Query 031897
Match_columns 151
No_of_seqs 104 out of 1035
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 1.8E-45 4E-50 331.0 13.3 151 1-151 411-561 (763)
2 PLN03012 Camelliol C synthase 100.0 2.1E-44 4.5E-49 323.8 13.3 151 1-151 411-561 (759)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 3E-36 6.5E-41 268.9 13.0 149 1-151 299-448 (634)
4 TIGR01787 squalene_cyclas squa 100.0 6E-35 1.3E-39 260.0 13.0 146 1-151 289-436 (621)
5 KOG0497 Oxidosqualene-lanoster 100.0 6E-34 1.3E-38 250.6 9.7 151 1-151 410-560 (760)
6 TIGR01507 hopene_cyclase squal 100.0 1.9E-33 4.2E-38 250.8 13.1 141 1-151 309-449 (635)
7 cd02892 SQCY_1 Squalene cyclas 100.0 2.4E-32 5.2E-37 243.8 12.8 147 2-151 302-448 (634)
8 cd02889 SQCY Squalene cyclase 99.9 5.6E-21 1.2E-25 157.8 12.9 138 6-148 23-160 (348)
9 COG1657 SqhC Squalene cyclase 99.8 1.3E-19 2.9E-24 157.6 7.8 134 2-151 194-327 (517)
10 PF13249 Prenyltrans_2: Prenyl 99.6 1.9E-16 4.2E-21 111.1 5.7 92 5-124 20-113 (113)
11 PLN03012 Camelliol C synthase 99.6 9.6E-16 2.1E-20 139.0 10.5 109 6-126 616-724 (759)
12 TIGR01507 hopene_cyclase squal 99.6 2.1E-15 4.5E-20 135.3 10.4 111 5-126 377-495 (635)
13 PLN02993 lupeol synthase 99.6 3.5E-15 7.5E-20 135.5 10.7 110 5-126 615-724 (763)
14 TIGR03463 osq_cycl 2,3-oxidosq 99.5 6.3E-14 1.4E-18 125.8 10.1 104 6-126 503-606 (634)
15 TIGR01787 squalene_cyclas squa 99.5 1E-13 2.2E-18 124.2 10.7 102 7-124 487-588 (621)
16 cd02889 SQCY Squalene cyclase 99.4 2.5E-12 5.3E-17 106.3 10.6 102 6-124 217-318 (348)
17 cd00688 ISOPREN_C2_like This g 99.4 3.7E-12 7.9E-17 100.1 10.6 103 4-128 23-129 (300)
18 cd02892 SQCY_1 Squalene cyclas 99.4 4.3E-12 9.4E-17 113.9 11.0 104 6-125 502-605 (634)
19 cd02897 A2M_2 Proteins similar 99.3 9.7E-12 2.1E-16 101.4 10.3 66 48-125 214-279 (292)
20 PF13243 Prenyltrans_1: Prenyl 99.3 7.6E-13 1.6E-17 92.7 0.3 68 31-125 1-68 (109)
21 cd00688 ISOPREN_C2_like This g 99.3 5.2E-11 1.1E-15 93.5 10.3 100 5-122 79-179 (300)
22 PF13249 Prenyltrans_2: Prenyl 99.2 2.1E-11 4.5E-16 85.4 6.0 66 35-127 1-66 (113)
23 KOG0497 Oxidosqualene-lanoster 99.2 3.1E-11 6.6E-16 107.8 7.7 109 7-127 616-724 (760)
24 cd02896 complement_C3_C4_C5 Pr 99.0 1.4E-09 3.1E-14 89.3 9.8 77 5-90 78-159 (297)
25 PF13243 Prenyltrans_1: Prenyl 99.0 4.8E-10 1E-14 78.4 3.7 85 6-118 24-108 (109)
26 cd02897 A2M_2 Proteins similar 98.9 1.3E-08 2.9E-13 82.9 9.5 98 8-128 23-127 (292)
27 TIGR02474 pec_lyase pectate ly 98.8 1.1E-08 2.4E-13 84.2 6.4 61 74-139 42-102 (290)
28 cd02896 complement_C3_C4_C5 Pr 98.8 4.2E-08 9.2E-13 80.6 8.7 98 6-125 187-284 (297)
29 cd02890 PTase Protein prenyltr 98.7 9E-08 1.9E-12 77.7 9.2 94 5-125 74-168 (286)
30 cd02891 A2M_like Proteins simi 98.7 9.3E-08 2E-12 76.7 9.1 95 5-117 76-172 (282)
31 cd02891 A2M_like Proteins simi 98.7 1.1E-07 2.4E-12 76.2 9.5 81 27-129 47-127 (282)
32 cd02890 PTase Protein prenyltr 98.7 1.1E-07 2.4E-12 77.2 9.1 95 5-124 24-119 (286)
33 cd02894 GGTase-II Geranylgeran 98.5 7E-07 1.5E-11 73.1 8.9 93 6-124 77-169 (287)
34 TIGR02474 pec_lyase pectate ly 98.4 1.2E-06 2.5E-11 72.3 9.0 102 11-122 46-156 (290)
35 PF07678 A2M_comp: A-macroglob 98.2 5.2E-06 1.1E-10 66.6 6.6 97 5-115 24-125 (246)
36 cd02893 FTase Protein farnesyl 98.2 1.8E-05 3.9E-10 65.4 9.8 97 5-125 24-120 (299)
37 cd02893 FTase Protein farnesyl 98.2 1.6E-05 3.5E-10 65.6 9.5 94 5-124 73-167 (299)
38 COG1657 SqhC Squalene cyclase 98.1 2.6E-06 5.6E-11 75.0 4.8 105 7-127 379-483 (517)
39 cd02894 GGTase-II Geranylgeran 98.1 1.2E-05 2.6E-10 65.8 8.4 90 6-123 127-216 (287)
40 PLN03201 RAB geranylgeranyl tr 97.9 7E-05 1.5E-09 62.4 9.0 92 6-125 83-174 (316)
41 PLN03201 RAB geranylgeranyl tr 97.9 7.4E-05 1.6E-09 62.3 8.8 90 7-124 36-125 (316)
42 cd02895 GGTase-I Geranylgerany 97.9 8.1E-05 1.7E-09 61.8 8.9 99 5-125 89-187 (307)
43 cd02895 GGTase-I Geranylgerany 97.8 0.00019 4.1E-09 59.6 9.6 109 5-126 24-135 (307)
44 PF07678 A2M_comp: A-macroglob 97.7 0.00024 5.3E-09 56.9 9.0 103 5-125 129-231 (246)
45 PLN02710 farnesyltranstransfer 97.6 0.00056 1.2E-08 59.6 9.7 95 5-125 118-213 (439)
46 PF09492 Pec_lyase: Pectic aci 97.6 8.9E-05 1.9E-09 61.2 4.3 59 74-137 37-95 (289)
47 PLN02710 farnesyltranstransfer 97.6 0.00047 1E-08 60.0 8.9 97 5-125 69-165 (439)
48 PF09492 Pec_lyase: Pectic aci 97.5 0.00011 2.3E-09 60.8 4.2 105 11-125 41-158 (289)
49 PF00432 Prenyltrans: Prenyltr 97.1 0.00049 1.1E-08 41.0 2.5 22 105-126 3-24 (44)
50 KOG0365 Beta subunit of farnes 97.0 0.0039 8.5E-08 52.8 8.0 114 5-145 97-223 (423)
51 COG5029 CAL1 Prenyltransferase 96.9 0.0066 1.4E-07 50.8 8.3 95 5-126 101-197 (342)
52 PF00432 Prenyltrans: Prenyltr 96.7 0.0041 9E-08 36.9 4.7 41 31-88 3-43 (44)
53 COG1689 Uncharacterized protei 96.6 0.013 2.8E-07 47.0 7.9 100 7-123 122-248 (274)
54 PLN02592 ent-copalyl diphospha 96.5 0.0062 1.3E-07 56.7 6.0 83 5-115 94-176 (800)
55 KOG0366 Protein geranylgeranyl 96.1 0.039 8.4E-07 45.4 8.2 94 5-126 92-185 (329)
56 KOG0367 Protein geranylgeranyl 95.4 0.048 1E-06 45.5 6.3 72 31-123 176-248 (347)
57 TIGR01577 oligosac_amyl oligos 95.4 0.062 1.3E-06 48.5 7.4 94 9-118 298-395 (616)
58 COG5029 CAL1 Prenyltransferase 95.3 0.12 2.5E-06 43.5 8.1 84 11-123 160-243 (342)
59 PF01122 Cobalamin_bind: Eukar 94.8 0.17 3.7E-06 42.6 8.0 89 5-124 183-279 (326)
60 TIGR01535 glucan_glucosid gluc 94.1 0.28 6E-06 45.0 8.3 88 8-115 297-385 (648)
61 PLN02279 ent-kaur-16-ene synth 94.0 0.064 1.4E-06 50.0 4.0 81 5-114 52-135 (784)
62 PF01122 Cobalamin_bind: Eukar 93.9 0.092 2E-06 44.3 4.4 91 6-124 143-236 (326)
63 KOG0366 Protein geranylgeranyl 93.4 0.33 7.2E-06 40.1 6.8 82 14-123 53-134 (329)
64 cd00249 AGE AGE domain; N-acyl 93.0 0.27 5.8E-06 41.0 5.9 105 5-122 49-158 (384)
65 COG1689 Uncharacterized protei 91.2 0.2 4.4E-06 40.3 2.9 67 30-124 7-75 (274)
66 PLN02592 ent-copalyl diphospha 90.5 0.13 2.9E-06 48.1 1.5 43 73-125 95-137 (800)
67 KOG1366 Alpha-macroglobulin [P 89.6 0.7 1.5E-05 45.9 5.7 102 5-125 1095-1197(1436)
68 TIGR01535 glucan_glucosid gluc 89.5 1.4 3.1E-05 40.4 7.3 83 24-123 246-334 (648)
69 TIGR01577 oligosac_amyl oligos 88.4 2.3 4.9E-05 38.5 7.8 36 77-123 299-334 (616)
70 PLN02279 ent-kaur-16-ene synth 88.4 0.29 6.2E-06 45.8 2.0 24 102-125 72-95 (784)
71 KOG0365 Beta subunit of farnes 86.1 3.7 8.1E-05 35.2 7.2 74 22-123 214-288 (423)
72 PF07221 GlcNAc_2-epim: N-acyl 86.0 2.7 5.9E-05 34.8 6.4 101 7-122 19-124 (346)
73 PF07470 Glyco_hydro_88: Glyco 83.7 2.4 5.3E-05 35.0 5.1 79 27-121 213-294 (336)
74 KOG0367 Protein geranylgeranyl 76.3 9.3 0.0002 32.2 6.1 90 32-132 61-154 (347)
75 KOG1366 Alpha-macroglobulin [P 74.7 7.5 0.00016 39.0 6.0 48 72-125 999-1046(1436)
76 cd00249 AGE AGE domain; N-acyl 73.8 18 0.00038 30.0 7.4 107 9-126 242-350 (384)
77 COG4225 Predicted unsaturated 69.3 11 0.00024 32.2 5.1 136 5-143 129-272 (357)
78 COG1331 Highly conserved prote 69.1 17 0.00038 33.6 6.6 98 11-124 413-513 (667)
79 PF05382 Amidase_5: Bacterioph 68.1 8.2 0.00018 28.9 3.7 42 31-90 2-44 (145)
80 COG2942 N-acyl-D-glucosamine 2 66.4 31 0.00067 29.9 7.3 113 8-139 54-175 (388)
81 PF15144 DUF4576: Domain of un 65.2 7.6 0.00016 26.3 2.7 29 102-130 55-83 (88)
82 COG2373 Large extracellular al 64.5 9.4 0.0002 38.8 4.3 62 73-134 1168-1231(1621)
83 cd04794 euk_LANCL eukaryotic L 63.4 84 0.0018 25.9 9.6 46 78-127 167-212 (343)
84 PLN03009 cellulase 63.1 81 0.0018 28.2 9.6 111 11-123 7-137 (495)
85 cd04794 euk_LANCL eukaryotic L 60.7 47 0.001 27.4 7.3 94 24-135 183-281 (343)
86 PF07470 Glyco_hydro_88: Glyco 60.3 16 0.00034 30.1 4.4 39 10-50 251-294 (336)
87 KOG3760 Heparan sulfate-glucur 60.1 7 0.00015 34.3 2.3 35 101-135 378-413 (594)
88 PF00759 Glyco_hydro_9: Glycos 59.8 8.6 0.00019 33.0 2.8 24 99-122 94-117 (444)
89 PF07221 GlcNAc_2-epim: N-acyl 57.8 14 0.0003 30.5 3.7 39 6-44 78-118 (346)
90 PLN02567 alpha,alpha-trehalase 50.8 1.1E+02 0.0023 27.8 8.3 33 8-44 155-187 (554)
91 PF11329 DUF3131: Protein of u 50.5 69 0.0015 27.6 6.8 83 5-92 30-122 (367)
92 cd04791 LanC_SerThrkinase Lant 48.2 93 0.002 24.9 7.1 83 24-123 100-183 (321)
93 PF07944 DUF1680: Putative gly 47.7 52 0.0011 29.2 5.9 77 24-112 78-157 (520)
94 PF00627 UBA: UBA/TS-N domain; 44.5 36 0.00078 18.8 2.9 8 31-38 30-37 (37)
95 PF07944 DUF1680: Putative gly 43.0 60 0.0013 28.8 5.5 98 27-129 9-109 (520)
96 PLN02909 Endoglucanase 40.7 1.1E+02 0.0024 27.3 6.7 94 26-123 34-144 (486)
97 cd00194 UBA Ubiquitin Associat 40.0 51 0.0011 18.0 3.1 22 12-39 16-37 (38)
98 PLN00119 endoglucanase 39.0 1.6E+02 0.0034 26.4 7.4 37 8-44 9-49 (489)
99 COG2373 Large extracellular al 36.8 1.1E+02 0.0025 31.4 6.8 72 27-119 1197-1269(1621)
100 PRK03430 hypothetical protein; 36.5 37 0.00081 25.7 2.7 27 13-42 25-51 (157)
101 COG3387 SGA1 Glucoamylase and 35.7 3E+02 0.0066 25.3 8.9 112 6-137 477-588 (612)
102 COG2942 N-acyl-D-glucosamine 2 33.4 2.9E+02 0.0064 24.0 8.0 98 6-119 113-213 (388)
103 COG3387 SGA1 Glucoamylase and 32.5 66 0.0014 29.5 4.2 37 77-124 289-325 (612)
104 PLN02266 endoglucanase 31.4 2.1E+02 0.0045 25.8 7.0 22 102-123 133-154 (510)
105 PRK10137 alpha-glucosidase; Pr 31.0 2.1E+02 0.0045 27.3 7.1 111 8-126 349-468 (786)
106 COG4225 Predicted unsaturated 29.7 3.7E+02 0.008 23.2 8.7 79 27-120 230-308 (357)
107 smart00165 UBA Ubiquitin assoc 29.3 81 0.0018 17.1 2.8 8 31-38 29-36 (37)
108 PLN02171 endoglucanase 29.0 4E+02 0.0087 24.7 8.5 20 102-121 119-138 (629)
109 PLN02613 endoglucanase 28.8 3.1E+02 0.0067 24.6 7.6 96 25-122 25-135 (498)
110 PLN02340 endoglucanase 27.6 2.4E+02 0.0053 26.0 6.9 20 24-43 28-47 (614)
111 PLN02308 endoglucanase 27.4 3.5E+02 0.0076 24.2 7.7 21 102-122 115-135 (492)
112 PF07499 RuvA_C: RuvA, C-termi 26.1 1.5E+02 0.0032 17.4 3.8 29 76-114 1-29 (47)
113 PF12753 Nro1: Nuclear pore co 25.8 72 0.0016 27.9 3.0 63 28-120 331-393 (404)
114 PF00723 Glyco_hydro_15: Glyco 25.4 93 0.002 26.8 3.7 60 72-134 122-183 (448)
115 PHA01516 hypothetical protein 24.9 60 0.0013 22.0 1.9 38 1-45 50-87 (98)
116 PF02757 YLP: YLP motif; Inte 24.2 26 0.00055 14.1 0.0 7 135-141 3-9 (9)
117 cd04791 LanC_SerThrkinase Lant 24.1 3.4E+02 0.0074 21.6 6.7 36 10-45 140-178 (321)
118 PF05426 Alginate_lyase: Algin 23.8 74 0.0016 25.1 2.6 93 7-117 165-267 (272)
119 PF10022 DUF2264: Uncharacteri 23.3 3.8E+02 0.0082 22.9 6.9 102 10-131 157-262 (361)
120 PF02943 FeThRed_B: Ferredoxin 23.2 96 0.0021 22.0 2.8 38 30-89 2-39 (108)
121 KOG2918 Carboxymethyl transfer 23.2 34 0.00073 29.1 0.5 38 103-150 204-241 (335)
122 PF04361 DUF494: Protein of un 23.0 88 0.0019 23.5 2.7 27 13-42 25-51 (155)
123 PF10022 DUF2264: Uncharacteri 22.0 5E+02 0.011 22.2 7.6 83 6-120 106-192 (361)
124 PF00010 HLH: Helix-loop-helix 22.0 74 0.0016 18.9 1.8 16 101-116 40-55 (55)
125 COG1331 Highly conserved prote 21.6 2E+02 0.0043 26.9 5.1 42 96-137 176-218 (667)
126 PLN02345 endoglucanase 20.6 1.1E+02 0.0024 27.2 3.3 22 102-123 85-106 (469)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=1.8e-45 Score=331.01 Aligned_cols=151 Identities=62% Similarity=1.137 Sum_probs=143.2
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
||+|+||+|||||+++||+++|+.+++++.|+||++||+++|+.++++|+|.++||+.++|||+||+.+++|||+||||+
T Consensus 411 ~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe 490 (763)
T PLN02993 411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAE 490 (763)
T ss_pred EcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHH
Confidence 79999999999999999999999766799999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
+|+|++++.+.+.+.+|.++..+++++||+||++|||+||||++||++|+..|||+|||+|+||++|+||+
T Consensus 491 ~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~ 561 (763)
T PLN02993 491 ALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVERE 561 (763)
T ss_pred HHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCC
Confidence 99998888777655567778889999999999999999999999999999999999999999999999996
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=2.1e-44 Score=323.79 Aligned_cols=151 Identities=65% Similarity=1.193 Sum_probs=143.3
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
||+|+||+|||+|+++||+++|+.+++.+.++||++||+++|+.++++|+|.++||+.++|||+||+.+++|||+||||+
T Consensus 411 ~q~~gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe 490 (759)
T PLN03012 411 MQSFGSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAE 490 (759)
T ss_pred EcCCCCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHH
Confidence 79999999999999999999999888889999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
+|+|++.+...+++.+|.++..++++|||+||++|||+||||++||++|++.|||+|||+|+|+++|+||+
T Consensus 491 ~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~ 561 (759)
T PLN03012 491 GFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHE 561 (759)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCC
Confidence 99998877766655667788899999999999999999999999999999999999999999999999986
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=3e-36 Score=268.87 Aligned_cols=149 Identities=40% Similarity=0.650 Sum_probs=131.8
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLT-DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~-~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (151)
||+|.+++|||+|+++||.++|+. +++++.|+||++||+++|+.++ .|+|.+.+++.++|||+|++.+++|||+||||
T Consensus 299 ~q~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta 377 (634)
T TIGR03463 299 YNGYNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTA 377 (634)
T ss_pred EeeCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHH
Confidence 589988889999999999999973 3567999999999999999754 68999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
++|+||+.+.+.+.. ...++..+++++||+||+++||+||||++|+++++..|||+|||+|+|+++|+|++
T Consensus 378 ~~L~Al~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~ 448 (634)
T TIGR03463 378 EALSASLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVS 448 (634)
T ss_pred HHHHHHHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCC
Confidence 999999987542110 00125678999999999999999999999999999999999999999999999975
No 4
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=6e-35 Score=260.05 Aligned_cols=146 Identities=41% Similarity=0.673 Sum_probs=130.8
Q ss_pred CCcCCCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccch
Q 031897 1 MQSFGSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (151)
||+|+||+|||+|+++||+++|. .+++++.|+||++||+++|++++++|+|...+++..||||+|++.+++|||+|||
T Consensus 289 ~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDt 368 (621)
T TIGR01787 289 MQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDT 368 (621)
T ss_pred EecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhH
Confidence 58999999999999999999995 3456899999999999999997777999876666667999999999999999999
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
+.+++++..+... +.++..+++++|++||+++||+||||++|+++++..|||++||.|+|+++|+|++
T Consensus 369 a~~~la~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~ 436 (621)
T TIGR01787 369 AVVALKAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPP 436 (621)
T ss_pred HHHHHHHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCC
Confidence 9999887665421 2356789999999999999999999999999999999999999999999999985
No 5
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6e-34 Score=250.64 Aligned_cols=151 Identities=62% Similarity=1.052 Sum_probs=146.9
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
||+++||+|||+|+++||.+++.++++.+.++||.+||.+.|+.++++|+..++|||.++|||+||+.+++||++||||+
T Consensus 410 mq~~~sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaE 489 (760)
T KOG0497|consen 410 MQGFNSQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAE 489 (760)
T ss_pred EeecchhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHH
Confidence 68999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
++..++-++.++.+.+|..++.+++..+|+.|+.+|+.+||+.+|++.+...|||.|||+|+|+++|+||+
T Consensus 490 al~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~ 560 (760)
T KOG0497|consen 490 ALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYE 560 (760)
T ss_pred HHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeec
Confidence 99999999888888999999999999999999999999999999999999999999999999999999985
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=1.9e-33 Score=250.83 Aligned_cols=141 Identities=24% Similarity=0.364 Sum_probs=125.6
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
+|+|+||+|||+++++||.++|++++ ++.|+||.+||+++|+.. +|+|.+.+++.++|||+|++.+++|||+|||++
T Consensus 309 ~~~~~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~ 385 (635)
T TIGR01507 309 FQACVSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAV 385 (635)
T ss_pred ecCCCCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHH
Confidence 58899999999999999999998777 899999999999999984 789999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
+|+||..+. .+ ..+...++++||++||+++||+||||++|+++|+..||+++|+.+ |+ +|+|++
