Query 031897
Match_columns 151
No_of_seqs 104 out of 1035
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 5.4E-31 1.9E-35 237.0 12.7 148 1-150 378-528 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 9.9E-28 3.4E-32 212.6 10.6 131 1-139 304-434 (631)
3 2sqc_A Squalene-hopene cyclase 99.6 5.5E-15 1.9E-19 130.9 10.3 106 6-122 373-485 (631)
4 1r76_A Pectate lyase; A-helica 99.5 3.2E-14 1.1E-18 120.3 8.4 107 29-141 81-212 (408)
5 1gxm_A Pectate lyase; mechanis 99.5 1.2E-14 4E-19 120.1 5.0 97 34-141 36-134 (332)
6 1w6k_A Lanosterol synthase; cy 99.3 7.2E-12 2.5E-16 112.8 10.7 104 6-125 584-690 (732)
7 2h6f_B Protein farnesyltransfe 99.1 5E-11 1.7E-15 101.8 4.8 93 6-125 148-242 (437)
8 1gxm_A Pectate lyase; mechanis 99.1 8E-11 2.7E-15 97.2 4.5 108 6-122 71-188 (332)
9 2h6f_B Protein farnesyltransfe 99.0 5.4E-10 1.8E-14 95.5 7.9 96 6-125 99-194 (437)
10 1r76_A Pectate lyase; A-helica 99.0 1.9E-10 6.6E-15 97.3 4.8 112 7-127 147-270 (408)
11 1n4q_B Geranyltransferase type 99.0 1.3E-09 4.5E-14 91.5 7.7 95 6-126 120-214 (377)
12 3dss_B Geranylgeranyl transfer 98.9 2.7E-09 9.4E-14 88.0 7.9 93 6-126 93-185 (331)
13 3dss_B Geranylgeranyl transfer 98.9 2.9E-09 9.9E-14 87.9 6.2 90 7-124 142-231 (331)
14 3q7a_B Farnesyltransferase bet 98.8 1.3E-08 4.4E-13 88.5 9.1 93 5-124 137-236 (520)
15 1qqf_A Protein (complement C3D 98.8 1.5E-08 5E-13 80.7 7.1 104 5-118 64-173 (277)
16 2wy7_A Complement C3D fragment 98.7 2E-08 6.8E-13 81.3 6.9 104 5-118 80-189 (310)
17 1hzf_A Complement factor C4A; 98.7 5.3E-08 1.8E-12 80.8 9.5 91 12-125 66-164 (367)
18 1qqf_A Protein (complement C3D 98.6 3.2E-07 1.1E-11 72.9 9.6 77 28-127 37-114 (277)
19 1hzf_A Complement factor C4A; 98.5 9E-08 3.1E-12 79.4 6.0 101 6-115 118-226 (367)
20 2wy7_A Complement C3D fragment 98.5 4.7E-07 1.6E-11 73.2 9.6 77 28-127 53-130 (310)
21 3q7a_B Farnesyltransferase bet 98.4 7.3E-07 2.5E-11 77.5 9.3 101 5-124 86-188 (520)
22 1n4q_B Geranyltransferase type 98.4 3.5E-07 1.2E-11 76.7 6.8 109 5-124 45-163 (377)
23 2bb6_A TCII, TC II, transcobal 98.4 7.9E-07 2.7E-11 75.4 8.3 90 5-123 133-226 (414)
24 2bb6_A TCII, TC II, transcobal 98.3 2.5E-06 8.7E-11 72.3 8.2 85 6-123 176-269 (414)
25 4acq_A Alpha-2-macroglobulin; 98.3 2.2E-06 7.4E-11 82.2 8.7 92 6-115 1014-1108(1451)
26 4acq_A Alpha-2-macroglobulin; 98.0 7.6E-06 2.6E-10 78.5 7.1 79 29-126 983-1061(1451)
27 2hr0_B Complement C3 alpha' ch 98.0 1.8E-05 6.2E-10 72.6 8.5 104 5-118 325-434 (915)
28 2pmv_A Gastric intrinsic facto 97.9 4.8E-06 1.7E-10 70.3 3.7 85 6-123 150-245 (399)
29 2pn5_A TEP1R, thioester-contai 97.9 2.8E-05 9.7E-10 73.5 8.0 92 11-124 849-945 (1325)
30 2pn5_A TEP1R, thioester-contai 97.8 2E-05 7E-10 74.5 6.3 101 5-123 898-1005(1325)
31 2hr0_B Complement C3 alpha' ch 97.7 7.7E-05 2.6E-09 68.4 8.3 75 29-126 299-374 (915)
32 2pmv_A Gastric intrinsic facto 97.6 6.6E-05 2.2E-09 63.4 5.4 89 6-123 112-203 (399)
33 3dra_B Geranylgeranyltransfera 97.0 0.0013 4.3E-08 55.4 7.0 116 5-125 91-213 (390)
34 4fxk_B Complement C4-A alpha c 96.7 0.011 3.6E-07 53.0 10.3 107 6-125 509-623 (767)
35 3s9v_A Abietadiene synthase, c 96.6 0.0014 4.9E-08 59.5 3.9 83 5-115 53-135 (785)
36 3sdr_A Alpha-bisabolene syntha 96.4 0.0024 8.2E-08 58.3 4.3 83 5-115 80-162 (817)
37 3prx_B Cobra venom factor; imm 96.4 0.00054 1.8E-08 66.6 0.0 99 6-115 1057-1162(1642)
38 2b39_A C3; thioester, immune d 96.3 0.02 6.8E-07 55.6 10.5 101 5-115 1072-1178(1661)
39 3p5p_A Taxadiene synthase; cla 96.2 0.0028 9.5E-08 57.5 3.7 84 5-116 30-115 (764)
40 3pya_A ENT-copalyl diphosphate 96.2 0.0034 1.2E-07 56.6 4.0 81 5-115 31-111 (727)
41 3dra_B Geranylgeranyltransfera 96.2 0.013 4.4E-07 49.2 7.3 106 5-125 29-141 (390)
42 4fxk_B Complement C4-A alpha c 95.9 0.027 9.4E-07 50.4 8.6 96 8-126 339-442 (767)
43 3cu7_A Complement C5; Mg domai 95.6 0.037 1.3E-06 53.8 8.5 101 7-125 1184-1287(1676)
44 2b39_A C3; thioester, immune d 95.3 0.046 1.6E-06 53.0 8.4 72 30-124 1047-1119(1661)
45 3cu7_A Complement C5; Mg domai 95.0 0.051 1.7E-06 52.8 7.5 47 73-125 1074-1121(1676)
46 3prx_B Cobra venom factor; imm 94.9 0.0047 1.6E-07 60.1 0.0 45 77-126 1061-1106(1642)
47 3gt5_A N-acetylglucosamine 2-e 91.9 0.26 9E-06 40.6 5.8 102 7-127 50-162 (402)
48 1ulv_A Glucodextranase; GH fam 91.6 0.48 1.7E-05 44.1 7.8 88 8-116 331-421 (1020)
49 3sdr_A Alpha-bisabolene syntha 90.5 0.045 1.5E-06 50.0 -0.3 42 73-124 81-122 (817)
50 2gz6_A N-acetyl-D-glucosamine 90.5 0.17 5.7E-06 41.0 3.2 105 7-124 51-160 (388)
51 3s9v_A Abietadiene synthase, c 90.3 0.041 1.4E-06 50.0 -0.7 23 102-124 73-95 (785)
52 2zbl_A Putative isomerase; N-a 90.2 0.41 1.4E-05 39.6 5.4 100 6-123 48-155 (421)
53 3p5p_A Taxadiene synthase; cla 89.9 0.046 1.6E-06 49.5 -0.7 23 102-124 52-74 (764)
54 3pya_A ENT-copalyl diphosphate 89.9 0.082 2.8E-06 47.7 0.9 21 105-125 52-72 (727)
55 3k11_A Putative glycosyl hydro 88.6 0.4 1.4E-05 40.8 4.2 111 9-136 82-203 (445)
56 3pmm_A Putative cytoplasmic pr 88.3 3 0.0001 34.3 9.3 81 27-124 261-341 (382)
57 1lf6_A Glucoamylase; (alpha/al 88.0 0.86 2.9E-05 40.4 6.1 86 9-116 343-429 (684)
58 3pmm_A Putative cytoplasmic pr 87.3 0.7 2.4E-05 38.2 4.8 108 6-125 165-285 (382)
59 1fp3_A N-acyl-D-glucosamine 2- 86.9 0.76 2.6E-05 37.4 4.8 103 6-125 53-169 (402)
60 2ahf_A Unsaturated glucuronyl 86.2 0.85 2.9E-05 37.8 4.8 105 9-121 148-262 (377)
61 1nc5_A Hypothetical protein YT 85.1 2 6.7E-05 35.0 6.4 102 7-121 209-323 (373)
62 3k11_A Putative glycosyl hydro 84.5 2.6 9E-05 35.7 7.1 80 27-122 292-371 (445)
63 2vn4_A Glucoamylase; hydrolase 84.3 3.8 0.00013 35.9 8.2 107 8-128 52-181 (599)
64 1vg5_A RSGI RUH-014, rhomboid 81.0 1.9 6.4E-05 27.7 3.7 30 10-45 42-71 (73)
65 1wji_A Tudor domain containing 78.0 2.7 9.2E-05 26.0 3.7 29 11-45 23-51 (63)
66 1lf6_A Glucoamylase; (alpha/al 76.9 4.2 0.00014 35.9 6.0 82 25-123 292-379 (684)
67 1wgn_A UBAP1, ubiquitin associ 76.7 2.9 9.8E-05 26.1 3.5 25 14-44 36-60 (63)
68 2dna_A Unnamed protein product 75.8 4.2 0.00014 25.6 4.1 30 78-120 34-63 (67)
69 1wgn_A UBAP1, ubiquitin associ 74.2 4 0.00014 25.4 3.7 17 104-120 46-62 (63)
70 2fba_A Glucoamylase Glu1; (alp 72.3 6.1 0.00021 33.7 5.7 102 8-117 68-202 (492)
71 2knz_A Ubiquilin-4; cytoplasm, 72.3 3.9 0.00013 24.2 3.2 26 11-42 26-51 (53)
72 1wiv_A UBP14, ubiquitin-specif 71.9 5.3 0.00018 25.3 4.0 28 11-44 43-70 (73)
73 2dna_A Unnamed protein product 71.4 4.3 0.00015 25.6 3.4 28 11-44 34-61 (67)
74 1veg_A NEDD8 ultimate buster-1 70.9 4.4 0.00015 26.6 3.5 13 31-43 57-69 (83)
75 2zzr_A Unsaturated glucuronyl 70.1 8.4 0.00029 32.0 5.9 105 10-126 174-291 (397)
76 2ekk_A UBA domain from E3 ubiq 69.6 4.9 0.00017 23.0 3.2 23 12-41 24-46 (47)
77 3ren_A Glycosyl hydrolase, fam 69.5 21 0.00071 29.3 8.0 99 10-137 233-340 (350)
78 1gai_A Glucoamylase-471; hydro 69.0 10 0.00035 32.3 6.3 102 8-127 53-179 (472)
79 2cpw_A CBL-interacting protein 67.8 6.7 0.00023 24.1 3.7 28 12-44 34-61 (64)
80 2gz6_A N-acetyl-D-glucosamine 67.8 7.1 0.00024 31.2 4.9 100 6-122 112-216 (388)
81 2crn_A Ubash3A protein; compac 66.6 6.4 0.00022 24.3 3.5 29 11-44 23-51 (64)
82 3gt5_A N-acetylglucosamine 2-e 65.6 5.7 0.00019 32.4 4.0 96 6-114 110-207 (402)
83 4fnv_A Heparinase III protein, 65.0 11 0.00039 33.5 6.0 26 101-126 342-374 (702)
84 2z07_A Putative uncharacterize 64.9 5.9 0.0002 32.3 3.9 36 8-51 33-69 (420)
85 1vej_A Riken cDNA 4931431F19; 62.0 10 0.00035 24.2 3.8 14 31-44 58-71 (74)
86 1nc5_A Hypothetical protein YT 61.5 27 0.00093 28.1 7.3 47 78-124 215-263 (373)
87 2cos_A Serine/threonine protei 61.1 14 0.00048 22.2 4.0 29 12-45 24-52 (54)
88 1whc_A RSGI RUH-027, UBA/UBX 3 60.4 9.7 0.00033 23.3 3.4 29 11-44 23-51 (64)
89 2g3q_A Protein YBL047C; endocy 59.3 9.8 0.00033 21.1 3.1 23 12-40 19-41 (43)
90 1wr1_B Ubiquitin-like protein 59.0 9.9 0.00034 23.0 3.2 11 31-41 46-56 (58)
91 2dah_A Ubiquilin-3; UBA domain 57.7 15 0.00051 21.8 3.8 14 31-44 38-51 (54)
92 2bwb_A Ubiquitin-like protein 57.2 10 0.00035 21.7 2.9 24 11-40 22-45 (46)
93 2jy5_A Ubiquilin-1; UBA, alter 56.8 8.2 0.00028 22.7 2.5 10 31-40 41-50 (52)
94 1ulv_A Glucodextranase; GH fam 56.1 10 0.00035 35.3 4.2 37 77-124 333-370 (1020)
95 2dak_A Ubiquitin carboxyl-term 55.6 8 0.00027 23.5 2.4 27 12-44 24-50 (63)
96 2dag_A Ubiquitin carboxyl-term 53.5 14 0.00049 23.3 3.4 27 13-44 25-51 (74)
97 3eu8_A Putative glucoamylase; 53.4 31 0.0011 29.1 6.4 78 9-90 65-147 (430)
98 1ify_A HHR23A, UV excision rep 52.7 10 0.00034 22.0 2.4 25 11-41 22-46 (49)
99 2dai_A Ubadc1, ubiquitin assoc 52.1 16 0.00053 23.7 3.5 14 31-44 57-70 (83)
100 1v7w_A Chitobiose phosphorylas 47.8 9.2 0.00032 34.0 2.5 105 9-121 349-482 (807)
101 2dkl_A Trinucleotide repeat co 47.8 27 0.00094 22.6 4.2 37 8-44 18-62 (85)
102 1vek_A UBP14, ubiquitin-specif 47.3 21 0.00073 23.0 3.6 14 31-44 58-71 (84)
103 2vn4_A Glucoamylase; hydrolase 46.1 17 0.00059 31.7 3.9 36 77-123 54-99 (599)
104 1q02_A Sequestosome 1; helical 46.1 25 0.00086 20.9 3.4 28 22-51 1-28 (52)
105 3c68_A Uncharacterized protein 43.5 23 0.0008 31.8 4.4 31 8-43 323-353 (761)
106 3rrs_A Cellobiose phosphorylas 42.8 85 0.0029 28.4 8.0 102 7-120 365-479 (822)
107 1dv0_A DNA repair protein HHR2 42.3 10 0.00035 21.8 1.3 27 9-41 16-42 (47)
108 3e6u_A LANC-like protein 1; al 42.1 12 0.0004 30.9 2.1 45 78-126 233-277 (411)
109 2cwb_A Chimera of immunoglobul 41.9 23 0.00077 24.2 3.2 26 10-41 80-105 (108)
110 2okx_A Rhamnosidase B; alpha b 36.8 52 0.0018 30.0 5.7 96 9-122 578-674 (956)
111 2g0d_A Nisin biosynthesis prot 36.3 1.4E+02 0.0048 23.8 7.8 26 99-124 226-254 (409)
112 3qde_A Cellobiose phosphorylas 32.6 95 0.0032 27.9 6.6 101 8-120 359-472 (811)
113 1dj7_A Ferredoxin thioredoxin 32.1 35 0.0012 23.7 2.9 41 27-89 7-47 (117)
114 1z96_A DNA-damage, UBA-domain 31.7 51 0.0017 17.4 3.1 8 31-38 32-39 (40)
115 2zbl_A Putative isomerase; N-a 31.3 80 0.0027 25.6 5.5 99 6-116 108-208 (421)
116 3nnb_A Alginate lyase; structu 30.6 48 0.0017 27.3 4.0 101 6-125 219-331 (382)
117 1ks8_A Endo-B-1,4-glucanase; c 29.2 55 0.0019 27.2 4.2 21 101-121 92-112 (433)
118 4gl3_A Putative glucoamylase; 28.7 1.9E+02 0.0064 24.1 7.4 79 10-90 56-139 (424)
119 4ae4_A Ubiquitin-associated pr 28.4 43 0.0015 23.0 2.9 26 13-44 24-49 (118)
120 3h7l_A Endoglucanase; dehydrog 27.3 32 0.0011 30.2 2.4 21 102-122 193-213 (586)
121 2zzr_A Unsaturated glucuronyl 26.2 59 0.002 26.9 3.8 77 26-117 134-210 (397)
122 1fp3_A N-acyl-D-glucosamine 2- 25.9 74 0.0025 25.3 4.3 42 78-123 316-359 (402)
123 3k7x_A LIN0763 protein; Q92DQ0 24.7 64 0.0022 25.8 3.7 35 7-41 44-81 (349)
124 1ia6_A Cellulase CEL9M; cellul 24.5 96 0.0033 25.8 4.9 71 26-118 275-345 (441)
125 2ahf_A Unsaturated glucuronyl 23.8 80 0.0027 25.8 4.2 81 25-120 107-189 (377)
126 3e6u_A LANC-like protein 1; al 22.7 1.7E+02 0.0059 23.7 6.0 25 27-54 252-276 (411)
127 2lbc_A Ubiquitin carboxyl-term 22.0 1E+02 0.0035 20.9 3.8 13 31-43 106-118 (126)
128 1wgl_A TOLL-interacting protei 21.6 75 0.0026 19.0 2.7 19 103-121 37-55 (59)
129 3s88_J GP2, GP2, envelope glyc 21.5 1.1E+02 0.0036 22.2 3.9 36 8-43 90-126 (167)
130 2fba_A Glucoamylase Glu1; (alp 21.1 89 0.0031 26.4 4.0 42 77-123 70-116 (492)
131 1qaz_A Protein (alginate lyase 20.9 1.5E+02 0.005 24.1 5.2 101 8-127 188-297 (351)
132 1a0a_A BHLH, protein (phosphat 20.5 67 0.0023 19.4 2.4 19 100-118 42-60 (63)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.97 E-value=5.4e-31 Score=237.05 Aligned_cols=148 Identities=45% Similarity=0.727 Sum_probs=132.1
Q ss_pred CCcC-CCChhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccc
Q 031897 1 MQSF-GSQTWDCALAIQALLACNLTD--EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDC 77 (151)
Q Consensus 1 ~q~~-~~~~wdTala~~AL~~~G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 77 (151)
||+| |+|+|||+|+++||.++|.+. ++.+.++||++||+++|++++ .|+|...|++.++|||+|++.++++||+|+
T Consensus 378 ~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~ 456 (732)
T 1w6k_A 378 MQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC 456 (732)
T ss_dssp ECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred eCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCcccc
Confidence 5888 799999999999999999854 368899999999999998753 578878899999999999999999999999
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhcccccc
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEH 150 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~ 150 (151)
|+++|++|..+.+..++ .|.++..++++++++||+++||+||||++|+.+++..||+++||+|+|+++|+|+
T Consensus 457 TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~ 528 (732)
T 1w6k_A 457 TAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY 528 (732)
T ss_dssp HHHHHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCC
T ss_pred HHHHHHHHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCC
Confidence 99999999998653211 2456788999999999999999999999999999999999999999999999985
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.95 E-value=9.9e-28 Score=212.58 Aligned_cols=131 Identities=23% Similarity=0.305 Sum_probs=117.9
Q ss_pred CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
||+|+||+|||+++++||.++|.+.+ ++.++||++||++.|+.. +|+|...+++.++|||+|++.+++|||+|+||+
T Consensus 304 ~~~~~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~ 380 (631)
T 2sqc_A 304 FQASISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAV 380 (631)
T ss_dssp ECSSCCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHH
T ss_pred eCCCCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHH
Confidence 58899999999999999999999766 899999999999999963 689998899999999999999999999999999
Q ss_pred HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccCh
Q 031897 81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNP 139 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~ 139 (151)
||+||..++. + ..+...++++++++||+++|++||||+.|+.+++..+++.+|+
T Consensus 381 al~AL~~~~~-~----~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F 434 (631)
T 2sqc_A 381 VVWALNTLRL-P----DERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPF 434 (631)
T ss_dssp HHHHHTTCCC-S----CHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTT
T ss_pred HHHHHHHcCC-C----ccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCcccccccccc
Confidence 9999998763 1 1123467899999999999999999999999999999999964
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.58 E-value=5.5e-15 Score=130.91 Aligned_cols=106 Identities=21% Similarity=0.166 Sum_probs=84.1
Q ss_pred CChhHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHhhccCCCCCCCcccccC---CCCCccccccCCCCC--cccccch
Q 031897 6 SQTWDCALAIQALLACNLTDE--IGPILMKAHDFLKASQVTDNPQGDFRSMFR---HISKGGWTFSNKDHG--WQVSDCT 78 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~--~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~---~~~~GgW~fs~~~~~--~pd~d~T 78 (151)
+.+|||+++++||..+|.+.+ +.+.+++|++||+++|.+ +|+|...-. ..-.++|.|+..+.. +|++|+|
T Consensus 373 p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~---dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~T 449 (631)
T 2sqc_A 373 PDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSS---NGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVT 449 (631)
T ss_dssp CBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCT---TSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHH
T ss_pred CchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCC---CCCCCccCCCCccccccccccccCCcccCCCCchHH
Confidence 459999999999999998532 367899999999999998 588864311 122467777654322 3899999
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
+.+|++|..++. +...++++||++||+++|++||||
T Consensus 450 a~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~DGsw 485 (631)
T 2sqc_A 450 AHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKPDGSW 485 (631)
T ss_dssp HHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCTTSCC
T ss_pred HHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCCCCCC
Confidence 999999998742 345789999999999999999999
No 4
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.51 E-value=3.2e-14 Score=120.34 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccc--cCCC------------------CCccccc----cCCCCCcccccchHHHHHH
Q 031897 29 PILMKAHDFLKASQVTDNPQGDFRSM--FRHI------------------SKGGWTF----SNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 29 ~~i~rA~~~L~~~Q~~~~~~G~~~~~--~~~~------------------~~GgW~f----s~~~~~~pd~d~Ta~al~a 84 (151)
+..++.++.|+.-|.+ .|+|... +... .+|.|.- ...+.+++|+|+|+.+|++
T Consensus 81 ~~A~~iAd~ll~~Q~~---~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~a 157 (408)
T 1r76_A 81 KAARHVADVIVSFQTP---AGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRF 157 (408)
T ss_dssp HHHHHHHHHHHHHCCT---TSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHcccc---CCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHH
Confidence 5689999999999999 6999663 1111 1122210 1124568999999999999
Q ss_pred HHHhccC-CccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhh
