99999875 998 888865
Q ss_pred EEEEECCh
Q 031896 72 VGVKPLDP 79 (151)
Q Consensus 72 IGVkp~d~ 79 (151)
|-|....+
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 77777665
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.95 E-value=0.002 Score=50.99 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=56.9
Q ss_pred CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh--CCceec---CeEEEEEE
Q 031896 6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK--NGMQIN---GVLIVGVK 75 (151)
Q Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~--nG~ii~---g~~mIGVk 75 (151)
...|.|-|.|+.. ...|.+.|++||.|.+.... +++ ..+..|+|.+..+|.+||.. ||..+. |.. |-|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~-i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP-VIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB-CEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce-EEEe
Confidence 4678899999985 45777889999999987531 222 46889999999999999999 788874 544 7788
Q ss_pred ECCh
Q 031896 76 PLDP 79 (151)
Q Consensus 76 p~d~ 79 (151)
|.++
T Consensus 175 ~~~~ 178 (261)
T 3sde_A 175 PMEQ 178 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8765
No 203
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.91 E-value=0.0049 Score=43.66 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=53.1
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCce--ecCeEEEEEE
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQ--INGVLIVGVK 75 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~i--i~g~~mIGVk 75 (151)
..+-|.|=+.|++ ..+.+.+.|++||.|.+.... ...+.--|.|.+..+|++|+.. ||.. |.|.- |-|.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~-i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP-AFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE-EEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE-EEEE
Confidence 4566888899987 445788889999999988752 3568999999999999999985 6654 66754 4443
No 204
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.87 E-value=0.0033 Score=48.43 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=54.3
Q ss_pred cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-CCCeEEEEcCCHHHHHHHHH-hCCceecC-eEEEEEEECCh
Q 031896 7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-DANWMHILYQNRSDAQKALS-KNGMQING-VLIVGVKPLDP 79 (151)
Q Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-~~NWi~i~y~~~~~A~rAL~-~nG~ii~g-~~mIGVkp~d~ 79 (151)
..|.|-+.+...+ +.+.+.|++||+|.++..... ....--|.|.+..+|++|+. .||..|.| ...|-|....+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3566778887744 567778899999998764222 23478999999999999998 59999964 34477777654
No 205
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.84 E-value=0.0032 Score=48.78 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=49.5
Q ss_pred cEEEEecCCCCCH-HHHHHHHhhcCcE--EeeccCCC---CCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896 7 FLIVPFRFPPADT-NLVLREFEKCGVI--LKHVPGPR---DANWMHILYQNRSDAQKALS-KNGMQINGV 69 (151)
Q Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I--~~~~~~p~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~ 69 (151)
+-+.|.+.|++.+ +.+.+.|++||.| .+....+. ...+-.|.|.+..+|.+||. .||..|+|.
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 4588999999854 5677888999999 55443222 13799999999999999997 599999775
No 206
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0038 Score=44.51 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=48.7
Q ss_pred CCcEEEEecCCCCCHHH-----HHHHHhhc-CcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896 5 SSFLIVPFRFPPADTNL-----VLREFEKC-GVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVL 70 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~-----Vl~~F~~~-G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~ 70 (151)
+.+-|.|-..|...... +.+.|++| |.|+++. + ..-.|+|.+..+|++|++ .||..+.|.-
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----g-G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----G-CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----T-TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----c-CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44457788998885533 55799999 5999995 2 667799999999999997 5999998865
No 207
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0051 Score=46.45 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=52.4
Q ss_pred cEEEEecC----CCCCH-HHHHHHHhhcCcEEeecc--CCCC---CCeEEEEcCC----HHH----HHHHHH---hCCce
Q 031896 7 FLIVPFRF----PPADT-NLVLREFEKCGVILKHVP--GPRD---ANWMHILYQN----RSD----AQKALS---KNGMQ 65 (151)
Q Consensus 7 ~wVtVFGf----p~~~~-~~Vl~~F~~~G~I~~~~~--~p~~---~NWi~i~y~~----~~~----A~rAL~---~nG~i 65 (151)
+-|.|.|+ |+... ..|-.+|++||+|.+... -|.. -...-|+|.+ +.+ |.+|+. .||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 45889999 88744 577788999999998752 1222 4889999996 333 899988 39999
Q ss_pred ecCeEEEEEEECCh
Q 031896 66 INGVLIVGVKPLDP 79 (151)
Q Consensus 66 i~g~~mIGVkp~d~ 79 (151)
|+|.- |-|.-=+.