T Consensus 386 ~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d-~~-~~~D~~ 449 (635)
T TIGR01507 386 VVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCD-FG-AVTDPP 449 (635)
T ss_pred HHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccc-cc-cccCCC
Confidence 999999873 22 123457899999999999999999999999999999999997443 33 688875
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.98 E-value=2.4e-32 Score=243.79 Aligned_cols=147 Identities=46% Similarity=0.785 Sum_probs=131.7
Q ss_pred CcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHH
Q 031897 2 QSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 2 q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
|.|+||+|||+|+++||+++|+.+++++.|+||++||+++|+. +.+|+|...+++.++|||+|++.++++||+|||+.+
T Consensus 302 ~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~-~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~ 380 (634)
T cd02892 302 QTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQIL-DNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEA 380 (634)
T ss_pred cCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcC-CCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHH
Confidence 5679999999999999999998756689999999999999983 348999999999999999999999999999999999
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
|+||+.+...+. .|..+..+++++|++||+++||+||||.+|++++...|++.++|+|+||++|+|++
T Consensus 381 l~AL~~~~~~~~--~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~ 448 (634)
T cd02892 381 LKALLRLQELPP--FGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPP 448 (634)
T ss_pred HHHHHHhhccCC--cchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCC
Confidence 999999976432 13456789999999999999999999999999999987877889999999998874
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.86 E-value=5.6e-21 Score=157.84 Aligned_cols=138 Identities=45% Similarity=0.733 Sum_probs=113.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++|+|+++++||.++|..+++.+.++||++||+++|.+.. .++|...+++.+.|||+|+...+++|++|+|+.++++|
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~-~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al 101 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDN-PDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 101 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCC-CCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHH
Confidence 78999999999999999866678999999999999997643 33477778888999999998877889999999999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhcccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVII 148 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~ 148 (151)
+.+....+ .+..+..+.++++++||+++|++||||..|...+...+++. +.+.+++.+.
T Consensus 102 ~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~--~~~~~~~~~~ 160 (348)
T cd02889 102 LRLQKKPP--DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL--IPEVDGDIMI 160 (348)
T ss_pred HHhhccCc--ccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhc--CchhhcCCcc
Confidence 99875432 14456789999999999999999999999988777777764 2334454443
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.79 E-value=1.3e-19 Score=157.56 Aligned_cols=134 Identities=31% Similarity=0.507 Sum_probs=121.0
Q ss_pred CcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHH
Q 031897 2 QSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 2 q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
+.+++|+|||+|+..++..+|..+...+.|.+|+.||..+|... ..+|... ++..+|+|+|+..++++||.|+|+.+
T Consensus 194 ~~l~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~--~~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~ 270 (517)
T COG1657 194 WLLGSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLK--YADWAVK-RKFSPGGWGFSNINTGYPDADDTAGV 270 (517)
T ss_pred cccccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHH--hhccccc-cccCCCccceeecccCCCCchhhhHH
Confidence 56799999999999999999998762279999999999999986 5677766 88889999999999999999999999
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~ 151 (151)
+++|.... +.+.+.++++|+..|||..|||.+|+..+...|++.+|+.+.| +|++++
T Consensus 271 ~~al~~~~-----------~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s 327 (517)
T COG1657 271 VRALIGVQ-----------SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPS 327 (517)
T ss_pred HHHHHhhc-----------chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccCC
Confidence 99999875 4677888999999999999999999999999999999999988 677654
No 10
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.65 E-value=1.9e-16 Score=111.10 Aligned_cols=92 Identities=28% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHH--HHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKA--HDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA--~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.+.+++|++|+.||...|..++ ..++ ++||+++|.+ +|+|. . ......++++.|..+|
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~~----~~~~~~~~~L~~~q~~---dGg~~------------~-~~~~~~~~~~~t~~~l 79 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEPD----RDRAAAVEWLLSQQNP---DGGWG------------S-NPDGGPPDVYTTYVAL 79 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHHC----HHHHHHHHHHHHHB-T---TSGBB------------S-STTTT-BSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHhCCC---CCCcc------------C-CCCCCCccHHHHHHHH
Confidence 5789999999999999998654 5555 9999999998 45543 2 2223356888999999
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.+|..+.. +...+.++++++||+++|++||||++
T Consensus 80 ~~l~~~~~--------~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 80 AALELLGR--------PDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHT---------GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHcCC--------CcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99988753 22368899999999999999999974
No 11
>PLN03012 Camelliol C synthase
Probab=99.64 E-value=9.6e-16 Score=138.97 Aligned_cols=109 Identities=23% Similarity=0.204 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
.-++.|++|+.||+++|.+....+.|+||++||+++|++ +|+|++.+..+....|. ....+.+.+..||+||+||
T Consensus 616 ~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~---DGGWGEs~~Sc~~~~y~--~~~~~~S~~~qTaWAl~aL 690 (759)
T PLN03012 616 CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKD---NGGWGESYLSCPKKIYI--AQEGEISNLVQTAWALMGL 690 (759)
T ss_pred cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCC---CCCcCCCCCCCCCcccc--CCCCCCCcHHHHHHHHHHH
Confidence 346789999999999998755369999999999999998 69999877655444322 1111236678899999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
++++..+ .+.++|+||++||++.|.+||+|..-+
T Consensus 691 i~ag~~~-------~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~ 724 (759)
T PLN03012 691 IHAGQAE-------RDPIPLHRAAKLIINSQLENGDFPQQE 724 (759)
T ss_pred HHcCCCC-------CCcHHHHHHHHHHHHcccCCCCCCCce
Confidence 9986432 345789999999999999999998654
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.62 E-value=2.1e-15 Score=135.32 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCChhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCC---CccccccC--CCCCcccccc
Q 031897 5 GSQTWDCALAIQALLACNLTD--EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHIS---KGGWTFSN--KDHGWQVSDC 77 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~---~GgW~fs~--~~~~~pd~d~ 77 (151)
-+.+|||+.++.||...+.++ .+++.|+||++||+++|++ +|+|...-+... .+--.|+. .-..+|++|+
T Consensus 377 ~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~---dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~ 453 (635)
T TIGR01507 377 YPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSS---NGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADV 453 (635)
T ss_pred CCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCC---CCCEecccCCcchhHHhcCCccccccccCCCCccH
Confidence 379999999999999987532 2568999999999999998 588853211100 00001221 0113688999
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCc-cccC
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGV-PAWE 126 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW-~~~~ 126 (151)
|+.+|++|..++. ...+++|+||++||+++|++|||| +.|.
T Consensus 454 Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~dG~W~g~wg 495 (635)
T TIGR01507 454 TARVLECLGSFGY--------DDAWPVIERAVEYLKREQEPDGSWFGRWG 495 (635)
T ss_pred HHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCCCCCCccCCC
Confidence 9999999998752 224789999999999999999999 5555
No 13
>PLN02993 lupeol synthase
Probab=99.61 E-value=3.5e-15 Score=135.53 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
...++.|++|+.||+++|.+.+..+.|+||++||+++|++ +|+|++.+..+....|. ....+.+.+..||+||+|
T Consensus 615 v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~---DGGWGEs~~S~~~~~y~--~~~~~~St~~qTAwAlla 689 (763)
T PLN02993 615 ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRD---DGGWGESYLSCPEQRYI--PLEGNRSNLVQTAWAMMG 689 (763)
T ss_pred cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC---CCCcCcCcCcCCCcccc--cCCCCCCchhhHHHHHHH
Confidence 3567899999999999998766468999999999999998 69998776554444322 111123566789999999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
|++++.. ..+.++|+||++||++.|.+||+|..-+
T Consensus 690 L~~aG~~-------~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~ 724 (763)
T PLN02993 690 LIHAGQA-------ERDLIPLHRAAKLIITSQLENGDFPQQE 724 (763)
T ss_pred HHHcCCC-------CCCcHHHHHHHHHHHhccCCCCCCCCcc
Confidence 9998542 2355799999999999999999998643
No 14
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.51 E-value=6.3e-14 Score=125.78 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
..++.|+++++||.++|.+.+ .+.|+||++||+++|++ +|+|++.+..+....+ .....+.+..||+||+||
T Consensus 503 ~~~Y~T~~al~aL~~~G~~~~-~~~i~rA~~~Ll~~Q~~---DGgWg~~~~s~~~~~y----~~~~~S~~~~TA~Al~aL 574 (634)
T TIGR03463 503 CFTYGTFHGVMGLRAAGASPD-DMALQRAAAWLRSYQRA---DGGWGEVYESCLQARY----VEGKQSQAVMTSWALLAL 574 (634)
T ss_pred CCcHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCC---CCCccCccCccccccc----cCCCCCcHHHHHHHHHHH
Confidence 356689999999999998766 78999999999999998 6888754332221211 122346778999999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
..++. ...++++|+++||++.|++||||+.=+
T Consensus 575 ~~~g~---------~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 575 AEAGE---------GGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred HHcCC---------cCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 98752 256889999999999999999998644
No 15
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.51 E-value=1e-13 Score=124.23 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=78.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
-++.|++++.||.++|......+.|+||++||+++|++ +|+|++.+....... +...+.+++..|++||+||+
T Consensus 487 y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~---DGGWge~~~s~~~~~----y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 487 YTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP---DGGWGEDCFSYEDPS----YVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred CchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC---CCCCCcCCccccccc----cCCCCCCCHHHHHHHHHHHH
Confidence 46789999999999997643248999999999999998 588875432211111 11123478889999999999
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+++. ...++++||++||+++|++||||+.
T Consensus 560 ~ag~---------~~~~ai~rgv~~L~~~Q~~dG~w~~ 588 (621)
T TIGR01787 560 AAGE---------ADSEAIERGVKYLLETQRPDGDWPQ 588 (621)
T ss_pred HcCc---------cchHHHHHHHHHHHHhCCCCCCCCC
Confidence 8753 2356899999999999999999975
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.39 E-value=2.5e-12 Score=106.30 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+.++.|++++.||..+|.... .+.++++++||+++|.+ +|+|.........+. +.....|++..|+++|++|
T Consensus 217 ~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~---dG~w~~~~~~~~~~~----~~~~~~~~~~~Ta~al~aL 288 (348)
T cd02889 217 CFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNP---DGGWGESYESYEDPS----YAGGGRSTVVQTAWALLAL 288 (348)
T ss_pred cchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCC---CCCcCCccccccccc----ccCCCCCcHHHHHHHHHHH
Confidence 467889999999999997644 78999999999999998 577764321111111 1112357889999999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+.+++ .+.+.++++++||+++||+||||.+
T Consensus 289 ~~~g~---------~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 289 MAAGE---------PDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HhcCC---------CCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 98753 2678999999999999999999987
No 17
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.39 E-value=3.7e-12 Score=100.10 Aligned_cols=103 Identities=28% Similarity=0.280 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHHcCCC----CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchH
Q 031897 4 FGSQTWDCALAIQALLACNLT----DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 4 ~~~~~wdTala~~AL~~~G~~----~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (151)
|..|+|.|++++++|...+.. ......++++++||++.|.+ +| +|++..... .+++..|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~---dG------------~~~~~~~~~-~~~~~~T~ 86 (300)
T cd00688 23 CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLS---DG------------GFSGWGGND-YPSLWLTA 86 (300)
T ss_pred CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCC---CC------------CccCCCCCC-CcchHhHH
Confidence 789999999999999998863 23578999999999999987 44 454432221 68899999
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCC
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPT 128 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~ 128 (151)
+++++|..+... + +...+.++++++||++.|++||||..+...
T Consensus 87 ~~~~~l~~~~~~-----~-~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 87 YALKALLLAGDY-----I-AVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred HHHHHHHHcCCc-----c-ccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 999999998642 1 357889999999999999999999988654
No 18
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.36 E-value=4.3e-12 Score=113.87 Aligned_cols=104 Identities=23% Similarity=0.250 Sum_probs=79.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+.++.|++++.||..+|.....++.++||++||+++|.+ +|+|.+.+.....+.+ ...+-+.+..||+||++|
T Consensus 502 ~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~---DGgWge~~~s~~~~~~----~~~~~s~~~~TA~AllaL 574 (634)
T cd02892 502 CYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNP---DGGWGESYLSYEDKSY----AGGGRSTVVQTAWALLAL 574 (634)
T ss_pred ccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCC---CCCCCCccccccCccc----CCCCCCcHHHHHHHHHHH
Confidence 346789999999999998622278999999999999998 5888754322221211 122346678899999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+.++. .+.+.++++++||+++|++||+|..=
T Consensus 575 l~~g~---------~~~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 575 MAAGE---------PDSEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred HHcCC---------CChHHHHHHHHHHHHcCCCCCCCCCc
Confidence 98753 25689999999999999999999763
No 19
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.33 E-value=9.7e-12 Score=101.43 Aligned_cols=66 Identities=14% Similarity=-0.009 Sum_probs=48.2
Q ss_pred CCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 48 QGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 48 ~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
.|+|.+. +.+++|.+.......+++++||+||++|+.+.. ...+.+.++|+||.++||++|||++-
T Consensus 214 ~~~W~~~---~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~---------~~~~~~~~~v~WL~~~q~~~Ggf~sT 279 (292)
T cd02897 214 TKHWSRP---PPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG---------EDLAEALPIVKWLAKQRNSLGGFSST 279 (292)
T ss_pred CCCCCcC---CCcccccccCCCCCcchHHHHHHHHHHHHHcCC---------ccHhHHHHHHHHHHHcCCCCCCcccH
Confidence 3455543 223444444444446799999999999998741 14588999999999999999999864
No 20
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.27 E-value=7.6e-13 Score=92.68 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHH
Q 031897 31 LMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVN 110 (151)
Q Consensus 31 i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~ 110 (151)
|+++++||++.|.+ +| +|.++.. +++..|+.++.+|..+.. +...++|+||++
T Consensus 1 i~~~~~~l~~~Q~~---dG------------~W~~~~~----~~~~~t~~~~~al~~~~~--------~~~~~ai~ka~~ 53 (109)
T PF13243_consen 1 IKRAAEWLLSQQNP---DG------------SWGYNWG----SDVFVTAALILALAAAGD--------AAVDEAIKKAID 53 (109)
T ss_dssp -----------------------------------------------------------T--------S-SSBSSHHHHH
T ss_pred Cccccccccccccc---cc------------ccccccc----ccccccccccccccccCC--------CCcHHHHHHHHH
Confidence 68999999999998 44 4544421 467789999999988742 346788999999
Q ss_pred HHHhcccCCCCcccc
Q 031897 111 CILSLQSETGGVPAW 125 (151)
Q Consensus 111 ~Ll~~Qn~dGGW~~~ 125 (151)
||++.|++||||+..