Q 031897 85 CLHFSMM-RPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIE 141 (151)
Q Consensus 85 L~~~~~~-~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~ 141 (151)
|..+... .+ ...+...++++||++||++||++||||++|+++| ..++++|+|.+
T Consensus 158 L~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~IpFnD 212 (408)
T 1r76_A 158 LAQVVSQLAP--EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAITYND 212 (408)
T ss_dssp HHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEECGG
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCCcCc
Confidence 9997542 10 0223468899999999999999999999999999 69999997655
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.50 E-value=1.2e-14 Score=120.10 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=74.2
Q ss_pred HHHHHHhhccCCCCCCCcccc--cCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHH
Q 031897 34 AHDFLKASQVTDNPQGDFRSM--FRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNC 111 (151)
Q Consensus 34 A~~~L~~~Q~~~~~~G~~~~~--~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~ 111 (151)
.++-|+.-|.+ .|+|... +.....+. ...+..++|.|+|+.+|++|.++.... ..+..+++++||++|
T Consensus 36 ~Ad~~l~~Q~~---~GGW~kn~d~~~~~~~~---~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~w 105 (332)
T 1gxm_A 36 RADVVLSYQQN---NGGWPKNLDYNSVGNGG---GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANF 105 (332)
T ss_dssp GHHHHHHTCCT---TSCCCSCCCTTTCCCCC---CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcC---CCCCCcceecccccccC---CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHH
Confidence 47888899998 6999764 32221111 112456799999999999999875311 223468999999999
Q ss_pred HHhcccCCCCccccCCCCcchhhhccChhh
Q 031897 112 ILSLQSETGGVPAWEPTGAPSWLELLNPIE 141 (151)
Q Consensus 112 Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~ 141 (151)
|++||++||||++|++++ ..++++|||.+
T Consensus 106 lL~mQ~~nGGWpqFdpd~-~~Yl~~IpFnD 134 (332)
T 1gxm_A 106 LVNSQYSTGALPQFYPLK-GGYSDHATFND 134 (332)
T ss_dssp HHHHCCTTSCCBSEESCC-SGGGGSEECGG
T ss_pred HHhccCCCCCccccCCCc-ccccccCCcch
Confidence 999999999999999987 89999997655
No 6
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.31 E-value=7.2e-12 Score=112.82 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIG---PILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~---~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
..++.|++++.||..+|.....+ +.|+||++||+++|.+ +|+|.+.+..+....| .....+++..|++||
T Consensus 584 ~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~---DGGWge~~~s~~~~~y----~~~~~s~v~~TAwAL 656 (732)
T 1w6k_A 584 CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMA---DGGWGEDFESCEERRY----VQSAQSQIHNTCWAM 656 (732)
T ss_dssp SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCT---TSCCCBCTHHHHHTSC----CBCSSCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhccc---CCCCCCCCcccccccc----CCCCCCCHHHHHHHH
Confidence 45789999999999999864312 7999999999999998 5788653211110111 112246788999999
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+||+.++. .+.+.++++++||+++|++||||..-
T Consensus 657 lALl~ag~---------~~~~~i~r~v~wL~~~Q~~~Ggf~~~ 690 (732)
T 1w6k_A 657 MGLMAVRH---------PDIEAQERGVRCLLEKQLPNGDWPQE 690 (732)
T ss_dssp HHHHHTTC---------SCHHHHHHHHHHHHHHCCTTSCCCCC
T ss_pred HHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccCC
Confidence 99998753 26789999999999999999999943
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.10 E-value=5e-11 Score=101.84 Aligned_cols=93 Identities=15% Similarity=0.023 Sum_probs=70.3
Q ss_pred CChhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 6 SQTWDCALAIQALLACNLT--DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~--~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
..+..|..|+++|...|.. .+ ...++||++||++.|.+ +|+|... .|+ ..|+--|..|+.
T Consensus 148 ~~i~~T~~Al~aL~~lg~~~~~~-~i~i~kav~~L~s~Q~~---DGsf~~~-------~~G-------e~d~~~ty~A~~ 209 (437)
T 2h6f_B 148 PHLAPTYAAVNALCIIGTEEAYD-IINREKLLQYLYSLKQP---DGSFLMH-------VGG-------EVDVRSAYCAAS 209 (437)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHT-TSCHHHHHHHHHTTBCT---TSCBBSS-------TTC-------CBSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCccccc-chHHHHHHHHHHHhCCC---CCCeeec-------CCC-------CccchhHHHHHH
Confidence 5678899999999999964 11 23589999999999998 5777511 132 345556777777
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+|..++. .+.+.++++++||+++||+||||+.-
T Consensus 210 ~L~llg~---------~~~~~v~k~~~~L~s~Q~~DGGwg~~ 242 (437)
T 2h6f_B 210 VASLTNI---------ITPDLFEGTAEWIARCQNWEGGIGGV 242 (437)
T ss_dssp HHHHTTC---------CCTTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred HHHHhCC---------CChHHHHHHHHHHHHccCCCCCcCCC
Confidence 7777642 24567899999999999999999864
No 8
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.06 E-value=8e-11 Score=97.22 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=78.7
Q ss_pred CChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 6 SQTWDCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.++-+|+.++++|+.+.. .+.|+.++.||++||+++|.+ +|+|.-.++.. ++|. ..- .+.| |.|+.+|
T Consensus 71 ~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~---nGGWpqFdpd~--~~Yl--~~I-pFnD-DvtarvL 141 (332)
T 1gxm_A 71 IDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYS---TGALPQFYPLK--GGYS--DHA-TFND-NGMAYAL 141 (332)
T ss_dssp CGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCT---TSCCBSEESCC--SGGG--GSE-ECGG-GHHHHHH
T ss_pred ccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCC---CCCccccCCCc--cccc--ccC-Ccch-HHHHHHH
Confidence 356689999999988643 234789999999999999999 59998777653 3222 111 1344 8899999
Q ss_pred HHHHHhccCCccccC-------CCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 83 LCCLHFSMMRPEIVG-------EKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g-------~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
..|..+.+......| .....++++|||+||++.|.++|||
T Consensus 142 elL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw 188 (332)
T 1gxm_A 142 TVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGV 188 (332)
T ss_dssp HHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTE
T ss_pred HHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCC
Confidence 999998642110000 0235689999999999999999988
No 9
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.02 E-value=5.4e-10 Score=95.47 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+..|-+-+++.||.-.|...+ ...++|+++||++.|.+ +|+|.. +.| +.+.+.+|..||.+|
T Consensus 99 ~r~~l~y~~l~aL~lLg~~~~-~~~~~r~v~~l~s~Q~~---dGGf~g-------~~~-------~~~~i~~T~~Al~aL 160 (437)
T 2h6f_B 99 SRPWLCYWILHSLELLDEPIP-QIVATDVCQFLELCQSP---EGGFGG-------GPG-------QYPHLAPTYAAVNAL 160 (437)
T ss_dssp CHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHBCT---TSSBBS-------STT-------CCBCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCC---CCCcCC-------ccC-------CCcchhHHHHHHHHH
Confidence 455777778999998896544 57899999999999998 577751 012 235677999999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
..++... ..+...++++++||+++|++||||...
T Consensus 161 ~~lg~~~------~~~~i~i~kav~~L~s~Q~~DGsf~~~ 194 (437)
T 2h6f_B 161 CIIGTEE------AYDIINREKLLQYLYSLKQPDGSFLMH 194 (437)
T ss_dssp HHHCCHH------HHTTSCHHHHHHHHHTTBCTTSCBBSS
T ss_pred HHhCCcc------cccchHHHHHHHHHHHhCCCCCCeeec
Confidence 9986310 012234889999999999999999853
No 10
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.01 E-value=1.9e-10 Score=97.25 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCC------CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897 7 QTWDCALAIQALLACNLT------DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~------~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
++-+|+.++++|+.+... +.|+..+.||++||+++|.+ +|+|.-.++.. ++|. ..- .+.| |.|+.
T Consensus 147 DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~---nGGWpqFdpdn--~~y~--~~I-pFnD-Dvt~r 217 (408)
T 1r76_A 147 DNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFP---NGGWPQVWPLE--GGYH--DAI-TYND-DALVH 217 (408)
T ss_dssp GGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCT---TSCCBSBSSCC--CGGG--GSE-ECGG-GHHHH
T ss_pred CCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCC---CCCCcCcCccc--cccc--cCC-CcCc-HHHHH
Confidence 456899999999886432 23889999999999999999 58998777654 2222 111 1344 88999
Q ss_pred HHHHHHHhccCCc--cccC---CCCCHHHHHHHHHHHHhcccC-CCCccccCC
Q 031897 81 ALLCCLHFSMMRP--EIVG---EKMEPERFYDAVNCILSLQSE-TGGVPAWEP 127 (151)
Q Consensus 81 al~aL~~~~~~~~--~~~g---~~~~~~~l~rav~~Ll~~Qn~-dGGW~~~~~ 127 (151)
+|..|..+..... ..+. +....++++|||+||+..|.+ ||.|..+..
T Consensus 218 vle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~ 270 (408)
T 1r76_A 218 VAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQ 270 (408)
T ss_dssp HHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred HHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcccchhc
Confidence 9999988864110 0000 013568999999999999999 999986543
No 11
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.96 E-value=1.3e-09 Score=91.52 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=70.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++-.|..|+++|+..|...+ ....+++++||++.|.+ +|+|.... .|+ -.|+--|-.|+.+|
T Consensus 120 ~~v~~T~~Al~~L~~lg~~~~-~id~~~~~~fL~~~Q~~---DGSf~g~~------~wG-------e~DirftY~Al~~l 182 (377)
T 1n4q_B 120 GHIAMTYTGLSCLIILGDDLS-RVDKEACLAGLRALQLE---DGSFCAVP------EGS-------ENDMRFVYCASCIC 182 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCCST-TSCHHHHHHHHHHHBCT---TSCBCSST------TCC-------CCBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHHhcCC---CCCeeecc------CCC-------cchhHHHHHHHHHH
Confidence 679999999999999985433 23458999999999998 58876110 243 23344566777777
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
..++. .....++++++||+++||.||||+.-.
T Consensus 183 ~llg~---------~~~~~v~ka~~fL~scQn~DGGfGe~p 214 (377)
T 1n4q_B 183 YMLNN---------WSGMDMKKAISYIRRSMSYDNGLAQGA 214 (377)
T ss_dssp HHTTC---------GGGSCHHHHHHHHHHTBCTTSSBBSST
T ss_pred HHhcC---------CChHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 77642 245568999999999999999999753
No 12
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.91 E-value=2.7e-09 Score=88.02 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=70.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+++-.|..|+++|+..+.-+ .-.++|+++||++.|.+ +|+|... -|+ -+|+-.|-.|+.+|
T Consensus 93 ~~l~~Ty~Al~~L~~l~~~~--~id~~k~~~fL~~~Q~~---DGsf~~~-------~~g-------e~d~~~ty~Al~~L 153 (331)
T 3dss_B 93 PHLLYTLSAVQILTLYDSIH--VINVDKVVAYVQSLQKE---DGSFAGD-------IWG-------EIDTRFSFCAVATL 153 (331)
T ss_dssp BCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHHTBCT---TSCBBSS-------TTC-------CBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCcc--HHHHHHHHHHHhccCCC---CCCEecc-------cCC-------CCchHHHHHHHHHH
Confidence 56788999999999887422 22389999999999998 5777511 122 24566688899999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
..++. .+...++++++||+++|++||||+.-.
T Consensus 154 ~llg~---------~~~~~~~k~v~~L~s~Q~~dGGfg~~p 185 (331)
T 3dss_B 154 ALLGK---------LDAINVEKAIEFVLSCMNFDGGFGCRP 185 (331)
T ss_dssp HHHTC---------GGGSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred HhcCC---------CCHHHHHHHHHHHHHhCcCCCCcCCCC
Confidence 88753 134568999999999999999999764
No 13
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.86 E-value=2.9e-09 Score=87.88 Aligned_cols=90 Identities=14% Similarity=-0.036 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
++.-|..|+.+|...|..+ ...++|+++||+++|.. +|+|.+ +. ...++.-.|.+|+.+|.
T Consensus 142 d~~~ty~Al~~L~llg~~~--~~~~~k~v~~L~s~Q~~---dGGfg~------------~p--g~esh~~~T~~al~aL~ 202 (331)
T 3dss_B 142 DTRFSFCAVATLALLGKLD--AINVEKAIEFVLSCMNF---DGGFGC------------RP--GSESHAGQIYCCTGFLA 202 (331)
T ss_dssp CHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHTTBCT---TSCBCS------------ST--TCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCcC---CCCcCC------------CC--CCCCcHHHHHHHHHHHH
Confidence 4566777888888888643 45699999999999997 566651 11 11345557999999999
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.++.. +...++++++||++.|++||||.-
T Consensus 203 llg~~---------~~~~~~~~~~wL~~~Q~~dGGf~g 231 (331)
T 3dss_B 203 ITSQL---------HQVNSDLLGWWLCERQLPSGGLNG 231 (331)
T ss_dssp HTTCG---------GGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred hcccc---------chhhHHHHHHHHHHhCCCCCCcCC
Confidence 88642 223488999999999999999974
No 14
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.81 E-value=1.3e-08 Score=88.46 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHHHcCCCC---Ccc---HHHHHHHHHHHhhccCCCCCCCcccccCCCCCc-cccccCCCCCcccccc
Q 031897 5 GSQTWDCALAIQALLACNLTD---EIG---PILMKAHDFLKASQVTDNPQGDFRSMFRHISKG-GWTFSNKDHGWQVSDC 77 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~---~~~---~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~G-gW~fs~~~~~~pd~d~ 77 (151)
.+++..|..|+++|+-.|... .+. ..++++++||++.|.+ +|+|. | .|+ -.|+--
T Consensus 137 ~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~---DGSF~--------g~~wG-------e~Dir~ 198 (520)
T 3q7a_B 137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRP---DGGFV--------VCEGG-------EVDVRG 198 (520)
T ss_dssp CCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCT---TSCBB--------SSTTC-------CBCHHH
T ss_pred CCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCC---CCCEe--------cCCCC-------CchHHH
Confidence 467999999999999998641 111 1267999999999998 58876 3 243 234556
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
|-.|+.+|..++. ...+.++++++||+++||.||||+.
T Consensus 199 TY~Al~~L~lLg~---------~~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 199 TYCLLVVATLLDI---------ITPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccC
Confidence 7788888887752 3678899999999999999999997
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.76 E-value=1.5e-08 Score=80.73 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-hccCCCCCCCcccccCCCC---CccccccCCCCCcccccch
Q 031897 5 GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKA-SQVTDNPQGDFRSMFRHIS---KGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~T 78 (151)
.+.+|.|++++.+|..+.. ..+ .+.|+||++||++ +|.+ +|.|.+..+-.. .|++. ....+++.-|
T Consensus 64 ~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~---dG~f~~~~~~~~~~~~g~~~----~~~~~~~~lt 135 (277)
T 1qqf_A 64 PPSTWLTAYVSRVFSLAANLIAID-SQVLCGAVKWLILEKQKP---DGVFQEDGPVIHQEMIGGFR----NTKEADVSLT 135 (277)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCT---TSCBCCSSCCSCGGGGGGGG----SCTTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccCC---CCCccCCccccchhhcCCCC----CCccCccchH
Confidence 3679999999999999874 223 5799999999995 9998 588863221000 23221 0002345669
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~ 118 (151)
+.+|.+|...++... -+.+...+.+++|++||.+.|++
T Consensus 136 a~vl~aL~~~~~~~~--~~~~~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 136 AFVLIALQEARDICE--GQVNSLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp HHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhccc--cCCCchHHHHHHHHHHHHHHhcc
Confidence 999999998743100 02334578999999999999885
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.72 E-value=2e-08 Score=81.34 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-hccCCCCCCCcccccCCCC---CccccccCCCCCcccccch
Q 031897 5 GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKA-SQVTDNPQGDFRSMFRHIS---KGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~T 78 (151)
.+.+|.|++++.+|..+.. ..+ .+.|+||++||++ +|.+ +|.|.+..+-.. .|++. ....+++..|
T Consensus 80 ~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~---dGsf~~~~~~~~~~~~g~~~----~~~~~~~~~t 151 (310)
T 2wy7_A 80 APSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKP---DGVFQEDAPVIHQEMIGGLR----NNNEKDMALT 151 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCT---TSCBCCSSCCSCGGGGGGGT----TCSCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCC---CCccccCCCccCHhhcCCcc----cccccccchH
Confidence 3679999999999999874 223 5789999999996 9998 588763221111 23321 0002345669
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~ 118 (151)
+.+|.+|...++... -+.+...+++++|++||.+.|++
T Consensus 152 a~vl~aL~~~~~~~~--~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 152 AFVLISLQEAKDICE--EQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp HHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcccccc--cCCcchHHHHHHHHHHHHHHhhc
Confidence 999999998743100 02334578999999999999885
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.71 E-value=5.3e-08 Score=80.83 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCC----CC----CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 12 ALAIQALLACNL----TD----EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 12 ala~~AL~~~G~----~~----~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
-++..+|...+. ++ +....|+++++||++.|.+ +|+|+ .|. . ..++...|+.++.
