Query 031899
Match_columns 151
No_of_seqs 253 out of 1764
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 100.0 8E-28 1.7E-32 161.6 12.7 113 39-151 14-128 (136)
2 KOG1530 Rhodanese-related sulf 99.9 3.1E-27 6.7E-32 153.0 10.7 114 37-150 20-135 (136)
3 cd01527 RHOD_YgaP Member of th 99.9 7.3E-27 1.6E-31 148.9 10.7 98 40-149 2-99 (99)
4 cd01533 4RHOD_Repeat_2 Member 99.9 1.8E-26 3.8E-31 149.7 12.1 98 37-146 7-109 (109)
5 PRK00162 glpE thiosulfate sulf 99.9 2.4E-26 5.2E-31 148.8 12.2 101 39-151 4-105 (108)
6 PRK11493 sseA 3-mercaptopyruva 99.9 9.1E-27 2E-31 173.8 11.6 146 6-151 109-279 (281)
7 PLN02723 3-mercaptopyruvate su 99.9 3.5E-26 7.6E-31 173.3 12.1 147 5-151 124-317 (320)
8 cd01518 RHOD_YceA Member of th 99.9 2.5E-26 5.5E-31 147.0 8.6 98 41-144 3-101 (101)
9 COG2897 SseA Rhodanese-related 99.9 1.2E-25 2.7E-30 166.0 12.1 144 8-151 114-282 (285)
10 cd01524 RHOD_Pyr_redox Member 99.9 4.5E-25 9.7E-30 138.4 10.7 89 42-143 1-89 (90)
11 cd01521 RHOD_PspE2 Member of t 99.9 6.4E-25 1.4E-29 142.6 11.4 99 38-149 6-110 (110)
12 cd01523 RHOD_Lact_B Member of 99.9 4.1E-25 8.8E-30 141.1 9.0 97 42-143 1-99 (100)
13 cd01520 RHOD_YbbB Member of th 99.9 8E-25 1.7E-29 145.8 10.5 102 42-144 1-126 (128)
14 PRK09629 bifunctional thiosulf 99.9 8.4E-25 1.8E-29 177.1 12.2 146 6-151 103-271 (610)
15 cd01519 RHOD_HSP67B2 Member of 99.9 7E-25 1.5E-29 141.3 9.5 101 43-144 2-106 (106)
16 cd01526 RHOD_ThiF Member of th 99.9 1.3E-24 2.7E-29 143.7 10.9 108 37-149 5-118 (122)
17 cd01534 4RHOD_Repeat_3 Member 99.9 1.4E-24 3E-29 137.5 10.2 90 42-144 1-95 (95)
18 cd01528 RHOD_2 Member of the R 99.9 2.5E-24 5.5E-29 137.7 10.9 91 42-144 2-98 (101)
19 cd01444 GlpE_ST GlpE sulfurtra 99.9 2.7E-24 5.8E-29 136.1 10.8 91 42-144 2-96 (96)
20 cd01535 4RHOD_Repeat_4 Member 99.9 2.5E-24 5.4E-29 146.1 10.7 91 48-150 3-95 (145)
21 cd01448 TST_Repeat_1 Thiosulfa 99.9 4.5E-24 9.7E-29 140.9 11.5 105 42-146 2-122 (122)
22 cd01447 Polysulfide_ST Polysul 99.9 2.8E-24 6.1E-29 137.6 9.8 101 42-146 1-103 (103)
23 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 6.7E-24 1.5E-28 146.4 12.0 111 38-149 34-162 (162)
24 cd01449 TST_Repeat_2 Thiosulfa 99.9 6.3E-24 1.4E-28 139.3 10.0 103 42-144 1-118 (118)
25 cd01525 RHOD_Kc Member of the 99.9 5.2E-24 1.1E-28 137.0 9.0 100 42-143 1-104 (105)
26 cd01522 RHOD_1 Member of the R 99.9 6.5E-24 1.4E-28 139.3 9.6 102 42-145 1-105 (117)
27 cd01530 Cdc25 Cdc25 phosphatas 99.9 1.4E-23 3.1E-28 138.4 10.3 92 41-143 3-120 (121)
28 smart00450 RHOD Rhodanese Homo 99.9 2.8E-23 6.1E-28 131.3 10.6 96 53-148 3-100 (100)
29 PF00581 Rhodanese: Rhodanese- 99.9 4.7E-23 1E-27 133.5 10.5 103 43-145 1-113 (113)
30 cd01529 4RHOD_Repeats Member o 99.9 3.4E-23 7.5E-28 131.3 9.0 87 52-144 10-96 (96)
31 PRK08762 molybdopterin biosynt 99.9 6.3E-23 1.4E-27 158.7 12.0 99 40-150 3-103 (376)
32 cd01445 TST_Repeats Thiosulfat 99.9 1.6E-22 3.5E-27 136.2 11.2 102 42-143 1-137 (138)
33 PRK11493 sseA 3-mercaptopyruva 99.9 2E-22 4.3E-27 150.5 12.0 112 40-151 5-135 (281)
34 cd01532 4RHOD_Repeat_1 Member 99.9 1.6E-22 3.5E-27 127.3 9.0 80 53-144 9-92 (92)
35 PLN02723 3-mercaptopyruvate su 99.9 3.2E-22 7E-27 151.7 12.1 113 39-151 21-151 (320)
36 PRK09629 bifunctional thiosulf 99.9 4.4E-22 9.5E-27 161.4 12.8 111 40-150 9-128 (610)
37 COG0607 PspE Rhodanese-related 99.9 1.1E-21 2.5E-26 126.7 9.8 87 53-151 19-108 (110)
38 PRK01415 hypothetical protein; 99.9 1.2E-21 2.6E-26 142.5 10.6 98 39-145 111-212 (247)
39 cd00158 RHOD Rhodanese Homolog 99.9 8.1E-22 1.8E-26 122.6 8.3 80 52-143 8-89 (89)
40 TIGR02981 phageshock_pspE phag 99.9 1.9E-21 4.1E-26 124.2 9.7 80 53-145 17-98 (101)
41 cd01531 Acr2p Eukaryotic arsen 99.9 1.6E-21 3.5E-26 127.1 9.1 97 40-145 2-112 (113)
42 PRK10287 thiosulfate:cyanide s 99.9 2.5E-21 5.3E-26 124.2 9.5 78 54-144 20-99 (104)
43 PRK05320 rhodanese superfamily 99.9 4.3E-21 9.3E-26 141.1 11.3 102 38-145 108-216 (257)
44 PRK07878 molybdopterin biosynt 99.9 7.1E-21 1.5E-25 147.8 11.5 100 39-148 286-387 (392)
45 PRK00142 putative rhodanese-re 99.8 2.3E-20 4.9E-25 140.9 10.7 99 39-145 111-212 (314)
46 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 1.3E-20 2.7E-25 122.9 7.9 95 40-143 2-112 (113)
47 PRK07411 hypothetical protein; 99.8 6.2E-20 1.3E-24 142.4 11.4 104 38-149 280-386 (390)
48 PRK11784 tRNA 2-selenouridine 99.8 4.4E-20 9.5E-25 140.7 9.6 105 43-148 4-132 (345)
49 COG2897 SseA Rhodanese-related 99.8 3.7E-19 8E-24 131.7 12.0 114 38-151 9-138 (285)
50 PRK05597 molybdopterin biosynt 99.8 2.2E-19 4.7E-24 137.9 10.7 95 39-145 260-355 (355)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1E-19 2.3E-24 136.9 8.7 95 54-149 2-119 (311)
52 cd01446 DSP_MapKP N-terminal r 99.8 7.7E-19 1.7E-23 117.4 9.9 102 42-145 2-127 (132)
53 PRK05600 thiamine biosynthesis 99.7 7.2E-18 1.6E-22 129.9 8.5 94 40-140 271-369 (370)
54 KOG1529 Mercaptopyruvate sulfu 99.7 3.1E-16 6.8E-21 114.5 9.8 136 8-144 112-275 (286)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.6 1.8E-15 3.9E-20 120.5 9.7 78 47-136 400-481 (482)
56 COG1054 Predicted sulfurtransf 99.5 2.7E-14 5.9E-19 104.9 5.1 101 39-145 112-213 (308)
57 KOG3772 M-phase inducer phosph 99.5 1.1E-13 2.3E-18 103.2 7.4 97 38-145 154-276 (325)
58 KOG1529 Mercaptopyruvate sulfu 99.5 4.3E-13 9.4E-18 98.1 10.4 112 40-151 5-136 (286)
59 KOG2017 Molybdopterin synthase 99.4 4.1E-13 8.9E-18 100.6 6.7 105 38-149 315-423 (427)
60 COG5105 MIH1 Mitotic inducer, 99.0 2.3E-09 5E-14 79.8 7.0 97 38-145 240-358 (427)
61 COG2603 Predicted ATPase [Gene 97.9 1E-05 2.2E-10 60.0 3.1 100 43-143 4-127 (334)
62 PF04273 DUF442: Putative phos 97.8 0.00034 7.4E-09 45.2 8.2 77 40-123 13-105 (110)
63 TIGR01244 conserved hypothetic 97.7 0.00041 8.9E-09 46.4 8.4 86 40-130 13-113 (135)
64 TIGR03167 tRNA_sel_U_synt tRNA 97.5 0.00021 4.4E-09 54.4 4.6 101 5-115 95-207 (311)
65 PRK00142 putative rhodanese-re 96.8 0.00015 3.3E-09 55.2 -1.3 85 40-133 14-105 (314)
66 KOG1093 Predicted protein kina 96.8 0.00043 9.2E-09 56.0 1.0 94 39-143 621-719 (725)
67 PF13350 Y_phosphatase3: Tyros 96.5 0.054 1.2E-06 37.2 9.5 95 37-131 25-153 (164)
68 KOG3636 Uncharacterized conser 95.9 0.025 5.3E-07 44.9 5.9 82 55-143 327-427 (669)
69 PRK08762 molybdopterin biosynt 95.8 0.016 3.4E-07 45.3 4.5 93 5-139 77-169 (376)
70 KOG1717 Dual specificity phosp 95.2 0.017 3.7E-07 42.8 2.5 100 41-145 5-124 (343)
71 PRK11784 tRNA 2-selenouridine 94.5 0.09 2E-06 40.7 5.1 61 6-67 110-178 (345)
72 COG3453 Uncharacterized protei 94.2 0.51 1.1E-05 30.9 7.3 81 39-125 13-108 (130)
73 smart00195 DSPc Dual specifici 93.7 0.34 7.3E-06 32.0 6.1 81 47-130 19-107 (138)
74 PLN02727 NAD kinase 93.4 0.49 1.1E-05 41.1 7.8 72 40-116 267-353 (986)
75 cd00127 DSPc Dual specificity 93.3 0.45 9.8E-06 31.2 6.2 80 47-129 20-109 (139)
76 PF03853 YjeF_N: YjeF-related 89.6 1.6 3.5E-05 30.2 6.0 32 102-134 23-57 (169)
77 PF09992 DUF2233: Predicted pe 87.0 0.85 1.9E-05 31.3 3.3 40 102-141 98-142 (170)
78 PF00782 DSPc: Dual specificit 86.4 3.5 7.6E-05 26.8 5.9 80 50-129 14-101 (133)
79 COG2453 CDC14 Predicted protei 86.4 1.5 3.3E-05 30.6 4.3 29 101-129 102-133 (180)
80 COG0062 Uncharacterized conser 86.1 3.6 7.8E-05 29.5 6.1 37 98-135 41-82 (203)
81 PF05706 CDKN3: Cyclin-depende 85.5 0.72 1.6E-05 32.0 2.2 84 45-128 62-159 (168)
82 PRK12361 hypothetical protein; 85.0 3.2 7E-05 34.2 6.2 79 43-125 109-198 (547)
83 PTZ00242 protein tyrosine phos 84.6 7.4 0.00016 26.9 7.0 27 102-128 96-124 (166)
84 COG1891 Uncharacterized protei 84.2 9.1 0.0002 27.0 7.1 26 40-65 6-31 (235)
85 KOG0333 U5 snRNP-like RNA heli 84.2 2.5 5.5E-05 34.8 5.0 47 92-139 503-551 (673)
86 PLN03050 pyridoxine (pyridoxam 82.2 2.9 6.3E-05 30.9 4.4 30 105-135 61-93 (246)
87 COG2519 GCD14 tRNA(1-methylade 81.9 3.2 6.9E-05 30.8 4.4 46 88-133 172-217 (256)
88 PRK10565 putative carbohydrate 81.6 5.3 0.00011 32.7 6.1 35 100-135 56-93 (508)
89 TIGR00197 yjeF_nterm yjeF N-te 81.3 6.6 0.00014 28.1 5.9 36 99-135 40-78 (205)
90 PLN03049 pyridoxine (pyridoxam 81.2 5.4 0.00012 32.3 5.9 30 105-135 60-92 (462)
91 PF03162 Y_phosphatase2: Tyros 80.3 3.8 8.3E-05 28.3 4.3 41 90-130 75-119 (164)
92 TIGR01587 cas3_core CRISPR-ass 80.2 4.5 9.8E-05 31.1 5.1 48 93-140 211-259 (358)
93 PRK12898 secA preprotein trans 79.7 10 0.00023 32.1 7.2 36 103-139 472-507 (656)
94 PTZ00393 protein tyrosine phos 78.9 7.3 0.00016 28.7 5.4 82 44-130 106-198 (241)
95 PLN02918 pyridoxine (pyridoxam 78.3 7.4 0.00016 32.2 5.9 30 105-135 136-168 (544)
96 COG2185 Sbm Methylmalonyl-CoA 77.2 12 0.00027 25.3 5.8 39 101-139 60-102 (143)
97 PF02590 SPOUT_MTase: Predicte 76.6 8.9 0.00019 26.3 5.1 48 94-141 57-109 (155)
98 TIGR00853 pts-lac PTS system, 76.2 4.9 0.00011 25.1 3.5 38 104-142 3-44 (95)
99 cd00079 HELICc Helicase superf 75.6 11 0.00023 23.9 5.2 36 103-139 27-62 (131)
100 PF07755 DUF1611: Protein of u 74.9 6.8 0.00015 29.9 4.5 41 104-145 111-157 (301)
101 COG0513 SrmB Superfamily II DN 73.8 8.7 0.00019 31.5 5.2 34 106-140 275-308 (513)
102 TIGR00640 acid_CoA_mut_C methy 73.5 15 0.00033 24.3 5.6 14 48-61 23-37 (132)
103 PTZ00110 helicase; Provisional 73.0 10 0.00022 31.4 5.5 37 103-140 376-412 (545)
104 KOG0330 ATP-dependent RNA heli 73.0 6.4 0.00014 31.3 4.0 46 94-141 291-336 (476)
105 PRK10310 PTS system galactitol 72.8 12 0.00026 23.2 4.6 36 106-142 4-44 (94)
106 cd02071 MM_CoA_mut_B12_BD meth 72.7 15 0.00032 23.8 5.3 10 53-62 26-35 (122)
107 PRK09590 celB cellobiose phosp 72.6 6 0.00013 25.2 3.3 37 105-142 2-42 (104)
108 TIGR00614 recQ_fam ATP-depende 72.6 9 0.00019 30.9 5.0 37 103-140 225-261 (470)
109 PRK05298 excinuclease ABC subu 72.2 8.2 0.00018 32.7 4.9 47 93-140 435-481 (652)
110 COG0514 RecQ Superfamily II DN 70.4 8.4 0.00018 32.2 4.4 37 103-140 229-265 (590)
111 cd05565 PTS_IIB_lactose PTS_II 68.7 7.2 0.00016 24.6 3.0 36 106-142 2-41 (99)
112 TIGR00201 comF comF family pro 68.6 11 0.00023 26.5 4.2 33 103-135 151-186 (190)
113 COG4822 CbiK Cobalamin biosynt 68.3 20 0.00042 26.3 5.3 44 92-135 122-173 (265)
114 KOG0352 ATP-dependent DNA heli 68.3 4.9 0.00011 32.4 2.6 42 107-149 258-308 (641)
115 TIGR00631 uvrb excinuclease AB 68.0 13 0.00027 31.7 5.1 47 93-140 431-477 (655)
116 PF02302 PTS_IIB: PTS system, 67.9 9.1 0.0002 23.0 3.3 25 106-130 1-30 (90)
117 cd05564 PTS_IIB_chitobiose_lic 67.7 7.7 0.00017 24.1 3.0 36 106-142 1-40 (96)
118 PRK11057 ATP-dependent DNA hel 66.9 8.7 0.00019 32.2 3.9 37 103-140 235-271 (607)
119 PRK04837 ATP-dependent RNA hel 66.7 10 0.00022 30.0 4.2 35 104-139 255-289 (423)
120 PRK00103 rRNA large subunit me 66.4 27 0.00058 24.0 5.6 50 93-142 56-110 (157)
121 PRK11776 ATP-dependent RNA hel 66.2 9.4 0.0002 30.6 3.9 36 104-140 242-277 (460)
122 TIGR02689 ars_reduc_gluta arse 66.0 14 0.00031 24.0 4.2 34 106-139 2-36 (126)
123 PRK07688 thiamine/molybdopteri 65.6 4.9 0.00011 31.1 2.1 35 39-74 276-317 (339)
124 PRK04537 ATP-dependent RNA hel 65.5 9.6 0.00021 31.7 3.9 37 103-140 256-292 (572)
125 PRK11192 ATP-dependent RNA hel 65.2 13 0.00028 29.5 4.5 37 103-140 244-280 (434)
126 TIGR01389 recQ ATP-dependent D 65.2 16 0.00035 30.4 5.2 36 104-140 224-259 (591)
127 PF01488 Shikimate_DH: Shikima 65.1 18 0.0004 23.8 4.6 35 104-139 12-46 (135)
128 COG0034 PurF Glutamine phospho 65.0 12 0.00025 30.3 4.1 35 103-137 347-384 (470)
129 PLN03137 ATP-dependent DNA hel 64.9 14 0.00031 33.4 5.0 36 104-140 680-715 (1195)
130 TIGR03372 putres_am_tran putre 64.9 14 0.00031 29.7 4.6 43 101-143 130-177 (442)
131 KOG0331 ATP-dependent RNA heli 64.1 18 0.00039 29.8 5.1 37 103-140 340-376 (519)
132 KOG0332 ATP-dependent RNA heli 63.9 9 0.0002 30.4 3.2 33 107-140 333-365 (477)
133 COG2518 Pcm Protein-L-isoaspar 63.4 12 0.00026 27.0 3.6 24 122-145 112-136 (209)
134 PF00156 Pribosyltran: Phospho 61.6 19 0.00041 22.9 4.1 32 103-134 87-121 (125)
135 PRK10499 PTS system N,N'-diace 61.4 14 0.00031 23.5 3.4 26 105-130 4-33 (106)
136 PRK13104 secA preprotein trans 61.3 21 0.00046 31.5 5.2 41 101-142 441-481 (896)
137 TIGR02804 ExbD_2 TonB system t 61.1 42 0.00091 21.7 6.5 44 92-135 72-118 (121)
138 PF08704 GCD14: tRNA methyltra 61.1 8.2 0.00018 28.6 2.5 45 92-136 126-171 (247)
139 cd05567 PTS_IIB_mannitol PTS_I 61.0 15 0.00032 22.2 3.3 34 106-140 2-40 (87)
140 PF14566 PTPlike_phytase: Inos 60.5 33 0.00071 23.1 5.2 34 85-118 102-139 (149)
141 PF03610 EIIA-man: PTS system 60.3 42 0.0009 21.3 6.3 43 93-137 46-90 (116)
142 PRK10590 ATP-dependent RNA hel 60.2 13 0.00029 29.8 3.8 36 104-140 245-280 (456)
143 PRK13802 bifunctional indole-3 60.2 48 0.001 28.5 7.1 89 42-132 144-237 (695)
144 PRK13809 orotate phosphoribosy 60.0 35 0.00075 24.5 5.5 50 101-150 115-173 (206)
145 cd00115 LMWPc Substituted upda 59.8 10 0.00022 25.1 2.6 36 106-141 2-39 (141)
146 COG1576 Uncharacterized conser 59.8 40 0.00087 23.2 5.4 47 93-140 56-107 (155)
147 PF13344 Hydrolase_6: Haloacid 59.7 35 0.00075 21.3 4.9 28 103-130 29-57 (101)
148 PF07879 PHB_acc_N: PHB/PHA ac 59.6 17 0.00036 21.0 3.0 27 39-65 17-45 (64)
149 PRK08117 4-aminobutyrate amino 58.9 22 0.00048 28.3 4.8 45 99-143 97-143 (433)
150 PRK09200 preprotein translocas 58.7 25 0.00054 30.6 5.2 38 102-140 426-463 (790)
151 KOG0572 Glutamine phosphoribos 58.6 18 0.0004 28.7 4.0 32 103-134 355-389 (474)
152 PF00218 IGPS: Indole-3-glycer 58.1 8 0.00017 28.8 2.0 91 41-133 141-236 (254)
153 TIGR00963 secA preprotein tran 58.1 24 0.00052 30.5 5.0 36 102-138 403-438 (745)