T Consensus 54 ~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 54 WLLSHQNPDGGWGYS 68 (109)
T ss_dssp HHHH---TTS--S-T
T ss_pred HHHHhcCCCCCCCCc
Confidence 999999999999976
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.25 E-value=5.2e-11 Score=93.51 Aligned_cols=100 Identities=23% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTD-EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~-~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+.+|.|++++++|...+... ...+.++|+++||+++|.+ +|+|....+...+ .....++++.|+.+|.
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~---dG~~~~~~~~~~~-------~~~~~~~~~~t~~al~ 148 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNE---DGGFREDGPGNHR-------IGGDESDVRLTAYALI 148 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCC---CCCeeeecCCCCc-------ccCCCCcccHHHHHHH
Confidence 367999999999999988541 2367899999999999998 5666533221111 1123578899999999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
+|..++.. ...+.++++++||.+.|++||||
T Consensus 149 aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 149 ALALLGKL--------DPDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred HHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCc
Confidence 99988632 12678999999999999999999
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.23 E-value=2.1e-11 Score=85.36 Aligned_cols=66 Identities=30% Similarity=0.242 Sum_probs=48.2
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHh
Q 031897 35 HDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS 114 (151)
Q Consensus 35 ~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~ 114 (151)
++||+++|++ + |+|++. ...|++.+|+.||++|..++.. .+.++++ |++||++
T Consensus 1 v~~L~~~Q~~---d------------Ggw~~~---~~~~~~~~T~~al~aL~~~g~~--------~~~~~~~-~~~~L~~ 53 (113)
T PF13249_consen 1 VDWLLSRQNP---D------------GGWGGF---GGPSDVWDTAFALLALAALGEE--------PDRDRAA-AVEWLLS 53 (113)
T ss_dssp HHHHHHHB-T---T------------SSBBSS---TS-BEHHHHHHHHHHHHHHTSH--------HCHHHHH-HHHHHHH
T ss_pred CHhhHHHcCC---C------------CCCcCC---CCCCCHHHHHHHHHHHHHhCCc--------ccHHHHH-HHHHHHH
Confidence 6899999998 4 455543 3468899999999999998642 1223333 5999999
Q ss_pred cccCCCCccccCC
Q 031897 115 LQSETGGVPAWEP 127 (151)
Q Consensus 115 ~Qn~dGGW~~~~~ 127 (151)
+|++||||..+..
T Consensus 54 ~q~~dGg~~~~~~ 66 (113)
T PF13249_consen 54 QQNPDGGWGSNPD 66 (113)
T ss_dssp HB-TTSGBBSSTT
T ss_pred hCCCCCCccCCCC
Confidence 9999999999764
No 23
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.21 E-value=3.1e-11 Score=107.77 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
-++.|.|++.+|+++|........++||++||++.|.+ +|+|+++|-.++.....-+-. .-+.++.|++||++|.
T Consensus 616 FtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~---~GGWgEs~lscp~~~Yi~~~g--n~s~vv~T~wAlm~Li 690 (760)
T KOG0497|consen 616 FTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNP---DGGWGESYLSCPEKRYIPLEG--NKSNVVQTAWALMALI 690 (760)
T ss_pred HHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcc---cCCCccccccCcccccccccc--ccccchhHHHHHHHHH
Confidence 36789999999999999877689999999999999998 699999988777655332211 1357899999999999
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEP 127 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~ 127 (151)
.+++.. ++.-.+.||++.|+..|.++|-|+..+.
T Consensus 691 ~~~q~~-------rd~~P~hr~ak~linsQ~~nGdfpqq~i 724 (760)
T KOG0497|consen 691 MAGQAE-------RDPLPLHRAAKVLINSQLENGDFPQQEI 724 (760)
T ss_pred hcCCcc-------cccchHHHHHHHHHhcccccCCcchhHH
Confidence 987532 3445899999999999999999998864
No 24
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.04 E-value=1.4e-09 Score=89.30 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCC---CccccccCCCCCcccccchH
Q 031897 5 GSQTWDCALAIQALLACNLT--DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHIS---KGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~--~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~Ta 79 (151)
.+.+|-|++++.+|..+... .+ ...|+|+++||+++|.+ +|+|.+..+-.. .|++. ...++++.||
T Consensus 78 ~~s~wlTA~v~~~l~~a~~~~~v~-~~~l~~a~~wL~~~Q~~---dG~f~e~~~~~~~~m~gg~~-----~~~~~~~lTA 148 (297)
T cd02896 78 PSSTWLTAFVVKVFSLARKYIPVD-QNVICGSVNWLISNQKP---DGSFQEPSPVIHREMTGGVE-----GSEGDVSLTA 148 (297)
T ss_pred CcchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCC---CCeeCCCCCccChhccCCcc-----ccCCCccchH
Confidence 67899999999999887642 23 67899999999999997 689986543222 23332 1136789999
Q ss_pred HHHHHHHHhcc
Q 031897 80 EALLCCLHFSM 90 (151)
Q Consensus 80 ~al~aL~~~~~ 90 (151)
++|.+|+....
T Consensus 149 ~vl~aL~~~~~ 159 (297)
T cd02896 149 FVLIALQEARS 159 (297)
T ss_pred HHHHHHHhhhc
Confidence 99999999754
No 25
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.97 E-value=4.8e-10 Score=78.35 Aligned_cols=85 Identities=28% Similarity=0.321 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+.+-.|++++.+|...+.. .+.+.|+||++||+++|.+ +| +|++. ......+|+.++.+|
T Consensus 24 ~~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~---dG------------~w~~~----~~~~~~~t~~~~~~l 83 (109)
T PF13243_consen 24 SDVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNP---DG------------GWGYS----GGEYVSMTAAAIAAL 83 (109)
T ss_dssp -----------------TS--SSBSSHHHHHHHHH---T---TS--------------S-T----S--HHHHHHHHHHHH
T ss_pred ccccccccccccccccCCC-CcHHHHHHHHHHHHHhcCC---CC------------CCCCc----CCCCHHHHHHHHHHH
Confidence 4567788999999998854 4588999999999999988 44 45543 123355788887777
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccC
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~ 118 (151)
+.... ....++++|+++||++-|.+
T Consensus 84 ~~~~~--------~~~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 84 ALAGV--------YPDDEAVERGLEWILSHQLD 108 (109)
T ss_dssp HHHHT--------T--HHHHHHHHHHHHHH---
T ss_pred HHhCC--------CCCCHHHHHHHHHHHHccCC
Confidence 55532 22789999999999998753
No 26
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.88 E-value=1.3e-08 Score=82.94 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHH-------HhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFL-------KASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L-------~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
.+=.-++...|...+.-. ....+|+.+|| ++.|.. +|+|.. |+ .....+++-.||+
T Consensus 23 ~~p~~~~~~yl~~~~~~~--~~~~~~~~~~l~~g~~~~~~~q~~---dGsf~~---------w~---~~~~~~~~wlTa~ 85 (292)
T cd02897 23 FAPNIYVLDYLKATGQLT--PEIESKALGFLRTGYQRQLTYKHS---DGSYSA---------FG---ESDKSGSTWLTAF 85 (292)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhccCC---CCCeec---------cc---CCCCCcchhhHHH
Confidence 344446666777777322 23444555555 457887 566642 21 0101234457999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCC
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPT 128 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~ 128 (151)
|+++|..+.. +..+++.+|+||++||+++|++||||..+++.
T Consensus 86 v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~ 127 (292)
T cd02897 86 VLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRV 127 (292)
T ss_pred HHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 9999999863 34678999999999999999999999988653
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.80 E-value=1.1e-08 Score=84.19 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=51.9
Q ss_pred cccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccCh
Q 031897 74 VSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNP 139 (151)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~ 139 (151)
|.+.|...|.-|+.+.+. -+.+...+++.||++||+++|+++|||+.|.+.++ .+++++.+
T Consensus 42 DN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITf 102 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITY 102 (290)
T ss_pred cCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Cccccccc
Confidence 667799999999998542 25577899999999999999999999999998776 88998843
No 28
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.75 E-value=4.2e-08 Score=80.60 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
..++.++++..||..+|.+ ...+++++|++.|..+ |+|..++... ...|... ...-.++..||+||++|
T Consensus 187 ~~~Y~~Al~ayALal~~~~-----~~~~a~~~L~~~~~~d---~~~~~~~~~~-~~~~~~~--~~~~~~vE~TAYALLal 255 (297)
T cd02896 187 QRPYALAITAYALALADSP-----LSHAANRKLLSLAKRD---GNGWYWWTID-SPYWPVP--GPSAITVETTAYALLAL 255 (297)
T ss_pred CChHHHHHHHHHHHHcCCh-----hhHHHHHHHHHHhhhC---CCcceeccCc-CccCCCC--CCchhhhHHHHHHHHHH
Confidence 4778999999999999853 6799999999999984 5554332211 1111110 00112688999999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+..+ +.+...++|+||.+.||.+|||.+-
T Consensus 256 l~~~-----------~~~~a~~iv~WL~~qr~~~Ggf~sT 284 (297)
T cd02896 256 LKLG-----------DIEYANPIARWLTEQRNYGGGFGST 284 (297)
T ss_pred HhcC-----------CchhHHHHHHHHHhcCCCCCCeehH
Confidence 9874 2346888999999999999999864
No 29
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.71 E-value=9e-08 Score=77.72 Aligned_cols=94 Identities=19% Similarity=0.036 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLT-DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~-~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.++++.|..|+.+|...|.. -+ ...++++++||.+.|.+ +|+|. .+. .+.+|+-.|-.|+.
T Consensus 74 ~~~~~~T~~al~~l~llg~~~~~-~~~~~~~~~~l~~~q~~---dGgf~------------~~~--~~~~d~~~ty~al~ 135 (286)
T cd02890 74 DPHLASTYAAVLSLAILGDDALS-RIDREKIYKFLSSLQNP---DGSFR------------GDL--GGEVDTRFVYCALS 135 (286)
T ss_pred CccHHHHHHHHHHHHHcCccccc-hhhHHHHHHHHHHhcCC---CCCcc------------cCC--CCCchHHHHHHHHH
Confidence 57899999999999999963 11 23468899999999998 46553 211 12234555777888
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+|..++. . ....+++.++||+++|++||||+.-
T Consensus 136 ~l~ll~~--------~-~~~~~~~~~~~l~~~Q~~dGGf~~~ 168 (286)
T cd02890 136 ILSLLNI--------L-TDIDKEKLIDYILSCQNYDGGFGGV 168 (286)
T ss_pred HHHHhCC--------c-hhhhHHHHHHHHHHhCCCCCCcCCC
Confidence 8887752 1 2567899999999999999999863
No 30
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.71 E-value=9.3e-08 Score=76.72 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 5 GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.+.+|.|++++++|.+++. ..+ .+.|+||++||+++|.+ +|+|.+..+....+. .....++.+.|++++
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~v~-~~~i~ra~~~L~~~q~~---~g~~~~~~~~~~~~~-----~~~~~~~~~~tA~al 146 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYIDVD-ENVLARALGWLVPQQKE---DGSFRELGPVIHREM-----KGGVDDSVSLTAYVL 146 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhccCC---CCCcCCCCCccCHhh-----cCCcCCCcchHHHHH
Confidence 5799999999999997743 223 67899999999999998 577765433322221 122356788999999
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhccc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQS 117 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn 117 (151)
.+|...+. . ..+.+.++++||.+.+.
T Consensus 147 ~~L~~~g~--------~-~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 147 IALAEAGK--------A-CDASIEKALAYLETQLD 172 (282)
T ss_pred HHHHHhcc--------c-chHHHHHHHHHHHHhcc
Confidence 99998753 1 26789999999998765
No 31
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.70 E-value=1.1e-07 Score=76.24 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFY 106 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ 106 (151)
....|++++++|.+.|.+ +|+| ++-... ..++.-.|+.++++|..+.+ .+ .++.+.++
T Consensus 47 ~~~~i~~~~~~l~~~Q~~---dGgf------------~~w~~~-~~~~~~~Ta~~~~~L~~a~~-----~~-~v~~~~i~ 104 (282)
T cd02891 47 ALEYIRKGYQRLLTYQRS---DGSF------------SAWGNS-DSGSTWLTAYVVKFLSQARK-----YI-DVDENVLA 104 (282)
T ss_pred HHHHHHHHHHHHHhhcCC---CCCc------------cccCCC-CCCchHHHHHHHHHHHHHHH-----cC-CCCHHHHH
Confidence 467899999999999998 4554 321111 14566689999999999864 23 57889999
Q ss_pred HHHHHHHhcccCCCCccccCCCC
Q 031897 107 DAVNCILSLQSETGGVPAWEPTG 129 (151)
Q Consensus 107 rav~~Ll~~Qn~dGGW~~~~~~~ 129 (151)
|+++||+..|++||+|..+....
T Consensus 105 ra~~~L~~~q~~~g~~~~~~~~~ 127 (282)
T cd02891 105 RALGWLVPQQKEDGSFRELGPVI 127 (282)
T ss_pred HHHHHHHhccCCCCCcCCCCCcc
Confidence 99999999999999999876543
No 32
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.68 E-value=1.1e-07 Score=77.17 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc-cCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQ-VTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q-~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+.+|-|=+++.+|.-.|.... ...++|+++||+++| .+ +|+| +++ ....+++..|..|+.
T Consensus 24 ~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~---~Ggf------------~~~--~~~~~~~~~T~~al~ 85 (286)
T cd02890 24 ASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNE---DGGF------------GGG--PGQDPHLASTYAAVL 85 (286)
T ss_pred hhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCC---CCCC------------CCC--CCCCccHHHHHHHHH
Confidence 5678999999999999987433 678999999999999 76 4443 332 234678889999999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+|..++.. .......+++++||.+.|++||||..
T Consensus 86 ~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~ 119 (286)
T cd02890 86 SLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRG 119 (286)
T ss_pred HHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCccc
Confidence 99998631 02334467899999999999999965
No 33
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.50 E-value=7e-07 Score=73.06 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++.-|-.|+..|.-.+.-+..++.++++++||++.|.+ +|+|. .+ ..+.+|+--|=.|+.+|
T Consensus 77 ~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~---dGgf~------------~~--~~~e~d~~~ty~a~~~l 139 (287)
T cd02894 77 PHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNE---DGSFS------------GD--KWGEVDTRFSYCAVLCL 139 (287)
T ss_pred chHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCC---CCCee------------cC--CCCCchHHHHHHHHHHH
Confidence 456777788877776543223345689999999999998 46554 22 11223443366666666
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
..+.. .+...++++++||+++|++||||+.
T Consensus 140 ~ll~~---------~~~i~~~~~~~~l~~~q~~dGGF~~ 169 (287)
T cd02894 140 TLLGK---------LDLIDVDKAVDYLLSCYNFDGGFGC 169 (287)
T ss_pred HHhCC---------cchhhHHHHHHHHHHcCCCCCCcCC
Confidence 55532 1234579999999999999999985
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.45 E-value=1.2e-06 Score=72.32 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=64.4
Q ss_pred HHHHHHHHHHc---CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCccccc-chHHHHHHHH
Q 031897 11 CALAIQALLAC---NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSD-CTAEALLCCL 86 (151)
Q Consensus 11 Tala~~AL~~~---G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d-~Ta~al~aL~ 86 (151)
|.-.+.-|+.+ .-.+.|...+.||++||++.|.+ +|+|...++.. ++ |.. + .+=+| .+..+|..|.
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQyp---nGGWPQf~p~~--~~--Y~~--~-ITfND~am~~vl~lL~ 115 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYP---NGGWPQFYPLK--GG--YSD--A-ITYNDNAMVNVLTLLD 115 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCC---CCCcCcccCCc--CC--ccc--c-cccCcHHHHHHHHHHH
Confidence 34444444443 33345899999999999999999 58998766543 22 211 1 11122 3567788887
Q ss_pred HhccCCc--ccc---CCCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 87 HFSMMRP--EIV---GEKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 87 ~~~~~~~--~~~---g~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
.+.+... ..+ .+.....++.|||+||+..|-+.|||
T Consensus 116 ~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 116 DIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 6643111 001 11245779999999999999888866
No 35
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.17 E-value=5.2e-06 Score=66.59 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccC--CC-CCccccccCCCCCcccccchH
Q 031897 5 GSQTWDCALAIQALLACNLT--DEIGPILMKAHDFLKASQVTDNPQGDFRSMFR--HI-SKGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~--~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~--~~-~~GgW~fs~~~~~~pd~d~Ta 79 (151)
.+.+|-|||++..|..+..- -+ ...|.++++||+++|.+ +|.|.+..+ +. -.|+. ..++..||
T Consensus 24 ~~s~WLTAfv~k~f~~a~~~i~vd-~~~i~~a~~wL~~~Q~~---dG~F~e~~~~~~~~~~g~~--------~~~~~lTA 91 (246)
T PF07678_consen 24 PSSTWLTAFVVKVFSQAKKYIFVD-ENVICRAVKWLISQQQP---DGSFEEDGPVIHREMQGGV--------EDDIALTA 91 (246)
T ss_dssp SBBHHHHHHHHHHHHHHTTTS-CE-HHHHHHHHHHHHHHBET---TSEB--SSS-SSGGGSGGG--------THHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHhhcC---CCccccCCCccccccCCCC--------CCCeeehH
Confidence 67899999999999988642 23 67899999999999998 587764321 11 12221 34677899
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
.++.||+........ ..+....++++|++||.+.
T Consensus 92 ~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 92 YVLIALLEAGSLCDS--EKPEYENAINKALNYLERH 125 (246)
T ss_dssp HHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHh
Confidence 999999998632110 1234678999999999865
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.16 E-value=1.8e-05 Score=65.41 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.+++|-+-+++.+|.-.|...+ ....++.++||.++|.+ +|+|. |+ ...++++-.|=.|+..
T Consensus 24 ~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~---~GgF~--------~~------~~~~~h~~~Ty~A~~~ 85 (299)
T cd02893 24 ASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNP---SGGFG--------GG------PGQLPHLATTYAAVNA 85 (299)
T ss_pred cccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCC---CCCCC--------CC------CCCCccHHHHHHHHHH
Confidence 6789999999999998886333 45678999999999987 57664 11 1124566678888888
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
|..++... ....-..++.++||+++|++||||..-
T Consensus 86 L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~ 120 (299)
T cd02893 86 LAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMH 120 (299)
T ss_pred HHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCC
Confidence 88875210 012223455999999999999999875
No 37
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.15 E-value=1.6e-05 Score=65.63 Aligned_cols=94 Identities=20% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEI-GPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~-~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+++.-|=.|++.|.-.|..+.+ .-...+.++||++.|.+ +|+|. .. ..+.+|+--|=.|+.