T Consensus 66 ~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~---dGgf~---------~~~--~---~~~~~~lTa~v~~ 128 (367)
T 1hzf_A 66 LAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKA---DGSYA---------AWL--S---RDSSTWLTAFVLK 128 (367)
T ss_dssp HHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCT---TSCBC---------SST--T---SCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCC---CCCee---------ccC--C---CCCcHHHHHHHHH
Confidence 355666665543 22 1355799999999999998 56653 121 1 1235567999999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+|..+.+. ..++.+.++||++||++.|++||+|..-
T Consensus 129 ~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 129 VLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 99998752 2467899999999999999999999764
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.56 E-value=3.2e-07 Score=72.91 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHH
Q 031897 28 GPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYD 107 (151)
Q Consensus 28 ~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~r 107 (151)
...|++++++|++.|++ +|+|+ .|. ...++...|+.++++|..+.+. + .++.+.+++
T Consensus 37 ~~~i~~g~~~~l~~q~~---dGgf~---------~f~-----~~~~s~wlTa~v~~~l~~a~~~-----~-~v~~~~i~~ 93 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQP---ISAYA---------AFN-----NRPPSTWLTAYVSRVFSLAANL-----I-AIDSQVLCG 93 (277)
T ss_dssp HHHHHHHHHHHHTTBCT---TSCBC---------SST-----TSCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---CCCcc---------ccC-----CCCccHHHHHHHHHHHHHHhhc-----C-CCCHHHHHH
Confidence 45699999999999998 56653 111 1245677899999999998642 1 468899999
Q ss_pred HHHHHHh-cccCCCCccccCC
Q 031897 108 AVNCILS-LQSETGGVPAWEP 127 (151)
Q Consensus 108 av~~Ll~-~Qn~dGGW~~~~~ 127 (151)
+++||++ .|++||+|....+
T Consensus 94 a~~~L~~~~Q~~dG~f~~~~~ 114 (277)
T 1qqf_A 94 AVKWLILEKQKPDGVFQEDGP 114 (277)
T ss_dssp HHHHHHHHHBCTTSCBCCSSC
T ss_pred HHHHHHHhccCCCCCccCCcc
Confidence 9999996 9999999976543
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.54 E-value=9e-08 Score=79.44 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccC---CCCCccccccCCCCCcccccchHH
Q 031897 6 SQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFR---HISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~---~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
+..|-|++++.+|..++. ..+ .+.|+||++||+++|.+ +|+|.+..+ ....||+. ...++++.||+
T Consensus 118 ~~~~lTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~Q~~---dG~~~~~~~~~~~~~~gg~~-----~~~~~~~lTA~ 188 (367)
T 1hzf_A 118 SSTWLTAFVLKVLSLAQEQVGGS-PEKLQETSNWLLSQQQA---DGSFQDPCPVLDRSMQGGLV-----GNDETVALTAF 188 (367)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCCC-HHHHHHHHHHHGGGBCT---TSCBCCSSCCSCGGGGGGGS-----STTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhcc---CCCcccccccccccccCCCC-----CCcccccchHH
Confidence 578999999999999873 333 68999999999999998 688875321 11123321 11246778999
Q ss_pred HHHHHHHhccCCccccCC---CCCHHHHHHHHHHHHhc
Q 031897 81 ALLCCLHFSMMRPEIVGE---KMEPERFYDAVNCILSL 115 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~---~~~~~~l~rav~~Ll~~ 115 (151)
+|.||...+....+.... ....++|+||++||++.
T Consensus 189 vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 189 VTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp HHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 999999865321000000 01346899999999776
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.52 E-value=4.7e-07 Score=73.21 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHH
Q 031897 28 GPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYD 107 (151)
Q Consensus 28 ~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~r 107 (151)
...|++++++|++.|.+ +|+|+ .|. ...++...|+.++++|..+.+. + .++.+.+++
T Consensus 53 ~~~i~~g~~~~l~~q~~---dGgf~---------~f~-----~~~~s~wlTa~v~~~l~~a~~~-----~-~v~~~~i~~ 109 (310)
T 2wy7_A 53 LELIKKGYTQQLAFRQP---SSAFA---------AFV-----KRAPSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCG 109 (310)
T ss_dssp HHHHHHHHHHHHTTBCT---TSCBC---------SST-----TSCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---CCCcc---------cCC-----CCCccHHHHHHHHHHHHHHHhc-----C-CCCHHHHHH
Confidence 35799999999999998 56653 121 1245677899999999998642 1 467899999
Q ss_pred HHHHHHh-cccCCCCccccCC
Q 031897 108 AVNCILS-LQSETGGVPAWEP 127 (151)
Q Consensus 108 av~~Ll~-~Qn~dGGW~~~~~ 127 (151)
|++||++ .|++||+|....+
T Consensus 110 a~~~L~~~~Q~~dGsf~~~~~ 130 (310)
T 2wy7_A 110 AVKWLILEKQKPDGVFQEDAP 130 (310)
T ss_dssp HHHHHHHHHBCTTSCBCCSSC
T ss_pred HHHHHHHhhcCCCCccccCCC
Confidence 9999996 9999999976554
No 21
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.44 E-value=7.3e-07 Score=77.49 Aligned_cols=101 Identities=10% Similarity=-0.005 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.+.+|=.=+++.+|.-.|...+ ....+++++||++.|++ +|+|. ++.. ...+|.+-+|-.||.+
T Consensus 86 asr~wl~Yw~l~aL~LLg~~ld-~~~~~~~I~~Ils~Q~~---dGGFg---------g~p~---~~~~~hla~TysAV~a 149 (520)
T 3q7a_B 86 ASRPWLVFWTVHSLDLLGVALD-QGTKDRVVSTLLHFLSP---KGGFG---------GGPA---NSQIPHLLPTYASVCS 149 (520)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHTTBCT---TSSBC---------SSCT---TTSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCC---CCCCC---------CCCC---CCCCCcHHHHHHHHHH
Confidence 4567888889999999996554 56789999999999998 46653 2110 0225778899999999
Q ss_pred HHHhccCCccccCCCCCHHH--HHHHHHHHHhcccCCCCccc
Q 031897 85 CLHFSMMRPEIVGEKMEPER--FYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~--l~rav~~Ll~~Qn~dGGW~~ 124 (151)
|..++..+++ .....-. .+++++||+++|++||||.-
T Consensus 150 L~ilg~~~p~---~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 150 LAIAGNDSST---GGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHCBSSTT---SBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHhCccccc---hhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 9999753210 1111112 67899999999999999964
No 22
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.42 E-value=3.5e-07 Score=76.69 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCC------CCCCcccccCCCCCcccccc----CCCCCccc
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDN------PQGDFRSMFRHISKGGWTFS----NKDHGWQV 74 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~------~~G~~~~~~~~~~~GgW~fs----~~~~~~pd 74 (151)
.+.+|-+=+++.+|.-.|..+... .+++++||++.|...+ .+|+|.....+..+-. .+. .....+|.
T Consensus 45 ~~r~~~~yw~l~~L~lLg~l~~~~--~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~-d~~~~~~~~~~d~~~ 121 (377)
T 1n4q_B 45 TSRLTIAFFALSGLDMLDSLDVVN--KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFN-PSKNPGTAHPYDSGH 121 (377)
T ss_dssp GGHHHHHHHHHHHHHHTTCGGGSC--HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCC-SSCSCCCCCTTCCCC
T ss_pred cchHHHHHHHHHHHHHhCCCCccC--HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChh-hhccccccccCCCCC
Confidence 467888999999999998633322 7899999999999210 1355432211100000 000 00011477
Q ss_pred ccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 75 SDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 75 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
+.+|..||.+|..++... +....+++++||+++|++||||..
T Consensus 122 v~~T~~Al~~L~~lg~~~--------~~id~~~~~~fL~~~Q~~DGSf~g 163 (377)
T 1n4q_B 122 IAMTYTGLSCLIILGDDL--------SRVDKEACLAGLRALQLEDGSFCA 163 (377)
T ss_dssp HHHHHHHHHHHHHTTCCS--------TTSCHHHHHHHHHHHBCTTSCBCS
T ss_pred HHHHHHHHHHHHHhCccc--------chhhHHHHHHHHHHhcCCCCCeee
Confidence 899999999999986422 222247899999999999999975
No 23
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.40 E-value=7.9e-07 Score=75.39 Aligned_cols=90 Identities=16% Similarity=0.035 Sum_probs=64.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
....+..+|+++||+..|.... .+.+..|+..|.. + .+. .|+ +-++|.||+|++|
T Consensus 133 ~tn~Yq~sL~vLALC~~g~~v~-----~~~v~~Ll~~~~~---~-~~~-------~g~---------~~sVDT~AMA~lA 187 (414)
T 2bb6_A 133 RTSYYQYSLGILALCVHQKRVH-----DSVVGKLLYAVEH---K-PHL-------LQD---------HVSVDTMAMAGMA 187 (414)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHS---S-SCS-------CCT---------TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHhhc---c-CcC-------CCC---------cccccHHHHHHHH
Confidence 4556899999999999997654 3456666665553 1 111 132 2379999999999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHH----HHHHhcccCCCCcc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAV----NCILSLQSETGGVP 123 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav----~~Ll~~Qn~dGGW~ 123 (151)
|..+.+... .+...+.|.+|+ .+|++.|++||+|+
T Consensus 188 L~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG 226 (414)
T 2bb6_A 188 FSCLELSNL----NPKQRNRINLALKRVQEKILKAQTPEGYFG 226 (414)
T ss_dssp HHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCTTSCBS
T ss_pred HHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 999975321 123467788888 77788899999997
No 24
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.26 E-value=2.5e-06 Score=72.30 Aligned_cols=85 Identities=14% Similarity=-0.009 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHHcCCC---CCccHHHHHHH----HHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccch
Q 031897 6 SQTWDCALAIQALLACNLT---DEIGPILMKAH----DFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~---~~~~~~i~rA~----~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (151)
..|..||+|++||...+.. +..++.|.+|+ ++|+++|.+ +|.|+ ++-.|
T Consensus 176 ~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~---dG~FG---------------------N~~ST 231 (414)
T 2bb6_A 176 VSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTP---EGYFG---------------------NVYST 231 (414)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCT---TSCBS---------------------STTTH
T ss_pred ccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcC---CCCcc---------------------chhhH
Confidence 3588999999999887642 23367888888 666677887 45432 12249
Q ss_pred HHHHHHHHHhccCCccccCCCCCH--HHHHHHHHHHHhcccCCCCcc
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEP--ERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~--~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
+.||+||..... +... -...+++++|++ |++||+|.
T Consensus 232 ~lA~QAL~~~~~--------~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 232 PLALQLLMGSLR--------PSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHTTCSS--------CCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHhcCC--------CcccccchHHHHHHHHHH-hccCCCCC
Confidence 999999998743 2122 367789999999 99999997
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.26 E-value=2.2e-06 Score=82.19 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=67.2
Q ss_pred CChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCc-ccccchHHHH
Q 031897 6 SQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGW-QVSDCTAEAL 82 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~-pd~d~Ta~al 82 (151)
+..|-||+++.+|+.+.. ..+ .+.|+||++||+++|.+ +|.|.+. |.|-......|. .++..||.+|
T Consensus 1014 ~s~wlTAyv~~~l~~a~~~~~v~-~~~l~~a~~wL~~~Q~~---dG~f~~~------g~~~~~~m~gg~~~~~~lTAyvl 1083 (1451)
T 4acq_A 1014 GNTWLTAFVLKTFAQARAYIFID-EAHITQALIWLSQRQKD---NGCFRSS------GSLLNNAIKGGVEDEVTLSAYIT 1083 (1451)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCC-THHHHHHHHHHHHTEET---TTEECCC------CCCSCGGGCCSCSCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhhhcccC-HHHHHHHHHHHHhhccc---CCccccc------CcccchhhcCCCCCCccchHHHH
Confidence 689999999999998863 223 68999999999999987 5877632 333221111111 3456799999
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
.||+.++. +...+++++|++||.+.
T Consensus 1084 ~aL~~~g~--------~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1084 IALLEIPL--------TVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHTTC--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCC--------CCCCHHHHHHHHHHHHh
Confidence 99998743 34568999999999865
No 26
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.02 E-value=7.6e-06 Score=78.45 Aligned_cols=79 Identities=10% Similarity=-0.041 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHH
Q 031897 29 PILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDA 108 (151)
Q Consensus 29 ~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ra 108 (151)
..|+++++||++.|.. +|+|+ .|.-.. .+..++...||+++.+|..+.+. ..++.+.+++|
T Consensus 983 ~~i~~g~~~ll~~q~~---dGgf~---------~f~~~~-~~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~l~~a 1043 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHY---DGSYS---------TFGERY-GRNQGNTWLTAFVLKTFAQARAY------IFIDEAHITQA 1043 (1451)
T ss_dssp HHHHHHHHHHGGGBCT---TSCBC---------SSTTGG-GCCCCCHHHHHHHHHHHHHHTTT------SCCCTHHHHHH
T ss_pred HHHHHHHHHHHhhcCC---CCCee---------eccCCC-CCCCCchhHHHHHHHHHHHhhhh------cccCHHHHHHH
Confidence 3478999999999998 46653 121000 01235667899999999998642 25688999999
Q ss_pred HHHHHhcccCCCCccccC
Q 031897 109 VNCILSLQSETGGVPAWE 126 (151)
Q Consensus 109 v~~Ll~~Qn~dGGW~~~~ 126 (151)
++||++.|++||+|....
T Consensus 1044 ~~wL~~~Q~~dG~f~~~g 1061 (1451)
T 4acq_A 1044 LIWLSQRQKDNGCFRSSG 1061 (1451)
T ss_dssp HHHHHHTEETTTEECCCC
T ss_pred HHHHHhhcccCCcccccC
Confidence 999999999999998654
No 27
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.97 E-value=1.8e-05 Score=72.57 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-hccCCCCCCCcccccC--C-CCCccccccCCCCCcccccch
Q 031897 5 GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKA-SQVTDNPQGDFRSMFR--H-ISKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~~~~~~--~-~~~GgW~fs~~~~~~pd~d~T 78 (151)
.+..|.||+++..|..+.. ..+ ...|++|++||++ +|.. +|.|.+..+ + ...||+.- ...++...|
T Consensus 325 ~~s~wlTAyv~~~l~~a~~~~~v~-~~~i~~al~~L~~~~Q~~---dG~f~~~~~~~~~~m~gg~~~----~~~~~~~lt 396 (915)
T 2hr0_B 325 APSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKP---DGVFQEDAPVIHQEMIGGLRN----NNEKDMALT 396 (915)
T ss_dssp CBCHHHHHHHHHHHHTTTTTSCCC-HHHHHHHHHHHHHHHBCT---TSCBCCCSCCSSSCCCCSCCC----CTTHHHHHH
T ss_pred CCcceehHHHHHHHHHhhhcCCCC-HHHHHHHHHHHHHhhccC---CCccccCccccchhhcCCccC----ccccccccH
Confidence 3578999999999999862 222 5789999999995 8987 577753210 1 11222210 001345678
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~ 118 (151)
|++|.+|...++... -+.+...+++++|++||.+.|+.
T Consensus 397 Ayvl~aL~~~g~~~~--~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 397 AFVLISLQEAKDICE--EQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp HHHHHHHHHHTTTST--TTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcccccc--cCcccchHHHHHHHHHHHHhhhc
Confidence 999999998754210 02233577999999999998765
No 28
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.94 E-value=4.8e-06 Score=70.28 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHcCC---CC---C----ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccc
Q 031897 6 SQTWDCALAIQALLACNL---TD---E----IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVS 75 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~---~~---~----~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~ 75 (151)
..|..+|+|++||..... .. . +...|++++++|+++|.+ +|.|+ +.
T Consensus 150 ~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~---dG~fG---------------------n~ 205 (399)
T 2pmv_A 150 FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKD---NGIIG---------------------DI 205 (399)
T ss_dssp CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCT---TSCBS---------------------SH
T ss_pred ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcC---CCccc---------------------cc
Confidence 357889999999987654 11 2 467788889999888987 45432 33
Q ss_pred cchHHHHHHHHHhccCCccccCCCCCHH-HHHHHHHHHHhcccCCCCcc
Q 031897 76 DCTAEALLCCLHFSMMRPEIVGEKMEPE-RFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 76 d~Ta~al~aL~~~~~~~~~~~g~~~~~~-~l~rav~~Ll~~Qn~dGGW~ 123 (151)
-.|+.||+||......+ ..+ ...++++||++ |.+||+|.
T Consensus 206 yST~LA~QAL~~~~~~~--------~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 206 YSTGLAMQALSVTPEPS--------KKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHHHHHCSSCC--------SSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred ccHHHHHHHHHhcCCCc--------cccccHHHHHHHHHH-HhhCCCcC
Confidence 45999999999975321 224 57789999999 99999996
No 29
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.87 E-value=2.8e-05 Score=73.54 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCCC-C----ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 11 CALAIQALLACNLTD-E----IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 11 Tala~~AL~~~G~~~-~----~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
..++..-|.+.+.-. + ....|++++++|++.|.. +|+|+ .| . ...++...|+.++.+|
T Consensus 849 ~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~---dGgf~---------~f--~---~~~~s~~lTa~v~~~l 911 (1325)
T 2pn5_A 849 NILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQT---DGSFG---------LW--E---TTNGSVFLTAFVGTSM 911 (1325)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCT---TSCBC---------SS--S---SSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC---CCCee---------cc--C---CCCCCeeehHHHHHHH
Confidence 334444455555321 1 234588899999999998 56654 11 1 1235667899999999
Q ss_pred HHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 86 LHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
..+.+ .+..++.+.+++|++||++.|++||.|..
T Consensus 912 ~~a~~-----~~~~v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 912 QTAVK-----YISDIDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp HHHTT-----TCSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred HHHHh-----hEEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence 99864 24457889999999999999999999854
No 30
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=2e-05 Score=74.52 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCC---CCccccccCCCCCcccccch
Q 031897 5 GSQTWDCALAIQALLAC---NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHI---SKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~---G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~---~~GgW~fs~~~~~~pd~d~T 78 (151)
.+..|-|++++.+|..+ |..-+ .+.++||++||++.|.+ +|.|.+..+-. ..|+|. .+..-|
T Consensus 898 ~~s~~lTa~v~~~l~~a~~~~~~v~-~~~l~~a~~~L~~~q~~---dG~f~~~~~~~~~~~~g~~~--------~~~~~t 965 (1325)
T 2pn5_A 898 NGSVFLTAFVGTSMQTAVKYISDID-AAMVEKALDWLASKQHF---SGRFDKAGAEYHKEMQGGLR--------NGVALT 965 (1325)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCSCSC-HHHHHHHHHHHHHTCCT---TSCCCCCSCCSCHHHHCCSS--------TTHHHH
T ss_pred CCCeeehHHHHHHHHHHHhhEEcCC-HHHHHHHHHHHHhhhcc---CCCccccccccChhhcCccc--------CCcccc
Confidence 46789999999999987 43223 57899999999999987 57775321100 123332 123347
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccC-CCCcc
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE-TGGVP 123 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~-dGGW~ 123 (151)
+.+|.+|+..++.. ......+++|++||.+.|+. +++|+
T Consensus 966 ayvl~aL~~~g~~~------~~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 966 SYVLMALLENDIAK------AKHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp HHHHHHHHTCHHHH------HHTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred HHHHHHHhhCcccc------cccHHHHHHHHHHHHHhhcccCCHHH
Confidence 88888887653211 01346799999999999887 78884
No 31
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.73 E-value=7.7e-05 Score=68.41 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHH
Q 031897 29 PILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDA 108 (151)
Q Consensus 29 ~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ra 108 (151)
..|++++++|++.|.. +|+|+ -|. ...++...||+++.+|..+.+. + .++...+++|
T Consensus 299 ~~i~~g~~rll~~Q~~---DGsfs---------~w~-----~~~~s~wlTAyv~~~l~~a~~~-----~-~v~~~~i~~a 355 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQP---SSAFA---------AFV-----KRAPSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCGA 355 (915)
T ss_dssp HHHHHHHHHHGGGCCT---TTCCB---------SSS-----SSCBCHHHHHHHHHHHHTTTTT-----S-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC---CCCcc---------ccC-----CCCCcceehHHHHHHHHHhhhc-----C-CCCHHHHHHH
Confidence 4678899999999998 56654 121 1235667899999999998641 2 5788999999
Q ss_pred HHHHHh-cccCCCCccccC
Q 031897 109 VNCILS-LQSETGGVPAWE 126 (151)
Q Consensus 109 v~~Ll~-~Qn~dGGW~~~~ 126 (151)
++||++ .|++||+|....