154 PRK07199 phosphoribosylpyropho 57.7 21 0.00045 27.2 4.2 33 103-135 210-245 (301)
155 PRK12906 secA preprotein trans 57.5 29 0.00063 30.3 5.4 38 102-140 438-475 (796)
156 PF14572 Pribosyl_synth: Phosp 57.1 21 0.00045 25.3 3.8 33 103-135 82-117 (184)
157 PRK09162 hypoxanthine-guanine 56.7 22 0.00047 24.8 4.0 33 103-135 96-131 (181)
158 PF13399 LytR_C: LytR cell env 56.6 29 0.00062 20.9 4.1 27 105-131 4-32 (90)
159 KOG0685 Flavin-containing amin 55.9 25 0.00053 28.8 4.5 35 103-138 20-54 (498)
160 smart00012 PTPc_DSPc Protein t 55.5 31 0.00068 20.7 4.2 16 103-118 38-54 (105)
161 smart00404 PTPc_motif Protein 55.5 31 0.00068 20.7 4.2 16 103-118 38-54 (105)
162 TIGR03158 cas3_cyano CRISPR-as 55.3 37 0.0008 26.4 5.4 40 103-142 271-311 (357)
163 PRK13530 arsenate reductase; P 54.8 29 0.00063 22.9 4.1 35 105-139 4-39 (133)
164 COG2085 Predicted dinucleotide 54.8 80 0.0017 22.9 7.5 28 104-131 147-175 (211)
165 PRK03092 ribose-phosphate pyro 54.7 39 0.00084 25.8 5.3 44 103-146 200-253 (304)
166 PF00289 CPSase_L_chain: Carba 54.6 16 0.00036 23.3 2.8 29 108-136 5-33 (110)
167 PRK06148 hypothetical protein; 54.6 24 0.00053 31.6 4.7 44 101-144 676-721 (1013)
168 COG1157 FliI Flagellar biosynt 54.5 48 0.001 26.7 5.8 53 92-145 206-268 (441)
169 PRK09694 helicase Cas3; Provis 54.0 42 0.00091 29.7 5.9 49 92-140 548-598 (878)
170 PRK04914 ATP-dependent helicas 53.9 24 0.00051 31.5 4.4 36 104-140 493-529 (956)
171 PF00899 ThiF: ThiF family; I 53.9 25 0.00054 22.9 3.7 35 108-142 5-39 (135)
172 TIGR03714 secA2 accessory Sec 53.8 37 0.0008 29.5 5.4 39 102-141 422-460 (762)
173 PRK06781 amidophosphoribosyltr 53.8 25 0.00055 28.6 4.3 35 103-137 347-384 (471)
174 COG0529 CysC Adenylylsulfate k 53.8 38 0.00083 24.1 4.6 21 117-138 40-60 (197)
175 PRK04923 ribose-phosphate pyro 53.7 29 0.00062 26.8 4.4 33 103-135 216-251 (319)
176 COG1040 ComFC Predicted amidop 53.7 24 0.00053 25.6 3.9 31 105-135 185-218 (225)
177 PRK06917 hypothetical protein; 53.4 37 0.0008 27.3 5.2 49 95-143 81-137 (447)
178 PRK11595 DNA utilization prote 53.3 29 0.00063 25.1 4.3 33 103-135 186-221 (227)
179 KOG2424 Protein involved in tr 53.3 21 0.00046 25.2 3.3 30 105-135 6-36 (195)
180 PRK14665 mnmA tRNA-specific 2- 53.2 31 0.00067 27.1 4.6 30 101-130 2-31 (360)
181 COG0462 PrsA Phosphoribosylpyr 53.2 32 0.0007 26.5 4.5 32 104-135 214-248 (314)
182 cd00133 PTS_IIB PTS_IIB: subun 53.2 20 0.00044 20.6 3.0 24 106-129 1-29 (84)
183 PRK09246 amidophosphoribosyltr 53.0 27 0.00058 28.7 4.4 34 103-136 357-393 (501)
184 PTZ00424 helicase 45; Provisio 52.9 26 0.00057 27.3 4.3 36 104-140 267-302 (401)
185 PRK01297 ATP-dependent RNA hel 52.7 24 0.00051 28.5 4.1 37 104-141 335-371 (475)
186 COG1204 Superfamily II helicas 52.7 67 0.0015 28.0 6.8 85 41-125 190-274 (766)
187 TIGR00537 hemK_rel_arch HemK-r 51.8 43 0.00094 22.9 4.8 46 93-138 122-167 (179)
188 PRK14994 SAM-dependent 16S rib 51.8 1E+02 0.0023 23.3 10.2 105 37-149 22-136 (287)
189 PRK11391 etp phosphotyrosine-p 51.6 22 0.00048 23.8 3.2 37 105-142 3-40 (144)
190 PRK13107 preprotein translocas 51.6 38 0.00083 30.0 5.2 39 102-141 447-485 (908)
191 PF01206 TusA: Sulfurtransfera 50.7 46 0.00099 18.9 4.6 38 93-130 16-53 (70)
192 COG4992 ArgD Ornithine/acetylo 50.6 32 0.0007 27.4 4.3 36 104-139 99-139 (404)
193 COG1165 MenD 2-succinyl-6-hydr 50.2 18 0.00039 30.0 3.0 62 71-133 29-99 (566)
194 PRK13812 orotate phosphoribosy 50.1 63 0.0014 22.5 5.4 50 101-150 104-162 (176)
195 PF02879 PGM_PMM_II: Phosphogl 50.0 51 0.0011 20.3 4.6 30 104-133 21-50 (104)
196 PRK10126 tyrosine phosphatase; 49.8 23 0.0005 23.7 3.1 35 105-140 3-38 (147)
197 PF04122 CW_binding_2: Putativ 49.8 28 0.0006 21.1 3.2 34 103-139 49-82 (92)
198 PLN02460 indole-3-glycerol-pho 49.7 1.2E+02 0.0027 23.6 8.4 90 42-132 214-314 (338)
199 cd05563 PTS_IIB_ascorbate PTS_ 49.4 25 0.00055 20.9 3.0 24 106-129 1-29 (86)
200 COG3414 SgaB Phosphotransferas 49.2 34 0.00074 21.3 3.5 26 105-130 2-32 (93)
201 PF00590 TP_methylase: Tetrapy 49.2 87 0.0019 21.8 6.2 109 38-150 11-130 (210)
202 PRK02458 ribose-phosphate pyro 48.7 32 0.00069 26.6 4.0 33 103-135 217-252 (323)
203 COG5211 SSU72 RNA polymerase I 48.5 27 0.00059 24.1 3.2 31 104-135 6-37 (197)
204 PRK05922 type III secretion sy 48.5 84 0.0018 25.4 6.4 53 92-145 200-262 (434)
205 KOG1352 Vacuolar H+-ATPase V1 48.4 32 0.00069 27.7 3.9 44 70-126 249-292 (618)
206 PRK11634 ATP-dependent RNA hel 48.2 28 0.0006 29.5 3.9 35 104-139 245-279 (629)
207 TIGR01848 PHA_reg_PhaR polyhyd 48.0 33 0.00072 22.0 3.3 27 39-65 17-45 (107)
208 TIGR00246 tRNA_RlmH_YbeA rRNA 47.9 78 0.0017 21.6 5.4 46 94-141 56-106 (153)
209 TIGR00336 pyrE orotate phospho 47.6 60 0.0013 22.4 5.0 50 101-150 105-165 (173)
210 PRK05964 adenosylmethionine--8 47.6 54 0.0012 26.0 5.3 43 101-143 98-148 (423)
211 PRK02269 ribose-phosphate pyro 47.3 37 0.0008 26.1 4.2 32 103-134 216-250 (320)
212 PRK13810 orotate phosphoribosy 47.3 60 0.0013 22.9 4.9 51 100-150 118-177 (187)
213 PRK06916 adenosylmethionine--8 47.0 46 0.001 26.9 4.9 47 97-143 108-162 (460)
214 PF02254 TrkA_N: TrkA-N domain 46.8 40 0.00086 21.0 3.7 20 106-129 23-42 (116)
215 PRK04192 V-type ATP synthase s 46.5 40 0.00086 28.4 4.4 29 117-146 312-340 (586)
216 TIGR02691 arsC_pI258_fam arsen 46.2 34 0.00073 22.5 3.4 12 118-129 41-52 (129)
217 cd01423 MGS_CPS_I_III Methylgl 46.2 66 0.0014 20.4 4.7 31 117-148 15-45 (116)
218 PRK13957 indole-3-glycerol-pho 46.1 1.2E+02 0.0026 22.5 6.7 88 42-132 135-227 (247)
219 PRK12904 preprotein translocas 46.1 49 0.0011 29.1 5.0 36 102-138 428-463 (830)
220 cd05566 PTS_IIB_galactitol PTS 46.1 33 0.00072 20.5 3.2 24 106-129 2-30 (89)
221 PRK09426 methylmalonyl-CoA mut 46.1 40 0.00087 29.1 4.5 38 102-139 631-672 (714)
222 PRK07631 amidophosphoribosyltr 46.0 34 0.00075 27.9 4.0 34 103-136 347-383 (475)
223 KOG0326 ATP-dependent RNA heli 45.6 38 0.00083 26.5 3.9 35 95-130 314-348 (459)
224 PRK05639 4-aminobutyrate amino 45.5 45 0.00097 27.0 4.6 43 101-143 109-153 (457)
225 cd05568 PTS_IIB_bgl_like PTS_I 45.3 39 0.00085 19.8 3.4 22 106-127 2-24 (85)
226 cd03422 YedF YedF is a bacteri 45.1 60 0.0013 18.6 5.1 38 93-130 15-52 (69)
227 PRK07349 amidophosphoribosyltr 44.9 42 0.00091 27.7 4.3 33 103-135 376-411 (500)
228 PRK08341 amidophosphoribosyltr 44.8 38 0.00082 27.4 4.0 33 103-135 333-368 (442)
229 COG0162 TyrS Tyrosyl-tRNA synt 44.6 21 0.00045 28.5 2.5 39 106-145 32-80 (401)
230 COG0394 Wzb Protein-tyrosine-p 44.5 39 0.00085 22.6 3.5 36 105-140 3-39 (139)
231 PRK00615 glutamate-1-semialdeh 44.4 47 0.001 26.6 4.5 49 95-143 100-150 (433)
232 PF02863 Arg_repressor_C: Argi 44.4 43 0.00094 19.4 3.3 25 102-126 45-69 (70)
233 PRK10637 cysG siroheme synthas 43.9 1.7E+02 0.0038 23.6 8.6 110 38-149 227-344 (457)
234 COG1440 CelA Phosphotransferas 43.9 37 0.00081 21.6 3.1 21 105-125 2-22 (102)
235 PRK07481 hypothetical protein; 43.8 48 0.001 26.7 4.5 40 105-144 104-151 (449)
236 PRK06388 amidophosphoribosyltr 43.6 41 0.00088 27.5 4.1 34 103-136 355-391 (474)
237 PRK12560 adenine phosphoribosy 43.6 85 0.0018 22.1 5.3 49 101-149 111-170 (187)
238 cd01134 V_A-ATPase_A V/A-type 43.2 52 0.0011 26.0 4.4 28 117-145 242-269 (369)
239 PRK05965 hypothetical protein; 43.2 63 0.0014 26.1 5.1 48 96-143 98-153 (459)
240 PRK08297 L-lysine aminotransfe 43.2 62 0.0013 26.0 5.0 41 103-143 108-162 (443)
241 COG4671 Predicted glycosyl tra 42.7 41 0.0009 26.5 3.8 34 105-139 10-51 (400)
242 PRK13811 orotate phosphoribosy 42.6 74 0.0016 21.9 4.8 48 103-150 103-159 (170)
243 PRK00553 ribose-phosphate pyro 42.5 51 0.0011 25.6 4.3 33 103-135 217-252 (332)
244 PRK11018 hypothetical protein; 42.5 73 0.0016 18.9 5.1 38 93-130 24-61 (78)
245 PF02780 Transketolase_C: Tran 42.5 54 0.0012 21.0 3.9 31 103-134 8-40 (124)
246 PRK05793 amidophosphoribosyltr 42.3 47 0.001 27.0 4.3 34 103-136 352-388 (469)
247 PRK06062 hypothetical protein; 42.1 53 0.0011 26.5 4.5 43 101-143 108-152 (451)
248 PRK00121 trmB tRNA (guanine-N( 42.1 78 0.0017 22.3 5.0 48 91-139 136-183 (202)
249 PRK06918 4-aminobutyrate amino 41.8 61 0.0013 26.0 4.8 38 106-143 116-155 (451)
250 PRK13360 omega amino acid--pyr 41.6 57 0.0012 26.2 4.6 43 101-143 102-152 (442)
251 PRK00934 ribose-phosphate pyro 41.2 54 0.0012 24.7 4.2 33 103-135 203-238 (285)
252 PLN02482 glutamate-1-semialdeh 41.1 56 0.0012 26.6 4.5 38 106-143 156-195 (474)
253 PRK07986 adenosylmethionine--8 41.0 67 0.0015 25.7 4.9 43 101-143 99-148 (428)
254 PRK08525 amidophosphoribosyltr 41.0 48 0.001 26.8 4.1 33 103-135 339-374 (445)
255 TIGR01744 XPRTase xanthine pho 40.7 1.1E+02 0.0023 21.7 5.4 49 101-149 114-172 (191)
256 COG4122 Predicted O-methyltran 40.2 95 0.0021 22.6 5.1 42 96-137 76-118 (219)
257 PRK07482 hypothetical protein; 40.2 70 0.0015 25.9 4.9 45 99-143 105-157 (461)
258 PRK07678 aminotransferase; Val 40.0 55 0.0012 26.4 4.3 38 106-143 106-151 (451)
259 PRK11522 putrescine--2-oxoglut 39.9 58 0.0012 26.4 4.4 43 101-143 137-184 (459)
260 KOG2882 p-Nitrophenyl phosphat 39.7 1.7E+02 0.0037 22.5 6.5 30 45-74 13-43 (306)
261 TIGR01090 apt adenine phosphor 39.7 63 0.0014 22.1 4.1 32 102-133 107-141 (169)
262 PRK08360 4-aminobutyrate amino 39.5 61 0.0013 26.0 4.5 47 97-143 93-141 (443)
263 TIGR03840 TMPT_Se_Te thiopurin 39.5 92 0.002 22.3 5.0 44 92-140 21-67 (213)
264 PRK08593 4-aminobutyrate amino 39.3 58 0.0013 26.2 4.4 38 106-143 104-143 (445)
265 PRK07322 adenine phosphoribosy 39.1 71 0.0015 22.2 4.3 31 103-133 119-152 (178)
266 KOG2805 tRNA (5-methylaminomet 38.9 57 0.0012 25.4 3.9 26 105-130 6-31 (377)
267 PRK06149 hypothetical protein; 38.8 58 0.0013 29.1 4.6 43 101-143 637-681 (972)
268 PRK07483 hypothetical protein; 38.8 78 0.0017 25.4 5.0 43 101-143 86-136 (443)
269 PRK06541 hypothetical protein; 38.6 68 0.0015 26.0 4.6 43 101-143 108-158 (460)
270 cd00006 PTS_IIA_man PTS_IIA, P 38.6 1.1E+02 0.0023 19.7 5.3 44 93-137 46-90 (122)
271 PRK15043 transcriptional regul 38.6 1.1E+02 0.0023 22.8 5.2 37 102-139 160-199 (243)
272 PRK09401 reverse gyrase; Revie 38.5 77 0.0017 29.1 5.3 43 94-139 320-365 (1176)
273 PF13738 Pyr_redox_3: Pyridine 38.5 49 0.0011 22.7 3.5 32 103-136 166-197 (203)
274 KOG0351 ATP-dependent DNA heli 38.4 47 0.001 29.6 3.9 41 99-140 480-520 (941)
275 cd01300 YtcJ_like YtcJ_like me 38.4 67 0.0015 25.8 4.6 33 98-130 106-138 (479)
276 TIGR02190 GlrX-dom Glutaredoxi 38.3 83 0.0018 18.3 4.1 28 103-130 6-34 (79)
277 TIGR01134 purF amidophosphorib 38.3 64 0.0014 26.1 4.4 35 103-137 337-374 (442)
278 PRK00129 upp uracil phosphorib 38.2 73 0.0016 22.8 4.3 31 104-134 124-157 (209)
279 TIGR01203 HGPRTase hypoxanthin 38.1 72 0.0016 21.9 4.1 32 103-134 83-117 (166)
280 PLN02369 ribose-phosphate pyro 38.0 67 0.0015 24.5 4.3 34 103-136 201-237 (302)
281 PRK06082 4-aminobutyrate amino 37.8 69 0.0015 25.9 4.6 43 101-143 126-170 (459)
282 cd03420 SirA_RHOD_Pry_redox Si 37.6 81 0.0018 18.0 5.1 37 94-130 16-52 (69)
283 PLN02541 uracil phosphoribosyl 37.6 81 0.0018 23.4 4.5 32 104-135 157-193 (244)
284 TIGR00824 EIIA-man PTS system, 37.6 1.1E+02 0.0024 19.6 4.9 42 94-137 48-91 (116)
285 TIGR01809 Shik-DH-AROM shikima 37.4 72 0.0016 23.9 4.4 32 104-136 125-156 (282)
286 PRK00919 GMP synthase subunit 37.4 93 0.002 23.9 5.0 38 100-139 18-58 (307)
287 PLN02440 amidophosphoribosyltr 37.4 57 0.0012 26.7 4.0 35 103-137 339-376 (479)
288 PRK14664 tRNA-specific 2-thiou 37.2 81 0.0018 24.8 4.7 27 104-130 5-31 (362)
289 TIGR01091 upp uracil phosphori 37.2 76 0.0016 22.6 4.3 31 104-134 122-155 (207)
290 PRK07030 adenosylmethionine--8 37.1 81 0.0018 25.6 4.9 43 101-143 103-153 (466)
291 PRK08264 short chain dehydroge 36.8 85 0.0018 22.1 4.6 33 104-136 6-38 (238)
292 COG3620 Predicted transcriptio 36.7 55 0.0012 22.9 3.2 31 108-138 75-105 (187)
293 KOG2585 Uncharacterized conser 36.7 56 0.0012 26.4 3.7 29 107-135 269-300 (453)
294 PRK00377 cbiT cobalt-precorrin 36.5 1.3E+02 0.0029 20.9 5.4 44 91-135 125-168 (198)
295 PF10903 DUF2691: Protein of u 36.5 66 0.0014 22.1 3.6 84 38-136 53-142 (153)
296 TIGR01043 ATP_syn_A_arch ATP s 36.3 86 0.0019 26.4 4.9 27 118-145 308-334 (578)
297 PRK01565 thiamine biosynthesis 36.3 75 0.0016 25.2 4.5 28 103-130 175-202 (394)
298 COG1155 NtpA Archaeal/vacuolar 36.3 34 0.00074 28.4 2.5 33 94-127 240-272 (588)
299 TIGR00709 dat 2,4-diaminobutyr 36.1 75 0.0016 25.5 4.5 39 105-143 102-142 (442)
300 cd05311 NAD_bind_2_malic_enz N 36.1 80 0.0017 22.9 4.3 33 104-137 25-59 (226)
301 PTZ00145 phosphoribosylpyropho 36.1 64 0.0014 26.2 4.0 33 103-135 334-369 (439)
302 PRK07036 hypothetical protein; 36.0 91 0.002 25.3 5.0 43 101-143 108-158 (466)
303 PRK06105 aminotransferase; Pro 35.7 95 0.0021 25.1 5.1 46 99-144 103-156 (460)
304 TIGR02189 GlrX-like_plant Glut 35.4 86 0.0019 19.4 3.9 27 104-130 7-34 (99)
305 PRK06827 phosphoribosylpyropho 35.3 74 0.0016 25.3 4.2 32 103-134 263-297 (382)
306 PRK02304 adenine phosphoribosy 35.1 91 0.002 21.5 4.3 31 102-132 112-145 (175)
307 PRK02227 hypothetical protein; 35.0 1.9E+02 0.0041 21.5 6.8 28 40-67 6-33 (238)
308 TIGR00342 thiazole biosynthesi 34.7 85 0.0018 24.6 4.5 28 103-130 171-198 (371)
309 PRK12900 secA preprotein trans 34.7 93 0.002 28.1 5.0 36 102-138 596-631 (1025)
310 PRK09219 xanthine phosphoribos 34.3 1.5E+02 0.0033 20.9 5.4 49 101-149 114-172 (189)
311 PRK13940 glutamyl-tRNA reducta 34.3 1.1E+02 0.0025 24.4 5.2 32 104-136 181-212 (414)