T Consensus 73 ~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~---dGgf~------------~~--~~~e~D~r~tycava 135 (299)
T cd02893 73 LPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQP---DGSFR------------MH--VGGEVDVRGTYCAIS 135 (299)
T ss_pred CccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCC---CCCee------------CC--CCCCchHhHHHHHHH
Confidence 46788899999999888853211 12245699999999998 45554 22 112223333333443
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.+..+.. .....+++.++||+++|+.|||++.
T Consensus 136 ~~~lL~~---------~~~~~~~~~~~~l~~cQ~~dGGF~~ 167 (299)
T cd02893 136 VASLLNI---------LTDELFEGVAEYILSCQTYEGGFGG 167 (299)
T ss_pred HHHHhCC---------CchhhHHHHHHHHHHcCCCCCCcCC
Confidence 3333321 1445689999999999999999985
No 38
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.15 E-value=2.6e-06 Score=75.03 Aligned_cols=105 Identities=22% Similarity=0.144 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
-++.|++++.+|...|...+|.+.+++++.||..+|.+ +|+|++.+..+...-..+. .-+-.+.|++|+.+++
T Consensus 379 ~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~---~~Gw~e~~~~~~~~~~~~t----~~sl~~~~~wal~~~~ 451 (517)
T COG1657 379 YIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMP---DGGWGEAKEAISDPVYTGT----ESSLLVQTNWALIALL 451 (517)
T ss_pred EEEehhhhhhhhhccCccccchHHHHHHHHHhhhcccc---CCCcccccccccccccccc----cchhhcchhHHHHHHH
Confidence 46789999999999999887899999999999999999 5889877655544433332 2345678999999999
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEP 127 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~ 127 (151)
.+.+ + ..+.++++++.+.+.|.++|.|.--++
T Consensus 452 ~a~~--------~-~~~~i~~~~~~~~~~~~~~g~~~~~~~ 483 (517)
T COG1657 452 TALE--------P-NQEAIKPGINLLVSDQEPDGSWREAER 483 (517)
T ss_pred Hhcc--------c-chhhhcccccccccCcCCCCcccccee
Confidence 9764 2 556699999999999999999975543
No 39
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.14 E-value=1.2e-05 Score=65.83 Aligned_cols=90 Identities=14% Similarity=-0.037 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++.-|=.|+.+|.-.+..+ ...++++++||+++|.. +|+|. .. ...-+|.=-|.+|+.+|
T Consensus 127 ~d~~~ty~a~~~l~ll~~~~--~i~~~~~~~~l~~~q~~---dGGF~------------~~--~~~es~~~~t~cavasL 187 (287)
T cd02894 127 VDTRFSYCAVLCLTLLGKLD--LIDVDKAVDYLLSCYNF---DGGFG------------CR--PGAESHAGQIFCCVGAL 187 (287)
T ss_pred chHHHHHHHHHHHHHhCCcc--hhhHHHHHHHHHHcCCC---CCCcC------------CC--CCCCCchhHHHHHHHHH
Confidence 34444555555555556432 24589999999999988 46654 21 11234555689999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
..++.. +...+++.++||++.|+++|||.
T Consensus 188 ~llg~~---------~~~~~~~~~~~L~~~q~~~GGf~ 216 (287)
T cd02894 188 AILGSL---------DLIDRDRLGWWLCERQLPSGGLN 216 (287)
T ss_pred HHcCcc---------cccCHHHHHHHHHHhCCCCCCcC
Confidence 988642 22348889999999999999996
No 40
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=97.92 E-value=7e-05 Score=62.41 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++--|-.|+++|.-.+.-. .-..+++++||.+.|.+ +|+|. .. ..+-.|+--|=.|+.+|
T Consensus 83 ~h~~~Ty~al~~L~ll~~~~--~id~~~~~~~l~s~Q~~---dGgF~------------~~--~~ge~D~r~ty~a~a~l 143 (316)
T PLN03201 83 PHILYTLSAVQILALFDRLD--LLDADKVASYVAGLQNE---DGSFS------------GD--EWGEIDTRFSYCALCCL 143 (316)
T ss_pred ccHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHhcCC---CCCcc------------CC--CCCCccHHHHHHHHHHH
Confidence 35556777777776654221 22356799999999998 46554 11 11122332255555555
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
..+.. .+...++++++||+++|++||||+.-
T Consensus 144 ~LL~~---------~~~i~~~~~~~~i~scq~~dGGF~~~ 174 (316)
T PLN03201 144 SLLKR---------LDKINVEKAVDYIVSCKNFDGGFGCT 174 (316)
T ss_pred HHhCc---------cchhHHHHHHHHHHHhcCCCCCcCCC
Confidence 55432 12345789999999999999999853
No 41
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=97.90 E-value=7.4e-05 Score=62.27 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
.+|.+=+++.+|.-.|... ....++.++||+++|.+ +|+|... . ...|+.-.|-.|+.+|.
T Consensus 36 r~~~~y~~l~~L~lL~~~~--~~~~~~~i~~l~~cq~~---~GGF~~~-------------~-~~~~h~~~Ty~al~~L~ 96 (316)
T PLN03201 36 RMNGAYWGLTALDLLGKLD--DVDRDEVVSWVMRCQHE---SGGFGGN-------------T-GHDPHILYTLSAVQILA 96 (316)
T ss_pred hHHHHHHHHHHHHHhCCCc--cccHHHHHHHHHHhcCC---CCCcCCC-------------C-CCcccHHHHHHHHHHHH
Confidence 3445655666666666432 23469999999999997 5766410 1 11345566888888888
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.+.. ...-..++.++||.++|++||||..
T Consensus 97 ll~~---------~~~id~~~~~~~l~s~Q~~dGgF~~ 125 (316)
T PLN03201 97 LFDR---------LDLLDADKVASYVAGLQNEDGSFSG 125 (316)
T ss_pred Hhhh---------hhhhhHHHHHHHHHHhcCCCCCccC
Confidence 7642 1223356799999999999999985
No 42
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.89 E-value=8.1e-05 Score=61.77 Aligned_cols=99 Identities=19% Similarity=0.081 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.++++-|=+|+.+|.-.|.+.+ .-..++.++||++.|.+ +|+|.. .+. ...+.+|+--|=.|+.+
T Consensus 89 ~~~l~~ty~Al~~L~lL~~~~~-~idr~~i~~~l~~~q~~---dGgF~~--------~~~---~~~~e~d~r~ty~Av~~ 153 (307)
T cd02895 89 TGNLAMTYFALLSLLILGDDLS-RVDRKAILNFLSKLQLP---DGSFGS--------VLD---SEGGENDMRFCYCAVAI 153 (307)
T ss_pred cccHHHHHHHHHHHHHhCCchh-hhhHHHHHHHHHHhCCC---CCCccC--------CcC---CcCCCccHHHHHHHHHH
Confidence 5788999999999988875322 22468899999999998 576651 110 01223455556667776
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
|..+.... + .....++.++||+++|+.||||+.-
T Consensus 154 l~lL~~~~------~-~~~d~~~li~~l~s~Q~~dGGF~~~ 187 (307)
T cd02895 154 CYMLDDWS------E-EDIDKEKLIDYIKSSQSYDGGFGQG 187 (307)
T ss_pred HHHhCCCc------c-ccccHHHHHHHHHHccCCCCCccCC
Confidence 66664211 0 1234678999999999999999843
No 43
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.80 E-value=0.00019 Score=59.56 Aligned_cols=109 Identities=17% Similarity=0.040 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCC-CCCCCcccccCCCCCccccccCCCCCcccccchHHH
Q 031897 5 GSQTWDCALAIQALLACNLTD--EIGPILMKAHDFLKASQVTD-NPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~--~~~~~i~rA~~~L~~~Q~~~-~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
.+.+|-|=+++.+|.-.|... . +..-++.++||.++|+++ .++|+|.....+..++ .......+++-.|=+|
T Consensus 24 ~~r~~~~yf~l~~L~lL~~~~~~~-~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~----~~~~~~~~~l~~ty~A 98 (307)
T cd02895 24 TNRLTIAFFALSGLDLLGALDSIL-VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPG----TASKYDTGNLAMTYFA 98 (307)
T ss_pred hhhHHHHHHHHHHHHHhCCCcccc-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcccc----ccccCCcccHHHHHHH
Confidence 567888999999998888643 2 344588899999999311 1157765321110000 0111124666678888
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
+.+|..++. +...-..++.++||+++|++||||+...
T Consensus 99 l~~L~lL~~--------~~~~idr~~i~~~l~~~q~~dGgF~~~~ 135 (307)
T cd02895 99 LLSLLILGD--------DLSRVDRKAILNFLSKLQLPDGSFGSVL 135 (307)
T ss_pred HHHHHHhCC--------chhhhhHHHHHHHHHHhCCCCCCccCCc
Confidence 888888752 1122234678999999999999998654
No 44
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.73 E-value=0.00024 Score=56.91 Aligned_cols=103 Identities=20% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
....+..|++..||..+|. ++..+++++-|.+....++..-.|....... ...+.+.. ..-.++-.|+.||++
T Consensus 129 ~~~~Y~lAl~aYAL~la~~----~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~-~~~~~~~~--~~s~~vEtTaYaLLa 201 (246)
T PF07678_consen 129 IQDPYTLALVAYALALAGD----SPQASKLLNKLNSMATTEGGLRYWSSDESSS-SSSSPWSR--GSSLDVETTAYALLA 201 (246)
T ss_dssp TSSHHHHHHHHHHHHHTTT----CHHHHHHHHHHHCHCEETTTTCEE-SSSSSS-SSSSTTT---SHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcc----cchHHHHHHHHHHhhhhccccCcccCCcccc-cccccccc--cchHHHHHHHHHHHH
Confidence 3567888999999999982 4678888999988877752111232111110 11111100 112367789999999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
++... +.+...+.|+||.+.||.+|||++-
T Consensus 202 ~l~~~-----------~~~~~~~iv~WL~~qr~~~Ggf~ST 231 (246)
T PF07678_consen 202 LLKRG-----------DLEEASPIVRWLISQRNSGGGFGST 231 (246)
T ss_dssp HHHHT-----------CHHHHHHHHHHHHHCTTTTSSTSSH
T ss_pred HHhcc-----------cHHHHHHHHHHHHHhcCCCCccCcH
Confidence 99873 5678899999999999999999863
No 45
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.58 E-value=0.00056 Score=59.57 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=62.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIG-PILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~-~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+++.-|=.|+.+|.-.|-.+.++ -...+.++||++.|.+ +|+|.. ...+-+|+..|=.|+.
T Consensus 118 ~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~---dGgF~~--------------~~~gE~D~R~tYcAla 180 (439)
T PLN02710 118 LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDP---SGGFRM--------------HDGGEMDVRACYTAIS 180 (439)
T ss_pred CccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCC---CCCccc--------------CCCCCCCcCCcHHHHH
Confidence 356777888888888887432111 1257899999999997 576641 1112334444545554
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
.+..+.. .+..-+++.++||+++|+.||||+.-
T Consensus 181 il~LL~~---------l~~~~~e~~~~~I~scQ~~dGGF~g~ 213 (439)
T PLN02710 181 VASLLNI---------LDDELVKGVGDYILSCQTYEGGIGGE 213 (439)
T ss_pred HHHHhCc---------CchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 4444432 24456788999999999999999843
No 46
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.56 E-value=8.9e-05 Score=61.25 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhcc
Q 031897 74 VSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELL 137 (151)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~ 137 (151)
|.+.|...|..|+.+... .+.+...+++.||++||+..|-++|||+-|=+.... +-.++
T Consensus 37 DN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~I 95 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDHI 95 (289)
T ss_dssp GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGSE
T ss_pred cChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCce
Confidence 777899999999998642 244567899999999999999999999998654433 44444
No 47
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.56 E-value=0.00047 Score=60.03 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.+.+|-|=+++.+|.-.|.+-+ +...++.++||.+.|.+ +|+|. |+ . ...|+.-.|=.|+.+
T Consensus 69 a~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~---dGGFg--------g~-----p-g~~~hl~~TY~Av~~ 130 (439)
T PLN02710 69 ANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDP---NGGYG--------GG-----P-GQLPHLATTYAAVNT 130 (439)
T ss_pred hhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCC---CcCCC--------CC-----C-CCCccHHHHHHHHHH
Confidence 4678999999999988886433 34568899999999997 56654 11 1 113556668888888
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
|..++... ....-..++.++||+++|++||||..-
T Consensus 131 L~iLg~~~------~l~~Idr~~l~~fl~s~q~~dGgF~~~ 165 (439)
T PLN02710 131 LVTIGGER------ALSSINREKLYTFLLRMKDPSGGFRMH 165 (439)
T ss_pred HHHcCCch------hhcccCHHHHHHHHHHcCCCCCCcccC
Confidence 88775210 011112356799999999999999853
No 48
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.52 E-value=0.00011 Score=60.75 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcC---CCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCccccc-chHHHHHHHH
Q 031897 11 CALAIQALLACN---LTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSD-CTAEALLCCL 86 (151)
Q Consensus 11 Tala~~AL~~~G---~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d-~Ta~al~aL~ 86 (151)
|.-.+.-|+.+- .++.|++.+.|+++||++.|.+ .|+|...|+.. ++ |... ..=.| ....+|.-|.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp---nGGWPQ~yP~~--~~--Y~~~---ITfNDdam~~vl~lL~ 110 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP---NGGWPQFYPLR--GG--YHDH---ITFNDDAMVNVLELLR 110 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T---TS--BSECS----SG--GGGS---EE-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC---CCCCCccCCCC--CC--CCCc---eEEccHHHHHHHHHHH
Confidence 445555555542 2234899999999999999999 58998766642 22 3221 11123 3466677777
Q ss_pred HhccCCcccc--C---CCCCHHHHHHHHHHHHhccc----CCCCcccc
Q 031897 87 HFSMMRPEIV--G---EKMEPERFYDAVNCILSLQS----ETGGVPAW 125 (151)
Q Consensus 87 ~~~~~~~~~~--g---~~~~~~~l~rav~~Ll~~Qn----~dGGW~~~ 125 (151)
.+.+..++.. . +....+++.||++||+.+|- +--+|+..
T Consensus 111 ~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQ 158 (289)
T PF09492_consen 111 DVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQ 158 (289)
T ss_dssp HHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SE
T ss_pred HHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhc
Confidence 7655332100 0 00346799999999999998 33567654
No 49
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.08 E-value=0.00049 Score=40.97 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcccCCCCccccC
Q 031897 105 FYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 105 l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
++++++||++.|++||||+...
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~ 24 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRP 24 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSST
T ss_pred HHHHHHHHHHHCCCCCCCCCCC
Confidence 6789999999999999998764
No 50
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0039 Score=52.82 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
-|..|-.=+++.+|.-.+..-+ +..++++++||.+.|.++ |+++ || +.-+|-.--|=.|+.+
T Consensus 97 ASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe---GGfg--------GG------PGQl~HLA~TYAAVna 158 (423)
T KOG0365|consen 97 ASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE---GGFG--------GG------PGQLPHLAPTYAAVNA 158 (423)
T ss_pred cCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---CCCC--------CC------CccchhhhHHHHHHHH
Confidence 5788988899999988887655 789999999999999995 6654 33 1113333348899999
Q ss_pred HHHhccCCccccCCCCCHHHH--HHHHHHHHhcccCCCCccc-----------cCCCCcchhhhccChhhhhhc
Q 031897 85 CLHFSMMRPEIVGEKMEPERF--YDAVNCILSLQSETGGVPA-----------WEPTGAPSWLELLNPIEFLDK 145 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l--~rav~~Ll~~Qn~dGGW~~-----------~~~~~~~~~l~~~~~~~~f~~ 145 (151)
|..++... .-.+| ++=.+||.++-++||||.. |....-.++||++-+ |.|..
T Consensus 159 L~~~~~e~--------A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~d-eL~eG 223 (423)
T KOG0365|consen 159 LCLCGSED--------AYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMD-ELFEG 223 (423)
T ss_pred HHhcCcHH--------HHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcH-HHHHH
Confidence 99886311 11222 2348999999999999953 333334566766544 55554
No 51
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0066 Score=50.77 Aligned_cols=95 Identities=22% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHH--HHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILM--KAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~--rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.+++=.|=+|++.|+-.+.-.- -..++ +-+.||...|++ +|.|... +| +-.|.+. +.
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~~-~~~idr~~l~~fi~~lk~p---dGsF~~~-------~~-------gevDtr~---~Y 159 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLDV-LSRIDRDSLASFISGLKNP---DGSFRSD-------LE-------GEVDTRF---LY 159 (342)
T ss_pred chhHHHHHHHHHHHHHhccccc-cchhhHHHHHHHHHhccCC---CCceecc-------cC-------CcchHHH---HH
Confidence 5677889999999998863211 22344 688999999998 5765411 11 1223332 33
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
+||..+.- .| ..+.+-.+-+||||+++||=||||+...
T Consensus 160 ~al~ilsl-----lg-~~~~~~~e~~vdyl~kCqnyeGGFg~~p 197 (342)
T COG5029 160 IALSILSL-----LG-DLDKELFEGAVDYLKKCQNYEGGFGLCP 197 (342)
T ss_pred HHHHHHHH-----Hh-hcchhhhHHHHHHHHHhhccCCcccCCC
Confidence 33333221 12 3466778889999999999999999764
No 52
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.74 E-value=0.0041 Score=36.88 Aligned_cols=41 Identities=27% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHh
Q 031897 31 LMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHF 88 (151)
Q Consensus 31 i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 88 (151)
++++++||+++|.+ +|+|. +. ....||.--|.+++.+|..+
T Consensus 3 ~~~~~~~l~~~Q~~---dGGf~--------~~------~~~~~d~~~t~~~~~~L~ll 43 (44)
T PF00432_consen 3 VEKLIRFLLSCQNP---DGGFG--------GR------PGGESDTCYTYCALAALSLL 43 (44)
T ss_dssp HHHHHHHHHHTBBT---TSSBB--------SS------TTSSBBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC---CCCCC--------CC------CCCCCChHHHHHHHHHHHHc
Confidence 78999999999997 57665 11 12257777899999988765
No 53
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.62 E-value=0.013 Score=47.04 Aligned_cols=100 Identities=17% Similarity=-0.004 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccC-------------------------C--CC
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFR-------------------------H--IS 59 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~-------------------------~--~~ 59 (151)
+.=+|=++..+|...+... ....-+|+++-|+..+.-+++++..+ . ..