T Consensus 356 l~~L~~~~Q~~dG~f~~~~ 374 (915)
T 2hr0_B 356 VKWLILEKQKPDGVFQEDA 374 (915)
T ss_dssp HHHHHHHHBCTTSCBCCCS
T ss_pred HHHHHHhhccCCCccccCc
Confidence 999995 999999997654
No 32
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.60 E-value=6.6e-05 Score=63.37 Aligned_cols=89 Identities=18% Similarity=0.024 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
...+.-||+++||+..|.. .-.+.+.-|...|..+ |+ .-++|.+|+|++||
T Consensus 112 t~~Yq~sL~vLALC~~~~~-----v~~~~v~kLl~~~~~~---g~---------------------~~sVDT~AMa~LAL 162 (399)
T 2pmv_A 112 SAFYGPSLAILALCQKNSE-----ATLPIAVRFAKTLLAN---SS---------------------PFNVDTGAMATLAL 162 (399)
T ss_dssp GGGHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHC---CS---------------------CCCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHcc---CC---------------------cccchHHHHHHHHH
Confidence 3458899999999999953 3455555555555542 21 12689999999999
Q ss_pred HHhcc---CCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 86 LHFSM---MRPEIVGEKMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 86 ~~~~~---~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
.-+.+ ...+...+.....+|++.+.+|++.|++||+|+
T Consensus 163 ~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 163 TCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99875 110000000126789999999999999999998
No 33
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.05 E-value=0.0013 Score=55.39 Aligned_cols=116 Identities=18% Similarity=0.073 Sum_probs=63.0
Q ss_pred CCChhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhccCCCC-CCCcccccCCC-CCccccccCCCCCcccccchHHH
Q 031897 5 GSQTWDCALAIQALLACNLTD-EIGPILMKAHDFLKASQVTDNP-QGDFRSMFRHI-SKGGWTFSNKDHGWQVSDCTAEA 81 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~-~~~~~i~rA~~~L~~~Q~~~~~-~G~~~~~~~~~-~~GgW~fs~~~~~~pd~d~Ta~a 81 (151)
.+++.-|=+|+++|+-.|-+. + .-..++.++||.+.|.++++ +|+|....+.. ..|.| + ..+..|+=-|=.|
T Consensus 91 ~~hl~~Ty~Al~~L~ilg~~~~~-~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~--~--~~ge~D~R~~YcA 165 (390)
T 3dra_B 91 CPNLSSTLFALYNLLILKSPYHT-IINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDY--K--QYGEPDLRVCYMA 165 (390)
T ss_dssp CCBHHHHHHHHHHHHHTTCCGGG-TCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEE--E--EESCCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCchhhc-cccHHHHHHHHHHHhCCCCCCCCceeeecccccccccc--c--cCCcchHHHHHHH
Confidence 478999999999999988541 1 11146789999999993222 57775332100 01100 0 0112333334344
Q ss_pred HHHHHHhccCCc--cccCCC--CCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 82 LLCCLHFSMMRP--EIVGEK--MEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 82 l~aL~~~~~~~~--~~~g~~--~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+..+..+..... ...+.+ ....-++++++||+++||.|||++.-
T Consensus 166 ~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~ 213 (390)
T 3dra_B 166 LLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST 213 (390)
T ss_dssp HHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS
T ss_pred HHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 444444432110 000000 00123688999999999999999854
No 34
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.67 E-value=0.011 Score=53.01 Aligned_cols=107 Identities=19% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCC--------CCCccccccCCCCCcccccc
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRH--------ISKGGWTFSNKDHGWQVSDC 77 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~--------~~~GgW~fs~~~~~~pd~d~ 77 (151)
..++..|++..||..+|... .....+++-|.+.-..++-...|...... ..+..+........-.++-.
T Consensus 509 ~~~y~~Al~ayaL~l~~~~~---~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEt 585 (767)
T 4fxk_B 509 LGAHAAAITAYALSLTKAPV---DLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIET 585 (767)
T ss_dssp CCHHHHHHHHHHHHHHTCTT---HHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHH
Confidence 45678888888898888643 34455666666655543211223211100 00111111100000013557
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
||.||++++.... +.+.+.+.++||+..||..|||.+-
T Consensus 586 tayaLla~l~~~~----------~~~~a~~iv~WL~~Qr~~~Ggf~ST 623 (767)
T 4fxk_B 586 TAYALLHLLLHEG----------KAEMADQASAWLTRQGSFQGGFRST 623 (767)
T ss_dssp HHHHHHHHHHHTS----------SCHHHHHHHHHHHHTCCTTSSCSSH
T ss_pred HHHHHHHHHhcCC----------chhHHHHHHHHHHHhhcCCCCCcCH
Confidence 8999999887642 3456788899999999999999753
No 35
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.56 E-value=0.0014 Score=59.52 Aligned_cols=83 Identities=8% Similarity=0.112 Sum_probs=54.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
...++|||+ .||+..=-... .|.-.++++||+++|.+ +|+|+ -......+-..-.|..+|+|
T Consensus 53 S~S~YDTAW--Vamvp~~~~~~-~p~Fp~~~~wil~nQ~~---DGsWg------------~~~~~~~~d~l~~TlAcvlA 114 (785)
T 3s9v_A 53 NPSAYDTAW--VARIPAVDGSD-NPHFPETVEWILQNQLK---DGSWG------------EGFYFLAYDRILATLACIIT 114 (785)
T ss_dssp CCCHHHHHH--HTTSBCTTSCS-SBSSHHHHHHHHHCCCT---TSCCS------------CSSSCCHHHHHHHHHHHHHH
T ss_pred cCcHHHhhH--HhccccCCCCC-CCCchHHHHHHHHccCC---CCCCC------------CCCCCchHHHHHHHHHHHHH
Confidence 567899999 44443211112 45668999999999998 56654 21111112125578999999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|..-. +..++++||+.+|.+.
T Consensus 115 L~~w~----------~~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 115 LTLWR----------TGETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHH
T ss_pred HHHcc----------cCHHHHHHHHHHHHHH
Confidence 98742 3568999999999865
No 36
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.41 E-value=0.0024 Score=58.29 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=55.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
...++|||+ .||+..=-... .|.-..+++||+++|.+ +|+|+ -......+-..-.|..+|+|
T Consensus 80 S~S~YDTAW--VAmvp~~~~~~-~p~Fp~~~~wil~nQ~~---DGsWg------------~~~~~~~~d~ll~TlAcvlA 141 (817)
T 3sdr_A 80 TPSAYDTAW--VARVPAIDGSA-RPQFPQTVDWILKNQLK---DGSWG------------IQSHFLLSDRLLATLSCVLV 141 (817)
T ss_dssp CCCHHHHHH--HHTCBCTTSCS-SBSSHHHHHHHHHCCCT---TSCCS------------CTTCCCHHHHHHHHHHHHHH
T ss_pred ccCHHHhhH--HheeecCCCCC-CCCchHHHHHHHHccCC---CCCCC------------CCCCcchHHHHHHHHHHHHH
Confidence 567899999 45543311112 45668999999999998 56664 11000001234578889999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|..-. +..++++||+.+|.+.
T Consensus 142 L~~w~----------~~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 142 LLKWN----------VGDLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHH
T ss_pred HHHcc----------CCHHHHHHHHHHHHHH
Confidence 98742 3568999999999875
No 37
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.38 E-value=0.00054 Score=66.56 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHh-hccCCCCCCCcccccC--C-CCCccccccCCCCCcccccch
Q 031897 6 SQTWDCALAIQALLACNL---TDEIGPILMKAHDFLKA-SQVTDNPQGDFRSMFR--H-ISKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~~~~~~--~-~~~GgW~fs~~~~~~pd~d~T 78 (151)
+..|-||+++..|+.+.. .-+ ...|.+|++||.+ +|.+ +|.|.+.-+ | .-.||-. ..-.++.-|
T Consensus 1057 ~stWLTAyV~k~f~~A~~~i~~Vd-~~~l~~~~~wL~~~~Q~~---dG~F~e~~~v~~~~m~Gg~~-----~~~~~~~lT 1127 (1642)
T 3prx_B 1057 SSSWLTAYVVKVFAMAAKMVAGIS-HEIICGGVRWLILNRQQP---DGAFKENAPVLSGTMQGGIQ-----GAEEEVYLT 1127 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHhhccCC---CCcccccccccchhccCCcc-----CCCCcccch
Confidence 578999999999988743 123 5689999999998 7877 588765321 1 1133311 001356789
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|++|.||+.......+ ..+....++.+|++||.+.
T Consensus 1128 A~vliaL~e~~~~~~~--~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1128 AFILVALLESKTICND--YVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHhccccccc--ccccchHHHHHHHHHHHHh
Confidence 9999999987532110 1123456899999999854
No 38
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.35 E-value=0.02 Score=55.59 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-hccCCCCCCCcccc---cCCCCCccccccCCCCCcccccch
Q 031897 5 GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKA-SQVTDNPQGDFRSM---FRHISKGGWTFSNKDHGWQVSDCT 78 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~~~~---~~~~~~GgW~fs~~~~~~pd~d~T 78 (151)
.+..|-||+++..|..+.. ..+ ...|.+|++||.+ +|.. +|.|.+. ++....||+. ....++...|
T Consensus 1072 ~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~---~g~f~~~~~~~~~~~~gg~~----~~~~~~~~lt 1143 (1661)
T 2b39_A 1072 PPSTWLTAYVVKVFALAANLIAID-SKDLCETVKWLILEKQKP---DGIFQEDGPVIHQEMIGGFR----DTREKDVSLT 1143 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTBCT---TSCBCCCSCCCCTTSCCCTT----CCTTSSHHHH
T ss_pred CCchhhhHHHHHHHHhhhhcccCC-HHHHHHHHHHhhHhhCCC---CCccccccceechhhcCCcc----ccccCccccH
Confidence 3579999999999988753 223 6789999999995 8887 5777532 1112234421 0012345568
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|++|.+|+..++... -+.+....++.+|++||...
T Consensus 1144 Ayvl~aL~~~~~~~~--~~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A 1144 AFVLIALHEAKDICE--AQVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp HHHHHHHHHTTTTTT--TTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccc--ccCcchhHHHHHHHHHHHHh
Confidence 999999988643210 02223467889999999764
No 39
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.23 E-value=0.0028 Score=57.47 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 5 GSQTWDCALAIQALLACN--LTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G--~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
...++|||+ .||+..= -... .|.-..+++||+++|.+ +|+|+.. +. |+. +-..-.|..+|
T Consensus 30 S~S~YDTAW--Vamvp~~~~~~~~-~p~Fp~~~~wil~nQ~~---DGsWg~~------~~--~~~----~d~ll~TlAcv 91 (764)
T 3p5p_A 30 SPSAYDTAW--VARLATISSDGSE-KPRFPQALNWVFNNQLQ---DGSWGIE------SH--FSL----CDRLLNTTNSV 91 (764)
T ss_dssp CCCHHHHHH--HHHCEEECTTSCE-EESCHHHHHHHHHCCCT---TSCCSCT------TS--CCH----HHHHHHHHHHH
T ss_pred cCcHHHHHH--HHhCccccCCCCC-CCCChHHHHHHHHccCC---CCCCCCC------CC--cch----HHHHHHHHHHH
Confidence 567899999 4554321 1112 45668899999999998 5666410 00 111 22345688889
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ 116 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q 116 (151)
+||..-. +..+++.||+.+|.+.-
T Consensus 92 lAL~~w~----------~~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 92 IALSVWK----------TGHSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHTT----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcc----------CCHHHHHHHHHHHHHHH
Confidence 8888742 24689999999998654
No 40
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.18 E-value=0.0034 Score=56.57 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=54.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
...++|||++ ||+..= +. .|.-.++++||+++|.+ +|+|+. +++ |+. +-..-.|..+|.|
T Consensus 31 S~S~YDTAWV--Amvp~~--~~-~p~Fp~~~~wil~nQ~~---DGsWG~------~~~--~~~----~D~ll~TLAcvlA 90 (727)
T 3pya_A 31 TISAYDTAWV--ALIDAG--DK-TPAFPSAVKWIAENQLS---DGSWGD------AYL--FSY----HDRLINTLACVVA 90 (727)
T ss_dssp CCCHHHHHHH--HTCBCS--SS-SBSCHHHHHHHHHTCCT---TSCCSC------SSS--CCH----HHHHHHHHHHHHH
T ss_pred cCcHHHhHHH--hhccCC--CC-CCCCHHHHHHHHhcCCC---CCCCCC------CCC--cch----hhHHHHHHHHHHH
Confidence 5678999994 555431 22 34568899999999998 566641 000 111 1124578899999
Q ss_pred HHHhccCCccccCCCCCHHHHHHHHHHHHhc
Q 031897 85 CLHFSMMRPEIVGEKMEPERFYDAVNCILSL 115 (151)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~ 115 (151)
|..-. +..++++||+.+|.+.
T Consensus 91 L~~w~----------~~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 91 LRSWN----------LFPHQCNKGITFFREN 111 (727)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHH
T ss_pred HHHcc----------CCHHHHHHHHHHHHHH
Confidence 98742 2467999999999864
No 41
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.16 E-value=0.013 Score=49.20 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC-CCCCCcccccCCCCCccccccCCCC--CcccccchHHH
Q 031897 5 GSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTD-NPQGDFRSMFRHISKGGWTFSNKDH--GWQVSDCTAEA 81 (151)
Q Consensus 5 ~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~-~~~G~~~~~~~~~~~GgW~fs~~~~--~~pd~d~Ta~a 81 (151)
.+.+|-.=+++.+|.-.|...-.....++-++||.++|+++ +..|+|. |+=.+....+ ..|.+-.|=.|
T Consensus 29 ~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~--------g~~~~~~~g~~~~~~hl~~Ty~A 100 (390)
T 3dra_B 29 SNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFR--------STHYFQKTNQKYDCPNLSSTLFA 100 (390)
T ss_dssp TCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEEC--------SSGGGGGSCTTTSCCBHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcC--------CCccCCCCCCccCcccHHHHHHH
Confidence 46788888999999999875211345678899999999873 2235543 1100000111 23566778889
Q ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHHHhccc---C-CCCcccc
Q 031897 82 LLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQS---E-TGGVPAW 125 (151)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn---~-dGGW~~~ 125 (151)
|..|+.++.. +=..++++ +.++||.++|+ + ||||...
T Consensus 101 l~~L~ilg~~----~~~~vdr~---~i~~~l~~lQ~~~~~~dGsF~~~ 141 (390)
T 3dra_B 101 LYNLLILKSP----YHTIINRK---KIMNFLCKCQVKDGINKGGFVPT 141 (390)
T ss_dssp HHHHHHTTCC----GGGTCCHH---HHHHHHHHHBCCSSTTTTCBCSE
T ss_pred HHHHHHhCch----hhccccHH---HHHHHHHHHhCCCCCCCCceeee
Confidence 9999888531 00124443 46889999999 6 8999854
No 42
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.91 E-value=0.027 Score=50.35 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHcCC----CCCc----cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchH
Q 031897 8 TWDCALAIQALLACNL----TDEI----GPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 8 ~wdTala~~AL~~~G~----~~~~----~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (151)
..-+-++...|-+.+. .++. ...|++++.=|++.|+. +|+|+ -|+ ...++.=.||
T Consensus 339 ~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~---DGsfs---------~w~-----~~~~s~wLTA 401 (767)
T 4fxk_B 339 LAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKA---DGSYA---------AWL-----SRDSSTWLTA 401 (767)
T ss_dssp THHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCT---TSCBB---------SSS-----SSCBCHHHHH
T ss_pred hhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcC---CCCcc---------cCC-----CCCCCchhHH
Confidence 3445566777777764 2321 12366777777777877 56654 121 1123444799
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
+++..|..+.+. ..++...+.+++.||+..|++||.|....
T Consensus 402 yV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 402 FVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp HHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred HHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcc
Confidence 999999998652 24678999999999999999999997653
No 43
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=95.55 E-value=0.037 Score=53.76 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCC---CcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQG---DFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G---~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
..+..|++..||+.+|... ..-.++++.|++....++..+ .|..........+|.. ....++-.||.||+
T Consensus 1184 ~~y~~A~lA~Al~l~g~~~---~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~ve~tayaLl 1256 (1676)
T 3cu7_A 1184 STFTLAISAYALSLGDKTH---PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNT----GTARMVETTAYALL 1256 (1676)
T ss_dssp CHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSC----CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCch---hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCC----CccchHHHHHHHHH
Confidence 3566777777787777642 125666777877666431112 2211000000001110 00014557899999
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
+|+... +.+.+.+.++||+..||.+|||.+-
T Consensus 1257 all~~~-----------~~~~~~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1257 TSLNLK-----------DINYVNPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHHHSCSSSCCSTT
T ss_pred HHHhcC-----------ChhHHHHHHHHHHhccCCCCCcccc
Confidence 999863 3556788899999999999999764
No 44
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=95.34 E-value=0.046 Score=53.04 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHH
Q 031897 30 ILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAV 109 (151)
Q Consensus 30 ~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav 109 (151)
.|+.++.=|++.|.. +|+|+ -|+ ...++.=-||+++..|..+.+. + .++...+.+|+
T Consensus 1047 ~i~~g~~r~l~~q~~---dGsfs---------~w~-----~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~ 1103 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQK---SSAYA---------AFQ-----YRPPSTWLTAYVVKVFALAANL-----I-AIDSKDLCETV 1103 (1661)
T ss_dssp HHHHHHHHHHTTBCT---TSCBC---------SST-----TSCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC---CCCcc---------ccC-----CCCCchhhhHHHHHHHHhhhhc-----c-cCCHHHHHHHH
Confidence 455666667777776 46653 222 1123445799999999998752 2 57899999999
Q ss_pred HHHHh-cccCCCCccc
Q 031897 110 NCILS-LQSETGGVPA 124 (151)
Q Consensus 110 ~~Ll~-~Qn~dGGW~~ 124 (151)
+||++ .|++||.|..
T Consensus 1104 ~~L~~~~q~~~g~f~~ 1119 (1661)
T 2b39_A 1104 KWLILEKQKPDGIFQE 1119 (1661)
T ss_dssp HHHHHHTBCTTSCBCC
T ss_pred HHhhHhhCCCCCcccc
Confidence 99995 9999999964
No 45
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=94.99 E-value=0.051 Score=52.77 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHh-cccCCCCcccc
Q 031897 73 QVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS-LQSETGGVPAW 125 (151)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~-~Qn~dGGW~~~ 125 (151)
++.=-||+++..|..+.+. + .++...+.+|++||++ .|++||.|..-
T Consensus 1074 ~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1074 ASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp CCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred CcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 4455799999999999752 2 5789999999999999 99999998643
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=94.86 E-value=0.0047 Score=60.09 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHh-cccCCCCccccC
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS-LQSETGGVPAWE 126 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~-~Qn~dGGW~~~~ 126 (151)
-||++++.|..+.+ .+..++...|.++++||++ .|++||.|..-.