312 TIGR00700 GABAtrnsam 4-aminobu 34.2 94 0.002 24.6 4.8 37 106-142 95-133 (420)
313 PF13580 SIS_2: SIS domain; PD 34.0 1.4E+02 0.003 19.6 5.0 40 91-130 89-132 (138)
314 PRK05769 4-aminobutyrate amino 33.9 1E+02 0.0022 24.8 4.9 38 106-143 116-155 (441)
315 KOG0334 RNA helicase [RNA proc 33.7 56 0.0012 29.2 3.6 38 102-140 611-648 (997)
316 PRK07414 cob(I)yrinic acid a,c 33.7 1.2E+02 0.0025 21.4 4.6 37 102-138 19-61 (178)
317 cd01424 MGS_CPS_II Methylglyox 33.5 96 0.0021 19.4 4.0 20 116-136 14-33 (110)
318 PRK09427 bifunctional indole-3 33.5 2.1E+02 0.0045 23.4 6.6 88 42-132 143-235 (454)
319 PRK07847 amidophosphoribosyltr 33.5 82 0.0018 26.1 4.4 34 103-136 366-402 (510)
320 PRK07495 4-aminobutyrate amino 33.5 93 0.002 24.8 4.6 38 106-143 102-141 (425)
321 cd03028 GRX_PICOT_like Glutare 33.4 90 0.0019 18.8 3.7 27 104-130 7-39 (90)
322 TIGR02354 thiF_fam2 thiamine b 33.3 84 0.0018 22.3 4.0 31 108-138 24-54 (200)
323 cd00532 MGS-like MGS-like doma 33.1 1E+02 0.0022 19.5 4.0 10 121-130 35-44 (112)
324 KOG1403 Predicted alanine-glyo 32.7 1.5E+02 0.0032 23.2 5.2 40 99-139 97-138 (452)
325 KOG2836 Protein tyrosine phosp 32.7 1.5E+02 0.0033 20.0 4.8 46 85-130 72-125 (173)
326 PRK07480 putative aminotransfe 32.7 98 0.0021 25.0 4.7 47 97-143 103-157 (456)
327 TIGR02621 cas3_GSU0051 CRISPR- 32.7 58 0.0013 28.7 3.5 35 103-140 271-305 (844)
328 PRK07272 amidophosphoribosyltr 32.6 83 0.0018 25.8 4.3 34 103-136 349-385 (484)
329 PRK07046 aminotransferase; Val 32.4 40 0.00086 27.2 2.4 37 106-142 131-169 (453)
330 PRK02812 ribose-phosphate pyro 32.4 80 0.0017 24.5 4.0 34 103-136 229-265 (330)
331 PF12146 Hydrolase_4: Putative 32.4 1.1E+02 0.0024 18.0 4.3 31 105-136 16-50 (79)
332 KOG0924 mRNA splicing factor A 32.2 73 0.0016 27.7 3.9 38 94-131 361-399 (1042)
333 COG0373 HemA Glutamyl-tRNA red 32.0 1.4E+02 0.003 24.1 5.2 36 103-139 177-212 (414)
334 PRK11024 colicin uptake protei 32.0 1.4E+02 0.003 19.8 4.6 34 102-135 101-137 (141)
335 PRK08972 fliI flagellum-specif 31.9 2E+02 0.0044 23.4 6.2 28 117-145 240-267 (444)
336 PF08503 DapH_N: Tetrahydrodip 31.8 12 0.00026 22.8 -0.5 51 92-143 4-54 (83)
337 PRK06936 type III secretion sy 31.8 2.1E+02 0.0045 23.3 6.3 28 117-145 240-267 (439)
338 TIGR01465 cobM_cbiF precorrin- 31.6 1.9E+02 0.0042 20.6 8.6 104 38-149 10-122 (229)
339 PRK06943 adenosylmethionine--8 31.6 1E+02 0.0023 24.8 4.7 38 106-143 115-160 (453)
340 KOG1720 Protein tyrosine phosp 31.5 1.5E+02 0.0033 21.6 4.9 47 84-130 124-176 (225)
341 TIGR02356 adenyl_thiF thiazole 31.5 1E+02 0.0022 21.8 4.2 34 104-138 21-54 (202)
342 PRK00278 trpC indole-3-glycero 31.5 2.2E+02 0.0047 21.1 7.7 76 55-132 162-237 (260)
343 TIGR00365 monothiol glutaredox 31.5 1.1E+02 0.0024 18.8 3.9 27 104-130 11-43 (97)
344 PLN02297 ribose-phosphate pyro 31.4 88 0.0019 24.3 4.0 33 103-135 229-264 (326)
345 PLN02293 adenine phosphoribosy 31.4 1.2E+02 0.0026 21.4 4.4 33 101-133 122-157 (187)
346 PLN02347 GMP synthetase 31.3 1.6E+02 0.0034 24.6 5.6 45 94-139 219-266 (536)
347 PF00102 Y_phosphatase: Protei 31.1 73 0.0016 22.4 3.4 17 102-118 168-185 (235)
348 COG0134 TrpC Indole-3-glycerol 31.0 2.3E+02 0.005 21.2 7.6 75 55-131 158-232 (254)
349 PRK06777 4-aminobutyrate amino 31.0 1.1E+02 0.0024 24.3 4.7 38 106-143 102-141 (421)
350 cd03423 SirA SirA (also known 30.9 1.1E+02 0.0024 17.5 5.6 38 93-130 15-52 (69)
351 PRK05500 bifunctional orotidin 30.9 1.6E+02 0.0034 24.3 5.5 49 101-149 390-447 (477)
352 PRK09221 beta alanine--pyruvat 30.9 1.2E+02 0.0026 24.4 4.9 43 101-143 105-155 (445)
353 PRK09792 4-aminobutyrate trans 30.9 1.1E+02 0.0024 24.3 4.7 38 106-143 102-141 (421)
354 COG1077 MreB Actin-like ATPase 30.8 2.6E+02 0.0057 21.9 6.7 46 105-150 101-150 (342)
355 cd03029 GRX_hybridPRX5 Glutare 30.7 1.1E+02 0.0023 17.3 3.8 25 106-130 2-27 (72)
356 COG0169 AroE Shikimate 5-dehyd 30.4 92 0.002 23.6 3.9 32 106-137 127-158 (283)
357 PRK06173 adenosylmethionine--8 30.3 1.3E+02 0.0029 24.0 5.1 41 101-141 100-148 (429)
358 cd01544 PBP1_GalR Ligand-bindi 30.2 1.7E+02 0.0036 21.1 5.3 32 104-135 178-212 (270)
359 TIGR01251 ribP_PPkin ribose-ph 30.2 1E+02 0.0022 23.5 4.2 33 103-135 209-244 (308)
360 PF01118 Semialdhyde_dh: Semia 30.1 88 0.0019 19.9 3.4 36 103-139 65-100 (121)
361 COG0777 AccD Acetyl-CoA carbox 29.9 2E+02 0.0043 21.9 5.5 55 92-146 145-218 (294)
362 PF11181 YflT: Heat induced st 29.9 1.1E+02 0.0024 19.1 3.7 10 106-115 28-37 (103)
363 COG0160 GabT 4-aminobutyrate a 29.9 95 0.0021 25.3 4.1 52 93-144 104-158 (447)
364 TIGR03498 FliI_clade3 flagella 29.9 2.3E+02 0.005 22.8 6.2 30 116-146 217-246 (418)
365 PRK05653 fabG 3-ketoacyl-(acyl 29.9 1.2E+02 0.0026 21.3 4.4 24 106-129 7-30 (246)
366 PRK08927 fliI flagellum-specif 29.8 1.8E+02 0.0038 23.7 5.6 29 117-146 236-264 (442)
367 KOG1404 Alanine-glyoxylate ami 29.7 1.8E+02 0.0038 23.5 5.4 36 91-126 95-130 (442)
368 TIGR01367 pyrE_Therm orotate p 29.7 1.3E+02 0.0027 21.2 4.3 31 102-132 103-136 (187)
369 PRK08384 thiamine biosynthesis 29.5 1.1E+02 0.0025 24.2 4.5 27 104-130 180-206 (381)
370 cd00047 PTPc Protein tyrosine 29.5 70 0.0015 22.8 3.1 16 103-118 165-181 (231)
371 cd01132 F1_ATPase_alpha F1 ATP 29.4 2.5E+02 0.0055 21.2 6.3 28 117-145 149-176 (274)
372 cd06372 PBP1_GC_G_like Ligand- 29.4 1.7E+02 0.0037 22.6 5.4 40 91-130 183-222 (391)
373 PRK09123 amidophosphoribosyltr 29.3 1.1E+02 0.0023 25.2 4.3 33 103-135 359-394 (479)
374 PRK01269 tRNA s(4)U8 sulfurtra 29.0 1.1E+02 0.0024 24.9 4.4 30 103-133 176-205 (482)
375 TIGR01042 V-ATPase_V1_A V-type 28.9 1.3E+02 0.0027 25.5 4.7 28 117-145 313-340 (591)
376 KOG1503 Phosphoribosylpyrophos 28.9 2.1E+02 0.0046 21.4 5.4 53 69-126 136-188 (354)
377 TIGR02801 tolR TolR protein. T 28.9 1.7E+02 0.0036 18.9 5.8 34 102-135 91-127 (129)
378 PRK07168 bifunctional uroporph 28.8 3.3E+02 0.0071 22.4 10.6 111 37-150 13-132 (474)
379 PRK01259 ribose-phosphate pyro 28.8 1E+02 0.0022 23.6 4.0 33 103-135 207-242 (309)
380 TIGR01469 cobA_cysG_Cterm urop 28.8 2.2E+02 0.0048 20.3 9.2 109 38-149 11-128 (236)
381 PRK13354 tyrosyl-tRNA syntheta 28.6 62 0.0013 25.9 2.9 42 102-144 29-80 (410)
382 PRK13767 ATP-dependent helicas 28.5 1.1E+02 0.0025 27.0 4.7 40 101-140 281-325 (876)
383 PRK09496 trkA potassium transp 28.5 1.8E+02 0.0039 23.1 5.5 32 105-137 231-262 (453)
384 PRK12829 short chain dehydroge 28.5 1.3E+02 0.0027 21.6 4.4 33 103-136 10-42 (264)
385 smart00851 MGS MGS-like domain 28.5 1.1E+02 0.0024 18.3 3.5 10 121-130 23-32 (90)
386 PRK05576 cobalt-precorrin-2 C( 28.4 2.1E+02 0.0045 20.6 5.4 112 38-150 13-142 (229)
387 KOG1615 Phosphoserine phosphat 28.3 93 0.002 22.5 3.4 26 117-143 93-118 (227)
388 TIGR03251 LAT_fam L-lysine 6-t 28.3 1.4E+02 0.003 23.9 4.8 41 103-143 101-155 (431)
389 cd05191 NAD_bind_amino_acid_DH 28.2 1.4E+02 0.0029 17.7 4.6 32 104-136 23-54 (86)
390 COG1737 RpiR Transcriptional r 28.2 2E+02 0.0043 21.5 5.4 49 90-139 116-166 (281)
391 PRK09189 uroporphyrinogen-III 28.2 1.7E+02 0.0036 21.1 4.9 30 100-130 114-143 (240)
392 PRK08558 adenine phosphoribosy 28.1 1.4E+02 0.003 21.9 4.5 50 101-150 173-232 (238)
393 COG1611 Predicted Rossmann fol 28.1 1.1E+02 0.0025 21.9 3.9 11 104-114 14-24 (205)
394 PRK07402 precorrin-6B methylas 28.0 2E+02 0.0043 19.9 5.2 50 91-140 122-171 (196)
395 TIGR00642 mmCoA_mut_beta methy 28.0 1.5E+02 0.0033 25.2 5.1 45 102-147 544-595 (619)
396 KOG0029 Amine oxidase [Seconda 28.0 1.1E+02 0.0023 25.3 4.2 29 106-136 17-45 (501)
397 PRK09754 phenylpropionate diox 27.9 2.3E+02 0.0049 22.2 5.9 43 92-136 132-174 (396)
398 PRK05630 adenosylmethionine--8 27.9 1.3E+02 0.0028 24.0 4.6 42 101-142 96-145 (422)
399 PF14681 UPRTase: Uracil phosp 27.8 1.4E+02 0.003 21.3 4.3 31 104-134 121-156 (207)
400 PRK12828 short chain dehydroge 27.8 1.3E+02 0.0029 20.9 4.3 31 104-135 7-37 (239)
401 PRK06058 4-aminobutyrate amino 27.8 1.5E+02 0.0032 23.8 4.9 38 106-143 118-157 (443)
402 cd00291 SirA_YedF_YeeD SirA, Y 27.7 1.2E+02 0.0026 16.9 5.6 37 94-130 16-52 (69)
403 PRK05370 argininosuccinate syn 27.6 1.4E+02 0.0031 24.3 4.7 32 99-130 6-37 (447)
404 TIGR00268 conserved hypothetic 27.6 1.4E+02 0.0029 22.0 4.4 27 104-130 12-38 (252)
405 PRK15116 sulfur acceptor prote 27.6 1.2E+02 0.0025 22.9 4.0 34 104-138 30-63 (268)
406 PF00070 Pyr_redox: Pyridine n 27.5 1.3E+02 0.0029 17.3 4.0 16 113-128 7-22 (80)
407 PF04343 DUF488: Protein of un 27.3 59 0.0013 20.9 2.2 19 44-62 2-22 (122)
408 PF00733 Asn_synthase: Asparag 27.3 1.8E+02 0.0039 20.6 5.0 37 100-136 13-49 (255)
409 PRK12389 glutamate-1-semialdeh 27.2 1.1E+02 0.0024 24.4 4.1 38 106-143 110-149 (428)
410 PRK06931 diaminobutyrate--2-ox 27.2 1.4E+02 0.0031 24.1 4.7 38 106-143 122-161 (459)
411 PF13450 NAD_binding_8: NAD(P) 27.1 1.2E+02 0.0026 17.2 3.3 24 112-136 3-26 (68)
412 TIGR00508 bioA adenosylmethion 27.1 1.4E+02 0.003 23.8 4.7 43 101-143 101-151 (427)
413 PF01596 Methyltransf_3: O-met 27.1 1.8E+02 0.0039 20.8 4.8 41 99-139 65-106 (205)
414 PRK00258 aroE shikimate 5-dehy 27.1 1.5E+02 0.0031 22.1 4.5 34 104-138 123-156 (278)
415 PHA02742 protein tyrosine phos 27.0 1.2E+02 0.0026 23.0 4.1 15 104-118 229-244 (303)
416 TIGR01054 rgy reverse gyrase. 27.0 1.2E+02 0.0027 27.8 4.7 34 105-139 327-363 (1171)
417 PRK08328 hypothetical protein; 27.0 1.3E+02 0.0027 21.9 4.1 35 104-139 27-61 (231)
418 COG5350 Predicted protein tyro 26.8 87 0.0019 21.7 2.9 67 55-121 34-111 (172)
419 COG4667 Predicted esterase of 26.7 52 0.0011 24.9 2.0 30 40-69 173-202 (292)
420 PF00072 Response_reg: Respons 26.7 1.3E+02 0.0029 18.0 3.8 16 120-136 35-50 (112)
421 cd05014 SIS_Kpsf KpsF-like pro 26.6 1.7E+02 0.0037 18.4 4.4 34 101-135 45-80 (128)
422 COG1231 Monoamine oxidase [Ami 26.6 1.2E+02 0.0026 24.7 4.1 32 103-136 6-37 (450)
423 smart00194 PTPc Protein tyrosi 26.6 1E+02 0.0023 22.4 3.7 15 104-118 193-208 (258)
424 COG0106 HisA Phosphoribosylfor 26.5 2.4E+02 0.0052 21.0 5.4 80 44-133 34-126 (241)
425 KOG1401 Acetylornithine aminot 26.5 79 0.0017 25.4 3.0 37 104-140 115-159 (433)
426 KOG1712 Adenine phosphoribosyl 26.4 92 0.002 21.7 3.0 37 94-130 112-151 (183)
427 PRK06136 uroporphyrin-III C-me 26.3 2.5E+02 0.0055 20.2 8.8 109 38-149 14-131 (249)
428 cd03027 GRX_DEP Glutaredoxin ( 26.3 1.3E+02 0.0029 17.0 3.8 25 106-130 2-27 (73)
429 PRK11070 ssDNA exonuclease Rec 26.2 2.5E+02 0.0053 23.7 6.0 44 89-136 115-158 (575)
430 PLN02583 cinnamoyl-CoA reducta 26.1 1.5E+02 0.0033 22.0 4.5 31 104-135 6-36 (297)
431 COG1647 Esterase/lipase [Gener 26.1 1.3E+02 0.0028 22.3 3.8 33 117-149 72-108 (243)
432 PRK09280 F0F1 ATP synthase sub 26.0 3.3E+02 0.0071 22.4 6.5 28 117-145 225-253 (463)
433 KOG1716 Dual specificity phosp 26.0 1.7E+02 0.0038 21.9 4.8 28 102-129 153-183 (285)
434 cd01078 NAD_bind_H4MPT_DH NADP 25.9 1.7E+02 0.0037 20.2 4.5 32 104-136 28-59 (194)
435 PRK12549 shikimate 5-dehydroge 25.8 1.2E+02 0.0027 22.7 4.0 33 104-137 127-159 (284)
436 PRK11070 ssDNA exonuclease Rec 25.8 2E+02 0.0044 24.2 5.5 40 94-133 59-102 (575)
437 PF12471 GTP_CH_N: GTP cyclohy 25.8 67 0.0014 22.8 2.3 48 17-71 85-132 (194)
438 PRK13766 Hef nuclease; Provisi 25.7 1.8E+02 0.004 25.1 5.4 35 102-137 363-397 (773)
439 cd01133 F1-ATPase_beta F1 ATP 25.6 3E+02 0.0065 20.8 6.1 28 117-145 150-178 (274)
440 cd05212 NAD_bind_m-THF_DH_Cycl 25.6 1.9E+02 0.0042 19.3 4.5 33 103-136 27-59 (140)
441 PHA02558 uvsW UvsW helicase; P 25.5 1.1E+02 0.0023 25.1 3.8 39 103-142 343-381 (501)
442 TIGR02355 moeB molybdopterin s 25.4 1.4E+02 0.003 21.9 4.1 35 104-139 24-58 (240)
443 cd02072 Glm_B12_BD B12 binding 25.4 2.1E+02 0.0045 18.9 5.8 14 120-133 100-113 (128)
444 PRK12548 shikimate 5-dehydroge 25.4 1.5E+02 0.0032 22.3 4.3 32 104-136 126-157 (289)
445 cd01492 Aos1_SUMO Ubiquitin ac 25.2 1.4E+02 0.0031 21.0 4.0 38 104-142 21-58 (197)
446 PF02527 GidB: rRNA small subu 25.2 1.4E+02 0.003 21.0 3.9 39 103-141 71-109 (184)
447 cd06352 PBP1_NPR_GC_like Ligan 25.2 1.9E+02 0.0041 22.2 5.1 37 94-130 184-220 (389)
448 PF05430 Methyltransf_30: S-ad 25.2 43 0.00092 22.0 1.2 42 91-137 70-111 (124)
449 PRK10886 DnaA initiator-associ 25.1 2.6E+02 0.0055 19.9 5.9 42 95-137 101-144 (196)
450 cd00757 ThiF_MoeB_HesA_family 25.1 1.4E+02 0.0031 21.4 4.1 35 104-139 21-55 (228)
451 PRK05786 fabG 3-ketoacyl-(acyl 25.1 1.6E+02 0.0035 20.6 4.4 12 104-115 29-40 (238)
452 PRK04612 argD acetylornithine 25.1 1.3E+02 0.0028 23.9 4.1 38 106-143 99-145 (408)
453 PRK14968 putative methyltransf 25.1 2.2E+02 0.0048 19.1 5.3 39 93-131 130-168 (188)
454 TIGR01035 hemA glutamyl-tRNA r 25.1 2.2E+02 0.0049 22.7 5.5 34 104-138 180-213 (417)
455 TIGR03127 RuMP_HxlB 6-phospho 25.0 2.3E+02 0.005 19.3 5.2 46 91-137 17-64 (179)
456 COG1203 CRISPR-associated heli 25.0 1.3E+02 0.0028 26.0 4.3 41 98-139 434-474 (733)
457 cd06384 PBP1_NPR_B Ligand-bind 25.0 1.6E+02 0.0035 22.9 4.6 38 94-131 192-229 (399)
458 PRK14027 quinate/shikimate deh 24.9 2.7E+02 0.0059 21.0 5.6 32 104-136 127-158 (283)
459 COG1179 Dinucleotide-utilizing 24.9 1.2E+02 0.0026 22.8 3.5 32 104-136 30-61 (263)
460 COG2213 MtlA Phosphotransferas 24.9 1.4E+02 0.0031 23.9 4.1 37 105-141 379-420 (472)
461 PRK07231 fabG 3-ketoacyl-(acyl 24.9 1.6E+02 0.0034 20.8 4.3 24 106-129 7-30 (251)
462 PHA02740 protein tyrosine phos 24.9 1.9E+02 0.0041 22.0 4.8 14 104-117 221-235 (298)
463 PRK02277 orotate phosphoribosy 24.8 1.5E+02 0.0033 21.0 4.1 31 103-133 139-172 (200)