T Consensus 122 ~Le~ty~~~~~l~~~n~~~-----~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~~~~v~~Fe~~c~~ 196 (274)
T COG1689 122 PLEATYWMMSALNMVNYEY-----LEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPKEEVRHFELCCGD 196 (274)
T ss_pred hHHHHHHHHHHHHHhCcCc-----hHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccchHHHHhHHhcccc
Confidence 3567778888888888543 24445566665555322222332111 1 12
Q ss_pred CccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 60 KGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 60 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
-|||++. ++...|=+..|=.|+..|-.++. +-.+.+.+.||.+.||+||||.
T Consensus 197 ~Ggf~~~-P~syPPYiE~t~ya~r~lelL~~-----------k~~i~~~~rFI~slqN~nGGFR 248 (274)
T COG1689 197 WGGFTEV-PNSYPPYIEPTFYALRGLELLGG-----------KYCISDHIRFIRSLQNQNGGFR 248 (274)
T ss_pred CCCcccC-CCCCCCccchHHHHHhHHHHHcc-----------CcCchHHHHHHHHhhcCCCCee
Confidence 4788764 34445778899999999988863 2457788999999999999995
No 54
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.46 E-value=0.0062 Score=56.67 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
...++|||+ .||+..=-... .|.--.+++||+++|.+ +|+|+.. +. |+. .-..-.|..+|+|
T Consensus 94 S~S~YDTAW--VAmVp~~~g~~-~p~FP~~~~wIl~nQ~~---DGsWG~~------~~--~~~----~D~ll~TLAcvlA 155 (800)
T PLN02592 94 SISAYDTAW--VALVEDINGSG-TPQFPSSLQWIANNQLS---DGSWGDA------YL--FSA----HDRLINTLACVVA 155 (800)
T ss_pred CCcHHHhHH--HhhcccCCCCC-CCCCHHHHHHHHHccCC---CCCCCCC------CC--cch----HHHHHhHHHHHHH
Confidence 456899999 44544311112 46677999999999998 5666511 00 111 1234579999999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|..=. +.+..++||+.+|.+.
T Consensus 156 L~~w~----------~~~~~i~rGl~fi~~n 176 (800)
T PLN02592 156 LKSWN----------LHPEKCEKGMSFFREN 176 (800)
T ss_pred HHHhh----------ccHHHHHHHHHHHHHH
Confidence 97742 3468899999999863
No 55
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.039 Score=45.42 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.+++--|=-|+|-|+-...-+. --..+-..|+...|++ +|++. -..|+-- |+--+-.|+.+
T Consensus 92 d~hll~TlsAvQiL~~ydsi~~--~d~d~v~~yi~gLq~e---dGsF~-------gD~wGEv-------DTRfs~~av~~ 152 (329)
T KOG0366|consen 92 DPHLLYTLSAVQILALYDSINV--LDRDKVASYIKGLQQE---DGSFS-------GDIWGEV-------DTRFSYCAVAC 152 (329)
T ss_pred ChHHHHHHHHHHHHHHHccccc--ccHHHHHHHHHhhcCc---CCccc-------CCccccc-------chhhhHHHHHH
Confidence 5677778888888877652111 1245678999999998 57653 1244421 11123344445
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
|.-+++ .+.-.+++||+|++++-|-||||+.-.
T Consensus 153 L~lLg~---------ld~~nve~aVd~~~~CyN~DGGFG~~p 185 (329)
T KOG0366|consen 153 LALLGK---------LDTINVEKAVDFVLSCYNFDGGFGCRP 185 (329)
T ss_pred HHHHhh---------HHHhhHHHHHHHHHhhcccCCCcCCCC
Confidence 554443 256778999999999999999999753
No 56
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.048 Score=45.49 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCC-CHHHHHHHH
Q 031897 31 LMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKM-EPERFYDAV 109 (151)
Q Consensus 31 i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~-~~~~l~rav 109 (151)
-++++.||+++|.= +|+++ ..+|+ ..|+. .|-.||-+|...++.-++ .+ +...++|-+
T Consensus 176 ~ek~~~yI~~~q~Y---dgGfg-----~~pg~-----EsHgG----~TfCAlAsL~L~~~l~~e----~l~~~~~~erli 234 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRY---DGGFG-----QHPGG-----ESHGG----ATFCALASLALMGKLIPE----ELSNTSKVERLI 234 (347)
T ss_pred HHHHHHHHHHhhcc---ccccc-----cCCCC-----CCCcc----hhHHHHHHHHHHhhhhhh----hhccccCHHHHH
Confidence 37899999999997 56664 11232 12222 377888887776654211 22 223389999
Q ss_pred HHHHhcccCCCCcc
Q 031897 110 NCILSLQSETGGVP 123 (151)
Q Consensus 110 ~~Ll~~Qn~dGGW~ 123 (151)
.|++..|..+||+.
T Consensus 235 rWli~RQ~~sgGfq 248 (347)
T KOG0367|consen 235 RWLIQRQVSSGGFQ 248 (347)
T ss_pred HHHHHHhhccCCcC
Confidence 99999999999985
No 57
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.36 E-value=0.062 Score=48.50 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCccccc-CCCCCccccccCCCCCcccccchHHHHHHHHH
Q 031897 9 WDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMF-RHISKGGWTFSNKDHGWQVSDCTAEALLCCLH 87 (151)
Q Consensus 9 wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~-~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (151)
-|++++++||..+|.. ...++.++||.+.|.+ +|.|...+ .+..+..|.+ ....|.++..|.++..
T Consensus 298 RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~---~G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~l~al~~ 364 (616)
T TIGR01577 298 RDASYIATALDRAGYH----DRVDRFFRWAMQTQSR---DGSWQQRYYLNGRLAPLQW------GLQIDETGSILWAMDQ 364 (616)
T ss_pred ccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCc---CCCcceEEecCCCCCCCCC------CccccchhHHHHHHHH
Confidence 4899999999999985 4689999999999998 57764332 2222221211 2456779998888854
Q ss_pred hccCCccccCCC---CCHHHHHHHHHHHHhcccC
Q 031897 88 FSMMRPEIVGEK---MEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 88 ~~~~~~~~~g~~---~~~~~l~rav~~Ll~~Qn~ 118 (151)
..+.-+ ..+ ..-+.++++++|+.....+
T Consensus 365 y~~~t~---d~~~~~~~~~~v~~a~~fl~~~~~~ 395 (616)
T TIGR01577 365 HYRLTN---DRAFLEEIWESVQKAAQYLILFIDP 395 (616)
T ss_pred HHHHHC---CHHHHHHHHHHHHHHHHHHHHhccC
Confidence 422111 011 1135689999999997644
No 58
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.12 Score=43.47 Aligned_cols=84 Identities=25% Similarity=0.304 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhcc
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSM 90 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~ 90 (151)
+|+.+.+|+. -++ .+....+++||.++|+- +|+|+-. |++ -...+ .|-.||-+|.-+..
T Consensus 160 ~al~ilsllg-~~~---~~~~e~~vdyl~kCqny---eGGFg~~-----p~a----EaHag-----~tFcalaalalL~~ 218 (342)
T COG5029 160 IALSILSLLG-DLD---KELFEGAVDYLKKCQNY---EGGFGLC-----PYA----EAHAG-----YTFCALAALALLGK 218 (342)
T ss_pred HHHHHHHHHh-hcc---hhhhHHHHHHHHHhhcc---CCcccCC-----Cch----hhccc-----hHHHHHHHHHHHhc
Confidence 3445555554 222 35678899999999998 5776522 111 01112 26677777777654
Q ss_pred CCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 91 MRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 91 ~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.. .+++ +++-+.||...|-+.||+.
T Consensus 219 Ld------~ls~--~E~l~~Wl~~RQ~ssgGl~ 243 (342)
T COG5029 219 LD------KLSD--VEKLIRWLAERQLSSGGLN 243 (342)
T ss_pred cc------ccch--HHHHHHHHHHcccccCCcC
Confidence 32 2232 8889999999999999885
No 59
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=94.83 E-value=0.17 Score=42.62 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHHHcC---CC-CC----ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCccccc
Q 031897 5 GSQTWDCALAIQALLACN---LT-DE----IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSD 76 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G---~~-~~----~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d 76 (151)
...|..+|.|++||.-.- .. ++ ++..|++.++.|+++|.+ +|-++ ++-
T Consensus 183 ~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~---~G~~G---------------------Niy 238 (326)
T PF01122_consen 183 QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKP---NGLFG---------------------NIY 238 (326)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-T---TS-BS---------------------STT
T ss_pred CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCC---CCccc---------------------chh
Confidence 345778899999997652 22 22 455666677777778876 45432 112
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.|+.||+||......+. ...-...++.+.|+... ++|.|..
T Consensus 239 STglAmQAL~~~~~~~~------~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 239 STGLAMQALSVSPSPPS------ESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp THHHHHHHHTT-SS-SS------HHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred hHHHHHHHHhcCCCCCc------chhhHHHHHHHHHHHHh-hcCCCCC
Confidence 39999999998754210 01357889999999854 6898864
No 60
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=94.10 E-value=0.28 Score=44.95 Aligned_cols=88 Identities=19% Similarity=0.148 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccC-CCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFR-HISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~-~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
+-|.++++.||..+|.. ...++.++||.+.|.+ +|.|...|. +..+ .|. . --.|.||+.|.++.
T Consensus 297 ~RD~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~---~G~~lq~y~vdG~~-~~~---~----iQlD~~g~~i~~~~ 361 (648)
T TIGR01535 297 PRDLYQVANAFLAAGDV----DSALRSLDYLAKVQQD---NGMFPQNSWVDGKP-YWT---G----IQLDETAFPILLAY 361 (648)
T ss_pred hhhHHHHHHHHHHCCCH----HHHHHHHHHHHHHhcc---CCCcCceeccCCCC-CCC---C----ccccHHHHHHHHHH
Confidence 35899999999999975 4589999999999997 466642221 1111 121 1 24789999999887
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
.+.+. +.....+.|+++++||.+.
T Consensus 362 ~l~~~-----~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 362 RLHRY-----DHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred HHHHc-----CcHHHHHHHHHHHHHHHHc
Confidence 77542 2223346799999999985
No 61
>PLN02279 ent-kaur-16-ene synthase
Probab=93.97 E-value=0.064 Score=50.03 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCC---cccccchHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHG---WQVSDCTAEA 81 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~---~pd~d~Ta~a 81 (151)
...++|||++.+-=.- + ... .|.--.+++||+++|.+ +|+|+ -.. .+. .-.+-.|..+
T Consensus 52 s~s~YDTAWvamv~~~-~-~~~-~p~Fp~~~~wil~nQ~~---dGsWg------------~~~-~~~~~~~D~ll~TlAc 112 (784)
T PLN02279 52 SVSSYDTAWVAMVPSP-N-SQQ-APLFPECVKWLLENQLE---DGSWG------------LPH-DHPLLVKDALSSTLAS 112 (784)
T ss_pred CCchhhhHHHHhcccC-C-CCC-CCCChHHHHHHHhcCCC---CCCCC------------CCC-CCcchhHHhhHHHHHH
Confidence 4568999997543332 2 222 46778899999999998 56654 211 111 1124478999
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHh
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS 114 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~ 114 (151)
|+||..=. +.+..+++++.+|.+
T Consensus 113 vlAL~~w~----------~~~~~~~~gl~fi~~ 135 (784)
T PLN02279 113 ILALKKWG----------VGEEQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHh----------cCcccchhhHHHHHH
Confidence 99988743 234456777766663
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=93.86 E-value=0.092 Score=44.26 Aligned_cols=91 Identities=24% Similarity=0.211 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+.-+.=+|+++||+-.+... ....+.+++...+.. +. .|+ .-.+|.+|+|++||
T Consensus 143 TnyYq~sL~vLALCv~~~~~----~~~~v~kL~~~~~~~------~~-------~~~---------~~sVDT~AmA~LAL 196 (326)
T PF01122_consen 143 TNYYQYSLGVLALCVHNKRV----SLSVVAKLLKAENHN------FY-------HGS---------QFSVDTGAMAVLAL 196 (326)
T ss_dssp SGHHHHHHHHHHHHHTTHHH----HHHHHHHHHHHHHSS------TS-------S-S---------TCHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHccCCCc----CHHHHHHHHHHHHhh------cc-------cCC---------CCCccHHHHHHHHH
Confidence 34478899999999998532 234444455443332 00 011 12578899999999
Q ss_pred HHhccCCccccCC---CCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 86 LHFSMMRPEIVGE---KMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 86 ~~~~~~~~~~~g~---~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.=+.+... .|. .....+|++.++.|++.|.+||-++-
T Consensus 197 tCv~~~~~--~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN 236 (326)
T PF01122_consen 197 TCVKNSNP--NGPELRRRIQQAIRSLVEKILSQQKPNGLFGN 236 (326)
T ss_dssp HHHHTTTS--TTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS
T ss_pred HHHhccCc--CcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 88865332 110 12345788888889999999999873
No 63
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.33 Score=40.07 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCc
Q 031897 14 AIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRP 93 (151)
Q Consensus 14 a~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~ 93 (151)
.+.||.-.|..+ +-.-++-+.|++++|+. +|+++-+ +| .-|-.-.|-.|++-|..+...
T Consensus 53 g~tal~ll~~le--~~~~eeiv~~v~~C~~~---~GGfa~~-----~G---------hd~hll~TlsAvQiL~~ydsi-- 111 (329)
T KOG0366|consen 53 GLTALDLLGQLE--RMSREEIVSFVLSCQHE---DGGFAGC-----PG---------HDPHLLYTLSAVQILALYDSI-- 111 (329)
T ss_pred hhhHHHHhcccc--hhhHHHHHHHHHheecC---CCCcCCC-----CC---------CChHHHHHHHHHHHHHHHccc--
Confidence 344555445432 22357889999999996 5766511 11 123344588888888776432
Q ss_pred cccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 94 EIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 94 ~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
+.--..+-+.|+...||+||+|.
T Consensus 112 -------~~~d~d~v~~yi~gLq~edGsF~ 134 (329)
T KOG0366|consen 112 -------NVLDRDKVASYIKGLQQEDGSFS 134 (329)
T ss_pred -------ccccHHHHHHHHHhhcCcCCccc
Confidence 22223446899999999999863
No 64
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=93.00 E-value=0.27 Score=40.99 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCC-CCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 5 GSQTWDCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQ-GDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~-G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
.-++|.+++.|.+|+.+.. .+++....+++++||.+.-... + |+|...... .|. ... ..++..+-+.
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~--~~Gg~~~~~~~--~g~----~~~-~~~~l~~~a~ 119 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDP--DHGGWYFALDQ--DGR----PVD-ATKDLYSHAF 119 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCC--CCCCEEEEEcC--CCC----Ccc-cccchHHHHH
Confidence 4578999999999997642 3456778889999999865542 3 666544320 121 001 1235677899
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCc
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ-SETGGV 122 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q-n~dGGW 122 (151)
+|.||..+.+.- |.+...+..++.+++|.... .++|++
T Consensus 120 ~l~ala~~~~at----~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 120 ALLAAAQAAKVG----GDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999987642 34445566777777777665 345665
No 65
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.21 E-value=0.2 Score=40.30 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccc-cchHHHHHHHHHhccCCccccCCCCCHHHHHHH
Q 031897 30 ILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVS-DCTAEALLCCLHFSMMRPEIVGEKMEPERFYDA 108 (151)
Q Consensus 30 ~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~-d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ra 108 (151)
.+.|-++||..+|+.+ ||+.|-. .-||+ .+|=.|+.-+..++. +.++.++.
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~~---~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFVS---QLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEec---cCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4788899999999973 5566532 24665 889999999988764 34668899
Q ss_pred HHHHHh-cccCCCCccc
Q 031897 109 VNCILS-LQSETGGVPA 124 (151)
Q Consensus 109 v~~Ll~-~Qn~dGGW~~ 124 (151)
|+||.+ ||..-+|+..
T Consensus 59 iefL~d~~qt~~~~~a~ 75 (274)
T COG1689 59 IEFLYDQMQTAGVGVAM 75 (274)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 999997 7888888753
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=90.53 E-value=0.13 Score=48.08 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=29.1
Q ss_pred ccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 73 QVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
|.+-+||| .||..- .. |. ..+..-.+++||+..|.+||||+.-
T Consensus 95 ~S~YDTAW--VAmVp~--~~----g~--~~p~FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 95 ISAYDTAW--VALVED--IN----GS--GTPQFPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred CcHHHhHH--Hhhccc--CC----CC--CCCCCHHHHHHHHHccCCCCCCCCC
Confidence 34458999 344332 11 21 2356678999999999999999863
No 67
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=0.7 Score=45.91 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCC-CCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDN-PQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~-~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+.++.-+....||.-++.+.. ...+.+ |++.-..++ ....|.....+..+.+|.+... --+++.|++||.
T Consensus 1095 ~~~~~~~a~~ayAl~l~~sp~a-~~~~~~----l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~---s~~VE~tsYaLL 1166 (1436)
T KOG1366|consen 1095 SMDVYTVAITAYALQLAKSPQA-AKALAK----LKSLARVEGDRRYWWASALKAKNAVKYSPQAR---SIDVETTAYALL 1166 (1436)
T ss_pred ccccchHHHHHHHHHhccCchH-HHHHHh----hhhhhcccCCceeeeeccccccCcccCCCccc---hhhccchHHHHH
Confidence 4677888889999988887543 333444 444333321 0112222222222222221111 137889999999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+++.+... + .+--.+.||.+.||..|||.+-
T Consensus 1167 ~~~~~~~~---------~--~~~pivrWl~~qr~~~GGf~ST 1197 (1436)
T KOG1366|consen 1167 AYLLLAQV---------D--YALPIVRWLVEQRNALGGFSST 1197 (1436)
T ss_pred HHHHhccc---------C--cCchhHhhhhhhhcccCceeeh
Confidence 99988631 1 4455789999999999999764
No 68
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=89.55 E-value=1.4 Score=40.40 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccc----cCCCC--CccccccCCCCCcccccchHHHHHHHHHhccCCccccC
Q 031897 24 TDEIGPILMKAHDFLKASQVTDNPQGDFRSM----FRHIS--KGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVG 97 (151)
Q Consensus 24 ~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~----~~~~~--~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g 97 (151)
+.++.+.++|++-=|+.++..+ +.|..--. .+... ...|+|.+. || =|.+.+++||++++
T Consensus 246 ~~~~~~~~~rS~lvLK~~~d~~-~~GAiIAA~Tts~pe~~g~~~n~dYryv---W~--RD~a~~a~AL~~~G-------- 311 (648)
T TIGR01535 246 NGKGNSLYYVSMMILKAHEDKT-NPGAYIASLSIPWGDGQADDNTGGYHLV---WP--RDLYQVANAFLAAG-------- 311 (648)
T ss_pred CchHHHHHHHHHHHHHHhcCCC-CCCcEEEecCCCCCccCCCCCCCceEEE---eh--hhHHHHHHHHHHCC--------
Confidence 3345778899998888888762 24654211 11111 112444321 32 25788889999886
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 98 EKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 98 ~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
..+..++..+||.+.|.++|.|.