T Consensus 1061 LTAyV~k~f~~A~~-----~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1061 LTAYVVKVFAMAAK-----MVAGISHEIICGGVRWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp ---------------------------------------------------
T ss_pred cHHHHHHHHHHHHh-----hccCCCHHHHHHHHHHHHhhccCCCCcccccc
Confidence 69999999999864 2333788999999999998 899999996543
No 47
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=91.93 E-value=0.26 Score=40.59 Aligned_cols=102 Identities=11% Similarity=-0.000 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCc-----ccccch
Q 031897 7 QTWDCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGW-----QVSDCT 78 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~-----pd~d~T 78 (151)
.+|++++.+.+++.+.. .+++....+++++||++.-...+ .|+|. ++. ..+- ...++-
T Consensus 50 ~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~-~Gg~~------------~~~-~dG~~~~~~~~lyd~ 115 (402)
T 3gt5_A 50 HLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPA-TGGYA------------WTL-CDDRVEDDTNHCYGL 115 (402)
T ss_dssp EHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTT-TSCBC------------SEE-ETTEEEECCEEHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCC-CCcEE------------EEe-eCCCCCcCCcchHHH
Confidence 47999999999988752 23467889999999998543310 14443 333 2222 235677
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhc-ccCC-CCcc-ccCC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL-QSET-GGVP-AWEP 127 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~-Qn~d-GGW~-~~~~ 127 (151)
|.++.||+.+.. .|.+...+..++..++|+.. ..++ |++- ++.+
T Consensus 116 Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~ 162 (402)
T 3gt5_A 116 AFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADA 162 (402)
T ss_dssp HHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECT
T ss_pred HHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCC
Confidence 999999998543 25555556666667777654 4444 5543 3443
No 48
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=91.63 E-value=0.48 Score=44.15 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc-cCCCCCCCcccccCCC-CCccccccCCCCCcccccchHHHHHHH
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQ-VTDNPQGDFRSMFRHI-SKGGWTFSNKDHGWQVSDCTAEALLCC 85 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q-~~~~~~G~~~~~~~~~-~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (151)
+.|++++++||...|.. ...++.++||.+.| .+ +|.+...|+-. .++ |. .+..|.|+..|.++
T Consensus 331 ~RDaa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~---~G~~~~~y~i~G~~~-w~-------~~Q~D~~g~~l~~~ 395 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAGDE----EAAARGVEWLFTYQQQP---DGHFPQTSRVDGTIG-QN-------GIQLDETAFPILLA 395 (1020)
T ss_dssp HHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCT---TSCCCSCBCTTSCBC-CC-------CCBTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCC---CCCeeeEEecCCCcC-CC-------CccCccchHHHHHH
Confidence 37999999999999963 56899999999999 44 57775544321 111 21 14679999999999
Q ss_pred HHhccCCccccCCCCCHH-HHHHHHHHHHhcc
Q 031897 86 LHFSMMRPEIVGEKMEPE-RFYDAVNCILSLQ 116 (151)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~-~l~rav~~Ll~~Q 116 (151)
..+.+. +.. .-+ .++++++|+...-
T Consensus 396 ~~~~~~-----d~~-~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 396 NQIGRT-----DAG-FYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HHHTCC-----CHH-HHHHTHHHHHHHHHHHC
T ss_pred HHHHhc-----CHH-HHHHHHHHHHHHHHHhC
Confidence 987542 111 123 7999999999873
No 49
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=90.51 E-value=0.045 Score=49.97 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=28.3
Q ss_pred ccccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 031897 73 QVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
|.+-+||| .||. .... | ...+....+++||+..|.+||||+.
T Consensus 81 ~S~YDTAW--VAmv--p~~~----~--~~~p~Fp~~~~wil~nQ~~DGsWg~ 122 (817)
T 3sdr_A 81 PSAYDTAW--VARV--PAID----G--SARPQFPQTVDWILKNQLKDGSWGI 122 (817)
T ss_dssp CCHHHHHH--HHTC--BCTT----S--CSSBSSHHHHHHHHHCCCTTSCCSC
T ss_pred cCHHHhhH--Hhee--ecCC----C--CCCCCchHHHHHHHHccCCCCCCCC
Confidence 44568999 3333 2211 1 1234556799999999999999985
No 50
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=90.49 E-value=0.17 Score=41.00 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHHcCC----CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 7 QTWDCALAIQALLACNL----TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~----~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.+|+.++.+.+++.+.. .+.|...++++++||++.-... +|+|..... ..|.. .. .......-|.++
T Consensus 51 ~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~--~Gg~~~~~d--~dg~~----~~-~~~~~~~~af~i 121 (388)
T 2gz6_A 51 FIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD--EGNWYFALT--RGGEP----LV-QPYNIFSDCFAA 121 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT--TSCBCSEEC--TTSCB----CC-CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEc--CCCCc----cc-CCcchHHHHHHH
Confidence 47899999999988643 2347788999999999974432 466643221 11110 00 012345678999
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCccc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ-SETGGVPA 124 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q-n~dGGW~~ 124 (151)
.||..+.+. .|.+...+..++..++++... .++|.|..
T Consensus 122 ~al~~~y~~----tg~~~~l~~A~~~~~~i~~~~~d~~g~~~~ 160 (388)
T 2gz6_A 122 MAFSQYALA----SGEEWAKDVAMQAYNNVLRRKDNPKGKYTK 160 (388)
T ss_dssp HHHHHHHHH----HCCHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCcccCc
Confidence 999886542 133333344555666776655 33455443
No 51
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=90.27 E-value=0.041 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcccCCCCccc
Q 031897 102 PERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.+....+++||+..|.+||||+.
T Consensus 73 ~p~Fp~~~~wil~nQ~~DGsWg~ 95 (785)
T 3s9v_A 73 NPHFPETVEWILQNQLKDGSWGE 95 (785)
T ss_dssp SBSSHHHHHHHHHCCCTTSCCSC
T ss_pred CCCchHHHHHHHHccCCCCCCCC
Confidence 34566799999999999999984
No 52
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=90.19 E-value=0.41 Score=39.65 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCc----ccccchH
Q 031897 6 SQTWDCALAIQALLACNLT--DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGW----QVSDCTA 79 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~--~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~----pd~d~Ta 79 (151)
-.+|++++.+.+++.++.. +++...+.++++||.+.-... ..|+| .++....+- -...+-|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~~~D~-~~GG~------------~~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDK-KYGGW------------YACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTTTBCT-TTSSB------------CSEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhccCc-CCCeE------------EEEeCCCCCcCCchhHHHHH
Confidence 3579999999999887542 346788999999999873321 12443 333211111 1234558
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHh-cccC-CCCcc
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILS-LQSE-TGGVP 123 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~-~Qn~-dGGW~ 123 (151)
.++.+|+.. +. .|.+...+.+++.++++.+ +..+ +|||-
T Consensus 115 f~i~al~~~-~~----tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~ 155 (421)
T 2zbl_A 115 FALLGAASA-VT----TGHPEARKLLDYTIEVIEKYFWSEEEQMCL 155 (421)
T ss_dssp HHHHHHHHH-HT----TTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred HHHHHHHHH-HH----hCCccHHHHHHHHHHHHHHHhccCCCCCee
Confidence 888888873 32 2555566777788888875 4445 67764
No 53
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=89.92 E-value=0.046 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcccCCCCccc
Q 031897 102 PERFYDAVNCILSLQSETGGVPA 124 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW~~ 124 (151)
.+....+++||+..|.+||||+.
T Consensus 52 ~p~Fp~~~~wil~nQ~~DGsWg~ 74 (764)
T 3p5p_A 52 KPRFPQALNWVFNNQLQDGSWGI 74 (764)
T ss_dssp EESCHHHHHHHHHCCCTTSCCSC
T ss_pred CCCChHHHHHHHHccCCCCCCCC
Confidence 34566799999999999999985
No 54
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=89.89 E-value=0.082 Score=47.68 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcccCCCCcccc
Q 031897 105 FYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 105 l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
...+++||+..|.+||||+..
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCS
T ss_pred CHHHHHHHHhcCCCCCCCCCC
Confidence 567899999999999999964
No 55
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=88.58 E-value=0.4 Score=40.78 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhh------ccCCCCCCCcccccCCCCCccccccCCCCCcccccchH
Q 031897 9 WDCALAIQALLACNL---TDEIGPILMKAHDFLKAS------QVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTA 79 (151)
Q Consensus 9 wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~------Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (151)
|+-++.+.+|+.+.. ++.|...+++.++||.+. +..+ +|.....+++ + + .++ -.|+.+
T Consensus 82 y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~--~G~l~~~~r~----~--~--~~~---~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEE--KGKTDSQLLQ----I--L--TPH---ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHH----H--H--SCC---SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhc--cCCeeccccc----c--c--CCC---cchhHH
Confidence 889999999998864 233777889999988752 2222 2433211111 1 1 111 267788
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc--cCCCCccccCCCCcchhhhc
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ--SETGGVPAWEPTGAPSWLEL 136 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q--n~dGGW~~~~~~~~~~~l~~ 136 (151)
..+.+|+.+.+. -+.+...+.+.+..+||+..| +++||+-.-......-|+.-
T Consensus 149 ~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~ 203 (445)
T 3k11_A 149 AVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDD 203 (445)
T ss_dssp HHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCceEecc
Confidence 777777776542 245667899999999999998 67899886544444555554
No 56
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=88.25 E-value=3 Score=34.26 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFY 106 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ 106 (151)
+...+++.+++|++.|.+ +|.|.. ..+ ....|++++.||...-||+...+. +.+. +...++.+
T Consensus 261 ~~~~~~~~a~~~~~~q~~---~G~W~~-~~d----------~~~~y~EsSatA~~ay~ll~~~~~--g~l~-~~Y~~~a~ 323 (382)
T 3pmm_A 261 LITVLDAQIAALAECQDD---SGLWHT-LLD----------DPHSYLEASATAGFAYGILKAVRK--RYVG-QHYAGVAE 323 (382)
T ss_dssp HHHHHHHHHHHHHHHCCT---TSCEES-BTT----------CTTSCEEHHHHHHHHHHHHHHHHT--TSSC-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---CCChhh-ccC----------CCCCCccccHHHHHHHHHHHHHHc--CCCc-HHHHHHHH
Confidence 446688999999999975 566641 111 112477899999888888776541 1122 33678999
Q ss_pred HHHHHHHhcccCCCCccc
Q 031897 107 DAVNCILSLQSETGGVPA 124 (151)
Q Consensus 107 rav~~Ll~~Qn~dGGW~~ 124 (151)
|+.+-|++.-++||-...
T Consensus 324 ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 324 KAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHhhCCCCCCEeC
Confidence 999999999999986543
No 57
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=88.01 E-value=0.86 Score=40.38 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHh
Q 031897 9 WDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHF 88 (151)
Q Consensus 9 wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 88 (151)
-|.+++++||...|. ....++.++||.+.|.+ +|.+...+. ..|. .+ -+.+..|.|+..|.++..+
T Consensus 343 RD~~~~~~al~~~G~----~~~a~~~l~~l~~~q~~---~G~~~~~~~--~~G~-p~----w~~~Q~D~~g~~l~~~~~~ 408 (684)
T 1lf6_A 343 RDLYHVANAFIAAGD----VDSANRSLDYLAKVVKD---NGMIPQNTW--ISGK-PY----WTGIQLDEQADPIILSYRL 408 (684)
T ss_dssp HHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHH---HSSCCSCBC--TTSC-BC----CCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCC----HHHHHHHHHHHHhhcCC---CCCccccee--CCCC-cc----cCCccccchHHHHHHHHHH
Confidence 689999999999995 35689999999999987 466532221 1222 11 1125689999999988766
Q ss_pred ccCCccccCCCCCHHH-HHHHHHHHHhcc
Q 031897 89 SMMRPEIVGEKMEPER-FYDAVNCILSLQ 116 (151)
Q Consensus 89 ~~~~~~~~g~~~~~~~-l~rav~~Ll~~Q 116 (151)
.+. | .-+. ++++++|+.+.-
T Consensus 409 ~~~-----g---~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 409 KRY-----D---LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp TCG-----G---GTTTTHHHHHHHHHHHC
T ss_pred HHc-----C---chHHHHHHHHHHHHHhC
Confidence 431 3 3456 999999999864
No 58
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=87.30 E-value=0.7 Score=38.16 Aligned_cols=108 Identities=10% Similarity=0.170 Sum_probs=59.4
Q ss_pred CChh-HHH-HHHHHHHHcCC-CCC---ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCC----CCCcccc
Q 031897 6 SQTW-DCA-LAIQALLACNL-TDE---IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNK----DHGWQVS 75 (151)
Q Consensus 6 ~~~w-dTa-la~~AL~~~G~-~~~---~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~----~~~~pd~ 75 (151)
.++| |+. +++..|+..+. ..+ ++.+++.+..+....+.++ .|-|. .+|.++.. ...|.
T Consensus 165 ~~~WiDgl~M~~p~La~~~~~tgd~~y~d~A~~q~~~~~~~l~D~~--tGl~~--------h~~~~~~~~~~~~~~Wa-- 232 (382)
T 3pmm_A 165 QQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRE--TGLWF--------HGWNYEGRHNFARARWA-- 232 (382)
T ss_dssp TEEETTHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHBCTT--TSCBC--------SEEETTTTBCTTCCCBH--
T ss_pred CcEEecchhhhHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHccCCC--CCCee--------eeccCCCCCCCCcceec--
Confidence 4677 653 45555555542 222 2334444555555555554 57665 33443321 11111
Q ss_pred cchHHHHHHHHHhccC---CccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 031897 76 DCTAEALLCCLHFSMM---RPEIVGEKMEPERFYDAVNCILSLQSETGGVPAW 125 (151)
Q Consensus 76 d~Ta~al~aL~~~~~~---~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~ 125 (151)
=.-+|++.||..+-+. |.++-+++.-.+.+++-++.|+..|.+||-|...
T Consensus 233 RG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~ 285 (382)
T 3pmm_A 233 RGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTL 285 (382)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESB
T ss_pred ccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhc
Confidence 1258999999876431 2111122223457888899999999999999854
No 59
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=86.88 E-value=0.76 Score=37.43 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHHHcCC------CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCc-cccccCCCCC-----cc
Q 031897 6 SQTWDCALAIQALLACNL------TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKG-GWTFSNKDHG-----WQ 73 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~------~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~G-gW~fs~~~~~-----~p 73 (151)
..+|+.++.+.+++.+.. .+++...++++++||++.-... .| | ||.++....+ .-
T Consensus 53 k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~--~g-----------g~g~~~s~d~dg~~~~~~~ 119 (402)
T 1fp3_A 53 KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVA--PP-----------EKKCAFVLTRDGRPVKVQR 119 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSS--TT-----------SCCBCSEECTTSCEEECCS
T ss_pred cchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCc--CC-----------CCceEEEECCCCCcccccc
Confidence 348999999999986532 3346788999999999874331 22 1 3333321111 12
Q ss_pred cccchHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc--cCCCCcccc
Q 031897 74 VSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ--SETGGVPAW 125 (151)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q--n~dGGW~~~ 125 (151)
...+-|..+.|++.+.+.- |.+...+..++.+++++..- .+.|+|...
T Consensus 120 ~lyd~af~~~a~~~~~~at----gd~~~~~~A~~l~~~~~~~~~d~~~G~f~~~ 169 (402)
T 1fp3_A 120 SIFSECFYTMAMNELWRVT----AEARYQSEAVDMMDQIVHWVREDPSGLGRPQ 169 (402)
T ss_dssp SSHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHTCGGGGCCCC
T ss_pred chHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhccCCCcccCcc
Confidence 3445788888888765421 32222333444455555433 456776433
No 60
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=86.17 E-value=0.85 Score=37.78 Aligned_cols=105 Identities=16% Similarity=0.044 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccc-cCCCCCccccccCCCCCcccccch------
Q 031897 9 WDCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQGDFRSM-FRHISKGGWTFSNKDHGWQVSDCT------ 78 (151)
Q Consensus 9 wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~T------ 78 (151)
=||.+.+.+|..++. +++|.....++++++++...++ +|..... +.++..|.+-.....+|+. |+.
T Consensus 148 ID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~--dgs~~h~~~~D~~tG~~~~~~t~qG~~--dds~WaRGq 223 (377)
T 2ahf_A 148 IDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRG--DDSSYHTFYFDPENGNAIRGGTHQGNT--DGSTWTRGQ 223 (377)
T ss_dssp GGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBT--TSCBCSEEEECTTTCCEEEEECSSSSS--TTSCBHHHH
T ss_pred echHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCC--CCCeEEEEEeeCCCCCeeeCCCcCCcC--CcchhHHHH
Confidence 377778888876543 3457778888899999988774 4544322 2233344331111123343 345
Q ss_pred HHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCC
Q 031897 79 AEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGG 121 (151)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGG 121 (151)
|+++.||..+.+.- +.+..-+..++..++++.....||+
T Consensus 224 Aw~i~gl~~ly~~T----~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 224 AWGIYGFALNSRYL----GNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHH----CChHHHHHHHHHHHHHHHhhHHhCC
Confidence 99999999876421 2222223455557888888866776
No 61
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=85.07 E-value=2 Score=35.03 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=62.8
Q ss_pred ChhH--HHHHHHHHHHcC--CCCC------ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCccccc
Q 031897 7 QTWD--CALAIQALLACN--LTDE------IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSD 76 (151)
Q Consensus 7 ~~wd--Tala~~AL~~~G--~~~~------~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d 76 (151)
..|. .++++.+|...= ++.+ +....++.+++|++.|.++ +|.|.. ..+. ++ ....+++++
T Consensus 209 ~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~--dG~W~~-~ld~--~~-----~~~~~~EsS 278 (373)
T 1nc5_A 209 EFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKE--TGLWYQ-IVDK--GD-----RSDNWLESS 278 (373)
T ss_dssp CCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTT--TSCCBS-BTTC--TT-----STTCCBCHH
T ss_pred CcccchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCC--CCceee-ecCC--CC-----CCCCCcccc
Confidence 3553 455777776652 2221 4566788899999999763 465541 1110 10 113467888
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhc---ccCCCC
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL---QSETGG 121 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~---Qn~dGG 121 (151)
.||...-+|+...+. ..+. +...++++|+.+.|++. .++||-
T Consensus 279 atA~~ay~l~~g~~~--g~l~-~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 279 GSCLYMYAIAKGINK--GYLD-RAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHHHHHHHH--TSSC-GGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHHHHHHC--CCCc-HHHHHHHHHHHHHHHHhceeECCCCC
Confidence 888888888875321 0111 34678999999999873 578883
No 62
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.54 E-value=2.6 Score=35.68 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHHH
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFY 106 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~ 106 (151)
+...+++.++.|++.|.+ +|.|.. ..+ ....|++++.||...-||+...+.. .+......++.+
T Consensus 292 l~~~~~~~a~~l~~~Q~~---~G~W~~-vld----------~~~~y~EsSaTAmfaygllkgvr~G--~Ld~~~Y~~~A~ 355 (445)
T 3k11_A 292 VMDYFRAHVRGVTALQSG---EGFWHQ-LLD----------CNDSYLETSATAIYVYCLAHAINKG--WIDAIAYGPVAQ 355 (445)
T ss_dssp HHHHHHHHHHHHHTTCCT---TSCEES-BTT----------CTTSCEEHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---CCchhh-ccC----------CCCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 446788999999999975 566642 111 1234688899998888887754310 011112346889
Q ss_pred HHHHHHHhcccCCCCc
Q 031897 107 DAVNCILSLQSETGGV 122 (151)
Q Consensus 107 rav~~Ll~~Qn~dGGW 122 (151)
||.+.|+..-++||--
T Consensus 356 ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 356 LGWHAVAGKINEEGQV 371 (445)
T ss_dssp HHHHHHHTTBCTTSCB
T ss_pred HHHHHHHHhCCCCCCE
Confidence 9999999988899854
No 63
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=84.27 E-value=3.8 Score=35.90 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHH----HcCCCCCccHHHHHHHHHHHh---hccCCCCCCCcc------cccCCCCCccccccCCCCCccc
Q 031897 8 TWDCALAIQALL----ACNLTDEIGPILMKAHDFLKA---SQVTDNPQGDFR------SMFRHISKGGWTFSNKDHGWQV 74 (151)
Q Consensus 8 ~wdTala~~AL~----~~G~~~~~~~~i~rA~~~L~~---~Q~~~~~~G~~~------~~~~~~~~GgW~fs~~~~~~pd 74 (151)
+-|.++++.||. ..|. ....++..+||.+ .|...+++|.|. +...+. . |..|. ..-+.|.