464 PRK14687 hypothetical protein; 24.8 1.2E+02 0.0027 21.2 3.4 41 90-130 6-50 (173)
465 PRK09492 treR trehalose repres 24.7 1.1E+02 0.0024 22.6 3.6 30 106-135 233-262 (315)
466 cd00755 YgdL_like Family of ac 24.6 1.5E+02 0.0032 21.7 4.0 33 105-138 12-44 (231)
467 PRK15083 PTS system mannitol-s 24.5 1.3E+02 0.0028 25.6 4.2 33 104-136 378-415 (639)
468 PRK04176 ribulose-1,5-biphosph 24.4 2.7E+02 0.0059 20.5 5.5 28 108-136 28-55 (257)
469 COG0488 Uup ATPase components 24.2 1.5E+02 0.0032 24.7 4.3 53 92-144 187-240 (530)
470 PRK05690 molybdopterin biosynt 24.2 1.5E+02 0.0033 21.7 4.1 35 104-139 32-66 (245)
471 PRK12939 short chain dehydroge 24.1 2.6E+02 0.0057 19.6 5.4 25 105-129 8-32 (250)
472 PF02629 CoA_binding: CoA bind 24.1 1.3E+02 0.0029 18.3 3.3 33 103-135 2-34 (96)
473 KOG1706 Argininosuccinate synt 24.1 1E+02 0.0022 24.0 3.1 40 105-144 6-47 (412)
474 PRK09548 PTS system ascorbate- 24.1 1.6E+02 0.0034 25.1 4.5 29 102-130 504-537 (602)
475 cd03421 SirA_like_N SirA_like_ 24.0 1.5E+02 0.0032 16.6 4.8 31 100-130 21-51 (67)
476 PF01135 PCMT: Protein-L-isoas 23.9 1.1E+02 0.0023 22.0 3.1 30 115-144 108-138 (209)
477 COG2121 Uncharacterized protei 23.8 2.2E+02 0.0049 20.6 4.6 40 102-141 65-106 (214)
478 TIGR03817 DECH_helic helicase/ 23.8 1E+02 0.0022 26.7 3.5 38 102-140 269-314 (742)
479 COG0647 NagD Predicted sugar p 23.7 1.8E+02 0.004 21.8 4.5 25 103-127 39-64 (269)
480 COG0461 PyrE Orotate phosphori 23.7 2.4E+02 0.0051 20.3 4.8 48 102-149 110-166 (201)
481 PRK12826 3-ketoacyl-(acyl-carr 23.7 1.6E+02 0.0035 20.7 4.2 8 106-113 32-39 (251)
482 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.6 1.7E+02 0.0037 19.0 4.0 36 100-136 58-96 (153)
483 cd01485 E1-1_like Ubiquitin ac 23.6 1.6E+02 0.0034 20.8 4.0 35 104-139 19-53 (198)
484 PLN02695 GDP-D-mannose-3',5'-e 23.5 1.7E+02 0.0037 22.7 4.5 34 102-136 19-52 (370)
485 cd02066 GRX_family Glutaredoxi 23.5 1.4E+02 0.0029 16.1 3.5 23 107-129 2-25 (72)
486 PRK07523 gluconate 5-dehydroge 23.4 1.8E+02 0.0039 20.7 4.4 31 104-135 10-40 (255)
487 PLN02238 hypoxanthine phosphor 23.4 1.7E+02 0.0036 20.6 4.0 31 103-133 96-129 (189)
488 PRK04196 V-type ATP synthase s 23.3 3.4E+02 0.0073 22.2 6.1 28 117-145 227-255 (460)
489 PRK07413 hypothetical protein; 23.3 1.9E+02 0.004 23.1 4.5 36 103-138 199-246 (382)
490 PRK05205 bifunctional pyrimidi 23.3 1.9E+02 0.004 19.9 4.2 31 103-133 94-128 (176)
491 PF01202 SKI: Shikimate kinase 23.2 2.2E+02 0.0047 19.0 4.5 37 104-142 61-98 (158)
492 PRK05579 bifunctional phosphop 23.2 3.9E+02 0.0085 21.3 7.2 25 113-138 213-237 (399)
493 PRK11267 biopolymer transport 23.2 2.3E+02 0.0051 18.7 6.2 35 102-136 97-134 (141)
494 PRK13255 thiopurine S-methyltr 23.1 2.7E+02 0.0058 20.0 5.1 30 104-138 39-68 (218)
495 PRK07878 molybdopterin biosynt 23.0 1.5E+02 0.0033 23.5 4.1 35 104-139 42-76 (392)
496 PF00975 Thioesterase: Thioest 23.0 2.4E+02 0.0052 19.6 4.9 35 103-137 64-102 (229)
497 TIGR01041 ATP_syn_B_arch ATP s 22.9 3.3E+02 0.0072 22.3 6.0 28 117-145 225-253 (458)
498 TIGR00580 mfd transcription-re 22.9 1.9E+02 0.0041 26.0 4.9 43 97-140 653-697 (926)
499 PRK12550 shikimate 5-dehydroge 22.8 1.5E+02 0.0033 22.2 3.9 35 102-137 120-154 (272)
500 PRK02106 choline dehydrogenase 22.7 1.4E+02 0.003 24.8 4.0 29 109-138 9-38 (560)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.96 E-value=8e-28 Score=161.61 Aligned_cols=113 Identities=45% Similarity=0.819 Sum_probs=96.4
Q ss_pred ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCc--eeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899 39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 116 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 116 (151)
...++++++.++++++..|||||++.||..|||||| +|+|+..+.....+.+.+++......++++++||+||++|.|
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R 93 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR 93 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence 457899999998887788999999999999999999 899985444344455555555554446788999999999999
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
|..++..|...||++|++|.||+.+|.++|+|+++
T Consensus 94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 99999999999999999999999999999999864
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-27 Score=152.95 Aligned_cols=114 Identities=41% Similarity=0.707 Sum_probs=105.1
Q ss_pred CCccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCC-CCeEEEEeCCC
Q 031899 37 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQSG 114 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iv~~c~~g 114 (151)
..+..++.++++++.+.+ .++||||.++||..||+|.+||||+......+.+.+++|.+......++ ++.|||+|.+|
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG 99 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG 99 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence 556789999999999987 9999999999999999999999999877788889999999998877765 56999999999
Q ss_pred hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899 115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150 (151)
Q Consensus 115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 150 (151)
.|+..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 999999999999999999999999999999998864
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.95 E-value=7.3e-27 Score=148.94 Aligned_cols=98 Identities=31% Similarity=0.491 Sum_probs=86.1
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 119 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~ 119 (151)
..++++++.++++++.+|||+|++.+|..||||||+|+|+.. +......++++++||+||++|.++..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~------------~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQ------------LESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhH------------hcccccCCCCCCcEEEEeCCCchHHH
Confidence 357899999888878899999999999999999999999842 22222336788999999999999999
Q ss_pred HHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899 120 AATDLLNAGFAGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 120 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv 149 (151)
++..|++.||+++++|+||+.+|..+|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999999999999999999999999985
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.94 E-value=1.8e-26 Score=149.69 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=84.0
Q ss_pred CCccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeC
Q 031899 37 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ 112 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~ 112 (151)
.....++++++.++++++ .+|||||++.||..||||||+|+|+ ..+......+ +++++||+||+
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~------------~~l~~~~~~l~~~~~~~ivv~C~ 74 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPG------------AELVLRVGELAPDPRTPIVVNCA 74 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCH------------HHHHHHHHhcCCCCCCeEEEECC
Confidence 344678999999888754 6899999999999999999999999 3444444444 45789999999
Q ss_pred CChhHHHHHHHHHHCCCCc-eeEccccHHHHHhCC
Q 031899 113 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG 146 (151)
Q Consensus 113 ~g~~a~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g 146 (151)
+|.||..++..|+..||+| ++.|+||+.+|..+|
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999988 999999999999876
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.94 E-value=2.4e-26 Score=148.82 Aligned_cols=101 Identities=32% Similarity=0.497 Sum_probs=90.1
Q ss_pred ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899 39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a 117 (151)
.+.++++++.++++. +.+|||+|++.||..||||||+|+|+ ..+......+++++++++||.+|.++
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s 71 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS 71 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence 467899999988754 58999999999999999999999998 44555556678899999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
..++..|+..||+|+++|+||+.+|..+++|++.
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred HHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 9999999999999999999999999999999863
No 6
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.94 E-value=9.1e-27 Score=173.78 Aligned_cols=146 Identities=20% Similarity=0.301 Sum_probs=113.8
Q ss_pred cccccCccccccccccccccCccccCcc--c-------ccC-CccccCHHHHHHHHhC-CCEEEecCChhhHh-------
Q 031899 6 DQQRCDNIGFISSKILSFCPKASLRGNL--E-------AVG-VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS------- 67 (151)
Q Consensus 6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~--~-------~~~-~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~------- 67 (151)
...++++|.+|+||+..|.......... . ... .....+.+++....+. ++.|||+|++.||.
T Consensus 109 ~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~ 188 (281)
T PRK11493 109 RTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPR 188 (281)
T ss_pred HHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCC
Confidence 4578999999999999998753211111 0 000 1123455555545444 48899999999995
Q ss_pred ----cCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 68 ----AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 68 ----~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
.||||||+|+|+..+..++.+.+.+.++..+.. ++++++||+||++|.+|+.++..|+.+||+|+++|+|||.+
T Consensus 189 ~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 189 PGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 699999999999877666667777888777654 57889999999999999999999999999999999999999
Q ss_pred HHh-CCCCCCC
Q 031899 142 WRQ-NGLPTEP 151 (151)
Q Consensus 142 W~~-~g~pv~~ 151 (151)
|.. +++|+++
T Consensus 269 W~~~~~~P~~~ 279 (281)
T PRK11493 269 WGARADLPVEP 279 (281)
T ss_pred HccCCCCCcCC
Confidence 998 7999974
No 7
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.94 E-value=3.5e-26 Score=173.27 Aligned_cols=147 Identities=12% Similarity=0.177 Sum_probs=115.8
Q ss_pred ccccccCccccccccccccccCccccCccc------------------------------cc-CCccccCHHHHHHHHhC
Q 031899 5 GDQQRCDNIGFISSKILSFCPKASLRGNLE------------------------------AV-GVPTSVPVRVAHELLQA 53 (151)
Q Consensus 5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~~~------------------------------~~-~~~~~i~~~~~~~~~~~ 53 (151)
....++++|++|+||+.+|........... .. .....++.+++.+.+..
T Consensus 124 L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 203 (320)
T PLN02723 124 FRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIED 203 (320)
T ss_pred HHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcC
Confidence 345789999999999999987543211100 00 01123577888777654
Q ss_pred -CCEEEecCChhhH-----------hcCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHH
Q 031899 54 -GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 118 (151)
Q Consensus 54 -~~~iiDvR~~~e~-----------~~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~ 118 (151)
+.+|||+|++.+| ..||||||+|+|+..+.. ++.+++.+.++..+.. ++++++||+||++|.+|+
T Consensus 204 ~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~ 283 (320)
T PLN02723 204 KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTAC 283 (320)
T ss_pred CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHH
Confidence 4789999999988 469999999999976553 4678888888887764 678999999999999999
Q ss_pred HHHHHHHHCCCCceeEccccHHHHHhC-CCCCCC
Q 031899 119 MAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP 151 (151)
Q Consensus 119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~pv~~ 151 (151)
.++..|+.+||++|++|+|||.+|... .+|+++
T Consensus 284 ~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 284 ILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred HHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 999999999999999999999999885 688863
No 8
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.94 E-value=2.5e-26 Score=147.01 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=79.1
Q ss_pred ccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899 41 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 119 (151)
Q Consensus 41 ~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~ 119 (151)
.++++++.+++++ +++|||||++.||..||||||+|+|+..+.. ..+.+... ..++++++||+||++|.||..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~-----~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE-----FPFWLDEN-LDLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH-----hHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence 5788999888765 4789999999999999999999999853210 00111111 123788999999999999999
Q ss_pred HHHHHHHCCCCceeEccccHHHHHh
Q 031899 120 AATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 120 ~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
++..|+..||++|++|+||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999999999999999963
No 9
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=166.04 Aligned_cols=144 Identities=23% Similarity=0.375 Sum_probs=115.3
Q ss_pred cccCccccccccccccccCccccCc--cc--cc------CCccccCHHHHHHHHhCC-CEEEecCChhhHhc--------
Q 031899 8 QRCDNIGFISSKILSFCPKASLRGN--LE--AV------GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA-------- 68 (151)
Q Consensus 8 ~~~~~v~~l~gg~~~w~~~~~~~~~--~~--~~------~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~-------- 68 (151)
.+.++|++|+||+++|.++.-.... .. .. ......+..+.....+.. .+|||+|++.+|..