T Consensus 83 I~Gr~-irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFK-FEVILNKH 95 (136)
T ss_dssp ETTEE-EEEEECCT
T ss_pred ecCcE-EEEEECcc
Confidence 98855 77775433
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.043 Score=40.21 Aligned_cols=76 Identities=16% Similarity=-0.025 Sum_probs=58.8
Q ss_pred cccCCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCC-HHHHHHHHHh---CCceecCeEEEEEE
Q 031896 2 TLISSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQN-RSDAQKALSK---NGMQINGVLIVGVK 75 (151)
Q Consensus 2 ~~~~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~-~~~A~rAL~~---nG~ii~g~~mIGVk 75 (151)
++..++-|-|-|.+.. ....+.+.|++||+|..+.. ..+.---+|+|.+ ..+|++|+.. +|..|.|.. +-+.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~-~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE-VTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS-EEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE-EEEE
Confidence 4556777777778777 55678888899999998765 3355569999999 7888888887 688998854 8888
Q ss_pred ECCh
Q 031896 76 PLDP 79 (151)
Q Consensus 76 p~d~ 79 (151)
.+.-
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 8754
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.08 E-value=0.0088 Score=46.03 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=48.5
Q ss_pred CHHHHHHHHhhcCcEEeeccC----C-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896 18 DTNLVLREFEKCGVILKHVPG----P-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP 79 (151)
Q Consensus 18 ~~~~Vl~~F~~~G~I~~~~~~----p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~ 79 (151)
....+.++|++||+|.+.... . .....+.|+|.+..+|++|+.. ||+.++|.. |-|.-++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~-i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-VVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE-EEEEEcCH
Confidence 456788999999999987531 0 1236899999999999999985 999999977 66666664
No 210
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.49 E-value=0.031 Score=47.50 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=45.6
Q ss_pred ecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCcee
Q 031896 12 FRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQI 66 (151)
Q Consensus 12 FGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii 66 (151)
.|++.. .-+.+.+.|++||+|.++.. +.+..+--|+|.+..+|++|+.. ||+.+
T Consensus 26 ~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 26 GGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 455544 67788999999999998876 44778999999999999999996 99877
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.57 E-value=0.37 Score=34.70 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=57.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhh----c-CcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEK----C-GVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 78 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~----~-G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d 78 (151)
.+..|-|-|+|++ .-+.+.-+|++ - |+|.+.+.-+ +=.-|+|.++..|++-|++--..|+| ..|-|.|+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~-~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHG-AQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSS-SBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecC-eEEEEEcCC
Confidence 4678999999987 55588889988 3 5666666533 67799999999999999996667777 569999987
Q ss_pred hH
Q 031896 79 PM 80 (151)
Q Consensus 79 ~~ 80 (151)
+.
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.64 E-value=0.28 Score=35.11 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=39.3
Q ss_pred CCcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCCCCCCeEEEEcCCHHHHHHHHHh
Q 031896 5 SSFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGPRDANWMHILYQNRSDAQKALSK 61 (151)
Q Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p~~~NWi~i~y~~~~~A~rAL~~ 61 (151)
+..-|.+++||++ .+..|.+.|+.||.|. +.. +..=.-+.|.++..|..||+-
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~Wi----dDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI----DDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE----ETTEEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEE----cCCeEEEEecCHHHHHHHHHh
Confidence 4456777899998 8899999999998443 111 112235889999999999883
No 213
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.60 E-value=0.1 Score=46.11 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=48.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCe
Q 031896 6 SFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGV 69 (151)
Q Consensus 6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~ 69 (151)
.+.|.|-+.+....+.+++||++||.|.++....+.++.+-|.|.++.+++.+|..-+....+.