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~l-d-G~~~~-~~w~~~Q 124 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFEL-T-LKPFT-GNWGRPQ 124 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECT-T-SCBCC-SCCSCCC
T ss_pred hhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEec-C-Ccccc-CcCCCee
Confidence 469999999999 8886 3567889999975 665445577763 110011 1 21221 1112366
Q ss_pred ccc-----hHHHHHHHHHhccCCccccCCC-----CCHHHHHHHHHHHHhcccCCCCccccCCC
Q 031897 75 SDC-----TAEALLCCLHFSMMRPEIVGEK-----MEPERFYDAVNCILSLQSETGGVPAWEPT 128 (151)
Q Consensus 75 ~d~-----Ta~al~aL~~~~~~~~~~~g~~-----~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~ 128 (151)
.|. ++..+.++..+.. |.. ..-+.|+++++|+...-+.. +.+-+|-.
T Consensus 125 ~D~~glr~~~~~~~~~~~~~~------g~~~~~~~~~w~~v~~~l~~v~~~w~~~-d~dlWEer 181 (599)
T 2vn4_A 125 RDGPALRAIALIGYSKWLINN------NYQSTVSNVIWPIVRNDLNYVAQYWNQT-GFDLWEEV 181 (599)
T ss_dssp THHHHHHHHHHHHHHHHHHHT------TCHHHHHHHTHHHHHHHHHHHHHHTTSC-EECTTSCC
T ss_pred ccccchhHHHHHHHHHHHHHh------CCcccccHHHHHHHHHHHHHHHHhCCCC-CCCeeeec
Confidence 777 5555555542211 111 13478999999999887753 45555544
No 64
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=80.98 E-value=1.9 Score=27.65 Aligned_cols=30 Identities=23% Similarity=0.081 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 031897 10 DCALAIQALLACNLTDEIGPILMKAHDFLKASQVTD 45 (151)
Q Consensus 10 dTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~ 45 (151)
+-..++.||..++- .+.+|++||.+.|.+.
T Consensus 42 ~r~~a~~AL~~~~~------nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 42 DRTQVEVALAAADD------DLTVAVEILMSQSGPS 71 (73)
T ss_dssp CHHHHHHHHHHHTS------CHHHHHHHHHTCSCSS
T ss_pred CHHHHHHHHHHhCC------CHHHHHHHHHHCCCCC
Confidence 33445555555543 2789999999988763
No 65
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.01 E-value=2.7 Score=25.98 Aligned_cols=29 Identities=24% Similarity=0.091 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVTD 45 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~ 45 (151)
...|+.||..++- .+.+|++||.+++.+.
T Consensus 23 ~~~a~~AL~~~~~------nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 23 KEASRQALMDNGN------NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHCCCCc
Confidence 3445666666653 2899999999987763
No 66
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=76.92 E-value=4.2 Score=35.95 Aligned_cols=82 Identities=11% Similarity=0.190 Sum_probs=49.4
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCCCccccc----C--CCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCC
Q 031897 25 DEIGPILMKAHDFLKASQVTDNPQGDFRSMF----R--HISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGE 98 (151)
Q Consensus 25 ~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~----~--~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~ 98 (151)
..+...+.+++--|+..+.+. +.|...-.. + ......|.|.+. | .=|++..+++|+.++
T Consensus 292 ~~~~~~~~rs~~~Lk~l~~~~-~~G~iiAs~t~~~~e~~~~~~~~dY~~~---W--~RD~~~~~~al~~~G--------- 356 (684)
T 1lf6_A 292 GKANSLYYNSMMILKASEDKT-NKGAYIASLSIPWGDGQRDDNTGGYHLV---W--SRDLYHVANAFIAAG--------- 356 (684)
T ss_dssp TTCCHHHHHHHHHHHTTBCSS-STTCBCSCSSCTTGGGSBSBSCCGGGSB---C--HHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHHHhccCCC-CCccEEeecCCCCccccCCCCCCCCEEE---e--ccHHHHHHHHHHHcC---------
Confidence 345677888888888777631 245431100 0 000112333220 1 125677888888875
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcc
Q 031897 99 KMEPERFYDAVNCILSLQSETGGVP 123 (151)
Q Consensus 99 ~~~~~~l~rav~~Ll~~Qn~dGGW~ 123 (151)
..+..++.++||.+.|+++|+|.
T Consensus 357 --~~~~a~~~l~~l~~~q~~~G~~~ 379 (684)
T 1lf6_A 357 --DVDSANRSLDYLAKVVKDNGMIP 379 (684)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSSCC
T ss_pred --CHHHHHHHHHHHHhhcCCCCCcc
Confidence 35678899999999999999984
No 67
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.73 E-value=2.9 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 14 AIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 14 a~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
|..||.+.|- .|.||++||-++..+
T Consensus 36 A~kALKat~~------NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 36 VLRAMKKKGE------NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHCS------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCC------CHHHHHHHHHhCCCC
Confidence 4445555442 289999999997766
No 68
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.83 E-value=4.2 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dG 120 (151)
....+.||.+.. --+++||+||++-+...|
T Consensus 34 ~~an~~AL~at~-------------Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 34 YNANLQALIATD-------------GDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHTT-------------SCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHcC-------------CCHHHHHHHHHhCCCccC
Confidence 556688888764 237899999999887765
No 69
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.21 E-value=4 Score=25.39 Aligned_cols=17 Identities=0% Similarity=0.163 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcccCCC
Q 031897 104 RFYDAVNCILSLQSETG 120 (151)
Q Consensus 104 ~l~rav~~Ll~~Qn~dG 120 (151)
.|+||+|||.+-..+.-
T Consensus 46 NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 46 NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp CHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 38999999998776653
No 70
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=72.28 E-value=6.1 Score=33.71 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHhhccCCCCCCCccc---------cc-CCCC--CccccccCCCCC
Q 031897 8 TWDCALAIQALLACNLTDE----IGPILMKAHDFLKASQVTDNPQGDFRS---------MF-RHIS--KGGWTFSNKDHG 71 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~----~~~~i~rA~~~L~~~Q~~~~~~G~~~~---------~~-~~~~--~GgW~fs~~~~~ 71 (151)
+-|.++++.||...|...+ ....+++-++|....|...+++|.|.. .| .+.. .++|+
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~------- 140 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWG------- 140 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCS-------
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccC-------
Confidence 4599999999999996322 133444445542245543334676651 22 1111 22332
Q ss_pred cccccchHHHHHHHHHhccCCccccCCC-----------C-----C-HHHHHHHHHHHHhccc
Q 031897 72 WQVSDCTAEALLCCLHFSMMRPEIVGEK-----------M-----E-PERFYDAVNCILSLQS 117 (151)
Q Consensus 72 ~pd~d~Ta~al~aL~~~~~~~~~~~g~~-----------~-----~-~~~l~rav~~Ll~~Qn 117 (151)
.|-.|.++..+.+|..+.+... ..+.. . . .+.|++.++|+...=+
T Consensus 141 ~~Q~D~~g~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~ 202 (492)
T 2fba_A 141 RPQNDGPALRAYAISRYLNDVN-SLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWD 202 (492)
T ss_dssp CCBTTHHHHHHHHHHHHHHHHH-HHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTT
T ss_pred CccccchhHHHHHHHHHHHHhh-ccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcC
Confidence 3778999998888875421100 01110 0 1 2678899999987643
No 71
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=72.26 E-value=3.9 Score=24.20 Aligned_cols=26 Identities=31% Similarity=0.160 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQ 42 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q 42 (151)
...++.||..++- .+.+|++||.+.+
T Consensus 26 ~~~~~~AL~~t~g------nve~Ave~L~~~~ 51 (53)
T 2knz_A 26 REANLQALIATGG------DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTS------CHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHcC
Confidence 3445556655542 2789999998865
No 72
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=71.94 E-value=5.3 Score=25.31 Aligned_cols=28 Identities=25% Similarity=0.115 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
...|..||..++- .+.+|++||.+++..
T Consensus 43 ~~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 3445555555542 278999999987654
No 73
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.36 E-value=4.3 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.076 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
.-..+.||.+++- .|.+|++||.+.+..
T Consensus 34 ~~an~~AL~at~G------nve~Ave~L~~~~~~ 61 (67)
T 2dna_A 34 YNANLQALIATDG------DTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHhCCCc
Confidence 3344566666552 289999999997654
No 74
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.87 E-value=4.4 Score=26.57 Aligned_cols=13 Identities=15% Similarity=-0.066 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcc
Q 031897 31 LMKAHDFLKASQV 43 (151)
Q Consensus 31 i~rA~~~L~~~Q~ 43 (151)
+.+|++||.++|-
T Consensus 57 ve~A~e~L~sh~~ 69 (83)
T 1veg_A 57 VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCC
Confidence 8999999999776
No 75
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=70.14 E-value=8.4 Score=32.02 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccC-CCCCccccccCCCCCcccccch------H
Q 031897 10 DCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFR-HISKGGWTFSNKDHGWQVSDCT------A 79 (151)
Q Consensus 10 dTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~-~~~~GgW~fs~~~~~~pd~d~T------a 79 (151)
|+.+-+.+|..++. +++|...-.++++++++....+ +|.....++ ++..|.+......+|+ .|++ |
T Consensus 174 D~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~--dgs~~h~~~~d~~~G~~~~~~t~qGy--~dds~WaRGqA 249 (397)
T 2zzr_A 174 DCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRD--DSSAFHTFYFDPETGEPLKGVTRQGY--SDESSWARGQA 249 (397)
T ss_dssp THHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCT--TSCBCSEEEECTTTCCEEEEECTTSS--STTSCBHHHHH
T ss_pred chHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCC--CCCeEEEEEeeCCCCCcccCCccccc--CcchhhHHHHH
Confidence 78888889987753 3346677788889999988774 454433222 2223543222223344 3444 9
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHH---HHHHHhcccCCCCccccC
Q 031897 80 EALLCCLHFSMMRPEIVGEKMEPERFYDA---VNCILSLQSETGGVPAWE 126 (151)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~l~ra---v~~Ll~~Qn~dGGW~~~~ 126 (151)
+++.||..+.+.- + +.+-|+.| .++++..=..||+ +.|+
T Consensus 250 w~i~gl~~lY~~T----~---d~~yL~~A~~la~~~l~~~~~d~~-pywd 291 (397)
T 2zzr_A 250 WGIYGIPLSYRKM----K---DYQQIILFKGMTNYFLNRLPEDKV-SYWD 291 (397)
T ss_dssp HHHHHHHHHHHHH----C---CHHHHHHHHHHHHHHHHTCCTTSC-CBSB
T ss_pred HHHHHHHHHHHHH----C---CHHHHHHHHHHHHHHHHhhHHhCC-cccc
Confidence 9999999975421 2 33444444 4556655444554 4443
No 76
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.60 E-value=4.9 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLKAS 41 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~~~ 41 (151)
..+..||..+| + +.+|++||.++
T Consensus 24 ~~a~~AL~~~~---n----~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS---T----MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC---S----HHHHHHHHHTC
T ss_pred HHHHHHHHHcC---C----HHHHHHHHHcC
Confidence 44556666664 2 78899999864
No 77
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=69.48 E-value=21 Score=29.30 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCccccc---chHHHHHHHH
Q 031897 10 DCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSD---CTAEALLCCL 86 (151)
Q Consensus 10 dTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d---~Ta~al~aL~ 86 (151)
|.-++.+-|+..|.... ...+||++ +... .|... +.... ..+-|.+. --..||.+|.
T Consensus 233 Dalrv~L~La~~g~~~~------~~~~fl~~-~~~~--~g~l~--------~~y~~---~tg~~~~~~eS~g~yAiaal~ 292 (350)
T 3ren_A 233 LSTIVILNRIEAGENEE------SSIKWIKE-KFKK--DGFLV--------ATYNG---KNGDATSQIESPSIYSNVALI 292 (350)
T ss_dssp HHHHHHHHHHHTTCCCH------HHHHHHHH-HHHH--HSSCC--------SEEET---TTCCBCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcH------HHHHHHHH-HHhh--cCCcc--------eEEEC---CCCCcCCCCCCHHHHHHHHHH
Confidence 56677788999998742 23778873 2210 12111 11111 11112222 2244455555
Q ss_pred HhccCCccccCCCCCHHHHHHHHHHHHhcccCC------CCccccCCCCcchhhhcc
Q 031897 87 HFSMMRPEIVGEKMEPERFYDAVNCILSLQSET------GGVPAWEPTGAPSWLELL 137 (151)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~d------GGW~~~~~~~~~~~l~~~ 137 (151)
++.. -+.+-.+.+++-+...|..| ||++.-+.++..+|=|++
T Consensus 293 ~~~~---------~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~ 340 (350)
T 3ren_A 293 ANYI---------GDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLN 340 (350)
T ss_dssp HHHH---------TCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHH
T ss_pred HHHc---------CCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHH
Confidence 5431 16788888999999999998 788776777888887776
No 78
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=69.05 E-value=10 Score=32.27 Aligned_cols=102 Identities=24% Similarity=0.327 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHH---HcCCCCCccHHHHHHHHHHHh---hccCCCCCCCcc------cccC-CCC--CccccccCCCCCc
Q 031897 8 TWDCALAIQALL---ACNLTDEIGPILMKAHDFLKA---SQVTDNPQGDFR------SMFR-HIS--KGGWTFSNKDHGW 72 (151)
Q Consensus 8 ~wdTala~~AL~---~~G~~~~~~~~i~rA~~~L~~---~Q~~~~~~G~~~------~~~~-~~~--~GgW~fs~~~~~~ 72 (151)
+-|.++++.||. ..|... ..++..+||.. .|...+++|.|. ..|. +.. .+.|+ .
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~----~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~~~w~-------~ 121 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTD----LLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWG-------R 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCCS-------C
T ss_pred hhhHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccCCcCC-------C
Confidence 469999999999 888743 35777778776 453333467665 3332 111 23342 3
Q ss_pred ccccc-----hHHHHHHHHHhccCCccccCCC-----CCHHHHHHHHHHHHhcccCCCCccccCC
Q 031897 73 QVSDC-----TAEALLCCLHFSMMRPEIVGEK-----MEPERFYDAVNCILSLQSETGGVPAWEP 127 (151)
Q Consensus 73 pd~d~-----Ta~al~aL~~~~~~~~~~~g~~-----~~~~~l~rav~~Ll~~Qn~dGGW~~~~~ 127 (151)
|..|. ++..+.++. +.+. |.. ..-+.|++.++|+...=+.. +.+-||-
T Consensus 122 ~Q~D~~g~ra~~~~~~~~~-l~~~-----g~~~~~~~~~w~~i~~~l~~v~~~w~~p-d~dlWEe 179 (472)
T 1gai_A 122 PQRDGPALRATAMIGFGQW-LLDN-----GYTSAATEIVWPLVRNDLSYVAQYWNQT-GYDLWEE 179 (472)
T ss_dssp CCTHHHHHHHHHHHHHHHH-HHHT-----TCHHHHHHTHHHHHHHHHHHHHHHTTSC-EECTTSC
T ss_pred ccccccchhHHHHHHHHHH-HHHc-----CCccccchhHHHHHHHHHHHHHHhcCCC-CCCCCcc
Confidence 67788 566666654 2211 211 12356999999997664432 4444443
No 79
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.83 E-value=6.7 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
..|..||..++- ..+.+|++||.+++..
T Consensus 34 ~~a~~AL~~t~~-----~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGG-----RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTT-----SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCC-----CCHHHHHHHHHhCCCC
Confidence 345555555542 1388999999987654
No 80
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=67.81 E-value=7.1 Score=31.21 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHH
Q 031897 6 SQTWDCALAIQALLACNL---TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEAL 82 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (151)
.++++-||++.||++... .+++....++.+++|+++...+ .|.|...++. +. .....+..+.++
T Consensus 112 ~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~--~g~~~~~~~~-----~~------~~~~~~~~~~~~ 178 (388)
T 2gz6_A 112 YNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNP--KGKYTKTYPG-----TR------PMKALAVPMILA 178 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC---------------------CC------CCEETHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CcccCcccCC-----CC------CCCCCCHHHHHH
Confidence 568999999999987432 2234556677777887765321 3433221211 10 011244566777
Q ss_pred HHHHHhccCCccccCCCCCHHHHHHHHHHHHhc--ccCCCCc
Q 031897 83 LCCLHFSMMRPEIVGEKMEPERFYDAVNCILSL--QSETGGV 122 (151)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~--Qn~dGGW 122 (151)
.+|+++.+.- +.+...+..++.++.++.. +.++|+.
T Consensus 179 ~all~l~~~t----~d~~~~~~A~~~~~~~~~~~~~~~~g~~ 216 (388)
T 2gz6_A 179 NLTLEMEWLL----PQETLENVLAATVQEVMGDFLDQEQGLM 216 (388)
T ss_dssp HHHHHTGGGS----CHHHHHHHHHHHHHHHHHTTEETTTTEE
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 7777776532 2222234444555555543 2345554
No 81
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.60 E-value=6.4 Score=24.26 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
...|..||..+|-. .+++|++||.+++..
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34566677666531 279999999998875
No 82
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=65.65 E-value=5.7 Score=32.44 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 6 SQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+++|-||++.||++.-. ++++.....+..++|++.-..+ ..|.+.+.+. ..|... .++..+..+.++.
T Consensus 110 ~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~-~~G~~~~~~~----~~~~~~----~~~~~n~~m~l~e 180 (402)
T 3gt5_A 110 NHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDA-EYGLYKDEAD----AQWNFT----RYRGQNANMHMCE 180 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEET-TTTEECCEEC----TTCCBC----SCEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCC-cCCCchhhhC----CCCCCC----CCCCCCHHHHHHH
Confidence 467999999999987322 2345667777778887753321 1343322111 123210 1122233344555
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHh
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILS 114 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~ 114 (151)
+|+++.+. .|.+.-.+.+++.++.++.
T Consensus 181 all~L~~~----tgd~~~~~~a~~l~~~~~~ 207 (402)
T 3gt5_A 181 AMLAAYEA----SGEQRYLERALVLADRITR 207 (402)
T ss_dssp HHHHHHHH----HCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh----hCCHHHHHHHHHHHHHHHH
Confidence 66665432 1333345566666776664
No 83
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=65.02 E-value=11 Score=33.48 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhcccCCC-------CccccC
Q 031897 101 EPERFYDAVNCILSLQSETG-------GVPAWE 126 (151)
Q Consensus 101 ~~~~l~rav~~Ll~~Qn~dG-------GW~~~~ 126 (151)
..++|++.+.+|+.+..+|| ..+.|.