T Consensus 114 ~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~ 193 (285)
T COG2897 114 LGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDG 193 (285)
T ss_pred cCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCC
Confidence 6789999999999999986542221 11 00 112345666666666554 77899999999998
Q ss_pred --CCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 69 --GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 69 --ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
||||||+|+|+..+.. ...++.++.++.+... ++++++||+||++|.+|+..+..|+.+|+.+.++|+|+|.+|.
T Consensus 194 ~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg 273 (285)
T COG2897 194 KAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWG 273 (285)
T ss_pred CCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhh
Confidence 9999999999988776 4567777778877744 7899999999999999999999999999988899999999999
Q ss_pred hC-CCCCCC
Q 031899 144 QN-GLPTEP 151 (151)
Q Consensus 144 ~~-g~pv~~ 151 (151)
+. +.||++
T Consensus 274 ~~~~~PV~~ 282 (285)
T COG2897 274 SDPDRPVET 282 (285)
T ss_pred cCCCCcccc
Confidence 85 668864
No 10
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.93 E-value=4.5e-25 Score=138.42 Aligned_cols=89 Identities=35% Similarity=0.606 Sum_probs=79.7
Q ss_pred cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHH
Q 031899 42 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 121 (151)
Q Consensus 42 i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~ 121 (151)
++++++.++++++.++||+|++.+|..||||||+|+|. ..+......+++++++|+||++|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 46888988887778999999999999999999999998 345555556788899999999999999999
Q ss_pred HHHHHCCCCceeEccccHHHHH
Q 031899 122 TDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 122 ~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
..|+..|| ++++|+||+.+|+
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 99999999 9999999999996
No 11
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.93 E-value=6.4e-25 Score=142.60 Aligned_cols=99 Identities=26% Similarity=0.490 Sum_probs=84.9
Q ss_pred CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHH-HHHhccCCCCeEEEEeCC
Q 031899 38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQS 113 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv~~c~~ 113 (151)
....++++++.++++.+ ++|||+|++.+|..||||||+|+|.. .+. .....++++++||+||++
T Consensus 6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~ 73 (110)
T cd01521 6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDG 73 (110)
T ss_pred eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECC
Confidence 34578999999888653 78999999999999999999999984 232 344567889999999998
Q ss_pred C--hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899 114 G--KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 114 g--~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv 149 (151)
| .++..+++.|++.|| ++++|+||+.+|..+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCC-eEEEecCCHHHHHHCCCCC
Confidence 7 489999999999999 4999999999999999985
No 12
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.92 E-value=4.1e-25 Score=141.12 Aligned_cols=97 Identities=26% Similarity=0.377 Sum_probs=78.9
Q ss_pred cCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899 42 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 119 (151)
Q Consensus 42 i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~ 119 (151)
++++++.++++++ ++|||||++.||..||||||+|+|+..+.... ..........++++++||+||.+|.+|..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~----~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF----LEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH----HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 5788888887653 78999999999999999999999985321100 00013345567889999999999999999
Q ss_pred HHHHHHHCCCCceeEccccHHHHH
Q 031899 120 AATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 120 ~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
++..|++.||+ ++.|.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999998 999999999996
No 13
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.92 E-value=8e-25 Score=145.77 Aligned_cols=102 Identities=28% Similarity=0.485 Sum_probs=79.7
Q ss_pred cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCC----CCC------------------CHHHHHHHH-
Q 031899 42 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MTK------------------NLKFVEEVS- 98 (151)
Q Consensus 42 i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~----~~~------------------~~~~~~~~~- 98 (151)
|+++++.++++++.+|||||++.||..||||||+|+|+....... .++ .+.++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578899988887789999999999999999999999995322100 000 011122221
Q ss_pred hccCCCCeEEEEeC-CChhHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 99 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 99 ~~~~~~~~iv~~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
..++++++||+||+ +|.||..+++.|+.+|| ++++|+||+.+|..
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 25788999999997 68999999999999999 69999999999975
No 14
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.92 E-value=8.4e-25 Score=177.07 Aligned_cols=146 Identities=19% Similarity=0.294 Sum_probs=115.9
Q ss_pred cccccCccccccccccccccCccc--cCcccc--------cCCccccCHHHHHHHHhC-CCEEEecCChhhHh-------
Q 031899 6 DQQRCDNIGFISSKILSFCPKASL--RGNLEA--------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS------- 67 (151)
Q Consensus 6 ~~~~~~~v~~l~gg~~~w~~~~~~--~~~~~~--------~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~------- 67 (151)
...++++|++|+||+.+|..+... .+.... ......++.+++.+.+++ +++|||+|++.||.
T Consensus 103 ~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~ 182 (610)
T PRK09629 103 DVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAA 182 (610)
T ss_pred HHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccc
Confidence 447899999999999999885432 111110 011235688888877754 47899999999994
Q ss_pred -cCCCCCceeecccccc-CCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 68 -AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 68 -~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
.||||||+|+|+..+. ..+.+++++.+++++.. ++++++||+||++|.+|+.+++.|+.+||++|++|+|||.+|.
T Consensus 183 r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~ 262 (610)
T PRK09629 183 KGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWG 262 (610)
T ss_pred cCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHh
Confidence 7999999999986544 34567778888887765 5789999999999999999999999999999999999999998
Q ss_pred hC-CCCCCC
Q 031899 144 QN-GLPTEP 151 (151)
Q Consensus 144 ~~-g~pv~~ 151 (151)
.. ++|+++
T Consensus 263 ~~~~lPv~~ 271 (610)
T PRK09629 263 NHPDTPVEV 271 (610)
T ss_pred CCCCCcccc
Confidence 85 788863
No 15
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.92 E-value=7e-25 Score=141.25 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=81.1
Q ss_pred CHHHHHHHHh-C-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHH
Q 031899 43 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 118 (151)
Q Consensus 43 ~~~~~~~~~~-~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~ 118 (151)
+++++.++++ . +.+|||+|++.+|..||||||+|+|+..+... ....++.+...+.. ++++++||+||++|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 5677777776 4 48999999999999999999999999654322 22233334444443 356889999999999999
Q ss_pred HHHHHHHHCCCCceeEccccHHHHHh
Q 031899 119 MAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 119 ~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
.+++.|+..||+||++|+||+.+|.+
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999963
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.92 E-value=1.3e-24 Score=143.67 Aligned_cols=108 Identities=30% Similarity=0.406 Sum_probs=85.3
Q ss_pred CCccccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHH---HHhccCCCCeEEEEe
Q 031899 37 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGC 111 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~--~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iv~~c 111 (151)
.....++++++.+++++ +++|||+|++.||..||||||+|+|+..+.... ..+.. ....++++++||+||
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~-----~~~~~~~~~~~~~~~~~~ivv~C 79 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKA-----AELKSLQELPLDNDKDSPIYVVC 79 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhh-----hhhhhhhhcccccCCCCcEEEEC
Confidence 44567899999988865 478999999999999999999999985332100 00000 012247789999999
Q ss_pred CCChhHHHHHHHHHHCCC-CceeEccccHHHHHhCCCCC
Q 031899 112 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 112 ~~g~~a~~~~~~L~~~G~-~~v~~l~GG~~~W~~~g~pv 149 (151)
++|.+|..++..|+..|| ++++.|+||+.+|.....+.
T Consensus 80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 999999999999999999 79999999999999875543
No 17
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.92 E-value=1.4e-24 Score=137.45 Aligned_cols=90 Identities=27% Similarity=0.350 Sum_probs=74.3
Q ss_pred cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc-c-CCCCeEEEEeCCChh
Q 031899 42 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-F-RKHDEIIVGCQSGKR 116 (151)
Q Consensus 42 i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~iv~~c~~g~~ 116 (151)
|+++++.+++.++ ++|||||++.||..||||||+|+|+. .+...... . .++++||+||.+|.|
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~------------~l~~~~~~~~~~~~~~iv~~c~~G~r 68 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG------------QLVQETDHFAPVRGARIVLADDDGVR 68 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH------------HHHHHHHHhcccCCCeEEEECCCCCh
Confidence 5778888887653 67999999999999999999999984 22221122 2 247899999999999
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
+..++..|+..||+ +++|+||+.+|..
T Consensus 69 s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 69 ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 99999999999998 9999999999963
No 18
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.92 E-value=2.5e-24 Score=137.70 Aligned_cols=91 Identities=32% Similarity=0.545 Sum_probs=77.9
Q ss_pred cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc---CCCCeEEEEeCCCh
Q 031899 42 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK 115 (151)
Q Consensus 42 i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~~c~~g~ 115 (151)
++++++.++++.+ .+|||+|++.||..+|||||+|+|+. .+......+ ++++++|+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 6788888887754 78999999999999999999999984 233333333 35899999999999
Q ss_pred hHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 116 RSMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
+|..++..|.+.||+++++|+||+.+|..
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 99999999999999999999999999975
No 19
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.92 E-value=2.7e-24 Score=136.14 Aligned_cols=91 Identities=34% Similarity=0.596 Sum_probs=81.1
Q ss_pred cCHHHHHHHHhC--CCEEEecCChhhHhc--CCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899 42 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 42 i~~~~~~~~~~~--~~~iiDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a 117 (151)
++++++.++++. +++|||+|++.+|.. ||||||+|+|+ ..+......++++++||+||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence 678888888765 389999999999999 99999999999 34555556688899999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
..++..|+..||+++++|+||+.+|..
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 999999999999999999999999963
No 20
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.92 E-value=2.5e-24 Score=146.09 Aligned_cols=91 Identities=25% Similarity=0.381 Sum_probs=80.9
Q ss_pred HHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHH
Q 031899 48 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 125 (151)
Q Consensus 48 ~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~ 125 (151)
.+++.++ ++|||||++.+|..||||||+|+|. ..+......++++++||+||.+|.+|..+++.|+
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~ 70 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA 70 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence 4444433 7999999999999999999999998 5666666677888999999999999999999999
Q ss_pred HCCCCceeEccccHHHHHhCCCCCC
Q 031899 126 NAGFAGITDIAGGFAAWRQNGLPTE 150 (151)
Q Consensus 126 ~~G~~~v~~l~GG~~~W~~~g~pv~ 150 (151)
..||++|++|+||+.+|..+|+|++
T Consensus 71 ~~G~~~v~~L~GG~~aW~~~g~pl~ 95 (145)
T cd01535 71 ALTVKPVFVLEGGTAAWIAAGLPVE 95 (145)
T ss_pred HcCCcCeEEecCcHHHHHHCCCCcc
Confidence 9999999999999999999999986
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.92 E-value=4.5e-24 Score=140.87 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=89.3
Q ss_pred cCHHHHHHHHhC-CCEEEecCCh-------hhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cCCCCe
Q 031899 42 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 106 (151)
Q Consensus 42 i~~~~~~~~~~~-~~~iiDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~ 106 (151)
++++++.+++.+ +.+|||+|++ .+|..||||||+|+|+..+.. .+.+.+.+.+.+.... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 688899888876 5889999999 999999999999999876543 3456666666666654 578999
Q ss_pred EEEEeCC-ChhHHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899 107 IIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 146 (151)
Q Consensus 107 iv~~c~~-g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 146 (151)
||+||++ +.++..+++.|+..||++|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999999 589999999999999999999999999998875
No 22
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.91 E-value=2.8e-24 Score=137.64 Aligned_cols=101 Identities=28% Similarity=0.436 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhC-CCEEEecCChhhH-hcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899 42 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 119 (151)
Q Consensus 42 i~~~~~~~~~~~-~~~iiDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~ 119 (151)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+... ...... .....++++++||+||++|.++..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~--~~~~~~--~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFW--ADPDSP--YHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhh--cCcccc--ccccCCCCCCeEEEEcCCCCcHHH
Confidence 477888888764 5889999999998 5799999999998422100 000000 001136789999999999999999
Q ss_pred HHHHHHHCCCCceeEccccHHHHHhCC
Q 031899 120 AATDLLNAGFAGITDIAGGFAAWRQNG 146 (151)
Q Consensus 120 ~~~~L~~~G~~~v~~l~GG~~~W~~~g 146 (151)
+++.|+..||+++++|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999999999999999999998765
No 23
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.91 E-value=6.7e-24 Score=146.39 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=83.9
Q ss_pred CccccCHHHHHHHHhCC-CEEEecCChh----hHhcC---------CCCCceeeccccccCCCCCCCHHHHHHHHhc---
Q 031899 38 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTKNLKFVEEVSTR--- 100 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--- 100 (151)
....++++++.++++++ .+|||||++. +|..| |||||+|+|+..... ........+...+..
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l~~~~~~~~~~~l~~~~~ 112 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-LAPAWQAYFRRGLERATG 112 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-CCCchhHHHHHHHHHhcC
Confidence 34689999999988764 8899999865 45544 999999999631110 000111223333322
Q ss_pred cCCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899 101 FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv 149 (151)
.+++++||+||++|. +|..+++.|+.+||++|++|+||+.+|..+|+|+
T Consensus 113 ~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 113 GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 268899999999985 8999999999999999999999999999999996
No 24
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.91 E-value=6.3e-24 Score=139.30 Aligned_cols=103 Identities=24% Similarity=0.452 Sum_probs=86.6
Q ss_pred cCHHHHHHHHhCC-CEEEecCChhhHhc-----------CCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCe
Q 031899 42 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE 106 (151)
Q Consensus 42 i~~~~~~~~~~~~-~~iiDvR~~~e~~~-----------ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 106 (151)
++++++.++++++ ++|||+|++.||.. ||||||+|+|+..+.. .+.+++.+.+...+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 4678888887654 89999999999987 9999999999976543 2345566677776665 457899
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
||+||++|.+|.++++.|+.+||+++++|+||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999963
No 25
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.91 E-value=5.2e-24 Score=136.99 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=77.1
Q ss_pred cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCC-CCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899 42 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 42 i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a 117 (151)
|+++++.+++++ +++|||+|++.||..||||||+|+|+..+... .....-.....+.. ..+++||+||.+|.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s 78 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA 78 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence 578899988875 47899999999999999999999998644321 11100000111111 2478999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHH
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
..+++.|+..||++|++|+||+.+|+
T Consensus 79 ~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 79 ALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 99999999999999999999999995
No 26
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.91 E-value=6.5e-24 Score=139.30 Aligned_cols=102 Identities=28% Similarity=0.428 Sum_probs=83.9
Q ss_pred cCHHHHHHHHhC--CCEEEecCChhhHh-cCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHH
Q 031899 42 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 118 (151)
Q Consensus 42 i~~~~~~~~~~~--~~~iiDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~ 118 (151)
++++++.+++++ +.+|||||++.||. .||||||+|+|+..+... .....+...+...++++++||+||++|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 578888888876 48899999999999 999999999998654321 1123344444444578899999999999999
Q ss_pred HHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 119 MAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
.++..|+..||++++.+.||+.+|+..
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 999999999999999999999999764
No 27
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.90 E-value=1.4e-23 Score=138.38 Aligned_cols=92 Identities=28% Similarity=0.402 Sum_probs=77.5
Q ss_pred ccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh------ccCCCCeE
Q 031899 41 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI 107 (151)
Q Consensus 41 ~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i 107 (151)
.|+++++.+++.+ +++|||||++.||..||||||+|+|.. +.+..... .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 5789999888764 478999999999999999999999983 12333222 25789999
Q ss_pred EEEeC-CChhHHHHHHHHHHC------------CCCceeEccccHHHHH
Q 031899 108 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR 143 (151)
Q Consensus 108 v~~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~GG~~~W~ 143 (151)
|+||. +|.||..+++.|+.. ||.+|++|+||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 999999999999985 9999999999999984
No 28
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.90 E-value=2.8e-23 Score=131.35 Aligned_cols=96 Identities=33% Similarity=0.551 Sum_probs=76.3
Q ss_pred CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHH--hccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
++++|||+|++.||..+|||||+|+|...+...........+.... ...+++++||+||.+|.++..+++.|+..||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999996544322111111222222 23567899999999999999999999999999
Q ss_pred ceeEccccHHHHHhCCCC
Q 031899 131 GITDIAGGFAAWRQNGLP 148 (151)
Q Consensus 131 ~v~~l~GG~~~W~~~g~p 148 (151)
++++|+||+.+|..++.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999998865
No 29
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.90 E-value=4.7e-23 Score=133.55 Aligned_cols=103 Identities=31% Similarity=0.540 Sum_probs=79.2
Q ss_pred CHHHHHHHH-hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHH----HHHHHhccCCCCeEEEEeCCChhH
Q 031899 43 PVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 43 ~~~~~~~~~-~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~~~~~~~iv~~c~~g~~a 117 (151)
|++++.+++ +++++|||+|++.+|..||||||+|+|+............+. .......++++++||+||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 578898888 345999999999999999999999999965522222222222 233333467888999999888777
Q ss_pred HHHHHH-----HHHCCCCceeEccccHHHHHhC
Q 031899 118 MMAATD-----LLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 118 ~~~~~~-----L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
..++.. |...||++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 766665 8899999999999999999863
No 30
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.90 E-value=3.4e-23 Score=131.27 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=71.3
Q ss_pred hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899 52 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 131 (151)
Q Consensus 52 ~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~ 131 (151)
+++++|||+|++.+|..||||||+|+|+..+. .....++. ....+++++||+||++|.++..++..|+..||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~-----~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALV-----LRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhc-----CCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence 34589999999999999999999999985321 12233332 3345778999999999999999999999999999
Q ss_pred eeEccccHHHHHh
Q 031899 132 ITDIAGGFAAWRQ 144 (151)
Q Consensus 132 v~~l~GG~~~W~~ 144 (151)
|++|+||+.+|.+
T Consensus 84 v~~l~GG~~~W~~ 96 (96)
T cd01529 84 VALLDGGTSAWVA 96 (96)
T ss_pred EEEeCCCHHHhcC
Confidence 9999999999963
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.89 E-value=6.3e-23 Score=158.66 Aligned_cols=99 Identities=34% Similarity=0.591 Sum_probs=88.2
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhH
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a 117 (151)
..++++++.++++++.+|||+|++.||..||||||+|+|+. .+...... .+++++||+||++|.+|
T Consensus 3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 46899999999888899999999999999999999999983 44443333 26789999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 150 (151)
..+++.|+..||++|++|+||+.+|..+|+|++
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 103 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE 103 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence 999999999999999999999999999999986
No 32
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.89 E-value=1.6e-22 Score=136.19 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=84.1
Q ss_pred cCHHHHHHHHh-----CCCEEEecCCh--------hhHhc------------CCCCCceeeccccccC-C----CCCCCH
Q 031899 42 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL 91 (151)
Q Consensus 42 i~~~~~~~~~~-----~~~~iiDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-~----~~~~~~ 91 (151)
++++++.+.++ ++++|||+|+. .+|.. ||||||+|+|+..+.. + ..+++.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46788888876 35899999987 88998 9999999999865432 1 234455
Q ss_pred HHHHHHHhc--cCCCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 92 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 92 ~~~~~~~~~--~~~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
+.+...+.. ++++++||+||++ +..+.++++.|+.+|+++|++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 677777765 5788999999986 688999999999999999999999999996
No 33
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.89 E-value=2e-22 Score=150.47 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=93.1
Q ss_pred cccCHHHHHHHHhCC-CEEEecCC----------hhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc--c
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 101 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~----------~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--~ 101 (151)
..++++++.+.++++ ++|||+|+ +.+|..||||||+|+|+..+... ..+.+++.+...+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 468999998888654 89999996 78999999999999998654321 344566777777776 4
Q ss_pred CCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 102 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 102 ~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
+++++||+||.++. .+.++++.|+..||++|++|+||+.+|.++|+|+++
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 78999999999875 477889999999999999999999999999999863
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.88 E-value=1.6e-22 Score=127.32 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=66.9
Q ss_pred CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHH-HHHhccC-CCCeEEEEeCCChh--HHHHHHHHHHCC
Q 031899 53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAG 128 (151)
Q Consensus 53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~iv~~c~~g~~--a~~~~~~L~~~G 128 (151)
++++|||+|++.||..+|||||+|+|.. .+. .....++ ++++||+||.+|.+ |..+++.|++.|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 4589999999999999999999999984 222 1222233 58899999999876 689999999999
Q ss_pred CCceeEccccHHHHHh
Q 031899 129 FAGITDIAGGFAAWRQ 144 (151)
Q Consensus 129 ~~~v~~l~GG~~~W~~ 144 (151)
|++|++|+||+.+|.+
T Consensus 77 ~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTDVALLEGGLQGWRA 92 (92)
T ss_pred ccCEEEccCCHHHHcC
Confidence 9999999999999974
No 35
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.88 E-value=3.2e-22 Score=151.66 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=93.1
Q ss_pred ccccCHHHHHHHHhC-CCEEEecC--------C-hhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhcc--
Q 031899 39 PTSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTRF-- 101 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~-~~~iiDvR--------~-~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~~-- 101 (151)
...++++++.+++++ +++|||+| + ..+|..||||||+|+++..+.. ...++..+.+...+..+
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi 100 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI 100 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence 358999999998865 48899996 3 3789999999999999865442 13455667777777764
Q ss_pred CCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 102 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 102 ~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
.++++||+||+.|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus 101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 57899999998874 567889999999999999999999999999999863
No 36
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.88 E-value=4.4e-22 Score=161.36 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=95.2
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeecccccc-----CCCCCCCHHHHHHHHhcc--CCCCeEEEEe
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTRF--RKHDEIIVGC 111 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~iv~~c 111 (151)
..|+++++.++++++ ++|||+|++.+|..||||||+|+++.... ..+++++.+.++..+..+ +++++||+||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 568999999998764 89999999999999999999999975432 134566667777777764 6799999999
Q ss_pred CCC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899 112 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150 (151)
Q Consensus 112 ~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 150 (151)
+++ .++.++++.|+.+||++|++|+||+.+|..+|+|++
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~ 128 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS 128 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence 977 588899999999999999999999999999999986
No 37
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.1e-21 Score=126.74 Aligned_cols=87 Identities=40% Similarity=0.690 Sum_probs=76.1
Q ss_pred CCCEEEecCChhhHhcCCCCC-ceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899 53 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 53 ~~~~iiDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
.+.+|||||++.||..+|||| ++|+|..+ +...... +++++++|+||.+|.||..++..|+..||
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 459999999999999999999 99999953 2222222 47899999999999999999999999999
Q ss_pred CceeEccccHHHHHhCCCCCCC
Q 031899 130 AGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 130 ~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
++++.+.||+.+|..+++|+++
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred ccccccCCcHHHHHhcCCCccc
Confidence 9888999999999999998763
No 38
>PRK01415 hypothetical protein; Validated
Probab=99.87 E-value=1.2e-21 Score=142.48 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=82.7
Q ss_pred ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHH---HhccCCCCeEEEEeCCC
Q 031899 39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV---STRFRKHDEIIVGCQSG 114 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iv~~c~~g 114 (151)
-..++++++.+++++ +++|||||++.||..||||||+|+|...+ ..+... ...++++++|++||.+|
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f---------~e~~~~~~~~~~~~k~k~Iv~yCtgG 181 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTF---------KQFPAWVQQNQELLKGKKIAMVCTGG 181 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHH---------hhhHHHHhhhhhhcCCCeEEEECCCC
Confidence 357999999998875 48999999999999999999999998421 111111 23357899999999999
Q ss_pred hhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
.||..++..|++.||++|+.|.||+.+|.+.