T Consensus 53 ~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXXXX 116 (464)
T ss_dssp HTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSSCCCCCCBC
T ss_pred cceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcccc
Confidence 4678888777778889999999999999988766788999999999999998888766555444
No 214
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.51 E-value=1.4 Score=32.30 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=56.7
Q ss_pred CCcEEEEecCCCCCHHHHHHH-Hhhc-----CcEEeeccCCCCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896 5 SSFLIVPFRFPPADTNLVLRE-FEKC-----GVILKHVPGPRDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL 77 (151)
Q Consensus 5 ~~~wVtVFGfp~~~~~~Vl~~-F~~~-----G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~ 77 (151)
+++.|.+|+.|....+.=++. .+.+ |+|.+..-.| +-.=.-|.|.+...|-||. ..||..|.|.. |-|-..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~gr~-Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV-IRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETTEE-EEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecCeE-EEecCH
Confidence 367899999999866655544 4778 8888875434 3344568899998877765 99999999866 777777
Q ss_pred ChHHHH
Q 031896 78 DPMQRQ 83 (151)
Q Consensus 78 d~~~~~ 83 (151)
+++.++
T Consensus 98 ~eL~~~ 103 (117)
T 2l9w_A 98 NDMKRY 103 (117)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766544
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.29 E-value=0.29 Score=35.14 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=37.8
Q ss_pred CcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCCCCCCeEEEEcCCHHHHHHHHHh
Q 031896 6 SFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGPRDANWMHILYQNRSDAQKALSK 61 (151)
Q Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p~~~NWi~i~y~~~~~A~rAL~~ 61 (151)
..-|.+.+||++ .+..|.+.|+.||.|. +.. +..=.-+.|.++..|..||+-
T Consensus 5 R~HV~~l~FP~ewKt~Di~~lFs~fggv~I~Wi----dDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI----DDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEEECCTTCCHHHHHHHTTTSEEEEEEEE----ETTEEEEEEEEECHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHHhccCCEEEEEE----cCCeEEEEecCHHHHHHHHHh
Confidence 456777799998 8899999999998554 222 112234678888888888873
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.51 E-value=9.8 Score=27.08 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=44.9
Q ss_pred CCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896 16 PADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP 76 (151)
Q Consensus 16 ~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp 76 (151)
++.+ ..+-..|.+++++....+-++ =-=|.|-|.++.+|.+|-.+ +|..+.|.- +-|.-
T Consensus 20 ~~~lk~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~-~r~YF 80 (104)
T 1wey_A 20 ESETRAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKE-MKLYF 80 (104)
T ss_dssp TTTHHHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEE-CEEEC
T ss_pred CHHHHHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCce-eEEEe
Confidence 3344 688889999999998765332 23689999999999999776 999999874 55544
No 217
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=42.88 E-value=63 Score=28.21 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=37.9
Q ss_pred EEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh
Q 031896 9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK 61 (151)
Q Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~ 61 (151)
|.+.+||+. ....|.+.|+.||.+- +.. -+..-..|.+.++.+|..+|+.