T Consensus 342 ~~~~L~km~~~l~~l~~PDG~~~g~~~~lp~fn 374 (702)
T 4fnv_A 342 FTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMFN 374 (702)
T ss_dssp TTHHHHHHHHHHHHTSCGGGGSCCSSCCSCCCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccccCccC
Confidence 35799999999999999999 888874
No 84
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=64.86 E-value=5.9 Score=32.30 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh-hccCCCCCCCc
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKA-SQVTDNPQGDF 51 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~-~Q~~~~~~G~~ 51 (151)
.||+.+++++|+..+. ...++.+.-+.. .|.+ +|..
T Consensus 33 ~wDs~~~~~gl~~~~~-----~~a~~~l~~~~~~~q~~---~G~i 69 (420)
T 2z07_A 33 LWDSAFIALGWTQVDW-----ERAWQELLCLFDYGQGP---DGML 69 (420)
T ss_dssp HHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHHCCT---TCCC
T ss_pred HHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHhh---CCCc
Confidence 6999999999998663 234444444444 7876 4654
No 85
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.97 E-value=10 Score=24.19 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhccC
Q 031897 31 LMKAHDFLKASQVT 44 (151)
Q Consensus 31 i~rA~~~L~~~Q~~ 44 (151)
|.+|++||.+.+-+
T Consensus 58 ve~Ave~L~~~~~~ 71 (74)
T 1vej_A 58 IHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 78999999987654
No 86
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=61.50 E-value=27 Score=28.10 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhccC-CccccCCCCCHHHHHHHHHHHHhcccC-CCCccc
Q 031897 78 TAEALLCCLHFSMM-RPEIVGEKMEPERFYDAVNCILSLQSE-TGGVPA 124 (151)
Q Consensus 78 Ta~al~aL~~~~~~-~~~~~g~~~~~~~l~rav~~Ll~~Qn~-dGGW~~ 124 (151)
.+|++.+|..+-+. |.++-+++...+.+++-+++|+..|.+ ||-|..
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 58899999876542 211112222345677889999999997 999985
No 87
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.12 E-value=14 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLKASQVTD 45 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~ 45 (151)
..|..||...|.. -|+.|++||.+.-.++
T Consensus 24 erae~Alk~Tg~~-----Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 24 EMAGRALKQTGSR-----SIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhCcc-----cHHHHHHHHHHhcCCC
Confidence 3445555555532 2899999999876653
No 88
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.44 E-value=9.7 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
...|..||..+|-. .+++|++||.+++..
T Consensus 23 ~~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 23 RGRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 34566777776421 289999999998764
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.28 E-value=9.8 Score=21.12 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLKA 40 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~~ 40 (151)
..+..||..++- .+.+|++||.+
T Consensus 19 ~~a~~AL~~~~~------n~e~A~~~L~~ 41 (43)
T 2g3q_A 19 EEAHNALEKCNW------DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHHTS------CHHHHHHHHHT
T ss_pred HHHHHHHHHhCc------CHHHHHHHHHc
Confidence 345555555542 26788888875
No 90
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=58.98 E-value=9.9 Score=23.01 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=9.1
Q ss_pred HHHHHHHHHhh
Q 031897 31 LMKAHDFLKAS 41 (151)
Q Consensus 31 i~rA~~~L~~~ 41 (151)
|.+|++||.+.
T Consensus 46 ve~Ave~L~~~ 56 (58)
T 1wr1_B 46 VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 78999999864
No 91
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.66 E-value=15 Score=21.79 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhccC
Q 031897 31 LMKAHDFLKASQVT 44 (151)
Q Consensus 31 i~rA~~~L~~~Q~~ 44 (151)
|.+|++||.+....
T Consensus 38 v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 38 VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 78999999986543
No 92
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=57.23 E-value=10 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKA 40 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~ 40 (151)
.-.++.||.+++-+ +.+|++||.+
T Consensus 22 ~~~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 22 FDRNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHc
Confidence 33445555555422 7889999875
No 93
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=56.77 E-value=8.2 Score=22.66 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 031897 31 LMKAHDFLKA 40 (151)
Q Consensus 31 i~rA~~~L~~ 40 (151)
+.+|++||.+
T Consensus 41 ~e~A~e~L~~ 50 (52)
T 2jy5_A 41 INAAIERLLG 50 (52)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 7888888875
No 94
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=56.08 E-value=10 Score=35.30 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCccc
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ-SETGGVPA 124 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q-n~dGGW~~ 124 (151)
|++.++++|+.++ ..+..++.++||.+.| +++|.|..
T Consensus 333 Daa~t~~all~~G-----------~~e~A~~~l~~L~~~Q~~~~G~~~~ 370 (1020)
T 1ulv_A 333 DMYQSVTALLAAG-----------DEEAAARGVEWLFTYQQQPDGHFPQ 370 (1020)
T ss_dssp HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTCCTTSCCCS
T ss_pred hHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCCCCeee
Confidence 5778888888875 4567789999999999 99998753
No 95
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.55 E-value=8 Score=23.53 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 12 ALAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 12 ala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
..+..||..++- .+.+|++||.+++..
T Consensus 24 ~~a~~AL~~t~~------nve~A~e~L~~~~~d 50 (63)
T 2dak_A 24 DQALKALRATNN------SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHTTS------CSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhCCCC
Confidence 344555555542 278999999987654
No 96
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.52 E-value=14 Score=23.29 Aligned_cols=27 Identities=7% Similarity=-0.073 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 13 LAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 13 la~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
.+..||..++- .-+++|++||.+++..
T Consensus 25 ~a~~AL~~t~n-----~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 25 ACRKAVYYTGN-----SGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHTS-----CCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCC-----CCHHHHHHHHHhCCCC
Confidence 34455555442 1288999999998765
No 97
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=53.43 E-value=31 Score=29.09 Aligned_cols=78 Identities=19% Similarity=0.083 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 9 WDCALAIQALLAC---NLTD--EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 9 wdTala~~AL~~~---G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
=.++|.++|++.+ |.-. +--.++++.+++|.+.++- .|-|..+|...+.--=.|+..+ .+-++-+||.-+.
T Consensus 65 tniGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~l~~~~r~---~G~fyhwyD~~Tg~~lpf~~~d-~~~StVDTa~L~~ 140 (430)
T 3eu8_A 65 GGSGFGIMAILAGIDRGYVSREEGLRRMEKIVGFLEKADRF---KGAYPHWWNGETGHVQPFGQKD-NGGDLVETAFLMQ 140 (430)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCCB---TTBCCSEEETTTCCBCCBTTTB-CSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhchhc---CCcCccccCCCCCCcCCCCccc-CcccHHHHHHHHH
Confidence 3578888888665 5422 2346788999999976664 5777766543221111222222 2346778999999
Q ss_pred HHHHhcc
Q 031897 84 CCLHFSM 90 (151)
Q Consensus 84 aL~~~~~ 90 (151)
+|+.+++
T Consensus 141 GlL~ar~ 147 (430)
T 3eu8_A 141 GLLAVHQ 147 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 98
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.67 E-value=10 Score=21.95 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 031897 11 CALAIQALLACNLTDEIGPILMKAHDFLKAS 41 (151)
Q Consensus 11 Tala~~AL~~~G~~~~~~~~i~rA~~~L~~~ 41 (151)
-.-+..||..++-. +.+|++||.+.
T Consensus 22 ~~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 22 RERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 34455555555432 67899999863
No 99
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.07 E-value=16 Score=23.72 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhccC
Q 031897 31 LMKAHDFLKASQVT 44 (151)
Q Consensus 31 i~rA~~~L~~~Q~~ 44 (151)
+.+|++||.+++..
T Consensus 57 ve~A~ewL~~~~~d 70 (83)
T 2dai_A 57 VPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHCCCC
Confidence 78999999998764
No 100
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=47.84 E-value=9.2 Score=34.01 Aligned_cols=105 Identities=19% Similarity=0.056 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccC----CCCCc------cc------cccCCCCC-
Q 031897 9 WDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFR----HISKG------GW------TFSNKDHG- 71 (151)
Q Consensus 9 wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~----~~~~G------gW------~fs~~~~~- 71 (151)
.|+..++++|+ .+. ....++.+.+|.+.|.+ +|+...++. ...+| +| +......+
T Consensus 349 RD~~~~~~~l~-~~~----p~~ar~~l~~~~~~Q~~---~G~~~p~~~p~~~~~~~g~~~~~~~~~~~g~~~~~~~~~g~ 420 (807)
T 1v7w_A 349 RDTAQDAISVP-HAN----PEMTRKRIVDLLRGQVK---AGYGLHLFDPDWFDPEKEDVAPSKSPTVVPTPSDEDKIHGI 420 (807)
T ss_dssp HHHHHHTTSCT-TTC----HHHHHHHHHHHHHTBCT---TSCBCSEECGGGGCC----------------------CCCG
T ss_pred hHHhHHHHHHh-hcC----HHHHHHHHHHHHhcccc---CCCcceeeeeccccccccccCCccccccccCCCcchhhcCC
Confidence 57888887766 443 46788999999999998 465321111 00001 11 00000011
Q ss_pred -cccccchHHHHHHHHHhccCCcc--ccCCCCC---------HHHHHHHHHHHHhcccCCCC
Q 031897 72 -WQVSDCTAEALLCCLHFSMMRPE--IVGEKME---------PERFYDAVNCILSLQSETGG 121 (151)
Q Consensus 72 -~pd~d~Ta~al~aL~~~~~~~~~--~~g~~~~---------~~~l~rav~~Ll~~Qn~dGG 121 (151)
..-.|.+.+.+.++...-+..++ .+.+..+ -+.++++++|++....++|=
T Consensus 421 ~~~~~D~~lw~~~~~~~y~~~tGD~~~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~~~~GL 482 (807)
T 1v7w_A 421 KDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGI 482 (807)
T ss_dssp GGCBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCTTSC
T ss_pred CCCccchhhHHHHHHHHHHHHhCCHHHHhcccccccCCcchHHHHHHHHHHHHHhcCCCCCC
Confidence 01137888888887653221111 1111111 23599999999997777754
No 101
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.76 E-value=27 Score=22.63 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHcCCCCC--------ccHHHHHHHHHHHhhccC
Q 031897 8 TWDCALAIQALLACNLTDE--------IGPILMKAHDFLKASQVT 44 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~--------~~~~i~rA~~~L~~~Q~~ 44 (151)
.|----++.-|.+.|++.+ ....+.+|++||.++...
T Consensus 18 ~~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 4544445667777777532 001278899999987765
No 102
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.34 E-value=21 Score=23.03 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhccC
Q 031897 31 LMKAHDFLKASQVT 44 (151)
Q Consensus 31 i~rA~~~L~~~Q~~ 44 (151)
+.+|++||.+++..
T Consensus 58 ~e~A~ewL~~h~~d 71 (84)
T 1vek_A 58 VEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCc
Confidence 78999999998764
No 103
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=46.10 E-value=17 Score=31.69 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=27.6
Q ss_pred chHHHHHHHH----HhccCCccccCCCCCHHHHHHHHHHHHh---cc---cCCCCcc
Q 031897 77 CTAEALLCCL----HFSMMRPEIVGEKMEPERFYDAVNCILS---LQ---SETGGVP 123 (151)
Q Consensus 77 ~Ta~al~aL~----~~~~~~~~~~g~~~~~~~l~rav~~Ll~---~Q---n~dGGW~ 123 (151)
|.+.+++||+ .++ ..+..++..+||.. +| ++||+|.
T Consensus 54 Daa~t~~aL~~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~ 99 (599)
T 2vn4_A 54 DSALVFKNLIDRFTETY-----------DAGLQRRIEQYITAQVTLQGLSNPSGSLA 99 (599)
T ss_dssp HHHHHHHHHHHHHHHSB-----------CHHHHHHHHHHHHHHHHHHHCCBTTBCST
T ss_pred hHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHhcccceeeeeCCCCCcc
Confidence 6777888887 554 45677889999974 78 9999984
No 104
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=46.07 E-value=25 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=20.6
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCCCc
Q 031897 22 NLTDEIGPILMKAHDFLKASQVTDNPQGDF 51 (151)
Q Consensus 22 G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~ 51 (151)
|.+++-++.|..++.-++++=..+ .|+|
T Consensus 1 ~~p~~~D~rl~~al~qMl~MGF~n--egGW 28 (52)
T 1q02_A 1 GSPPEADPRLIESLSQMLSMGFSD--EGGW 28 (52)
T ss_dssp CCCTTSCHHHHHHHHHHHTTTCCC--TTSH
T ss_pred CCCCCcChHHHHHHHHHHHcCCCc--cccH
Confidence 445555799999999999877765 4444
No 105
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=43.47 E-value=23 Score=31.75 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhcc
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQV 43 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~ 43 (151)
.||+.+++.+|+.. . ....++.++.|...|.
T Consensus 323 ~wDs~~~a~gL~~~--~---~elAr~~L~~l~~~Q~ 353 (761)
T 3c68_A 323 PWDTWKQAFAMAHF--N---PDIAKENIRAVFSWQI 353 (761)
T ss_dssp HHHHHHHHHHHTTT--C---HHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHc--C---HHHHHHHHHHHHHhhh
Confidence 69999999998743 2 3567888999998884
No 106
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=42.80 E-value=85 Score=28.36 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHH
Q 031897 7 QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCL 86 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (151)
...|+....+||.... ...+++.+..+.+.|.. +|+....+.... +.+. ......-+|++.+-+.++.
T Consensus 365 G~RD~~qd~~~~~~~~-----pe~ar~~il~~~~~Q~~---dG~v~h~~~p~~--~~g~--~~~~~~~~D~~lWl~~av~ 432 (822)
T 3rrs_A 365 GFRDSNQDLLGFVHLI-----PERARERIIDIASTQFA---DGSAYHQYQPLT--KRGN--NDIGSGFNDDPLWLIAGTA 432 (822)
T ss_dssp EHHHHHHHHHHHTTTC-----HHHHHHHHHHHHTTCCT---TSCCCSEEETTT--TEEC--TTTCSCBTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhhcc---cCcccceecCcC--CCCc--cCCCCcccchHhHHHHHHH
Confidence 3578888889887542 46789999999999998 577654442111 1111 1111224788999999887
Q ss_pred HhccCCcc--ccCCCC-----------CHHHHHHHHHHHHhcccCCC
Q 031897 87 HFSMMRPE--IVGEKM-----------EPERFYDAVNCILSLQSETG 120 (151)
Q Consensus 87 ~~~~~~~~--~~g~~~-----------~~~~l~rav~~Ll~~Qn~dG 120 (151)
..-+..++ .+.+.+ --+-++|+++|++....++|
T Consensus 433 ~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 433 AYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 65221111 111111 13579999999997555543
No 107
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=42.34 E-value=10 Score=21.80 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 031897 9 WDCALAIQALLACNLTDEIGPILMKAHDFLKAS 41 (151)
Q Consensus 9 wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~ 41 (151)
++...|++||.+++-+ +.+|.+||.++
T Consensus 16 F~~~~a~~Al~a~~~n------~e~A~~~Lf~~ 42 (47)
T 1dv0_A 16 FPESLVIQAYFACEKN------ENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHHHHHTTTTSC------HHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHhC
Confidence 4556788899888843 68999999763
No 108
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=42.06 E-value=12 Score=30.89 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWE 126 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~ 126 (151)
++-.+.+|+.+.+. .+.+...+.++++++|+++.+.++|.|+...
T Consensus 233 ~aGI~~~Ll~~~~~----~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~ 277 (411)
T 3e6u_A 233 LAGIYYYLMQPSLQ----VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCI 277 (411)
T ss_dssp HHHHHHHHTCGGGC----CCHHHHHHTHHHHHHHHHHTCCTTSCCCSBT
T ss_pred HHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 44555566655431 1223335688999999999999999998754
No 109
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=41.88 E-value=23 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 031897 10 DCALAIQALLACNLTDEIGPILMKAHDFLKAS 41 (151)
Q Consensus 10 dTala~~AL~~~G~~~~~~~~i~rA~~~L~~~ 41 (151)
|...++.||.+++-+ |.+|++||.+.
T Consensus 80 d~~~ni~AL~~t~Gd------ve~AVe~L~~~ 105 (108)
T 2cwb_A 80 DDELSLRALQATGGD------IQAALELIFAG 105 (108)
T ss_dssp CHHHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCC------HHHHHHHHHhc
Confidence 344555555555421 78999999874
No 110
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=36.79 E-value=52 Score=30.04 Aligned_cols=96 Identities=9% Similarity=0.049 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHH
Q 031897 9 WDCALAIQALLA-CNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLH 87 (151)
Q Consensus 9 wdTala~~AL~~-~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (151)
+|+.+...+++. .|. ....++.+++|...|.. +|.+...+ +.+|. . ...|-+.+.+.++..
T Consensus 578 gD~~~~a~~~l~~~g~----~~lar~~L~~l~~~Q~~---dG~ip~~~----p~~~~-----~--~~~~~~~~~i~~~~~ 639 (956)
T 2okx_A 578 GDSRNEALVNYYVFGE----TEIVERCLNLVPGSADE---TPLYLDQV----PSAWS-----S--VIPNWTFFWILACRE 639 (956)
T ss_dssp HHHHHHHHHHHHHTCC----CHHHHHHHHHGGGGTTT---CTTCCSBS----SCSSC-----C--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhccc---CCCcCccc----ccccc-----C--CCcChHHHHHHHHHH
Confidence 389888877755 463 46789999999999987 46544222 22231 1 122445555555554
Q ss_pred hccCCccccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 031897 88 FSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 88 ~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW 122 (151)
..+..++..=....-+.++++++|+++..+++|=|
T Consensus 640 yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 640 YAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHTTBCTTSSB
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 32211110000113468999999999877777644
No 111
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=36.35 E-value=1.4e+02 Score=23.77 Aligned_cols=26 Identities=0% Similarity=-0.167 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhccc--CCCC-ccc
Q 031897 99 KMEPERFYDAVNCILSLQS--ETGG-VPA 124 (151)
Q Consensus 99 ~~~~~~l~rav~~Ll~~Qn--~dGG-W~~ 124 (151)
+...+.++++++|+++.+. ++|. |+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3456789999999977644 6787 876
No 112
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=32.63 E-value=95 Score=27.95 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHH
Q 031897 8 TWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLH 87 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (151)
..|+...++||.... ...+++.+..+.+.|.. +|+....+.... +.+.. .....-+|++.+-+.++..
T Consensus 359 ~RD~~qd~~~~~~~~-----p~~~r~~il~~~~~Q~~---dG~~~h~~~p~~--~~g~~--~~~~~~~D~~lW~i~av~~ 426 (811)
T 3qde_A 359 FRDSNQDLLGFVHQI-----PERARERLLDLAATQLE---DGSAYHQYQPLT--KKGNN--EIGSNFNDDPLWLILATAA 426 (811)
T ss_dssp HHHHHHHHHTTTTTC-----HHHHHHHHHHHHTTBCT---TSCBCSEECTTT--CCEEC--TTCCCBTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhccc---CCCccceecCCC--CCCCC--CCCCCcccchhHHHHHHHH
Confidence 478888888886442 46789999999999998 577654443111 11111 1112347889999898876
Q ss_pred hccCCcc--ccCCCC-----------CHHHHHHHHHHHHhcccCCC
Q 031897 88 FSMMRPE--IVGEKM-----------EPERFYDAVNCILSLQSETG 120 (151)
Q Consensus 88 ~~~~~~~--~~g~~~-----------~~~~l~rav~~Ll~~Qn~dG 120 (151)
.-+..++ .+.+.+ --+.++|+++|++....++|
T Consensus 427 Y~~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 427 YIKETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred HHHHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 5221111 111111 13578999999997555543
No 113
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=32.14 E-value=35 Score=23.67 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhc
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFS 89 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 89 (151)
....+.+..+|+..-+.+ .||.| .||-+.|..++++|+.-.