T Consensus 182 iRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 182 IRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred hHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 9999999999999999999999999999875
No 39
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.87 E-value=8.1e-22 Score=122.55 Aligned_cols=80 Identities=43% Similarity=0.678 Sum_probs=69.9
Q ss_pred hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHH--HhccCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899 52 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 52 ~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
.++..|||+|++.+|..+|||||+|+|+. .+... ....+++++||+||+++.++..+++.|++.||
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~------------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLS------------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG 75 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchH------------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence 45689999999999999999999999994 22222 34567899999999999999999999999999
Q ss_pred CceeEccccHHHHH
Q 031899 130 AGITDIAGGFAAWR 143 (151)
Q Consensus 130 ~~v~~l~GG~~~W~ 143 (151)
+++++|+||+.+|.
T Consensus 76 ~~v~~l~gG~~~w~ 89 (89)
T cd00158 76 TNVYNLEGGMLAWK 89 (89)
T ss_pred ccEEEecCChhhcC
Confidence 99999999999994
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.87 E-value=1.9e-21 Score=124.22 Aligned_cols=80 Identities=31% Similarity=0.554 Sum_probs=68.1
Q ss_pred CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
....+||+|++.||..||||||+|+|+. .+......+ +++++||+||++|.+|..++..|++.||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3467999999999999999999999993 344444432 46789999999999999999999999999
Q ss_pred ceeEccccHHHHHhC
Q 031899 131 GITDIAGGFAAWRQN 145 (151)
Q Consensus 131 ~v~~l~GG~~~W~~~ 145 (151)
+++++ ||+.+|..-
T Consensus 85 ~v~~~-GG~~~~~~~ 98 (101)
T TIGR02981 85 HAENA-GGIKDIAMP 98 (101)
T ss_pred eEEec-CCHHHhhhh
Confidence 99985 999999753
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.86 E-value=1.6e-21 Score=127.10 Aligned_cols=97 Identities=22% Similarity=0.411 Sum_probs=75.1
Q ss_pred cccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeC-C
Q 031899 40 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ-S 113 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~-~ 113 (151)
..++++++.+++..+ .+|||||++ ||..||||||+|+|+..+. ..+..+.... +++++||+||. +
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 467899999887653 689999999 9999999999999995221 1122222222 56789999998 6
Q ss_pred ChhHHHHHHHHHH--------CCCCceeEccccHHHHHhC
Q 031899 114 GKRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 114 g~~a~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~ 145 (151)
+.|+..++..|.+ .||.+|++|+||+.+|.+.
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 6788888877643 4999999999999999864
No 42
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.86 E-value=2.5e-21 Score=124.21 Aligned_cols=78 Identities=31% Similarity=0.532 Sum_probs=67.0
Q ss_pred CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899 54 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG 131 (151)
Q Consensus 54 ~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~ 131 (151)
+-+|||+|++.||..+|||||+|+|+. .+......+ +++++||+||++|.+|..++..|.+.||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 357999999999999999999999983 344444443 456889999999999999999999999999
Q ss_pred eeEccccHHHHHh
Q 031899 132 ITDIAGGFAAWRQ 144 (151)
Q Consensus 132 v~~l~GG~~~W~~ 144 (151)
+++ .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 987 699999975
No 43
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.86 E-value=4.3e-21 Score=141.13 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=81.5
Q ss_pred CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEE
Q 031899 38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG 110 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 110 (151)
....++++++.++++. +.+|||||++.||..||||||+|+|+..+.. .+..+......+ ++++|++|
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-----~~~~l~~~~~~~-kdk~Ivvy 181 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-----FPEALAAHRADL-AGKTVVSF 181 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-----hHHHHHhhhhhc-CCCeEEEE
Confidence 3467899999888764 2789999999999999999999999942210 011122222223 68999999
Q ss_pred eCCChhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 111 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 111 c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
|.+|.|+..++..|++.||++|+.|.||+.+|.+.
T Consensus 182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 99999999999999999999999999999999874
No 44
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.85 E-value=7.1e-21 Score=147.82 Aligned_cols=100 Identities=29% Similarity=0.491 Sum_probs=85.3
Q ss_pred ccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899 39 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 116 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 116 (151)
...++++++.++++.+ ++|||+|++.||..+|||||+|+|+..+.. ......++++++||+||++|.+
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~----------~~~~~~l~~d~~iVvyC~~G~r 355 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILS----------GEALAKLPQDRTIVLYCKTGVR 355 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcc----------hhHHhhCCCCCcEEEEcCCChH
Confidence 4578999999988754 689999999999999999999999952210 1234457889999999999999
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 148 (151)
|..+++.|++.||++|++|+||+.+|..+..|
T Consensus 356 S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 356 SAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred HHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 99999999999999999999999999987654
No 45
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.84 E-value=2.3e-20 Score=140.87 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=81.5
Q ss_pred ccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--ccCCCCeEEEEeCCCh
Q 031899 39 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGK 115 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~ 115 (151)
...++++++.+++.++ ++|||||++.||..||||||+|+|+..+. ++...+.. ...++++||+||.+|.
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~~G~ 182 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCTGGI 182 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECCCCc
Confidence 3578999998887654 89999999999999999999999985321 11112211 2357899999999999
Q ss_pred hHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 116 RSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
|+..++..|++.||++|+.|+||+.+|...
T Consensus 183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 183 RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 999999999999999999999999999774
No 46
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.84 E-value=1.3e-20 Score=122.93 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=70.7
Q ss_pred cccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEE
Q 031899 40 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVG 110 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-------~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~ 110 (151)
..++++++.+++.++ .+|||||++ ||..||||||+|+|+..+. +.+......+ .+.++||+|
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~--------~~~~~~~~~~~~~~~~~iv~~ 72 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCY--------QTLPQVYALFSLAGVKLAIFY 72 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHH--------HHHHHHHHHhhhcCCCEEEEE
Confidence 357899999988764 789999999 9999999999999985221 1122222222 346789999
Q ss_pred eCC-ChhHHHHHHHHH----HCCC--CceeEccccHHHHH
Q 031899 111 CQS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR 143 (151)
Q Consensus 111 c~~-g~~a~~~~~~L~----~~G~--~~v~~l~GG~~~W~ 143 (151)
|.+ |.|+..++..|. +.|| .++++|+||+.+|.
T Consensus 73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 996 578777775543 4575 68999999999995
No 47
>PRK07411 hypothetical protein; Validated
Probab=99.83 E-value=6.2e-20 Score=142.41 Aligned_cols=104 Identities=29% Similarity=0.452 Sum_probs=83.8
Q ss_pred CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC
Q 031899 38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 114 (151)
....++++++.++++.+ .+|||||++.||..||||||+|+|+.++... ... .....++++++||+||.+|
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G 352 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMG 352 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCC
Confidence 34678999999888643 6899999999999999999999998533211 001 1233456789999999999
Q ss_pred hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899 115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv 149 (151)
.||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus 353 ~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 353 GRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 99999999999999975 57999999999886664
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.82 E-value=4.4e-20 Score=140.70 Aligned_cols=105 Identities=28% Similarity=0.409 Sum_probs=79.1
Q ss_pred CHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCC----------C---------CCCCHH---HHHHHHhc
Q 031899 43 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKNLK---FVEEVSTR 100 (151)
Q Consensus 43 ~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~~~---~~~~~~~~ 100 (151)
...++.++..++.+|||||++.||..||||||+|+|+...... + .+..+. .+...+..
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~ 83 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD 83 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence 4567777777889999999999999999999999999532210 0 011111 11222223
Q ss_pred cC-CCCeEEEEeC-CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899 101 FR-KHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148 (151)
Q Consensus 101 ~~-~~~~iv~~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 148 (151)
++ ++++||+||. +|.||..+++.|...|| +++.|+||+.+|+..+.+
T Consensus 84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~ 132 (345)
T PRK11784 84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID 132 (345)
T ss_pred cccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence 33 7889999995 78999999999999999 699999999999987653
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.7e-19 Score=131.74 Aligned_cols=114 Identities=23% Similarity=0.279 Sum_probs=95.8
Q ss_pred CccccCHHHHHHHHhC------CCEEEecCCh--hhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cC
Q 031899 38 VPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR 102 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~------~~~iiDvR~~--~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~ 102 (151)
....++++.+.+.+.. ++.+++++.. .+|..+|||||+++++..... ..++++++.+..++.. +.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3467899999887753 4566666655 899999999999999976552 4678888888888886 57
Q ss_pred CCCeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 103 KHDEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 103 ~~~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
.+.+||+|.+.+ ..|.++++.|+.+|+++|++|+||+++|.++|+|+++
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 899999999755 6799999999999999999999999999999999873
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.81 E-value=2.2e-19 Score=137.90 Aligned_cols=95 Identities=33% Similarity=0.522 Sum_probs=78.3
Q ss_pred ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHH-hccCCCCeEEEEeCCChhH
Q 031899 39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~~c~~g~~a 117 (151)
...++++++.++ ..+.+|||+|++.||..+|||||+|+|+.++ ..... ..+++++++|+||++|.+|
T Consensus 260 ~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~l-----------~~~~~~~~~~~~~~IvvyC~~G~rS 327 (355)
T PRK05597 260 GEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSAI-----------REGANPPSVSAGDEVVVYCAAGVRS 327 (355)
T ss_pred ccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHHh-----------hhccccccCCCCCeEEEEcCCCHHH
Confidence 346778888744 4568999999999999999999999999522 11111 1356789999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
..+++.|++.||++|+.|+||+.+|.++
T Consensus 328 ~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 328 AQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred HHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 9999999999999999999999999763
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.81 E-value=1e-19 Score=136.92 Aligned_cols=95 Identities=29% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCEEEecCChhhHhcCCCCCceeeccccccCC---CCC-------------------CCHHHHHHHHhccCCCCeEEEEe
Q 031899 54 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGC 111 (151)
Q Consensus 54 ~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~~~~iv~~c 111 (151)
+..|||||++.||..||||||+|+|+....+. ++. .-++.+..+....++++.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 35799999999999999999999999532210 000 01112333333345566699999
Q ss_pred C-CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899 112 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 112 ~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv 149 (151)
. +|.||..+++.|+..|| ++++|+||+.+|+..+.+.
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 5 78999999999999999 6999999999999887543
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.79 E-value=7.7e-19 Score=117.42 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCC----C------CCCCHHHHHHHHhccCCCCeEE
Q 031899 42 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----G------MTKNLKFVEEVSTRFRKHDEII 108 (151)
Q Consensus 42 i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~iv 108 (151)
|+++++.+++++ +++|||+|++.+|..+|||||+|+|+..+... + ++..++....+.. . ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-G-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-C-CCCeEE
Confidence 688999888864 48999999999999999999999998643311 0 1222222222222 2 578999
Q ss_pred EEeCCChh---------HHHHHHHHHH--CCCCceeEccccHHHHHhC
Q 031899 109 VGCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 109 ~~c~~g~~---------a~~~~~~L~~--~G~~~v~~l~GG~~~W~~~ 145 (151)
+||.++.+ +..++..|.. .++.+|++|+||+.+|.+.
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 99997754 5666777776 4678999999999999763
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.74 E-value=7.2e-18 Score=129.94 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC---CceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCCh
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 115 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 115 (151)
..++++++.+++.++ .+|||||++.||..|||| ||+|+|+..+... .+. ......++++ +||+||.+|.
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~-~~~l~~~~~~-~Ivv~C~sG~ 343 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADI-LHALSPIDGD-NVVVYCASGI 343 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhh-hhhccccCCC-cEEEECCCCh
Confidence 367899998888765 789999999999999998 5999998422100 000 1112233444 8999999999
Q ss_pred hHHHHHHHHHHCCCCc-eeEccccHH
Q 031899 116 RSMMAATDLLNAGFAG-ITDIAGGFA 140 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~-v~~l~GG~~ 140 (151)
||..++..|++.||++ |++|.||+.
T Consensus 344 RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 344 RSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hHHHHHHHHHHcCCCCceEEeccccC
Confidence 9999999999999986 999999975
No 54
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.68 E-value=3.1e-16 Score=114.46 Aligned_cols=136 Identities=18% Similarity=0.340 Sum_probs=102.6
Q ss_pred cccCccccccccccccccCccccCcccc-cC-----CccccCHHHHHHHH--------hCCCEEEecCChhhHh------
Q 031899 8 QRCDNIGFISSKILSFCPKASLRGNLEA-VG-----VPTSVPVRVAHELL--------QAGHRYLDVRTPEEFS------ 67 (151)
Q Consensus 8 ~~~~~v~~l~gg~~~w~~~~~~~~~~~~-~~-----~~~~i~~~~~~~~~--------~~~~~iiDvR~~~e~~------ 67 (151)
.++.+|++|+||+.+|+...-...+-.. .+ ....++...+..+. .+++..||.|+..+|.
T Consensus 112 fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~ 191 (286)
T KOG1529|consen 112 FGHTKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEP 191 (286)
T ss_pred hCccEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCC
Confidence 6889999999999999986543222111 01 11233333333222 2358999999998886
Q ss_pred -----cCCCCCceeeccccccCC-CCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 68 -----AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 68 -----~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.||||||+|+|+..++.. +....++.+...+.. +..++|+|+-|++|..+...+-.|.+.| .++.+|+|++
T Consensus 192 ~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~ 270 (286)
T KOG1529|consen 192 RSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSW 270 (286)
T ss_pred cccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccH
Confidence 689999999999888764 444447777777665 5568999999999999999999999999 6899999999
Q ss_pred HHHHh
Q 031899 140 AAWRQ 144 (151)
Q Consensus 140 ~~W~~ 144 (151)
..|..
T Consensus 271 ~Ew~~ 275 (286)
T KOG1529|consen 271 TEWAL 275 (286)
T ss_pred HHHhh
Confidence 99985
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.63 E-value=1.8e-15 Score=120.46 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=67.0
Q ss_pred HHHHHhCCCEEEecCChhhHhcCCCCC----ceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHH
Q 031899 47 AHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 122 (151)
Q Consensus 47 ~~~~~~~~~~iiDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~ 122 (151)
..+.+..+.++||||++.||..+|||| |+|+|+ ..+......+++++++|+||.+|.||..++.
T Consensus 400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~ 467 (482)
T PRK01269 400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQAL 467 (482)
T ss_pred HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHH
Confidence 333445678999999999999999999 999999 3444455567889999999999999999999
Q ss_pred HHHHCCCCceeEcc
Q 031899 123 DLLNAGFAGITDIA 136 (151)
Q Consensus 123 ~L~~~G~~~v~~l~ 136 (151)
.|++.||+||++|.
T Consensus 468 ~L~~~G~~nv~~y~ 481 (482)
T PRK01269 468 YLREQGFSNVKVYR 481 (482)
T ss_pred HHHHcCCccEEecC
Confidence 99999999999875
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.50 E-value=2.7e-14 Score=104.94 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=80.6
Q ss_pred ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899 39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a 117 (151)
-..++|++..+++.+ ++++||+|...||+.||..||++.+...+. .-+..+.+..+.+ ++++|+.||..|.|.