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~-V~w--iddt~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISW--IDDTSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCE-EEE--CSSSEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEE-EEE--EcCCeEEEEECCHHHHHHHHHH
Confidence 555689987 7789999999999643 332 3556688889999998877763
No 218
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=35.50 E-value=54 Score=22.85 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhhcCcEE-eeccC-CCCCCeEEEEcCCHHHHHHHHHhCCcee
Q 031896 16 PADTNLVLREFEKCGVIL-KHVPG-PRDANWMHILYQNRSDAQKALSKNGMQI 66 (151)
Q Consensus 16 ~~~~~~Vl~~F~~~G~I~-~~~~~-p~~~NWi~i~y~~~~~A~rAL~~nG~ii 66 (151)
|..+..|.+.+.+.|-=+ ..... .....++.|+.++...|.++|.+.|-.+
T Consensus 83 pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~~g~~v 135 (144)
T 2f06_A 83 PGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDL 135 (144)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHHcCCEE
Confidence 456777777777766433 21211 2356788899999999999999988655
No 219
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=35.41 E-value=1.2e+02 Score=23.43 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCcEEeeccCCCCCCeEEEEcC--CHHHHHHHHHhCCcee
Q 031896 20 NLVLREFEKCGVILKHVPGPRDANWMHILYQ--NRSDAQKALSKNGMQI 66 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~--~~~~A~rAL~~nG~ii 66 (151)
+.+.+.++++|- +.. +.+++.+-+... +..+..++|.+.|-.+
T Consensus 275 ~~l~~~L~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v 319 (360)
T 3hdo_A 275 EWFTTELRSIGY--DVI--PSQGNYLFATPPDRDGKRVYDGLYARKVLV 319 (360)
T ss_dssp HHHHHHHHHTTC--EEC--CCSSSEEEEECTTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHCCC--EEc--CCCccEEEEECCCCCHHHHHHHHHHCCEEE
Confidence 345555555542 122 234555555554 4556666677777554
No 220
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=32.22 E-value=89 Score=22.63 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=42.7
Q ss_pred EEecCCCC-CHHHHHHHHhh---cCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecC
Q 031896 10 VPFRFPPA-DTNLVLREFEK---CGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68 (151)
Q Consensus 10 tVFGfp~~-~~~~Vl~~F~~---~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g 68 (151)
+|-||+.. ++..+.++|.+ ||.-+... |..+.+|.|+=+.+......|.+.|-....
T Consensus 59 ~V~GL~~~~dlk~laK~LKkk~acgGtVk~~--~e~g~~I~IQGD~r~~I~~~L~~~G~~~~~ 119 (126)
T 2if1_A 59 TVQGIADDYDKKKLVKAFKKKFACNGTVIEH--PEYGEVIQLQGDQRKNICQFLVEIGLAKDD 119 (126)
T ss_dssp EEBSCCTTSCHHHHHTTHHHHTCCCEEEECC--TTTSSEEEESBCCHHHHHHHHHHHTSSCTT
T ss_pred EEeCCCCchhHHHHHHHHHHHhcCCeEEecC--CCCccEEEEcCCHHHHHHHHHHHcCCCChh
Confidence 47788764 57788888865 55555333 357799999999999999999998865443
No 221
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=30.44 E-value=1.8e+02 Score=22.22 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCcEEeeccCCCCCCeEEEEcC-CHHHHHHHHHhCCceec-------CeEEEEEEECChHHHHHHh
Q 031896 20 NLVLREFEKCGVILKHVPGPRDANWMHILYQ-NRSDAQKALSKNGMQIN-------GVLIVGVKPLDPMQRQALN 86 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~-~~~~A~rAL~~nG~ii~-------g~~mIGVkp~d~~~~~~l~ 86 (151)
+.+.+.++++| ++.. +..++.+-+.+. +..+..++|.++|-.+. +.++|++. ++.+.+.+.
T Consensus 274 ~~l~~~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~--~~~~i~~~~ 342 (354)
T 3ly1_A 274 QILLKALEDLK--LPYL--PSEGNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPADNWCRISLG--TPQEMQWVA 342 (354)
T ss_dssp HHHHHHHHHHT--CCBC--CCCSSEEEEECSSCHHHHHHHHHHTTEECCCCCTTCTTEEEEECC--CHHHHHHHH
T ss_pred HHHHHHHHHCC--CeEC--CCCceEEEEECCCCHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC--CHHHHHHHH
Confidence 34555555554 2222 345677777775 56666777777776654 34555543 454444443
No 222
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=29.40 E-value=2e+02 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCcee
Q 031896 20 NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQI 66 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii 66 (151)
+.+.+.++++|.+.... |.++|.+-+++.+..+..++|.+.|-.+
T Consensus 277 ~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~gI~v 321 (356)
T 1fg7_A 277 EYLIAALKEIPCVEQVF--DSETNYILARFKASSAVFKSLWDQGIIL 321 (356)
T ss_dssp HHHHHHHHHSTTEEEEC--CCSSSEEEEEETTHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHhCCCceEEC--CCCCeEEEEECCCHHHHHHHHHHCCEEE
Confidence 45667777888665443 4578888888776667777888888655
No 223
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=26.86 E-value=1.3e+02 Score=23.14 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=3.7
Q ss_pred CCeEEEEc
Q 031896 42 ANWMHILY 49 (151)
Q Consensus 42 ~NWi~i~y 49 (151)
.+|++|.+
T Consensus 357 ~~~iRi~~ 364 (393)
T 3kgw_A 357 ERVLRIGL 364 (393)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEe
Confidence 34444444
No 224
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=26.77 E-value=1.2e+02 Score=18.92 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=27.0
Q ss_pred EEEEecCCC-CCHHHHHHHHhhcCcEEeeccCCCCCCeEEEE---cCCHHHHHHHHHh
Q 031896 8 LIVPFRFPP-ADTNLVLREFEKCGVILKHVPGPRDANWMHIL---YQNRSDAQKALSK 61 (151)
Q Consensus 8 wVtVFGfp~-~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~---y~~~~~A~rAL~~ 61 (151)
||-|-=|.. +.++.+...+.+-|-=..+.. ++.|..|+ |.++.+|++++.+
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~---~~~~yRV~vGpf~~~~~A~~~~~~ 65 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEAKGFDSIVLL---KDGLYKVQIGAFSSKDNADTLAAR 65 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTCCEEEEE---ETTEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCCeEEec---CCcEEEEEECCcCCHHHHHHHHHH
Confidence 344433554 355666667766663222222 33555554 6777776665543
No 225
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=25.91 E-value=1.6e+02 Score=22.64 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceec----------CeEEEEEEECChHHHHHHhh
Q 031896 20 NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQIN----------GVLIVGVKPLDPMQRQALNE 87 (151)
Q Consensus 20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~----------g~~mIGVkp~d~~~~~~l~~ 87 (151)
+.+.+.++++..+. .. +.+++++-+.+.+..+..++|.+.|-.+. +.+.|++. ++.+.+.+.+
T Consensus 287 ~~l~~~l~~~~g~~-~~--~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~ 359 (367)
T 3euc_A 287 SRVAEGMAAHGGVT-VF--PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLE 359 (367)
T ss_dssp HHHHHHHHTSTTCE-EC--CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCcE-EC--CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHH
Confidence 45566666662232 22 35677777777777777788888886652 33455543 5554444443
No 226
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=25.75 E-value=90 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred ccCCcEEEEecCCCC----CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEc
Q 031896 3 LISSFLIVPFRFPPA----DTNLVLREFEKCGVILKHVPGPRDANWMHILY 49 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~----~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y 49 (151)
-+.++.|.+-|.+.. .++.|.+.+++.|.-.-...+...+.|+-|-|
T Consensus 32 ~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLlD~ 82 (130)
T 2id1_A 32 SLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLVDA 82 (130)
T ss_dssp SSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEEEE
T ss_pred cccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCcCccccCCCCCCEEEEec
Confidence 356788999999885 56778888888887554444567889998887
No 227
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=25.47 E-value=2.4e+02 Score=21.92 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=32.2
Q ss_pred CHHHHHHHHhhcCcEEee-ccCCCCCCeEEEEcCCHHHHHHHHH
Q 031896 18 DTNLVLREFEKCGVILKH-VPGPRDANWMHILYQNRSDAQKALS 60 (151)
Q Consensus 18 ~~~~Vl~~F~~~G~I~~~-~~~p~~~NWi~i~y~~~~~A~rAL~ 60 (151)
+...+.+++.+.|-++.. ...+...+|++|.+.++.+..+++.