T Consensus 312 ---~~~~a~~~~~~l~~~~~~~G~~l 334 (648)
T TIGR01535 312 ---DVDSALRSLDYLAKVQQDNGMFP 334 (648)
T ss_pred ---CHHHHHHHHHHHHHHhccCCCcC
Confidence 56788999999999999999973
No 69
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=88.42 E-value=2.3 Score=38.53 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
|++.+++||++++ ..+..++.++||.+.|.+||+|.
T Consensus 299 D~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 299 DASYIATALDRAG-----------YHDRVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred cHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCcCCCcc
Confidence 6889999999886 45788999999999999999974
No 70
>PLN02279 ent-kaur-16-ene synthase
Probab=88.37 E-value=0.29 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcccCCCCcccc
Q 031897 102 PERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
.+..-.+++||+..|.+||||+..
T Consensus 72 ~p~Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 72 APLFPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred CCCChHHHHHHHhcCCCCCCCCCC
Confidence 456677999999999999999965
No 71
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=3.7 Score=35.23 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCC
Q 031897 22 NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKME 101 (151)
Q Consensus 22 G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~ 101 (151)
++.. ++.-+-.++||.++|.=| |+++ |=.+.-+..|| |-.||-||..+.+ .+
T Consensus 214 ni~~--deL~eG~~~wi~~CQtyE---GG~G---------G~P~~EAHGGY-----TFCalAalalLn~---------~d 265 (423)
T KOG0365|consen 214 NIPM--DELFEGTLDWIASCQTYE---GGFG---------GEPGVEAHGGY-----TFCALAALALLNE---------MD 265 (423)
T ss_pred CCCc--HHHHHHHHHHHHhccccc---CCcC---------CCccccccCCe-----eHHHHHHHHHHhh---------hh
Confidence 6654 367888999999999984 6653 21222333344 6677777777653 24
Q ss_pred HHHHHHHHHHHHhccc-CCCCcc
Q 031897 102 PERFYDAVNCILSLQS-ETGGVP 123 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn-~dGGW~ 123 (151)
.-.+++=.+|..+.|. -.|||.
T Consensus 266 ~ln~~~Ll~W~~~RQm~~E~GFq 288 (423)
T KOG0365|consen 266 QLNLEKLLEWAVRRQMRFEGGFQ 288 (423)
T ss_pred hhCHHHHHHHHHHhhhhhhcccc
Confidence 4556677899999998 577774
No 72
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=85.97 E-value=2.7 Score=34.76 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHH---cCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 7 QTWDCALAIQALLA---CNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 7 ~~wdTala~~AL~~---~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+|-++-.+.+++. .| .+++.+..+++++||.+.-... ..|+|.... +.|+ .... -.+.-+.+.+|+
T Consensus 19 ~~~~q~R~~~~fa~a~~~g-~~~~l~~A~~~~~fl~~~~~D~-~~Gg~~~~~---~~~~-~~~~----~~~~Y~~af~l~ 88 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRLG-RPEYLELAEHGFDFLRKHFRDP-EYGGWYRSL---DDGG-PLDP----QKDLYDQAFALL 88 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHTTBTT-TTSSBSSEE---ETTE-EEE------EEHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhcccC-CCCCEEEEe---CCCC-CCcc----ccchHHHHHHHH
Confidence 35666666665553 35 3447889999999999877631 135553222 1233 2111 123446789999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhc-ccCC-CCc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSL-QSET-GGV 122 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~-Qn~d-GGW 122 (151)
||..+.. .|.+...+.+++++++|... .+++ ||+
T Consensus 89 ala~~~~-----tg~~~~~~~A~~~~~~l~~~~~d~~~g~~ 124 (346)
T PF07221_consen 89 ALAEARA-----TGDPEALELAEQTLEFLERRFWDPEGGGY 124 (346)
T ss_dssp HHHHHHC-----TT-TTHHHHHHHHHHHHHHHTEETTTTEE
T ss_pred HHHHHHH-----hCChhHHHHHHHHHHHHHHHhcccccCcc
Confidence 9988532 35566677788889998776 5665 443
No 73
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=83.67 E-value=2.4 Score=35.00 Aligned_cols=79 Identities=18% Similarity=0.108 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCC-CCcccccchHHHHHHHHH-hccCCccccCCCCCHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKD-HGWQVSDCTAEALLCCLH-FSMMRPEIVGEKMEPER 104 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~-~~~pd~d~Ta~al~aL~~-~~~~~~~~~g~~~~~~~ 104 (151)
+...+++.++.|.+.|.. +|.|.... ..+. ..++|++.||.+.-+|+. +.... ...+...++
T Consensus 213 ~~~~~~~~~~~l~~~q~~---~G~w~~~~----------~~~~~~~~~etSatA~~a~~l~~gi~~g~---~d~~~y~~~ 276 (336)
T PF07470_consen 213 LLEIAKKLADALARYQDE---DGLWYQDL----------DDPDPGNYRETSATAMFAYGLLRGIRLGL---LDPEEYRPA 276 (336)
T ss_dssp HHHHHHHHHHHHHTTSTT---TSBEBSBT----------TTTTTTS-BEHHHHHHHHHHHHHHHHTTS---STHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CCCcceec----------CCCCCCCcccHHHHHHHHHHHHHHHHcCC---CccHHHHHH
Confidence 455677777888888875 56554222 1111 247888999988888865 32211 112345678
Q ss_pred HHHHHHHHHhc-ccCCCC
Q 031897 105 FYDAVNCILSL-QSETGG 121 (151)
Q Consensus 105 l~rav~~Ll~~-Qn~dGG 121 (151)
.+++.+.|++. =++||.
T Consensus 277 a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 277 AEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhCccCCCCC
Confidence 99999999999 677776
No 74
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=9.3 Score=32.20 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccCCCCCCCcccc-cCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCC---CCHHHHHH
Q 031897 32 MKAHDFLKASQVTDNPQGDFRSM-FRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEK---MEPERFYD 107 (151)
Q Consensus 32 ~rA~~~L~~~Q~~~~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~---~~~~~l~r 107 (151)
+.-++|+.+.|+...-++.--.+ +++.+.+.-.+++.....| .+|....+|..+.- +|.. +++++
T Consensus 61 ~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~---~lA~Ty~sl~~L~~-----lGddLsrlDrks--- 129 (347)
T KOG0367|consen 61 DDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEP---HLAMTYTSLACLVI-----LGDDLSRLDRKS--- 129 (347)
T ss_pred hHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcch---hHHHHHHHHHHHHH-----HcchHhhhhHHH---
Confidence 34579999999884201111001 3334444444443222223 45555555555421 1222 34444
Q ss_pred HHHHHHhcccCCCCccccCCCCcch
Q 031897 108 AVNCILSLQSETGGVPAWEPTGAPS 132 (151)
Q Consensus 108 av~~Ll~~Qn~dGGW~~~~~~~~~~ 132 (151)
-++++..+|.+||+|-+.......+
T Consensus 130 il~~v~~~Q~~dGsF~~~~~GSe~D 154 (347)
T KOG0367|consen 130 ILRFVSACQRPDGSFVSINVGSESD 154 (347)
T ss_pred HHHHHHHhcCCCCceeecCCCCchh
Confidence 4667789999999998775544443
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=7.5 Score=38.99 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 72 WQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 72 ~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
.+.+.-||.+|+.+..+.+ + ..++...|.+|++||+..|.++|.|-.-
T Consensus 999 ~~stWLtafvlr~f~~a~~-~-----i~id~~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 999 SGSTWLTAFVLRVFSQAKE-Y-----IFIDPNVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred cccHHHHHHHHHHhhhccC-c-----eEecHHHHHHHHHHHHHhhccCceEecc
Confidence 4557789999999998753 2 3467899999999999999999998643
No 76
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=73.79 E-value=18 Score=30.01 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHh
Q 031897 9 WDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHF 88 (151)
Q Consensus 9 wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 88 (151)
-+.+..++.|.+.--++++.+.+++.++++.+.-...+ .|+|.....+. .|. ........| ..++++.+|+.+
T Consensus 242 ~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~-~G~~~~~~~~~-~~~-~~~~~~~~w----~~~E~~~a~~~l 314 (384)
T cd00249 242 FEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPE-RGGLYYSFLDD-GGL-LEDDDKRWW----PQTEALKAALAL 314 (384)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCEEEeeECC-CCC-ccccccccc----HHHHHHHHHHHH
Confidence 34555566665543344467777888888877664321 34444211100 010 001111112 267999999887
Q ss_pred ccCCccccCCCCCHHHHHHHHHHHHhcc--cCCCCccccC
Q 031897 89 SMMRPEIVGEKMEPERFYDAVNCILSLQ--SETGGVPAWE 126 (151)
Q Consensus 89 ~~~~~~~~g~~~~~~~l~rav~~Ll~~Q--n~dGGW~~~~ 126 (151)
.+.. |.+...+..++..+++...- ...|+|-.+-
T Consensus 315 ~~~t----gd~~~~~~~~~~~~~~~~~~~d~~~G~w~~~~ 350 (384)
T cd00249 315 AGIT----GDERYWQWYQRAWAYLWRHFIDPEYGLWFGYL 350 (384)
T ss_pred HHhc----CCHHHHHHHHHHHHHHHHhcCCCCCCcceeeE
Confidence 6532 33434455666666666422 2379997653
No 77
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=69.35 E-value=11 Score=32.21 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCChhHHHHHH--HHHHHcCCCCCccHHHHH-HHHHHHhhccCCCCC-CCcccccCCCCCccccccCCC--CCcccccch
Q 031897 5 GSQTWDCALAI--QALLACNLTDEIGPILMK-AHDFLKASQVTDNPQ-GDFRSMFRHISKGGWTFSNKD--HGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~--~AL~~~G~~~~~~~~i~r-A~~~L~~~Q~~~~~~-G~~~~~~~~~~~GgW~fs~~~--~~~pd~d~T 78 (151)
.-|+|+=+|-+ .-++..|..-.-.+-+.. -.+|....+...|+. |-|+.-+.....+.|.-+... ..|.. .-
T Consensus 129 p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaR--g~ 206 (357)
T COG4225 129 PHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWAR--GN 206 (357)
T ss_pred hhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeec--cc
Confidence 34677665533 333444432110122222 234555544444334 766643444444444422111 11211 23
Q ss_pred HHHHHHHHHhcc-CCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc-CCCCcchhhhccChhhhh
Q 031897 79 AEALLCCLHFSM-MRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW-EPTGAPSWLELLNPIEFL 143 (151)
Q Consensus 79 a~al~aL~~~~~-~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~-~~~~~~~~l~~~~~~~~f 143 (151)
+|+.+||..+-+ .|-++-++..-...+++-|+-|++.|..+|=|-+. +..++.++||-= .++.|
T Consensus 207 gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsS-aSa~f 272 (357)
T COG4225 207 GWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESS-ASAGF 272 (357)
T ss_pred chHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhh-HHHHH
Confidence 577777766433 22222233345678999999999999999999877 444788888743 55544
No 78
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.15 E-value=17 Score=33.58 Aligned_cols=98 Identities=17% Similarity=0.063 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCC---CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHH
Q 031897 11 CALAIQALLACNLT---DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLH 87 (151)
Q Consensus 11 Tala~~AL~~~G~~---~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (151)
-++++.||+.+|.. +++-...+++.+|+++....+ .....+++...... .-..|=|..+.||+.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~----rl~~~~~~G~a~~~---------g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD----RLLRRYRGGEAAVA---------GLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc----chheeeecCccccc---------ccchhHHHHHHHHHH
Confidence 47889999998742 336678899999999988862 22222222111111 234466777777777
Q ss_pred hccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 88 FSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 88 ~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+.+.-. +..--..+++.+-+-+...+.+.|||=.
T Consensus 480 lye~t~---d~~yL~~A~~L~~~~i~~f~d~~gGf~~ 513 (667)
T COG1331 480 LYEATG---DLAYLEKAIELADEAIADFWDDEGGFYD 513 (667)
T ss_pred HHHhhC---cHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 765321 1112244555555666777888888543
No 79
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=68.05 E-value=8.2 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCC-cccccchHHHHHHHHHhcc
Q 031897 31 LMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHG-WQVSDCTAEALLCCLHFSM 90 (151)
Q Consensus 31 i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~-~pd~d~Ta~al~aL~~~~~ 90 (151)
|+++++|.++++.. - +||..... .+..||+..+..||..++-
T Consensus 2 ie~~I~w~~~r~~~---v---------------~YSm~~R~G~~s~DCSs~V~~ALr~aG~ 44 (145)
T PF05382_consen 2 IEKAINWMEARKGK---V---------------TYSMDSRNGPDSYDCSSFVYQALRAAGF 44 (145)
T ss_pred HHHHHHHHHHhcCC---c---------------eEhhhhcCCCCcCchHHHHHHHHHHcCC
Confidence 78999999876643 1 22222221 2236999999999998764
No 80
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=66.40 E-value=31 Score=29.92 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcc-----cccchH
Q 031897 8 TWDCALAIQALLAC---NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQ-----VSDCTA 79 (151)
Q Consensus 8 ~wdTala~~AL~~~---G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~p-----d~d~Ta 79 (151)
+|-++--+..++.+ |.++++...+.-+++|+.+.-... + |||.|-....+-| |.-+-+
T Consensus 54 ~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~--~------------gg~~~~~~~dg~~~Dat~d~Y~ha 119 (388)
T COG2942 54 LRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDP--E------------GGWYFALDNDGGPVDATKDLYGHA 119 (388)
T ss_pred eeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCC--C------------CCeEEEecCCCCcccccHhHHHHH
Confidence 34445445555444 334557889999999998755542 3 4455443333222 233459
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccC-CCCccccCCCCcchhhhccCh
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE-TGGVPAWEPTGAPSWLELLNP 139 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~-dGGW~~~~~~~~~~~l~~~~~ 139 (151)
.||+|+..+.. +|.+...+...++.+.|...=-. +=+-.-|+.+++......=||
T Consensus 120 FallA~A~~a~-----a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp 175 (388)
T COG2942 120 FALLAAAHAAT-----AGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNP 175 (388)
T ss_pred HHHHHHHHHHh-----cCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCc
Confidence 99999998764 35566667778887777644211 113334555555555444444
No 81
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=65.18 E-value=7.6 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCc
Q 031897 102 PERFYDAVNCILSLQSETGGVPAWEPTGA 130 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~ 130 (151)
.+-|+.||+||++..+..-||-.|+.+.+
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~dk~g 83 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFEDKQG 83 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCCCCC
Confidence 57899999999999999999999986543
No 82
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=64.54 E-value=9.4 Score=38.78 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=44.2
Q ss_pred ccccchHHHHHHHHHhccCCccc-cCCCCCHHHHHHHHHHHHhcccCCCCccccCC-CCcchhh
Q 031897 73 QVSDCTAEALLCCLHFSMMRPEI-VGEKMEPERFYDAVNCILSLQSETGGVPAWEP-TGAPSWL 134 (151)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~-~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~-~~~~~~l 134 (151)
...-.|+..++.|+.+.+...+. +...--+.++..++.=|+++|+.+|+|+.|.. .....||
T Consensus 1168 gc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~l 1231 (1621)
T COG2373 1168 GCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWL 1231 (1621)
T ss_pred cchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhh
Confidence 34556888888888876543322 23334467999999999999999999999987 4444444
No 83
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=63.45 E-value=84 Score=25.92 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEP 127 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~ 127 (151)
.+-.+.+|+.+.+. .+.+...+.++++++|+.+.+.++|.|+....
T Consensus 167 ~aGI~~~L~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~ 212 (343)
T cd04794 167 LAGILYILLQTPLF----LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLG 212 (343)
T ss_pred HHHHHHHHHhhhhh----cCCccHHHHHHHHHHHHHHhhccCCCCCCccC
Confidence 34445556555431 13455678999999999999999999986643
No 84
>PLN03009 cellulase
Probab=63.15 E-value=81 Score=28.17 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCC------CCccHHHHHHHHHHHhhccCCCCCC---Cccccc--------CCCCCccccccCCCCCcc
Q 031897 11 CALAIQALLACNLT------DEIGPILMKAHDFLKASQVTDNPQG---DFRSMF--------RHISKGGWTFSNKDHGWQ 73 (151)
Q Consensus 11 Tala~~AL~~~G~~------~~~~~~i~rA~~~L~~~Q~~~~~~G---~~~~~~--------~~~~~GgW~fs~~~~~~p 73 (151)
-+|+.++|+-+-.. ..|.+.+++++.|...+..-..+.. .|.... .-.-.|||-=.....-|.
T Consensus 7 ~~~~~~~~~~~~~~~f~~~~~~Y~~al~~Sl~Fy~aQRsG~lp~~~~~~Wr~ds~~~Dg~~~~~DlsGGwyDAGD~~Ky~ 86 (495)
T PLN03009 7 LSLVFLFFLILRRPTMESNQHDYSDALSKSILFFEGQRSGYLPNDQRMTWRANSGLSDGWTHNTDLTGGYYDAGDNVKFG 86 (495)
T ss_pred HHHHHHHHHHHhCcccccCchhHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCcCCCCCcccccCCCcceeCCCCceec
Confidence 35566666544332 2488999999999987553221111 232211 012356775221111111
Q ss_pred cccchHHHHHHHHHhccCCcccc---CCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 74 VSDCTAEALLCCLHFSMMRPEIV---GEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~---g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.. .+.++..|+-.....++.. +.+-..+.|+=++|||+.||..+|++=
T Consensus 87 ~p--~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 87 FP--MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred cc--hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 11 2333222222111111111 222234456668999999988777653
No 85
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=60.67 E-value=47 Score=27.43 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccccCC---CCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCC
Q 031897 24 TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRH---ISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKM 100 (151)
Q Consensus 24 ~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~---~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~ 100 (151)
++++.+.++++++|+.+.+.+ .|.|...... ...-+|.+- +.-++.+|+.+.+.. +.+.