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr-----efP~~v~~~~~~~-~~KkVvmyCTGGIRC 185 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR-----EFPAWVEENLDLL-KDKKVVMYCTGGIRC 185 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh-----hhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence 357899999888865 499999999999999999999999984221 0112233333333 467999999999999
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
..+..+|+..||++|+-|+||+-.+.+.
T Consensus 186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 186 EKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 9999999999999999999999877553
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.1e-13 Score=103.21 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=74.9
Q ss_pred CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc------CCC
Q 031899 38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKH 104 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~------~~~ 104 (151)
....|+++.++.+++. .++|||+|-+.||..|||+||+|++.. +.+...+-.. .+.
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~ 222 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKR 222 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCc
Confidence 4568999999999874 266999999999999999999999984 2222222211 123
Q ss_pred CeEEEEeC-CChhHHHHHHHHHH------------CCCCceeEccccHHHHHhC
Q 031899 105 DEIIVGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 105 ~~iv~~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~ 145 (151)
.-+||||. +..|+..+|..|+. +-|..+++|+|||.+|-..
T Consensus 223 ~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 223 VILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred eeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 46899997 66899999999984 4566799999999999764
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.48 E-value=4.3e-13 Score=98.15 Aligned_cols=112 Identities=23% Similarity=0.303 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHhC-CCEEEecC---------ChhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cC
Q 031899 40 TSVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR 102 (151)
Q Consensus 40 ~~i~~~~~~~~~~~-~~~iiDvR---------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~ 102 (151)
.+++++.+.+.+.+ +++|||.- ...||..-|||||.++.++.... ..+++.++.+++.... ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 45677777777654 48999985 34678889999999999865432 3566666666665554 57
Q ss_pred CCCeEEEEeC--CC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899 103 KHDEIIVGCQ--SG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151 (151)
Q Consensus 103 ~~~~iv~~c~--~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 151 (151)
+++.+|||.+ .| ..|.+++|+++..|+++|.+|+||+.+|+++|+|+++
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 8889999988 66 4688999999999999999999999999999999863
No 59
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.42 E-value=4.1e-13 Score=100.55 Aligned_cols=105 Identities=25% Similarity=0.372 Sum_probs=80.9
Q ss_pred CccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc-CCCCeEEEEeCCC
Q 031899 38 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSG 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~c~~g 114 (151)
....++..+++++++++ .++||||++.||+..|+|+|+|||+.++..... +.....+ ...++|+++|..|
T Consensus 315 ~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 315 PDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRG 387 (427)
T ss_pred hhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCC
Confidence 34688999999999874 889999999999999999999999953321110 1111223 3467899999999
Q ss_pred hhHHHHHHHHHHCCCC-ceeEccccHHHHHhCCCCC
Q 031899 115 KRSMMAATDLLNAGFA-GITDIAGGFAAWRQNGLPT 149 (151)
Q Consensus 115 ~~a~~~~~~L~~~G~~-~v~~l~GG~~~W~~~g~pv 149 (151)
..|.++.+.|++...+ .|..+-||+.+|...-.|.
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~ 423 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN 423 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence 9999999999987653 5777889999998864443
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.96 E-value=2.3e-09 Score=79.80 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=75.2
Q ss_pred CccccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh-c-cCCCCeEE
Q 031899 38 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII 108 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~-------~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~iv 108 (151)
..+.|+++.++.+++.. .+|||+|-+.||..|||-+|+||... +.+...+. + +.--.-+|
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLi 308 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALI 308 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEE
Confidence 34689999999988752 66999999999999999999999873 33444333 2 23345689
Q ss_pred EEeC-CChhHHHHHHHHHH------------CCCCceeEccccHHHHHhC
Q 031899 109 VGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 109 ~~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~ 145 (151)
+.|. +..|+..+|..|+. +-|..|++|+||+.++-..
T Consensus 309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 9998 66899999999986 3456799999999887543
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.89 E-value=1e-05 Score=60.02 Aligned_cols=100 Identities=29% Similarity=0.349 Sum_probs=65.6
Q ss_pred CHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccC---------CCCCCC-------------HHHHHHHHhc
Q 031899 43 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG---------SGMTKN-------------LKFVEEVSTR 100 (151)
Q Consensus 43 ~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~---------~~~~~~-------------~~~~~~~~~~ 100 (151)
+.+....+...+..+||||+|.||..|+.|+++|+|.....+ ...... ..+.-.....
T Consensus 4 ~~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~ 83 (334)
T COG2603 4 TEQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKA 83 (334)
T ss_pred hHHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566677778899999999999999999999999853221 001110 0111111112
Q ss_pred cCCCCeEEEEeCC-ChhHHHHHHHH-HHCCCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQS-GKRSMMAATDL-LNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~-g~~a~~~~~~L-~~~G~~~v~~l~GG~~~W~ 143 (151)
+-.+.++-++|.. |.|+...+.+| ...|++ .--+.||+.+.+
T Consensus 84 f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 84 FQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 2235566666975 57999999999 778875 445678987754
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.75 E-value=0.00034 Score=45.20 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC--------------CceeeccccccCCCCCCCHHHHHHHHhccC-C
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 103 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp--------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~-~ 103 (151)
..++++++.++.+.| -.||+.|+..|-. +-| .-+|+|.. ....+.+.+..+...+. .
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESL 85 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhC
Confidence 467999999999999 5799999875521 111 13566653 11123344555544442 3
Q ss_pred CCeEEEEeCCChhHHHHHHH
Q 031899 104 HDEIIVGCQSGKRSMMAATD 123 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~ 123 (151)
.+||++||.+|.|+..++..
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHHH
Confidence 56999999999999765544
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.71 E-value=0.00041 Score=46.43 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=52.8
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCC----------CC--ceeeccccccCCCCCCCHHHHHHHHhccC-CCC
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA----------TG--AINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 105 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghI----------pg--Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 105 (151)
..++++++..+.+.+ -.|||.|+..|-....- +| -+++|... ..+ +++.+..+...+. .+.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~-~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDI-TPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCCC
Confidence 467888898888778 67999999876432111 23 24565431 111 3344444433332 368
Q ss_pred eEEEEeCCChhHHHHHHHH-HHCCCC
Q 031899 106 EIIVGCQSGKRSMMAATDL-LNAGFA 130 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L-~~~G~~ 130 (151)
||++||.+|.|+..++..+ ...|..
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 9999999999987766543 344653
No 64
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=97.45 E-value=0.00021 Score=54.41 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=62.6
Q ss_pred ccccccCccccccccccccccCccc--cC---c--ccccCCccccCHHHHHHHHhC-CCEEEecCChhhHhc---CCCC-
Q 031899 5 GDQQRCDNIGFISSKILSFCPKASL--RG---N--LEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT- 72 (151)
Q Consensus 5 ~~~~~~~~v~~l~gg~~~w~~~~~~--~~---~--~~~~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~---ghIp- 72 (151)
..+.+| ++.+|.||+.+|...... .+ . ......++.+...++.+.+.+ +..|||+|+..+|.. ||||
T Consensus 95 L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~ 173 (311)
T TIGR03167 95 LAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGL 173 (311)
T ss_pred HHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCC
Confidence 345678 588999999999774321 11 1 011123456777777766654 588999999999998 8888
Q ss_pred CceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCCh
Q 031899 73 GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 115 (151)
Q Consensus 73 gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 115 (151)
+.. |... .+ ...+...+..+++.++|++-|.+..
T Consensus 174 ~~q--psq~-----~f--e~~L~~~l~~~~~~~~i~~e~es~~ 207 (311)
T TIGR03167 174 GPQ--PSQK-----RF--ENALAEALRRLDPGRPIFVEDESRR 207 (311)
T ss_pred CCC--CchH-----HH--HHHHHHHHHhCCCCceEEEEeCchh
Confidence 431 2110 00 1223333334577788888887753
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.84 E-value=0.00015 Score=55.20 Aligned_cols=85 Identities=8% Similarity=0.053 Sum_probs=54.3
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCC--ChhH
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS--GKRS 117 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~--g~~a 117 (151)
.+-+++++.+.+.....++|+|....|+.+||||++|+|...+ ..++.++.. .+..+++++.-.. ....
T Consensus 14 ~i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~~--------~~~~~~l~~-~~~~~~i~l~~~~~~~~~f 84 (314)
T PRK00142 14 PIEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQT--------EAYMAWLKA-DPRFADIRFKISEDDGHAF 84 (314)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHHH--------HHHHHHHhh-CcCCCCceEEeccccCCCc
Confidence 4557788888887777889999999999999999999998311 112222222 1224555544333 1222
Q ss_pred ----HHHHHHHHHCCCC-cee
Q 031899 118 ----MMAATDLLNAGFA-GIT 133 (151)
Q Consensus 118 ----~~~~~~L~~~G~~-~v~ 133 (151)
.++...|...|++ ++.
T Consensus 85 ~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 85 PRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred ccceeeeeeeeeecCCCCCCC
Confidence 4566677777875 554
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.84 E-value=0.00043 Score=55.95 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=61.3
Q ss_pred ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc-----CCCCeEEEEeCC
Q 031899 39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGCQS 113 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~~c~~ 113 (151)
.+.++++++..+ ....++|.|...||..+|+++++|+|+.. -+..+++. ..+ ...+.++++...
T Consensus 621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~~--------~ea~l~~~-~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFNN--------HEADLDWL-RFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCccc--------hHHHHHHh-hcchHhHHhhCCeEEEeccc
Confidence 346677776555 44789999999999999999999999941 11112221 111 134555655444
Q ss_pred ChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 114 GKRSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 114 g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
..-+++....+..+-+.++.++++|+++..
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 445555555555555778889999998543
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.49 E-value=0.054 Score=37.23 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCccccCHHHHHHHHhCC-CEEEecCChhhHhcC---CCCCc--eeeccccccCC------------------------C
Q 031899 37 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------G 86 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~g---hIpgA--i~ip~~~~~~~------------------------~ 86 (151)
..+..+++++...+.+-+ -.|||.|++.|.... .++|. +|+|....... .
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 345678999998888767 679999999997753 34454 34554211110 0
Q ss_pred CC-CCHHHHHHHHhcc-CCCCeEEEEeCCC-hh-HHHHHHHHHHCCCCc
Q 031899 87 MT-KNLKFVEEVSTRF-RKHDEIIVGCQSG-KR-SMMAATDLLNAGFAG 131 (151)
Q Consensus 87 ~~-~~~~~~~~~~~~~-~~~~~iv~~c~~g-~~-a~~~~~~L~~~G~~~ 131 (151)
++ .....+..++..+ +...+++++|..| .| ...++-.|..+|...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 11 1133344444432 3346999999988 34 445566677888853
No 68
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.91 E-value=0.025 Score=44.94 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=50.9
Q ss_pred CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--------cc-----CCCCeEEEEeCCC------h
Q 031899 55 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--------RF-----RKHDEIIVGCQSG------K 115 (151)
Q Consensus 55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--------~~-----~~~~~iv~~c~~g------~ 115 (151)
+.|||+|+.++|..||+..|.|+...- ++.++..++.... .+ ..+..+.|. ++| .
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~Y 400 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDNY 400 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHHH
Confidence 679999999999999999999988742 2223332222211 12 123455554 444 2
Q ss_pred hHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 116 RSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
.-..+|.+|++.- ..|.++.||+....
T Consensus 401 mnMviA~FlQKnk-~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 401 MNMVIAMFLQKNK-LYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHhcCc-eEEEEecchHHHHH
Confidence 2334555555543 46999999998765
No 69
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.80 E-value=0.016 Score=45.32 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=57.4
Q ss_pred ccccccCccccccccccccccCccccCcccccCCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccC
Q 031899 5 GDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG 84 (151)
Q Consensus 5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~ 84 (151)
..+.+|++|.+|+||+..|....... .....++..++.. | +.++++.
T Consensus 77 L~~~G~~~v~~l~GG~~~W~~~g~p~------~~~~~~s~~~~~~----------------y-------~r~i~l~---- 123 (376)
T PRK08762 77 LRELGYTRVASVAGGFSAWKDAGLPL------ERPRLLTDEQDER----------------Y-------SRHLRLP---- 123 (376)
T ss_pred HHHcCCCceEeecCcHHHHHhcCCcc------ccccCCCHHHHHH----------------H-------HHhcchh----
Confidence 45688999999999999997652211 1223445555433 2 2233331
Q ss_pred CCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 85 SGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.+-.+....+ .+++|+++ +.|..+..++..|...|+.++.++++..
T Consensus 124 -------~~g~~~q~~l-~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 124 -------EVGEEGQRRL-LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred -------hcCHHHHHHH-hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 0011112223 34455555 7777788899999999999999999874
No 70
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.17 E-value=0.017 Score=42.84 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=57.3
Q ss_pred ccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeecccccc----CCCCCCCHHHHHHHHhc-cC----CCCeEEEE
Q 031899 41 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRV----GSGMTKNLKFVEEVSTR-FR----KHDEIIVG 110 (151)
Q Consensus 41 ~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~----~~~~~~~~~~~~~~~~~-~~----~~~~iv~~ 110 (151)
.++.+++.+.+.. +++++|+|+ +..||.+|+|+-+..+. ..+.++-...+...... .. +..++|.|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily 80 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY 80 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence 3567777766654 489999999 66899999998774222 11111111111111110 11 23567888
Q ss_pred eCCC--h----h-HHH---HHHHHHHCCCCceeEccccHHHHHhC
Q 031899 111 CQSG--K----R-SMM---AATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 111 c~~g--~----~-a~~---~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
..+. . . +.. .-+.++..|+ .++.|.|||..++.+
T Consensus 81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 7652 0 0 111 2245566787 688999999887664
No 71
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=94.49 E-value=0.09 Score=40.73 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=38.1
Q ss_pred cccccCccccccccccccccCcc--ccCcc-----cccCCccccCHHHH-HHHHhCCCEEEecCChhhHh
Q 031899 6 DQQRCDNIGFISSKILSFCPKAS--LRGNL-----EAVGVPTSVPVRVA-HELLQAGHRYLDVRTPEEFS 67 (151)
Q Consensus 6 ~~~~~~~v~~l~gg~~~w~~~~~--~~~~~-----~~~~~~~~i~~~~~-~~~~~~~~~iiDvR~~~e~~ 67 (151)
...+| ++..|.||+.+|..... +.... -....++.....++ .++.+.+..+||+|+..+|.
T Consensus 110 ~~~G~-~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehr 178 (345)
T PRK11784 110 KEAGI-DVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHR 178 (345)
T ss_pred HHcCC-CcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhc
Confidence 45677 58899999999987432 11100 11122334445554 44445568899999999998
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=0.51 Score=30.90 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHHhCC-CEEEecCChhhHh-------------cCCCCCceeeccccccCCCCCCCHHHHHHHHhccC-C
Q 031899 39 PTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 103 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~-~ 103 (151)
...++++++.++...+ ..||--|+..|-. ..-+. -.++|.. +.-..+..++.+...++ .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEA 86 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHh
Confidence 3567899999998888 5689999755421 11111 3345542 11123345555555553 4
Q ss_pred CCeEEEEeCCChhHHHHHHHHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLL 125 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~ 125 (151)
+.||+-||.+|.||..++..-+
T Consensus 87 egPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 87 EGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred CCCEEeeecCCchHHHHHHHHH
Confidence 7899999999999987665433
No 73
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=93.66 E-value=0.34 Score=32.00 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCCC-hhHHH-
Q 031899 47 AHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG-KRSMM- 119 (151)
Q Consensus 47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~g-~~a~~- 119 (151)
+..+.+.+ ..||+++...+.....--.-+++|..+.. .....+.+...... ...+.+|+|+|..| .||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHH
Confidence 34444556 57999987654221100123466654311 11112223332222 35678999999998 46553
Q ss_pred -HHHHHHHCCCC
Q 031899 120 -AATDLLNAGFA 130 (151)
Q Consensus 120 -~~~~L~~~G~~ 130 (151)
++..+...|++
T Consensus 96 ~~~yl~~~~~~~ 107 (138)
T smart00195 96 IIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHhCCC
Confidence 34455666763
No 74
>PLN02727 NAD kinase
Probab=93.39 E-value=0.49 Score=41.09 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=48.7
Q ss_pred cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC------------CceeeccccccCCCCCCCHHHHHHHHhcc-C-CC
Q 031899 40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KH 104 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 104 (151)
..++++++..+.+.+ -.||+.|+..|- .+..+ .-+|+|.. ......++.+.++.+.+ + ..
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcC
Confidence 478999999998888 569999997761 22211 23566652 12233456677776666 3 47
Q ss_pred CeEEEEeCCChh
Q 031899 105 DEIIVGCQSGKR 116 (151)
Q Consensus 105 ~~iv~~c~~g~~ 116 (151)
+||++||.+|.+
T Consensus 342 kPVLvHCKSGar 353 (986)
T PLN02727 342 KPIYLHSKEGVW 353 (986)
T ss_pred CCEEEECCCCCc
Confidence 899999999973
No 75
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=93.28 E-value=0.45 Score=31.23 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=41.8
Q ss_pred HHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCCHHHHHHH----HhccCCCCeEEEEeCCCh-hHH
Q 031899 47 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEV----STRFRKHDEIIVGCQSGK-RSM 118 (151)
Q Consensus 47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iv~~c~~g~-~a~ 118 (151)
...+.+.+ ..|||+++..+...-+.+| -.++|+.+.... .....+... ......+++|+|+|..|. ||.
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 33444456 6799999988752222232 345665432211 111222222 222345689999999884 665
Q ss_pred H--HHHHHHHCCC
Q 031899 119 M--AATDLLNAGF 129 (151)
Q Consensus 119 ~--~~~~L~~~G~ 129 (151)
. ++..+...|+
T Consensus 97 ~~~~~~l~~~~~~ 109 (139)
T cd00127 97 TLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHcCC
Confidence 3 3344455554
No 76
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=89.64 E-value=1.6 Score=30.16 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeE
Q 031899 102 RKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 102 ~~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~ 134 (151)
++..+|+++|+.|. .+-.+++.|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67889999999874 466789999999995 665
No 77
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=86.95 E-value=0.85 Score=31.34 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCCeEEEEe-C----CChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 102 RKHDEIIVGC-Q----SGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 102 ~~~~~iv~~c-~----~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
+++..+++++ + .|.....++..|+++|..+...||||-+.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 4555665555 4 35677789999999999999999998654
No 78
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=86.42 E-value=3.5 Score=26.76 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=39.4
Q ss_pred HHhCC-CEEEecCChhhH---hcCCCCCceeeccccccCCCCCCCHHHHHHHHh-ccCCCCeEEEEeCCC-hhHHH-HHH
Q 031899 50 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSG-KRSMM-AAT 122 (151)
Q Consensus 50 ~~~~~-~~iiDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~c~~g-~~a~~-~~~ 122 (151)
+.+.+ ..||+++...+. ....--.-.++|..+.........-..+..... ....+.+|+|+|..| .||.. ++.