T Consensus 306 ~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~~~~e~~~~~~ 349 (356)
T 1fg7_A 306 ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVID 349 (356)
T ss_dssp THHHHHHHHHHTTEECEECTTSTTCTTEEEEECCCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeCCHHHHHHHHH
Confidence 567788888899988876 3222235799999999888777665
No 228
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=23.57 E-value=91 Score=22.45 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=34.2
Q ss_pred ccCCcEEEEecCCCC----CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEc
Q 031896 3 LISSFLIVPFRFPPA----DTNLVLREFEKCGVILKHVPGPRDANWMHILY 49 (151)
Q Consensus 3 ~~~~~wVtVFGfp~~----~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y 49 (151)
-+.++.|.+-|.+.. .++.|.+.+++.|.-.....+...+.|+-|-|
T Consensus 32 ~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLlD~ 82 (125)
T 2o5a_A 32 LIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLIDL 82 (125)
T ss_dssp C--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEEEC
T ss_pred cccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccccccCCCCCCEEEEeC
Confidence 356788899999885 56678888888886554444567889998887
No 229
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=23.29 E-value=2.2e+02 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=8.6
Q ss_pred CHHHHHHHHHhCCcee
Q 031896 51 NRSDAQKALSKNGMQI 66 (151)
Q Consensus 51 ~~~~A~rAL~~nG~ii 66 (151)
+..+..++|.++|-.+
T Consensus 310 ~~~~~~~~l~~~gi~~ 325 (362)
T 3ffr_A 310 LPGEINKILEPFDMAV 325 (362)
T ss_dssp CHHHHHHHHGGGTEEE
T ss_pred CHHHHHHHHHHCCeEE
Confidence 4555555566555444
No 230
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=22.62 E-value=2e+02 Score=23.77 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=45.9
Q ss_pred cEEEEecCC---CCCHHHHHHHHhhcCc-EEeeccCCC-CCCeEE---EEcCC------HHHHHHHHHhCCceecCeEEE
Q 031896 7 FLIVPFRFP---PADTNLVLREFEKCGV-ILKHVPGPR-DANWMH---ILYQN------RSDAQKALSKNGMQINGVLIV 72 (151)
Q Consensus 7 ~wVtVFGfp---~~~~~~Vl~~F~~~G~-I~~~~~~p~-~~NWi~---i~y~~------~~~A~rAL~~nG~ii~g~~mI 72 (151)
+.+++|=.. |..+..+|..|...|- +.+++..|. +..|=+ |-++- -.+|.+.|++.+..+ .+ +
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~--ki-L 283 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWA--KT-L 283 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEE--EE-E
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeE--EE-E
Confidence 445555332 5689999999999995 445665553 456644 44432 235777777788766 33 9
Q ss_pred EEEECCh
Q 031896 73 GVKPLDP 79 (151)
Q Consensus 73 GVkp~d~ 79 (151)
|..|..+
T Consensus 284 GsYp~~~ 290 (329)
T 3luy_A 284 AVYPRRE 290 (329)
T ss_dssp EEEECCC
T ss_pred eeccCCC
Confidence 9999754
No 231
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=21.82 E-value=62 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.027 Sum_probs=36.6
Q ss_pred ecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH
Q 031896 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS 60 (151)
Q Consensus 12 FGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~ 60 (151)
||-+++..+.|...+++.|-=+.... .+.+||++. -+..++++||.
T Consensus 81 f~ps~~~v~~V~~wL~~~G~~~~~~~--~~~~~i~~~-gtv~~~e~~f~ 126 (552)
T 1t1e_A 81 HGASLDDFAEIRKFAEAHGLTLDRAH--VAAGTAVLS-GPVDAVNQAFG 126 (552)
T ss_dssp HSCCHHHHHHHHHHHHHTTCEEEEEE--TTTTEEEEE-EEHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHHHCCCceeEEe--cCCCEEEEE-eEHHHHHHHhC
Confidence 56667788999999999997554442 377999997 68999999995
No 232
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=21.15 E-value=2.1e+02 Score=19.70 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=41.1
Q ss_pred cEEEEe-cCCCC-CHHHHHHHHhh---cCc-EEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCce
Q 031896 7 FLIVPF-RFPPA-DTNLVLREFEK---CGV-ILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQ 65 (151)