T Consensus 183 ~~~~~~~i~~~i~~~~~~~~~---~g~w~~~~~~~~~~~~~~wChG-----------~~Gi~~~l~~~~~~~----~~~~ 244 (343)
T cd04794 183 KPSLAPLIKRSLDYLLSLQFP---SGNFPSSLGNRKRDRLVQWCHG-----------APGIVYLLAKAYLVF----KEEQ 244 (343)
T ss_pred CccHHHHHHHHHHHHHHhhcc---CCCCCCccCCCCCCccccccCC-----------CchHHHHHHHHHHHh----CCHH
Confidence 345788999999999988655 4666533221 111234321 334445555544321 2233
Q ss_pred CHHHHHHHHHHHHh--cccCCCCccccCCCCcchhhh
Q 031897 101 EPERFYDAVNCILS--LQSETGGVPAWEPTGAPSWLE 135 (151)
Q Consensus 101 ~~~~l~rav~~Ll~--~Qn~dGGW~~~~~~~~~~~l~ 135 (151)
..+.++++.+.+.. +.+.+-|+-.-...+..-+|.
T Consensus 245 ~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~ 281 (343)
T cd04794 245 YLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLL 281 (343)
T ss_pred HHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHH
Confidence 45566666665542 333344665555555555553
No 86
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=60.30 E-value=16 Score=30.14 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHHH---HcCCCC--CccHHHHHHHHHHHhhccCCCCCCC
Q 031897 10 DCALAIQALL---ACNLTD--EIGPILMKAHDFLKASQVTDNPQGD 50 (151)
Q Consensus 10 dTala~~AL~---~~G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~ 50 (151)
.||++.-+|+ ..|..+ .|.+.++|+++.|.+.+..+ +|.
T Consensus 251 atA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~--dG~ 294 (336)
T PF07470_consen 251 ATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDP--DGK 294 (336)
T ss_dssp HHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-T--TSS
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCC--CCC
Confidence 3677777774 467652 38899999999999984432 454
No 87
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=60.15 E-value=7 Score=34.31 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcccCCCCccccC-CCCcchhhh
Q 031897 101 EPERFYDAVNCILSLQSETGGVPAWE-PTGAPSWLE 135 (151)
Q Consensus 101 ~~~~l~rav~~Ll~~Qn~dGGW~~~~-~~~~~~~l~ 135 (151)
+..+...|.+||...|++.|||+--. +.-+..|++
T Consensus 378 H~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~ 413 (594)
T KOG3760|consen 378 HSAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLV 413 (594)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccc
Confidence 56688899999999999999998553 333355555
No 88
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=59.76 E-value=8.6 Score=32.95 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCc
Q 031897 99 KMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 99 ~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
+-..+.++=++|||++||.++|++
T Consensus 94 ~dllde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCce
Confidence 334567788999999999996553
No 89
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=57.81 E-value=14 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccC
Q 031897 6 SQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
.++++.+|+++||+++.. .+++...+++++++|.+.-..
T Consensus 78 ~~~Y~~af~l~ala~~~~tg~~~~~~~A~~~~~~l~~~~~d 118 (346)
T PF07221_consen 78 KDLYDQAFALLALAEARATGDPEALELAEQTLEFLERRFWD 118 (346)
T ss_dssp EEHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHHHHHHHTEE
T ss_pred cchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Confidence 467899999999998522 234577888999999886543
No 90
>PLN02567 alpha,alpha-trehalase
Probab=50.79 E-value=1.1e+02 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
-|||-|++++|+.+|+. +.++..++=|...|..
T Consensus 155 yWDSy~i~~GLl~s~~~----~~A~~mi~Nf~~~i~~ 187 (554)
T PLN02567 155 YWDSYWVIRGLLASKMY----ETAKGVVENLLYLVDT 187 (554)
T ss_pred hHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHH
Confidence 59999999999999984 4677777777777766
No 91
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=50.45 E-value=69 Score=27.59 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHHHc---CC--CCCccHHHHHHHHHHHhhccCCCCCCCccc-ccCCCCCcccc-c--cCCC-CCccc
Q 031897 5 GSQTWDCALAIQALLAC---NL--TDEIGPILMKAHDFLKASQVTDNPQGDFRS-MFRHISKGGWT-F--SNKD-HGWQV 74 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~---G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~-~~~~~~~GgW~-f--s~~~-~~~pd 74 (151)
...+||++.-++||.++ |+ .+++..+|.|.+..|.+...- +|.... .|... .|.+. + .... .+| .
T Consensus 30 ~tT~wdiG~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~---~g~lPn~~Y~t~-T~~~~~~~~~p~~~~gw-S 104 (367)
T PF11329_consen 30 STTMWDIGSYLMALVAARELGLISREEFDQRLEKTLATLEKLPLF---RGHLPNKWYNTQ-TGQPVDYGNQPGERIGW-S 104 (367)
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCccc---CCcCccceeecC-cCcccccCCCCCccCCc-c
Confidence 56789999999999887 43 234678899999999987665 343311 22211 11111 0 0111 334 2
Q ss_pred ccchHHHHHHHHHhccCC
Q 031897 75 SDCTAEALLCCLHFSMMR 92 (151)
Q Consensus 75 ~d~Ta~al~aL~~~~~~~ 92 (151)
.-|.+.-|.+|..+.+.+
T Consensus 105 avD~GrLl~~L~il~~~~ 122 (367)
T PF11329_consen 105 AVDIGRLLIALRILKQRY 122 (367)
T ss_pred HhhHHHHHHHHHHHHHHC
Confidence 456788888888887543
No 92
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=48.22 E-value=93 Score=24.95 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=41.9
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHH
Q 031897 24 TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPE 103 (151)
Q Consensus 24 ~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 103 (151)
++++.+.+.+++++|.+..... ..+..+ ......--+| ...++-.+.+|+.+.+.- +.+...+
T Consensus 100 ~~~~l~~a~~~~~~l~~~~~~~---~~~~~~-~~~~~~~~G~---------~hG~aGi~~~L~~l~~~t----~d~~~l~ 162 (321)
T cd04791 100 DPALLEAAAKIAELLAEALERG---DPALLW-PDFDRVDHGL---------LHGWAGIALFLLRLYKAT----GDSRYLE 162 (321)
T ss_pred ChHHHHHHHHHHHHHHHHhhcc---cccccc-ccCCCCCCcc---------ccCcHHHHHHHHHHHHHH----CCHHHHH
Confidence 3446778899999998865442 111111 0000001111 223455555555554321 3333456
Q ss_pred HHHHHHHHHHhccc-CCCCcc
Q 031897 104 RFYDAVNCILSLQS-ETGGVP 123 (151)
Q Consensus 104 ~l~rav~~Ll~~Qn-~dGGW~ 123 (151)
..+++++++++... .++||.
T Consensus 163 ~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 163 LAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred HHHHHHHHHHHhhccCCCCce
Confidence 67777888776543 457774
No 93
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=47.74 E-value=52 Score=29.21 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccccCC---CCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCC
Q 031897 24 TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRH---ISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKM 100 (151)
Q Consensus 24 ~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~---~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~ 100 (151)
+++....+.+.++.|.+.|.+ +|........ .....|+= . ..+.-+-.-.|.||+...+ ..|.+.
T Consensus 78 D~~l~~~~d~~V~~l~~~Q~~---dGYl~~~~~~~~~~~~~~w~~--~---~he~Y~~~~ll~gl~~~y~----~tG~~~ 145 (520)
T PF07944_consen 78 DPELKAKADEIVDELAAAQQP---DGYLGTYPEERNFNPDDRWAP--D---MHELYCLGKLLEGLIDYYE----ATGNER 145 (520)
T ss_pred CHHHHHHHHHHHHHHHHhccC---CceecccccccccccccCCCC--C---ccceehHhHHHHHHHHHHH----HHCcHH
Confidence 344678899999999999997 4533322211 12334442 0 1124466778888887654 236666
Q ss_pred CHHHHHHHHHHH
Q 031897 101 EPERFYDAVNCI 112 (151)
Q Consensus 101 ~~~~l~rav~~L 112 (151)
--+.+.|..+|+
T Consensus 146 ~L~v~~k~ad~~ 157 (520)
T PF07944_consen 146 ALDVATKLADWV 157 (520)
T ss_pred HHHHHHHHHHHH
Confidence 677888999999
No 94
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=44.53 E-value=36 Score=18.85 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=5.0
Q ss_pred HHHHHHHH
Q 031897 31 LMKAHDFL 38 (151)
Q Consensus 31 i~rA~~~L 38 (151)
+.+|++||
T Consensus 30 ve~A~~~L 37 (37)
T PF00627_consen 30 VERAVDWL 37 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 56666665
No 95
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=43.01 E-value=60 Score=28.81 Aligned_cols=98 Identities=10% Similarity=-0.034 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHhhccCC-CCCCCcc--cccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHH
Q 031897 27 IGPILMKAHDFLKASQVTD-NPQGDFR--SMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPE 103 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~-~~~G~~~--~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 103 (151)
+.+..+...++|+..|... ...+... ........|+|--......+.+. +.+.=|.|+..+... .+.+.-.+
T Consensus 9 ~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~-~~g~wl~a~a~~~~~----~~D~~l~~ 83 (520)
T PF07944_consen 9 WKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGH-DVGKWLEAAAYAYAY----TGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCC-cHHHHHHHHHHHHHH----CCCHHHHH
Confidence 3566777888888755431 0011000 00112245777611112222221 355666666554321 13455677
Q ss_pred HHHHHHHHHHhcccCCCCccccCCCC
Q 031897 104 RFYDAVNCILSLQSETGGVPAWEPTG 129 (151)
Q Consensus 104 ~l~rav~~Ll~~Qn~dGGW~~~~~~~ 129 (151)
.+++-|+.|+..|.+||=.++|....
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~ 109 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEER 109 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccc
Confidence 89999999999999999888876544
No 96
>PLN02909 Endoglucanase
Probab=40.67 E-value=1.1e+02 Score=27.35 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=48.2
Q ss_pred CccHHHHHHHHHHHhhccCC---CCCCCcccc--cCC------CCCccccccCCCC--CcccccchHHHHHHH----HHh
Q 031897 26 EIGPILMKAHDFLKASQVTD---NPQGDFRSM--FRH------ISKGGWTFSNKDH--GWQVSDCTAEALLCC----LHF 88 (151)
Q Consensus 26 ~~~~~i~rA~~~L~~~Q~~~---~~~G~~~~~--~~~------~~~GgW~fs~~~~--~~pd~d~Ta~al~aL----~~~ 88 (151)
+|.+.+++++.|...+..-. +.+..|... ..+ .-.|||-=....- +.| .|.++..| ...
T Consensus 34 nY~~aL~~sl~Fy~aQRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwyDAGD~~Kf~~p----~a~s~~~L~w~~~~y 109 (486)
T PLN02909 34 NYKDALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLP----MAFTVTTLAWSTLAY 109 (486)
T ss_pred cHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccCCccccCCCCCceeCCCCceeCCc----hHHHHHHHHHHHHHh
Confidence 58999999999998755432 112224221 011 2367775221111 122 23333222 222
Q ss_pred ccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 89 SMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 89 ~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.....+.-+.+-..+.++=++|||+.||.++|++=
T Consensus 110 ~~~~~~~g~~~d~ldeikw~~D~llk~~~~~~~~y 144 (486)
T PLN02909 110 EKELRATGELENVRAAIRWGTDYFLKAASRKNRLY 144 (486)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 21111111233345677889999999999887653
No 97
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=39.96 E-value=51 Score=18.01 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHH
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLK 39 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~ 39 (151)
..+..||..++- -+.+|++||.
T Consensus 16 ~~~~~AL~~~~~------d~~~A~~~L~ 37 (38)
T cd00194 16 EEARKALRATNN------NVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHhCC------CHHHHHHHHh
Confidence 344555555543 1667777775
No 98
>PLN00119 endoglucanase
Probab=38.96 E-value=1.6e+02 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHc---CC-CCCccHHHHHHHHHHHhhccC
Q 031897 8 TWDCALAIQALLAC---NL-TDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 8 ~wdTala~~AL~~~---G~-~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
+|.-++++.-|... |. ..+|.+.+.+++.|...+..-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG 49 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSG 49 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCC
Confidence 57767666655432 43 456999999999999875543
No 99
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=36.81 E-value=1.1e+02 Score=31.41 Aligned_cols=72 Identities=21% Similarity=0.118 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFY 106 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ 106 (151)
.+..|+.|+.=|.+.|.. +|.|+ =|+=. +.+|-=.|++++.+|+.+.+ .|..++.+.+.
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~---~G~F~---------~W~~~----~~~d~~ltaYa~~Fl~~A~e-----~g~~vp~~~~~ 1255 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGS---NGAFG---------LWGGN----GSGDPWLTAYAVDFLLRARE-----QGYSVPSDALN 1255 (1621)
T ss_pred HHHHHHHHHHHHHhhhhc---CCcee---------ecCCC----CCcchhhhHHHHHHHhhhhh-----cCcCCCHHHHH
Confidence 456899999999999998 45543 33211 23445579999999999853 47788999999
Q ss_pred HHHH-HHHhcccCC
Q 031897 107 DAVN-CILSLQSET 119 (151)
Q Consensus 107 rav~-~Ll~~Qn~d 119 (151)
++.. ++..+||+-
T Consensus 1256 ~~~~~~~~~l~n~~ 1269 (1621)
T COG2373 1256 QMLERLLEYLQNPG 1269 (1621)
T ss_pred HHHHHHHHHHhCcC
Confidence 9966 556677764
No 100
>PRK03430 hypothetical protein; Validated
Probab=36.51 E-value=37 Score=25.74 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 031897 13 LAIQALLACNLTDEIGPILMKAHDFLKASQ 42 (151)
Q Consensus 13 la~~AL~~~G~~~~~~~~i~rA~~~L~~~Q 42 (151)
--..-|.++|+. +.-|.||++||.+-.
T Consensus 25 ~L~~~L~~aGF~---~~eI~~AL~WLe~L~ 51 (157)
T PRK03430 25 KLEDDLTDAGFH---REDIYNALLWLEKLA 51 (157)
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 345568899997 468999999999854
No 101
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.69 E-value=3e+02 Score=25.26 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=69.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
..+-|.++-.+.+ .|+-+.-++++.+.++=|.+.-..+ .++|..+......|. ...+.|=.-||.|-...+
T Consensus 477 ~~~vDasll~l~~--fg~i~~~D~~~~~t~~~I~~~L~~~--~~gi~RY~~~~~d~~-----~~~~~~w~i~t~Wl~~~~ 547 (612)
T COG3387 477 DDTVDASLLGLVL--FGFIPPDDPRILATVEAIERELLVD--GGGIRRYNNEYDDGL-----GGDNGPWIITTLWLSEYY 547 (612)
T ss_pred cccccHHHhhccc--cCccCCCCHHHHHHHHHHHHHHhhc--CCcEEcCcccccccc-----CCCCCcceeehhHHHHHH
Confidence 6677777654444 7764333788888888887766653 113432221001111 111134457899999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhcc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELL 137 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~ 137 (151)
.++++ .+..++-++||+..++++|=.+.--.....+.+--+
T Consensus 548 ~~~g~-----------~~~a~~ll~~l~~~a~~~gll~EQv~~~~G~~~g~~ 588 (612)
T COG3387 548 LALGR-----------LDEAKKLLEWLLAFASPLGLLPEQVDDGSGEPLGAF 588 (612)
T ss_pred HHccc-----------hHHHHHHHHHHHHhcCCCCCcchhhcCCCCccCCCC
Confidence 88763 345666699999999999999887655555544444
No 102
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=33.38 E-value=2.9e+02 Score=24.05 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=51.4
Q ss_pred CChhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCC-CCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 6 SQTWDCALAIQALLACNLT--DEIGPILMKAHDFLKASQVTDN-PQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~--~~~~~~i~rA~~~L~~~Q~~~~-~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
-++++.+|+++|++.+-.. +.-...+..+.+.|.+.-..++ +-+.+.+.++...+- ...| -=..+
T Consensus 113 ~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl--------~sNp----~MHl~ 180 (388)
T COG2942 113 KDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPL--------GSNP----HMHLL 180 (388)
T ss_pred HhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCcc--------CCCc----chHHH
Confidence 4689999999999875321 2225778888888877444321 122333222211111 1112 23556
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCC
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSET 119 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~d 119 (151)
.|+++..+.. |...-.....+-++-+++.+=..
T Consensus 181 EA~LA~~e~~----~~~~~~~~A~~ia~l~~~rf~d~ 213 (388)
T COG2942 181 EAMLAAYEAT----GEKTWLDRADRIADLIISRFADA 213 (388)
T ss_pred HHHHHHHhcc----CchhHHHHHHHHHHHHHHHhhhc
Confidence 6666665433 33333445555566666655433
No 103
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=32.52 E-value=66 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+++.+..||..++ ..+..++...||.++|+++|-|..
T Consensus 289 D~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~~ 325 (612)
T COG3387 289 DASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLYH 325 (612)
T ss_pred cHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCceee
Confidence 5788888888876 567788999999999999987543
No 104
>PLN02266 endoglucanase
Probab=31.42 E-value=2.1e+02 Score=25.79 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcccCCCCcc
Q 031897 102 PERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.+.|+=+.|||+.||.++|++=
T Consensus 133 Ldelkw~~D~llk~~~~~~~vy 154 (510)
T PLN02266 133 KDAIRWATDYLLKATAHPDTIY 154 (510)
T ss_pred HHHHHHHHHHHHHhccCCCeEE
Confidence 4678889999999998887753
No 105
>PRK10137 alpha-glucosidase; Provisional
Probab=31.01 E-value=2.1e+02 Score=27.31 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC-CC-----CCCcccc-cCCCCCcccccc-CCCCCcccccchH
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTD-NP-----QGDFRSM-FRHISKGGWTFS-NKDHGWQVSDCTA 79 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~-~~-----~G~~~~~-~~~~~~GgW~fs-~~~~~~pd~d~Ta 79 (151)
.||++++..+|+.... +.-+.-++.|.+.|... ++ +|-.... +....+..|+-. ..+.+..-.-.-+
T Consensus 349 ~WDS~~~A~~la~fdp-----elA~~~lr~Lf~~Q~~~~d~~r~~~~G~Iph~vf~~~~p~R~g~~~~~ne~~tqPPL~a 423 (786)
T PRK10137 349 PWDTWKQAYAMAHFNP-----DVAKENIRAVFSWQIQPDDSVRPQDVGFVPDLIAYNLSPERGGDGGNWNERNTKPSLAA 423 (786)
T ss_pred chHHHHHHHHHhhcCH-----HHHHHHHHHHHHhhccccCCCCcCCCCeeeEEeccCCCcccccccccccCCCcCcCHHH
Confidence 5999999999988763 45677888999988432 11 3322211 111223344421 1111111112345
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCC-CCccccC
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSET-GGVPAWE 126 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~d-GGW~~~~ 126 (151)
+++.-+...... ..=...-.+.|.+..+|+.....+| .|..+|.