T Consensus 7 ~~~~~e~~~~f~ek~ae~----------------~G~~~------NpD~evt~~vi~GLa~nk 47 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKR----------------TDTYF------CSDLSVTAVVIEGLARHK 47 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH----------------TTCBC------BSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----------------hCCEE------CCCHHHHHHHHHHHHHHH
Confidence 367789999999887665 23444 588999999999999854
No 114
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=31.75 E-value=51 Score=17.38 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 031897 31 LMKAHDFL 38 (151)
Q Consensus 31 i~rA~~~L 38 (151)
+.+|++||
T Consensus 32 ~e~A~~~L 39 (40)
T 1z96_A 32 LDVAASFL 39 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555555
No 115
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=31.25 E-value=80 Score=25.63 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 6 SQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
-.+||-|+++.||++.-. .+.+...+.+.+++|++.=... ..|++.+......++- .+......-..++.
T Consensus 108 k~lyd~Af~i~al~~~~~tg~~~~l~~a~~~~~~l~~~~~d~-~~Ggf~~~~d~d~~~~-------~~~~~~n~~m~~~~ 179 (421)
T 2zbl_A 108 KQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSE-EEQMCLESWDEAFSQT-------EDYRGGNANMHAVE 179 (421)
T ss_dssp EEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEET-TTTEECCEECTTSCSB-------CSCEEHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHhccC-CCCCeeeeecCCCCcc-------cccCCCcHHHHHHH
Confidence 457899999999987411 2345777888889998743321 1455443321111110 01111122224466
Q ss_pred HHHHhccCCccccCCCCCHHHHHHHHHHHHhcc
Q 031897 84 CCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ 116 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q 116 (151)
+|+++.+.- |++.-.+..++.++.++...
T Consensus 180 al~~l~~~t----gd~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 180 AFLIVYDVT----HDKKWLDRALRIASVIIHDV 208 (421)
T ss_dssp HHHHHHHTT----CCTHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhh----CCHHHHHHHHHHHHHHHHHh
Confidence 666665432 33333455566777766543
No 116
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=30.61 E-value=48 Score=27.33 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHHHHHHHHH----HhhccCCCCCCCc-ccccCCCCCccccccCCCCCcccccchHH
Q 031897 6 SQTWDCALAIQALLACNLTDEIGPILMKAHDFL----KASQVTDNPQGDF-RSMFRHISKGGWTFSNKDHGWQVSDCTAE 80 (151)
Q Consensus 6 ~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L----~~~Q~~~~~~G~~-~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (151)
...|.|...++.++-+=+..+ ...+.++++.. +..|+.. +|.. .|..| .-+++| |..
T Consensus 219 ~NNhgtw~~~qvaaiAvfldD-~~l~~~ai~~f~~~~i~~qI~p--DG~qP~El~R---t~~~~Y------------s~f 280 (382)
T 3nnb_A 219 KNNHGLAYDVQLTAYALYTGN-QDLAMKTIQEFPEKRLFAQIEP--DGKQPLELAR---TTALGY------------TIF 280 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTHHHHSCT--TSCCHHHHTS---TBHHHH------------HHH
T ss_pred hCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHcCC--CCCCccccCC---CcchhH------------HHh
Confidence 356888887765544433444 67778888776 2356643 6654 22222 122333 334
Q ss_pred HHHHHHHhccCCccccCCCC------CHHHHHHHHHHHHhcc-cCCCCcccc
Q 031897 81 ALLCCLHFSMMRPEIVGEKM------EPERFYDAVNCILSLQ-SETGGVPAW 125 (151)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~------~~~~l~rav~~Ll~~Q-n~dGGW~~~ 125 (151)
+|.+|..+.++-. ..|+.. +...|++|++|+.... ...--|+.-
T Consensus 281 ~L~~l~~lA~~A~-~~G~DLw~y~~~~G~~L~kAleylapy~~~~~~~Wpy~ 331 (382)
T 3nnb_A 281 NLGHMLDMCSIAS-TLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQ 331 (382)
T ss_dssp HHHHHHHHHHHHH-TTTCCCTTCCCTTCCSHHHHHHHHGGGTTSCGGGCCSC
T ss_pred hHHHHHHHHHHHH-HcCCchhhccCCCchHHHHHHHHHHHhhccCCCCCCCc
Confidence 4444444322111 123332 2478999999999998 555678743
No 117
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=29.24 E-value=55 Score=27.22 Aligned_cols=21 Identities=5% Similarity=0.019 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcccCCCC
Q 031897 101 EPERFYDAVNCILSLQSETGG 121 (151)
Q Consensus 101 ~~~~l~rav~~Ll~~Qn~dGG 121 (151)
..+.++=+.|||++||.++|+
T Consensus 92 ~ldeikwg~D~llk~~~~~g~ 112 (433)
T 1ks8_A 92 GRKAVKWATDYFIKAHTSQNE 112 (433)
T ss_dssp HHHHHHHHHHHHHHHCCBTTB
T ss_pred HHHHHHHHHHHHHHhccCCCc
Confidence 456777888999999998875
No 118
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=28.66 E-value=1.9e+02 Score=24.12 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHH
Q 031897 10 DCALAIQALLAC---NLTD--EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLC 84 (151)
Q Consensus 10 dTala~~AL~~~---G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (151)
.++|.++|++.+ |.-. +--.++++.+++|.. +..+...|-|+.+|...+.-.-.+++.+. +-++-+|+.-+.+
T Consensus 56 niGf~L~a~~va~e~G~I~~~e~~~R~~~tL~~l~~-~~~~r~~G~fyhwyd~~Tg~~l~~~~~d~-~vStVDtg~L~~g 133 (424)
T 4gl3_A 56 GSGFGVMAIIVGIERGFVTREQGAERMLKIVRFLSD-KNTDSYHGMWAHWMNGKTGKTIPFSRKDD-GADIVESAFMFEG 133 (424)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHC-TTSCCBTTBCCSEEETTTCCEECSBTTBC-SEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-ccccccCCccccceeCCCCCCCCCcCCCC-cccHHHHHHHHHH
Confidence 467888887654 5421 234567888888842 22223367777666433322223333333 2356789999999
Q ss_pred HHHhcc
Q 031897 85 CLHFSM 90 (151)
Q Consensus 85 L~~~~~ 90 (151)
|+.+++
T Consensus 134 Ll~~~~ 139 (424)
T 4gl3_A 134 LLAAHQ 139 (424)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988865
No 119
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=28.44 E-value=43 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 031897 13 LAIQALLACNLTDEIGPILMKAHDFLKASQVT 44 (151)
Q Consensus 13 la~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 44 (151)
-+..||...|. + +.++++||..++..
T Consensus 24 ~~~kAl~~~g~--~----~e~amewL~~h~~L 49 (118)
T 4ae4_A 24 CVLRAMKAAGA--N----IEQILDYLFAHGQL 49 (118)
T ss_dssp HHHHHHHHHCS--C----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc--C----HHHHHHHHHHhchh
Confidence 34455555553 2 67899999998753
No 120
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=27.34 E-value=32 Score=30.15 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 031897 102 PERFYDAVNCILSLQSETGGV 122 (151)
Q Consensus 102 ~~~l~rav~~Ll~~Qn~dGGW 122 (151)
.+.++=++|||++||.++|++
T Consensus 193 ldE~rWg~D~llkm~~~~g~~ 213 (586)
T 3h7l_A 193 IEEALFGADFLVRMQNEKGFF 213 (586)
T ss_dssp HHHHHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHHHHHHHhcccCCCeE
Confidence 445667889999999999874
No 121
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=26.23 E-value=59 Score=26.86 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=48.2
Q ss_pred CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHH
Q 031897 26 EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERF 105 (151)
Q Consensus 26 ~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l 105 (151)
++.+.+.+|.++|.++=.+ .++.- -.|+.......++.+.++-..|.+|..+++. .|++...+..
T Consensus 134 ~~~~~~~~aA~~L~~r~~~---~~g~i--------qsw~~~~~~~~~~~iID~~mni~~L~~A~~~----~gd~~y~~~A 198 (397)
T 2zzr_A 134 KALEATIKAADKLMERYQE---KGGFI--------QAWGELGYKEHYRLIIDCLLNIQLLFFAYEQ----TGDEKYRQVA 198 (397)
T ss_dssp HHHHHHHHHHHHHHTTEET---TTTEE--------CCSSSTTCGGGCEEETTHHHHTHHHHHHHHH----HCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc---CCCEE--------EecccCCCCCCCceeechHhHHHHHHHHHHH----hCCHHHHHHH
Confidence 4688999999999876544 33332 1233111112257888999999999987653 2445455556
Q ss_pred HHHHHHHHhccc
Q 031897 106 YDAVNCILSLQS 117 (151)
Q Consensus 106 ~rav~~Ll~~Qn 117 (151)
+++.+.++...-
T Consensus 199 ~~ha~~~l~~~~ 210 (397)
T 2zzr_A 199 VNHFYASANNVV 210 (397)
T ss_dssp HHHHHHHHHHTB
T ss_pred HHHHHHHHHhCc
Confidence 666677766553
No 122
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=25.89 E-value=74 Score=25.34 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcc-c-CCCCcc
Q 031897 78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQ-S-ETGGVP 123 (151)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Q-n-~dGGW~ 123 (151)
.++++.|++.+.+.- |.+...+..++..+|+...- . ++|||=
T Consensus 316 qaea~~a~l~ly~~t----gd~~yl~~a~~~~~~~~~~f~D~~~G~w~ 359 (402)
T 1fp3_A 316 HSEAMIAFLMGYSES----GDPALLRLFYQVAEYTFRQFRDPEYGEWF 359 (402)
T ss_dssp HHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHTBCTTTSSBC
T ss_pred HHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhCcCCCCCceE
Confidence 468888888875421 22222334555666754433 3 468883
No 123
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=24.72 E-value=64 Score=25.85 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhh
Q 031897 7 QTWDCALAIQALLACNL---TDEIGPILMKAHDFLKAS 41 (151)
Q Consensus 7 ~~wdTala~~AL~~~G~---~~~~~~~i~rA~~~L~~~ 41 (151)
.-|-++.++.+|..+.. ++.|...+.+++.+++..
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~ 81 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNR 81 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 45888888888888643 234778888888888763
No 124
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=24.50 E-value=96 Score=25.80 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHHHHHHHHHhccCCccccCCCCCHHHH
Q 031897 26 EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERF 105 (151)
Q Consensus 26 ~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~l 105 (151)
.+...|++.++++...... +|||+.|- ..+.+-.-.+..++++++.... .+........
T Consensus 275 ~~~~~~~~~~~~~~~~~~~--------------tp~Gl~~~--~~WGs~~~~~~~a~l~~~~~~~-----~~~~~y~~~A 333 (441)
T 1ia6_A 275 IYKDAIEFNFNYWKTQVTT--------------TPGGLKWL--SNWGVLRYAAAESMVMLVYCKQ-----NPDQSLLDLA 333 (441)
T ss_dssp HHHHHHHHHHHHHHHTSCB--------------CTTSCBCC--CSTTHHHHHHHHHHHHHHHHHH-----SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc--------------CCCCceec--CCcchHHHHHHHHHHHHHHHhh-----cCHHHHHHHH
Confidence 3567788878777632222 22343331 1111222235566666654321 2333345667
Q ss_pred HHHHHHHHhcccC
Q 031897 106 YDAVNCILSLQSE 118 (151)
Q Consensus 106 ~rav~~Ll~~Qn~ 118 (151)
++.++||+.. ||
T Consensus 334 ~~qldYiLG~-NP 345 (441)
T 1ia6_A 334 KKQVDYILGD-NP 345 (441)
T ss_dssp HHHHHHHHTC-ST
T ss_pred HHHHHHhcCC-CC
Confidence 7899999984 44
No 125
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=23.75 E-value=80 Score=25.75 Aligned_cols=81 Identities=10% Similarity=-0.006 Sum_probs=50.5
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccC-CCCCcccccchHHHHHHHHHhccCCccccCCCCCHH
Q 031897 25 DEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSN-KDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPE 103 (151)
Q Consensus 25 ~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~-~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 103 (151)
+++.+.+.++.++|..+=.+ .++.- -.|+... ....++.+.||-+.|.+|..+++. .|++.-.+
T Consensus 107 ~~~~~~~~~aA~~L~~r~~~---~~g~i--------~sw~~~~~~~~~~~~iID~mmni~~L~~A~~~----~gd~~y~~ 171 (377)
T 2ahf_A 107 ESARKLALDAADVLMRRWRA---DAGII--------QAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQ----TGDPEYRR 171 (377)
T ss_dssp HHHHHHHHHHHHHHHTTEET---TTTEE--------CCBSSTTCTTTTTEEEGGGGGGHHHHHHHHHH----HCCTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC---CCCeE--------EeccCCCCCCCCceEEechHHHHHHHHHHHHH----hCCHHHHH
Confidence 34788999999999986554 33322 1243211 112246778888888899877653 35565666
Q ss_pred HHHHHHHHHHhcc-cCCC
Q 031897 104 RFYDAVNCILSLQ-SETG 120 (151)
Q Consensus 104 ~l~rav~~Ll~~Q-n~dG 120 (151)
..+++++++++.. .+||
T Consensus 172 ~A~~~a~~~l~~~~r~dg 189 (377)
T 2ahf_A 172 VAEAHALKSRRFLVRGDD 189 (377)
T ss_dssp HHHHHHHHHHHHTBBTTS
T ss_pred HHHHHHHHHHHhCcCCCC
Confidence 7777777887765 3344
No 126
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=22.72 E-value=1.7e+02 Score=23.69 Aligned_cols=25 Identities=8% Similarity=0.327 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccc
Q 031897 27 IGPILMKAHDFLKASQVTDNPQGDFRSM 54 (151)
Q Consensus 27 ~~~~i~rA~~~L~~~Q~~~~~~G~~~~~ 54 (151)
+.+.++++++|+.+.+.+ +|.|...
T Consensus 252 ~~~~i~~~l~~l~~~~~~---~g~wp~~ 276 (411)
T 3e6u_A 252 LHSLVKPSVDYVCQLKFP---SGNYPPC 276 (411)
T ss_dssp HHHTHHHHHHHHHHTCCT---TSCCCSB
T ss_pred HHHHHHHHHHHHHHhhcc---CCCCCCC
Confidence 556899999999999876 4667543
No 127
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=22.01 E-value=1e+02 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhcc
Q 031897 31 LMKAHDFLKASQV 43 (151)
Q Consensus 31 i~rA~~~L~~~Q~ 43 (151)
+.+|++||.++..
T Consensus 106 ~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 106 LERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHTCCS
T ss_pred HHHHHHHHHhCCC
Confidence 6788899987554
No 128
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.58 E-value=75 Score=19.02 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcccCCCC
Q 031897 103 ERFYDAVNCILSLQSETGG 121 (151)
Q Consensus 103 ~~l~rav~~Ll~~Qn~dGG 121 (151)
..+++||+-|+.++.++++
T Consensus 37 gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp TCHHHHHHHHHHSSCCCCS
T ss_pred CCHHHHHHHHHcCcCCCCC
Confidence 4588899999999988765
No 129
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=21.51 E-value=1.1e+02 Score=22.18 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhcc
Q 031897 8 TWDCALAIQALLACNLTD-EIGPILMKAHDFLKASQV 43 (151)
Q Consensus 8 ~wdTala~~AL~~~G~~~-~~~~~i~rA~~~L~~~Q~ 43 (151)
.-.|+.++++|+.+=-.. .+.=.=++|++||+..|-
T Consensus 90 AN~Tt~~L~l~Lr~ttelRt~sl~NR~AIDFLL~rwG 126 (167)
T 3s88_J 90 ANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWG 126 (167)
T ss_dssp HHHHHHHHHHHHHHCCCSEECTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 346889999998864321 245566899999998664
No 130
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=21.14 E-value=89 Score=26.42 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhccCCccccCCC--CCHHHHHHHHHH---HHhcccCCCCcc
Q 031897 77 CTAEALLCCLHFSMMRPEIVGEK--MEPERFYDAVNC---ILSLQSETGGVP 123 (151)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~--~~~~~l~rav~~---Ll~~Qn~dGGW~ 123 (151)
|.+.++.+|+.++.. +.. .-.+.+++-++| |.+..+++|.|.
T Consensus 70 Daa~t~~aL~~~g~~-----~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~ 116 (492)
T 2fba_A 70 DSAITFLTVLSELED-----NNFNTTLAKAVEYYINTSYNLQRTSNPSGSFD 116 (492)
T ss_dssp HHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTT
T ss_pred hHHHHHHHHHHhCcc-----cccccchHHHHHHHHHHHHHHhcccCCCCCcC
Confidence 567777888776521 000 014555666665 445558999997
No 131
>1qaz_A Protein (alginate lyase A1-III); crystals,; 1.78A {Sphingomonas SP} SCOP: a.102.3.1 PDB: 1hv6_A 3ew4_A* 4e25_A* 3evh_A 3evl_A* 4e1y_A 4e23_A*
Probab=20.93 E-value=1.5e+02 Score=24.06 Aligned_cols=101 Identities=9% Similarity=0.100 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHh--hccCCCCCCCcc-cccCCCCCccccccCCCCCcccccchHHHHH
Q 031897 8 TWDCALAIQALLACNL-TDEIGPILMKAHDFLKA--SQVTDNPQGDFR-SMFRHISKGGWTFSNKDHGWQVSDCTAEALL 83 (151)
Q Consensus 8 ~wdTala~~AL~~~G~-~~~~~~~i~rA~~~L~~--~Q~~~~~~G~~~-~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (151)
.+.|....+ +++.|+ ..+ +..+++++..+.+ .|+. ++|... |..|. ..++.| +..+|.
T Consensus 188 NHg~W~~~~-v~aiav~~~d-~~l~~~av~~~~~~~~QI~--~DG~~P~El~R~--t~s~~Y------------s~faL~ 249 (351)
T 1qaz_A 188 NHSYWRGQE-ATIIGVISKD-DELFRWGLGRYVQAMGLIN--EDGSFVHEMTRH--EQSLHY------------QNYAML 249 (351)
T ss_dssp HHHHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHHTTBC--TTSCBTTGGGSG--GGHHHH------------HHHHHH
T ss_pred cccHHHHHH-HHHHHHHcCC-HHHHHHHHHHHHHHHHhcC--CCCCCccccccC--CCchHH------------HHHHHH
Confidence 444444333 333443 333 6678888887754 4654 366542 11221 123333 556666
Q ss_pred HHHHhccCCccccCCCC-----CHHHHHHHHHHHHhcccCCCCccccCC
Q 031897 84 CCLHFSMMRPEIVGEKM-----EPERFYDAVNCILSLQSETGGVPAWEP 127 (151)
Q Consensus 84 aL~~~~~~~~~~~g~~~-----~~~~l~rav~~Ll~~Qn~dGGW~~~~~ 127 (151)
+|..+.+.-. ..|+.+ +-..++.|++|++..-.+.--|..|..
T Consensus 250 ~l~~lA~~a~-~~G~DL~~y~~dG~~l~~A~e~~~~~~~dp~~f~~~~g 297 (351)
T 1qaz_A 250 PLTMIAETAS-RQGIDLYAYKENGRDIHSARKFVFAAVKNPDLIKKYAS 297 (351)
T ss_dssp HHHHHHHHHH-TTTCCCTTCCSSSCCHHHHHHHHHHHHHCGGGGGGTCC
T ss_pred HHHHHHHHHH-HcCCCccccCcCCHHHHHHHHHHHHhccCCCcccccCc
Confidence 6665543211 123332 234578888999987666666766643
No 132
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=20.51 E-value=67 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHhcccC
Q 031897 100 MEPERFYDAVNCILSLQSE 118 (151)
Q Consensus 100 ~~~~~l~rav~~Ll~~Qn~ 118 (151)
.....|+.||+||...|..
T Consensus 42 sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 42 SKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3568899999999998864
Done!