Q Consensus 7 ~wVtVF-Gfp~~-~~~~Vl~~F~~---~G~-I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~i 65 (151)
..||+. |++.. +...++++|.+ ||. |.+. |..+.+|.|+=+.+......|.+.|-+
T Consensus 30 K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~---~~~g~~I~iQGD~r~~v~~~L~~~G~~ 91 (101)
T 2xzm_F 30 KCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEE---DEGKKVIKLNGDHRNQIQQFLSEEGIA 91 (101)
T ss_dssp EEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEEC---STTCEEEEEESCCHHHHHHHHHHHSSS
T ss_pred ccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecC---CCCceEEEEeCcHHHHHHHHHHHcCCC
Confidence 456654 99732 67788888865 544 5444 346789999999999999999988753
No 233
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=21.04 E-value=2.1e+02 Score=19.79 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=42.5
Q ss_pred cEEE-EecCCCC-CHHHHHHHHhh---cCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCce
Q 031896 7 FLIV-PFRFPPA-DTNLVLREFEK---CGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQ 65 (151)
Q Consensus 7 ~wVt-VFGfp~~-~~~~Vl~~F~~---~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~i 65 (151)
.+|| |-|++.. +...+.++|.+ ||.-+... |..+.+|.|+=+.+......|.+.|-+
T Consensus 37 K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~--~~~g~~I~iQGD~r~~v~~~L~~~g~~ 98 (108)
T 2ogh_A 37 KTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKD--PEMGEIIQLQGDQRAKVCEFMISQLGL 98 (108)
T ss_dssp CCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECC--TTSSCEEEEESSCHHHHHHHHHHHHTS
T ss_pred ceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecC--CCCceEEEEcCCHHHHHHHHHHHcCCC
Confidence 4565 5699753 67788888865 66655433 345789999999999999999888753
No 234
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=20.96 E-value=1.1e+02 Score=18.98 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=25.0
Q ss_pred CcccCCcEEEEecCCCCCHHHHHHHHhhcCcE
Q 031896 1 MTLISSFLIVPFRFPPADTNLVLREFEKCGVI 32 (151)
Q Consensus 1 ~~~~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I 32 (151)
|++-.+..++|-++....-..+++++.++|=.
T Consensus 1 ~~l~~G~~~~I~~i~~~~~~~~~~rL~~lGl~ 32 (75)
T 2gcx_A 1 MQFTPDSAWKITGFSRDISPAYRQKLLSLGML 32 (75)
T ss_dssp CCCCTTSEEEEECCCSSCCHHHHHHHTTTTCC
T ss_pred CCCCCCCEEEEEEEeCCCCHHHHHHHHHCCCC
Confidence 77888999999999874345678999887744
No 235
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.13 E-value=73 Score=20.26 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=19.9
Q ss_pred CHHHHHHHHhhcCcEEeeccCCCCCCeEEEE---cCCHHHHHHHHH
Q 031896 18 DTNLVLREFEKCGVILKHVPGPRDANWMHIL---YQNRSDAQKALS 60 (151)
Q Consensus 18 ~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~---y~~~~~A~rAL~ 60 (151)
+++.+...+...|--..+.. ++.|.+|+ |.++.+|++++.
T Consensus 22 ~A~~l~~~L~~~G~~a~i~~---~~~~yRV~vGpf~s~~~A~~~~~ 64 (81)
T 1uta_A 22 QAETVRAQLAFEGFDSKITT---NNGWNRVVIGPVKGKENADSTLN 64 (81)
T ss_dssp HHHHHHHHHHHHTCCEEEEE---CSSSEEEEESSCBTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEe---CCcEEEEEECCcCCHHHHHHHHH
Confidence 45555666655553322221 34565554 455555555443
No 236
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=20.00 E-value=2.9e+02 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=35.0
Q ss_pred EecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH
Q 031896 11 PFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS 60 (151)
Q Consensus 11 VFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~ 60 (151)
.+.++. ....+.+++.+.|-++. ...+...+|++|.+.++.+..+++.
T Consensus 296 ~~~~~~-~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~~~~~i~~~~~ 343 (354)
T 3ly1_A 296 FHQLVV-PLKDYQTHMADAGVLIG-RAFPPADNWCRISLGTPQEMQWVAD 343 (354)
T ss_dssp EEECSS-CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECCCHHHHHHHHH
T ss_pred EEECCC-CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcCCHHHHHHHHH
Confidence 345655 67788888888887776 3223467999999999888776654
Done!