T Consensus 424 ~av~~vy~~t~d---~~fl~~lyPkL~a~h~Ww~~~RD~dg~Gl~eY~ 468 (786)
T PRK10137 424 WSVMEVYNVTQD---KAWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYG 468 (786)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCCCCceeEee
Confidence 555555443210 0001123568899999999998765 5788774
No 106
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=29.65 E-value=3.7e+02 Score=23.18 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFY 106 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ 106 (151)
+...++.-++=|.+.|.. .|-|..--.+.+|+ .|+.++-||.-.-||+..-+. ..+. +...+.++
T Consensus 230 l~~~l~d~v~al~r~Qde---~GlW~tiLDd~~~~---------sy~EsSaSa~faYallkgi~~--G~l~-~~~~~~~~ 294 (357)
T COG4225 230 LLNVLRDLVDALIRYQDE---SGLWHTILDDGRPG---------SYLESSASAGFAYALLKGINL--GILD-PEYAPVAE 294 (357)
T ss_pred HHHHHHHHHHHHHHhhcc---ccchhhhhccCCCC---------CchhhhHHHHHHHHHHHHHhc--CCCC-chhhHHHH
Confidence 456678888888888985 68775332222233 356777888888888873221 0112 22457999
Q ss_pred HHHHHHHhcccCCC
Q 031897 107 DAVNCILSLQSETG 120 (151)
Q Consensus 107 rav~~Ll~~Qn~dG 120 (151)
+|.+=|+..-.++|
T Consensus 295 kA~~aLl~~i~~~g 308 (357)
T COG4225 295 KALDALLGHIDEEG 308 (357)
T ss_pred HHHHHHHhhccccc
Confidence 99999998766654
No 107
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=29.31 E-value=81 Score=17.06 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q 031897 31 LMKAHDFL 38 (151)
Q Consensus 31 i~rA~~~L 38 (151)
+.+|++||
T Consensus 29 ~~~A~~~L 36 (37)
T smart00165 29 VERAAEYL 36 (37)
T ss_pred HHHHHHHH
Confidence 45555555
No 108
>PLN02171 endoglucanase
Probab=28.99 E-value=4e+02 Score=24.68 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcccCCCC
Q 031897 102 PERFYDAVNCILSLQSETGG 121 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGG 121 (151)
.+.++=+.|||+.||.++|+
T Consensus 119 Ldeikw~~Dyllk~~~~~~~ 138 (629)
T PLN02171 119 MDAVKWGTDYFIKAHPEPNV 138 (629)
T ss_pred HHHHHHHHHHHHHhccCCCe
Confidence 45678899999999976543
No 109
>PLN02613 endoglucanase
Probab=28.82 E-value=3.1e+02 Score=24.64 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=46.5
Q ss_pred CCccHHHHHHHHHHHhhccC---CCCCCCccccc--CC------CCCccccccCCCCCcccccchHHHHHHHH----Hhc
Q 031897 25 DEIGPILMKAHDFLKASQVT---DNPQGDFRSMF--RH------ISKGGWTFSNKDHGWQVSDCTAEALLCCL----HFS 89 (151)
Q Consensus 25 ~~~~~~i~rA~~~L~~~Q~~---~~~~G~~~~~~--~~------~~~GgW~fs~~~~~~pd~d~Ta~al~aL~----~~~ 89 (151)
.+|...+++++.|...+..- ++..+.|.... .+ .-.|||-=...+.-|. --.+.++.-|. ...
T Consensus 25 ~~Y~~aL~~sl~Fy~~QRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwyDAGD~~Ky~--~p~a~s~t~L~w~~~e~~ 102 (498)
T PLN02613 25 PDYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGKPENVNLTGGYYDAGDNVKFG--WPMAFTVTLLSWAAIEYQ 102 (498)
T ss_pred chHHHHHHHHHHHHHHhcCcCCCcccCCCCcccccCCCcccCcccCCCCceeCCCCceec--CchHHHHHHHHHHHHHhH
Confidence 45899999999999875432 21233453211 11 2356775221111111 01233332222 121
Q ss_pred cCCccccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 90 MMRPEIVGEKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 90 ~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
......-+.+-..+.|+=+.|||+.||.++|++
T Consensus 103 ~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~ 135 (498)
T PLN02613 103 NEISSVNQLGYLRSAIRWGTDFILRAHTSPTTL 135 (498)
T ss_pred HHHhhcCCchHHHHHHHHHHHHHHHhccCCCeE
Confidence 111111123333556777999999998775444
No 110
>PLN02340 endoglucanase
Probab=27.64 E-value=2.4e+02 Score=26.00 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=16.1
Q ss_pred CCCccHHHHHHHHHHHhhcc
Q 031897 24 TDEIGPILMKAHDFLKASQV 43 (151)
Q Consensus 24 ~~~~~~~i~rA~~~L~~~Q~ 43 (151)
..+|.+.+++++.|...++.
T Consensus 28 ~~nY~~aL~~Sl~Fy~aQRs 47 (614)
T PLN02340 28 AFNYGGALDKTLLFFEAQRS 47 (614)
T ss_pred CCcHHHHHHHHHHHHHHhcC
Confidence 34689999999999987553
No 111
>PLN02308 endoglucanase
Probab=27.44 E-value=3.5e+02 Score=24.21 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 031897 102 PERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW 122 (151)
.+.|+=+.|||++||.++|++
T Consensus 115 ldeikw~~D~llkm~~~~~~v 135 (492)
T PLN02308 115 VKAVKWATDYLMKATAIPNVV 135 (492)
T ss_pred HHHHHHHHHHHHHhcCCCCeE
Confidence 356788899999999998876
No 112
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=26.06 E-value=1.5e+02 Score=17.38 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHh
Q 031897 76 DCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS 114 (151)
Q Consensus 76 d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~ 114 (151)
|....++.||..++- ....+.+++.=+..
T Consensus 1 d~~~d~~~AL~~LGy----------~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 1 DALEDALEALISLGY----------SKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHHHTTS-----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCC----------CHHHHHHHHHHhhc
Confidence 346678899999873 56777778777765
No 113
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.76 E-value=72 Score=27.86 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHH
Q 031897 28 GPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYD 107 (151)
Q Consensus 28 ~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~r 107 (151)
...+++|++||...|..++|. .|- ..|+|++-|.-+....+ .-.....+.
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPe-------------tWv------------~vAEa~I~LGNL~d~eS-----~eQe~~Y~e 380 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPE-------------TWV------------DVAEAMIDLGNLYDNES-----KEQEKAYKE 380 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TT-------------HHH------------HHHHHHHHHHHH-SSHH-----H-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCChh-------------HHH------------HHHHHHhhhhcccccch-----HHHHHHHHH
Confidence 567999999999999976432 222 47888888887753211 124567888
Q ss_pred HHHHHHhcccCCC
Q 031897 108 AVNCILSLQSETG 120 (151)
Q Consensus 108 av~~Ll~~Qn~dG 120 (151)
|.+-|...++..-
T Consensus 381 AE~iL~kAN~at~ 393 (404)
T PF12753_consen 381 AEKILKKANKATN 393 (404)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHhhccc
Confidence 9999999888653
No 114
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=25.39 E-value=93 Score=26.83 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=34.5
Q ss_pred cccccchHHHHHHHHHhccCCccccCCCCCHHH--HHHHHHHHHhcccCCCCccccCCCCcchhh
Q 031897 72 WQVSDCTAEALLCCLHFSMMRPEIVGEKMEPER--FYDAVNCILSLQSETGGVPAWEPTGAPSWL 134 (151)
Q Consensus 72 ~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~--l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l 134 (151)
.+-.|.+|..|.+|..+..... .-.....+. |+..++|+.+.=+. -+++-||-+++..+.
T Consensus 122 ~~Q~D~~gl~l~~l~~~~~~g~--~~~~~~~~~~~I~~~~~yi~~~w~~-pd~dlWEe~~g~~~f 183 (448)
T PF00723_consen 122 RPQNDGPGLRLLALWQYIDSGL--QIIYTYWEVSFIKNDLDYIERNWRE-PDFDLWEERNGIHFF 183 (448)
T ss_dssp --BTHHHHHHHHHHHHHHHTTH--HHHHTHHHHHTHHHHHHHHHHHTTS-BEE-TTSS-EEEEHH
T ss_pred CcCCCchHHHHHHHHHHHHcCC--CcccccchhHHHHHHHHHHHHHcCC-cCCccccccCCCCcc
Confidence 3789999999999999732110 000123445 89999999876332 256666655444443
No 115
>PHA01516 hypothetical protein
Probab=24.92 E-value=60 Score=22.04 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTD 45 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~ 45 (151)
|...|.|+||-++.-.-|.+.|++ .|=++|-..+|.-+
T Consensus 50 cn~~glqm~de~ltd~dleem~lt-------drwvdwy~e~~~~d 87 (98)
T PHA01516 50 CNANGLQMWDESLTDQDLEEMELT-------DRWVDWYSECQCYD 87 (98)
T ss_pred cCccchhhhhhhcchhHHHHccch-------hhhhhhhhhhcccc
Confidence 344589999999999999999986 35577776666654
No 116
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=24.21 E-value=26 Score=14.11 Aligned_cols=7 Identities=57% Similarity=0.999 Sum_probs=3.9
Q ss_pred hccChhh
Q 031897 135 ELLNPIE 141 (151)
Q Consensus 135 ~~~~~~~ 141 (151)
++|||++
T Consensus 3 eYLpP~~ 9 (9)
T PF02757_consen 3 EYLPPVE 9 (9)
T ss_pred cccCCCC
Confidence 4566653
No 117
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=24.11 E-value=3.4e+02 Score=21.60 Aligned_cols=36 Identities=22% Similarity=-0.023 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCC
Q 031897 10 DCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTD 45 (151)
Q Consensus 10 dTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~ 45 (151)
+++-++.+|..... +++|.+.+++++++++++..++
T Consensus 140 G~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~ 178 (321)
T cd04791 140 GWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD 178 (321)
T ss_pred CcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC
Confidence 44555555554432 2346677888888888766543
No 118
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=23.76 E-value=74 Score=25.09 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh----hccCCCCCCCcc-cccCCCCCccccccCCCCCcccccchHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKA----SQVTDNPQGDFR-SMFRHISKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~----~Q~~~~~~G~~~-~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
..|.+......++.+=+..+ .+.++++++.+.. .|+.. +|... +.-| ...+++| +..+
T Consensus 165 nNh~~~~~~~~~~~ai~l~d-~~~~~~a~~~~~~~~~~~qi~~--dG~~p~e~~R--~~~~~~Y------------~~~~ 227 (272)
T PF05426_consen 165 NNHGTWANAAVMAIAIFLDD-DELYDRAVNRFKKGIINKQIDP--DGSQPDESGR--GERSQHY------------HNFA 227 (272)
T ss_dssp SHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCHHCCC-T--TS-BCCHHCS--GCCHHHH------------HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhcccc--ccccccccCC--CCCCchh------------HHHH
Confidence 56666655444433323334 6778888887333 45553 55321 1111 0122222 5667
Q ss_pred HHHHHHhccCCccccCCCC-----CHHHHHHHHHHHHhccc
Q 031897 82 LLCCLHFSMMRPEIVGEKM-----EPERFYDAVNCILSLQS 117 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~-----~~~~l~rav~~Ll~~Qn 117 (151)
|.+|+.+.+.-. ..|+.+ ...+|.++++|+...-.
T Consensus 228 L~~l~~~a~~a~-~~G~dl~~y~~~~~~l~~a~~~~~~~~~ 267 (272)
T PF05426_consen 228 LQALLTLAELAR-NQGVDLYSYAPNGNRLHKAVEYLAPYIL 267 (272)
T ss_dssp HHHHHHHHHHHH-CTT--GCC--CTTBSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HhCCCcccCCCCChHHHHHHHHHHHHhc
Confidence 777766543211 123332 45689999999987654
No 119
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.29 E-value=3.8e+02 Score=22.92 Aligned_cols=102 Identities=9% Similarity=-0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhc
Q 031897 10 DCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFS 89 (151)
Q Consensus 10 dTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 89 (151)
=.+++-.+|...|.+-+ ...|..+++-+++--.-+ +|+ .+..... |.+ | .++|+.-...+-
T Consensus 157 F~v~v~~~L~~~G~~~d-~~~i~~~l~~~e~~Y~Gd----GWY---~DG~~~~--~DY----Y-----ns~aih~y~l~~ 217 (361)
T PF10022_consen 157 FRVMVEAFLKKVGEEYD-EERIDYDLERIEEWYLGD----GWY---SDGPEFQ--FDY----Y-----NSWAIHPYLLLY 217 (361)
T ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHHhccC----Ccc---ccCCccC--Ccc----h-----HHHHHHHHHHHH
Confidence 36788889999999877 789999999998877752 454 2222121 222 1 245544333211
Q ss_pred -cCCccccCCCCCHHHHHHHHHHHHhc---ccCCCCccccCCCCcc
Q 031897 90 -MMRPEIVGEKMEPERFYDAVNCILSL---QSETGGVPAWEPTGAP 131 (151)
Q Consensus 90 -~~~~~~~g~~~~~~~l~rav~~Ll~~---Qn~dGGW~~~~~~~~~ 131 (151)
+..++ ...++.....+|+.+|.... =.+||....|.+.-..
T Consensus 218 ~~~~~~-~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~GRSltY 262 (361)
T PF10022_consen 218 ARLMGD-EDPERAARYRQRAQRFAEDYERMFSPDGAAPPFGRSLTY 262 (361)
T ss_pred HHHhcc-cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccccHHH
Confidence 11100 01112344566666666544 4589999888764443
No 120
>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.
Probab=23.23 E-value=96 Score=22.01 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhc
Q 031897 30 ILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFS 89 (151)
Q Consensus 30 ~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 89 (151)
.|.+..+|+..-+.. .||.| .||-+.|..++.+|+.-.
T Consensus 2 ~le~~~~~~~~~a~~----------------~G~~~------NpD~~~~~~v~~GL~~nk 39 (108)
T PF02943_consen 2 ELEKMYKFLEKYAEK----------------SGYKL------NPDEEVTDDVLEGLARNK 39 (108)
T ss_dssp HHHHHHHHHHHHHHH----------------TT-B-------BSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----------------hCCEE------CCCHHHHHHHHHHHHHHH
Confidence 467778888876665 34554 588999999999999854
No 121
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=34 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhcccccc
Q 031897 103 ERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEH 150 (151)
Q Consensus 103 ~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~ 150 (151)
+.-..=+.|+.+ +=+++.|-.||. ++|.+-||++|+.|
T Consensus 204 e~S~~Li~w~~~-~F~~a~fv~YEQ---------i~~~D~Fg~vM~~n 241 (335)
T KOG2918|consen 204 EESANLIKWAAS-KFENAHFVNYEQ---------INPNDRFGKVMLAN 241 (335)
T ss_pred HHHHHHHHHHHH-hCCcccEEEEec---------cCCCChHHHHHHHH
Confidence 333334445433 237889998987 56899999999864
No 122
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=22.96 E-value=88 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 031897 13 LAIQALLACNLTDEIGPILMKAHDFLKASQ 42 (151)
Q Consensus 13 la~~AL~~~G~~~~~~~~i~rA~~~L~~~Q 42 (151)
-...-|.++|+. ..-|.+|++||.+-.
T Consensus 25 ~L~~~L~~aGF~---~~eI~~Al~WL~~L~ 51 (155)
T PF04361_consen 25 DLTRELSAAGFE---DEEINKALDWLEGLA 51 (155)
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 345668899997 457999999998633
No 123
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.02 E-value=5e+02 Score=22.16 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHHcCC----CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHH
Q 031897 6 SQTWDCALAIQALLACNL----TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~----~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
.++=+.|...+||..+-. +-+ ...-++-++||.+.-..+ ....-|-| -.+.+
T Consensus 106 Q~~VEaa~la~aL~~a~~~lW~~L~-~~~k~~l~~wL~~~~~~~------------~~~nNW~l-----------F~v~v 161 (361)
T PF10022_consen 106 QRLVEAASLALALLRAPEWLWDPLD-EEEKENLVDWLKQIRGIK------------PPDNNWLL-----------FRVMV 161 (361)
T ss_pred hhHhHHHHHHHHHHHCHHHHHhhCC-HHHHHHHHHHHHhcCcCC------------CccchhHH-----------HHHHH
Confidence 456678888888888763 112 455677888998533322 11233432 13455
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dG 120 (151)
..+|..+ |.+.+.+.++.+++-+.+.--.||
T Consensus 162 ~~~L~~~--------G~~~d~~~i~~~l~~~e~~Y~GdG 192 (361)
T PF10022_consen 162 EAFLKKV--------GEEYDEERIDYDLERIEEWYLGDG 192 (361)
T ss_pred HHHHHHc--------CCCCcHHHHHHHHHHHHHHhccCC
Confidence 5555554 667899999999999999888775
No 124
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=21.98 E-value=74 Score=18.91 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcc
Q 031897 101 EPERFYDAVNCILSLQ 116 (151)
Q Consensus 101 ~~~~l~rav~~Ll~~Q 116 (151)
....|..|++||..+|
T Consensus 40 K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 40 KASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4678999999999876
No 125
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=2e+02 Score=26.89 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=33.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcccC-CCCccccCCCCcchhhhcc
Q 031897 96 VGEKMEPERFYDAVNCILSLQSE-TGGVPAWEPTGAPSWLELL 137 (151)
Q Consensus 96 ~g~~~~~~~l~rav~~Ll~~Qn~-dGGW~~~~~~~~~~~l~~~ 137 (151)
.+..++.+.+.+++.-|.+.... .|||+.+.+--.+..|+.|
T Consensus 176 ~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~L 218 (667)
T COG1331 176 AGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFL 218 (667)
T ss_pred ccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHH
Confidence 46678889999999999998875 5999999886666555543
No 126
>PLN02345 endoglucanase
Probab=20.59 E-value=1.1e+02 Score=27.15 Aligned_cols=22 Identities=0% Similarity=0.007 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcccCCCCcc
Q 031897 102 PERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.+.|+=+.|||+.||.++|++=
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y 106 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLY 106 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEE
Confidence 4567789999999999988763
Done!