T Consensus 14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 33445 468999976543 222222345666543111111111111222222 235678999999988 45543 333
Q ss_pred -HHHHCCC
Q 031899 123 -DLLNAGF 129 (151)
Q Consensus 123 -~L~~~G~ 129 (151)
.+...|.
T Consensus 94 yLm~~~~~ 101 (133)
T PF00782_consen 94 YLMKKNGM 101 (133)
T ss_dssp HHHHHHTS
T ss_pred HHHHHcCC
Confidence 4455565
No 79
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.39 E-value=1.5 Score=30.65 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=18.7
Q ss_pred cCCCCeEEEEeCCC-hhHH-HH-HHHHHHCCC
Q 031899 101 FRKHDEIIVGCQSG-KRSM-MA-ATDLLNAGF 129 (151)
Q Consensus 101 ~~~~~~iv~~c~~g-~~a~-~~-~~~L~~~G~ 129 (151)
+.++++|+|+|..| .||. .+ |+.+...|.
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 45677999999987 4544 33 345555444
No 80
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=86.06 E-value=3.6 Score=29.55 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=27.2
Q ss_pred HhccCC--CCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 98 STRFRK--HDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 98 ~~~~~~--~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
.+..+. ..+|+++|++| ...-.+|+.|...|++ |.++
T Consensus 41 ~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 41 LREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred HHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 334554 56899999876 4577899999999984 5543
No 81
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=85.47 E-value=0.72 Score=31.99 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHHhCC-CEEEecCChhhHhcCCCCC-----------ceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeC
Q 031899 45 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 112 (151)
Q Consensus 45 ~~~~~~~~~~-~~iiDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 112 (151)
.++.++...+ ..||=.=+..|...-.+|+ ..++|+.+...+....--+.++++...+..+++|+++|.
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3455565555 2344455666665544542 236666432211110001123333444567889999999
Q ss_pred CC-hhHH-HHHHHHHHCC
Q 031899 113 SG-KRSM-MAATDLLNAG 128 (151)
Q Consensus 113 ~g-~~a~-~~~~~L~~~G 128 (151)
.| .|+. .||-.|.++|
T Consensus 142 GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 87 4554 4666666665
No 82
>PRK12361 hypothetical protein; Provisional
Probab=85.01 E-value=3.2 Score=34.18 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=42.1
Q ss_pred CHHHHHHHHhCC-CEEEecCChhhHhc-CCCC---CceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCC
Q 031899 43 PVRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQS 113 (151)
Q Consensus 43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~-ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~ 113 (151)
++.++..+.+.+ ..|||++.+.+... ...+ .-.++|..+... ++.+.+++..+. ...+.+|+|+|..
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 455566665566 67999995332211 1112 245677643221 233444443333 3457889999998
Q ss_pred C-hhHH-HHHHHHH
Q 031899 114 G-KRSM-MAATDLL 125 (151)
Q Consensus 114 g-~~a~-~~~~~L~ 125 (151)
| .||. .++.+|.
T Consensus 185 G~sRSa~vv~ayLm 198 (547)
T PRK12361 185 GRGRSVLVLAAYLL 198 (547)
T ss_pred CCCcHHHHHHHHHH
Confidence 8 4544 3444444
No 83
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=84.64 E-value=7.4 Score=26.86 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=17.8
Q ss_pred CCCCeEEEEeCCC-hhHH-HHHHHHHHCC
Q 031899 102 RKHDEIIVGCQSG-KRSM-MAATDLLNAG 128 (151)
Q Consensus 102 ~~~~~iv~~c~~g-~~a~-~~~~~L~~~G 128 (151)
.++.+|+|+|..| .|+. .++..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4588999999988 4554 3445554444
No 84
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.25 E-value=9.1 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.4
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhh
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEE 65 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e 65 (151)
..|+.+++.+....+.-||||..|.|
T Consensus 6 SPin~eEA~eAieGGAdIiDVKNP~E 31 (235)
T COG1891 6 SPINREEAIEAIEGGADIIDVKNPAE 31 (235)
T ss_pred ccCCHHHHHHHhhCCCceEeccCccc
Confidence 35678888888888999999999988
No 85
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=84.21 E-value=2.5 Score=34.75 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHHHHhccC--CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 92 KFVEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 92 ~~~~~~~~~~~--~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+....+...+. .+.|+|++.+.-..+..+|..|..+|| +++.|.||-
T Consensus 503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 33444444332 467899999998888899999999999 799999985
No 86
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=82.16 E-value=2.9 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=24.0
Q ss_pred CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
++|+++|+.| ..+-.+|+.|...|+ +|.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 6799999865 567789999999999 56654
No 87
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=81.93 E-value=3.2 Score=30.85 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCcee
Q 031899 88 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~ 133 (151)
..+-+.++.....+.++..+++||.+-.........|++.||.++.
T Consensus 172 p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 172 PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 3445678888888888999999999999999999999999997654
No 88
>PRK10565 putative carbohydrate kinase; Provisional
Probab=81.59 E-value=5.3 Score=32.75 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=26.0
Q ss_pred ccCCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 100 RFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
.++..++|+++|+.| ..+-.+|+.|...|| +|.++
T Consensus 56 ~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~-~V~v~ 93 (508)
T PRK10565 56 AYPDARHWLVLCGHGNNGGDGYVVARLAQAAGI-DVTLL 93 (508)
T ss_pred hcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCC-ceEEE
Confidence 345566799999876 556688999999999 45544
No 89
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=81.33 E-value=6.6 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=26.2
Q ss_pred hccCCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 99 TRFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
..++..++|+++|+.| ..+-.+|+.|...|+ .|+++
T Consensus 40 ~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 40 QAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred HHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 3345567899999865 567788999988776 46654
No 90
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=81.17 E-value=5.4 Score=32.33 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=23.8
Q ss_pred CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
++|+|+|+.| ..+-.+|+.|...|++ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 6899999876 4566899999999995 5543
No 91
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=80.33 E-value=3.8 Score=28.26 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=22.9
Q ss_pred CHHHHHHHHhc-cC-CCCeEEEEeCCC-hhHHHHHHHHHH-CCCC
Q 031899 90 NLKFVEEVSTR-FR-KHDEIIVGCQSG-KRSMMAATDLLN-AGFA 130 (151)
Q Consensus 90 ~~~~~~~~~~~-~~-~~~~iv~~c~~g-~~a~~~~~~L~~-~G~~ 130 (151)
..+.+.+.+.. ++ .+.||+++|..| .|...+...|++ .|..
T Consensus 75 ~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 75 SEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp -HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 34555555554 33 468999999988 566666666654 4553
No 92
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=80.20 E-value=4.5 Score=31.07 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=37.0
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC-ceeEccccHH
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFA 140 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~ 140 (151)
.+..+.....++.+++++|++-..+..++..|++.+.. ++..+.|++.
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 34444444456788999999988899999999998874 6888888863
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=79.67 E-value=10 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
..++++|+|++-..+..++..|.+.|+ .+..|.|..
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~ 507 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGL-PHQVLNAKQ 507 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCc
Confidence 357899999999999999999999999 577788764
No 94
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=78.90 E-value=7.3 Score=28.75 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHHHHhCC-CEEEecCCh----hhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCCC
Q 031899 44 VRVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG 114 (151)
Q Consensus 44 ~~~~~~~~~~~-~~iiDvR~~----~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~g 114 (151)
+..+.++...+ ..||.+..+ .+|..-.|. -.++|+. ++..++.+.+.++... +..+.+|+|+|..|
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AG 180 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAG 180 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCC
Confidence 34455555556 457777542 233322221 1234442 3334444544444443 34678999999987
Q ss_pred -hh-HHHHHHHHHHCCCC
Q 031899 115 -KR-SMMAATDLLNAGFA 130 (151)
Q Consensus 115 -~~-a~~~~~~L~~~G~~ 130 (151)
.| ...++.+|.+.|++
T Consensus 181 lGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 181 LGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 45 44566677677874
No 95
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=78.33 E-value=7.4 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.7
Q ss_pred CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
++|+|+|+.| ..+-.+|+.|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 6899999876 4566789999999994 6554
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=77.16 E-value=12 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.4
Q ss_pred cCCCCeEEEEeCC-C---hhHHHHHHHHHHCCCCceeEccccH
Q 031899 101 FRKHDEIIVGCQS-G---KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 101 ~~~~~~iv~~c~~-g---~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+..+..+|..|.. + .....+...|++.|.+.+.++.||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 4567778888863 3 3455678889999999998888885
No 97
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=76.60 E-value=8.9 Score=26.26 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHhccCCCCeEEEEeCCC--hhHHHHHHHHHH---CCCCceeEccccHHH
Q 031899 94 VEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAA 141 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g--~~a~~~~~~L~~---~G~~~v~~l~GG~~~ 141 (151)
.+.+...++++..+|+.+..| ..|...|..|.. .|..++..+-||-.+
T Consensus 57 ~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G 109 (155)
T PF02590_consen 57 GERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADG 109 (155)
T ss_dssp HHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB
T ss_pred HHHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 344555567788888888888 467778887765 688788888887543
No 98
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.21 E-value=4.9 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCeEEEEeCCChhHHHHHHHH----HHCCCCceeEccccHHHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDL----LNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L----~~~G~~~v~~l~GG~~~W 142 (151)
.++|++.|++|..+..++..+ ++.|++ +.+-..++..-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 467999999997766666544 557873 55555555543
No 99
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=75.58 E-value=11 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.+.++++||.+-..+..++..|++.+. ++..+.|+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999998888889999988776 577788775
No 100
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=74.89 E-value=6.8 Score=29.91 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred CCeEEEEe----CCCh--hHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 104 HDEIIVGC----QSGK--RSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 104 ~~~iv~~c----~~g~--~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+.++|+.+ ..|. .+..+.+.|++.|+ ++..+.-|-.+|..+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia 157 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIA 157 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEe
Confidence 44555553 4454 45568889999999 566666677777553
No 101
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=73.83 E-value=8.7 Score=31.52 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=30.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+|++|++...+..++..|...|| ++..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCC
Confidence 589999999999999999999998 6888999864
No 102
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=73.53 E-value=15 Score=24.29 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=7.9
Q ss_pred HHHHh-CCCEEEecC
Q 031899 48 HELLQ-AGHRYLDVR 61 (151)
Q Consensus 48 ~~~~~-~~~~iiDvR 61 (151)
..+++ .++.++|..
T Consensus 23 ~~~l~~~GfeVi~lg 37 (132)
T TIGR00640 23 ATAYADLGFDVDVGP 37 (132)
T ss_pred HHHHHhCCcEEEECC
Confidence 33443 457777765
No 103
>PTZ00110 helicase; Provisional
Probab=73.01 E-value=10 Score=31.35 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...++||||++-..+..++..|+..|+ .+..+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCCc
Confidence 567899999999899999999999999 4667788753
No 104
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.97 E-value=6.4 Score=31.30 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
+-.++.... +.+++++|++...+.+.+-+|+..|| +..-|.|-+..
T Consensus 291 LV~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqmsq 336 (476)
T KOG0330|consen 291 LVYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQMSQ 336 (476)
T ss_pred HHHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCc-ceecccchhhH
Confidence 333444433 47899999999999999999999999 46667776654
No 105
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=72.80 E-value=12 Score=23.21 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=23.0
Q ss_pred eEEEEeCCChh-HHHHH----HHHHHCCCCceeEccccHHHH
Q 031899 106 EIIVGCQSGKR-SMMAA----TDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 106 ~iv~~c~~g~~-a~~~~----~~L~~~G~~~v~~l~GG~~~W 142 (151)
+|++.|++|.. |..++ ..|.+.|+ ++.+....+...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi-~~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNI-PVELIQCRVNEI 44 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCC-eEEEEEecHHHH
Confidence 68999999964 33333 45667888 465555555544
No 106
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.67 E-value=15 Score=23.81 Aligned_cols=10 Identities=20% Similarity=0.198 Sum_probs=5.9
Q ss_pred CCCEEEecCC
Q 031899 53 AGHRYLDVRT 62 (151)
Q Consensus 53 ~~~~iiDvR~ 62 (151)
.++.+++...
T Consensus 26 ~G~~vi~lG~ 35 (122)
T cd02071 26 AGFEVIYTGL 35 (122)
T ss_pred CCCEEEECCC
Confidence 4566666654
No 107
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=72.63 E-value=6 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=24.6
Q ss_pred CeEEEEeCCChhHHHHHHHH----HHCCCCceeEccccHHHH
Q 031899 105 DEIIVGCQSGKRSMMAATDL----LNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L----~~~G~~~v~~l~GG~~~W 142 (151)
++|++.|++|..++.++..+ ++.|++ +.+-..+...-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 36899999998777666654 557873 55555555443
No 108
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.57 E-value=9 Score=30.92 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
+++..|+||++-..+..++..|+..|+ ++..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~-~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGI-AAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCC-CeeEeeCCCC
Confidence 456679999999999999999999998 5777888864
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=72.17 E-value=8.2 Score=32.67 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+..+...+..+.+++|+|++-.++..++..|.+.|+ ++..+.|++.
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~ 481 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCC
Confidence 3334433445678899999999999999999999999 5777767654
No 110
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=70.44 E-value=8.4 Score=32.23 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+..-|+||.+-..+...+..|...|+ ++..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCC
Confidence 456679999999999999999999998 6888889874
No 111
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=68.75 E-value=7.2 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=24.9
Q ss_pred eEEEEeCCChhHHHHHHH----HHHCCCCceeEccccHHHH
Q 031899 106 EIIVGCQSGKRSMMAATD----LLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~----L~~~G~~~v~~l~GG~~~W 142 (151)
+|++.|++|..|..++.. +++.|+ ++.+...+...-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHH
Confidence 488999999777766664 456788 466666665544
No 112
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=68.57 E-value=11 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++|+++++ +|.....++..|++.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578888876 78888899999999999888765
No 113
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=68.32 E-value=20 Score=26.25 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHhccC---CCCeEEEEeCCC-hhHHH----HHHHHHHCCCCceeEc
Q 031899 92 KFVEEVSTRFR---KHDEIIVGCQSG-KRSMM----AATDLLNAGFAGITDI 135 (151)
Q Consensus 92 ~~~~~~~~~~~---~~~~iv~~c~~g-~~a~~----~~~~L~~~G~~~v~~l 135 (151)
..++.+...++ ++..+|++|.+. ..+.. +-.+|.+.||++|++-
T Consensus 122 ~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 122 ICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 34555555655 677889999654 22222 2245678899988753
No 114
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=68.31 E-value=4.9 Score=32.41 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=34.6
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCCceeEccccH---------HHHHhCCCCC
Q 031899 107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---------AAWRQNGLPT 149 (151)
Q Consensus 107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~---------~~W~~~g~pv 149 (151)
=|+||++-....++|-.|.-.|+ +...|..|+ ++|.+...||
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhcCCCCE
Confidence 59999999999999999999998 455666666 4798888776
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=68.04 E-value=13 Score=31.66 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=35.8
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+..+.....++..++++|++-.++..++..|.+.|+ ++..+.|++.
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~ 477 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCC
Confidence 3444444456678899999999999999999999998 5667767654
No 116
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=67.93 E-value=9.1 Score=23.00 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=17.0
Q ss_pred eEEEEeCCChhHHHHH-H----HHHHCCCC
Q 031899 106 EIIVGCQSGKRSMMAA-T----DLLNAGFA 130 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~-~----~L~~~G~~ 130 (151)
+|++.|++|..++.++ . .+++.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 4889999996554444 4 45667874
No 117
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=67.69 E-value=7.7 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=23.7
Q ss_pred eEEEEeCCChhHHHHHHHH----HHCCCCceeEccccHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDL----LNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L----~~~G~~~v~~l~GG~~~W 142 (151)
+|++.|++|..++.++..+ ++.|++ +.+-..++..-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 3789999997766666544 557874 55555555443
No 118
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=66.89 E-value=8.7 Score=32.16 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
++...|+||++-..+..++..|...|+ ++..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 456789999999889999999999998 5778888873
No 119
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=66.70 E-value=10 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
...+++||++-..+..++..|...|+ ++..+.|++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 46789999999889999999999998 688888876
No 120
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=66.40 E-value=27 Score=23.98 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHhccCCCCeEEEEeCCC--hhHHHHHHHHHH---CCCCceeEccccHHHH
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 142 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g--~~a~~~~~~L~~---~G~~~v~~l~GG~~~W 142 (151)
..+.+...++++..+|+.+..| ..|...|..|.+ .|..++..+-||-.++
T Consensus 56 E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 56 EGERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3444555677777788888777 567788888765 3555788888875443
No 121
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=66.20 E-value=9.4 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...+++||++-..+..++..|...|+ ++..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 45689999999999999999999998 6888888764
No 122
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=65.98 E-value=14 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=17.9
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccH
Q 031899 106 EIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 106 ~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+|+|+|... -||..|...|+.++-.++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 466666543 4555555555554433455555454
No 123
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=65.65 E-value=4.9 Score=31.12 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=27.5
Q ss_pred ccccCHHHHHHHH-------hCCCEEEecCChhhHhcCCCCCc
Q 031899 39 PTSVPVRVAHELL-------QAGHRYLDVRTPEEFSAGHATGA 74 (151)
Q Consensus 39 ~~~i~~~~~~~~~-------~~~~~iiDvR~~~e~~~ghIpgA 74 (151)
...++++++.+++ +.+..+||+|++. |...++|+-
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 3568998888776 2458899999988 998888853
No 124
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=65.52 E-value=9.6 Score=31.72 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...+++|||++-..+..++..|...|+ ++..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 456789999999999999999999998 6888888754
No 125
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=65.24 E-value=13 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...++++||++-..+..++..|...|+ .+..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 456789999999999999999999998 5778888863
No 126
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=65.19 E-value=16 Score=30.39 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
+.+.|+||++-..+..++..|...|+ ++..+.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~-~~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGI-SALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence 56789999998889899999999998 5777888864
No 127
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=65.12 E-value=18 Score=23.76 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=26.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+++++++ +.|..+..++..|...|+++++++.--.
T Consensus 12 ~~~vlvi-GaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVI-GAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEE-SSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEE-CCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5566665 5677777888999999998888876443
No 128
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=64.98 E-value=12 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeEccc
Q 031899 103 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 103 ~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
+++.||++++| |..+.+..++|+++|-+.|++--+
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 58899999986 788999999999999999886543
No 129
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=64.94 E-value=14 Score=33.41 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
+...||||.+-..+..++..|...|+ ++..|.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCC
Confidence 45679999998889999999999999 5888999974
No 130
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=64.89 E-value=14 Score=29.72 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=28.3
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G~~~v~~l~GG~~~W~ 143 (151)
.+..-..+++|++|..+..+|-.|.+. |-..+..+.|+|.+|.
T Consensus 130 ~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 130 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 444435788899998877766665432 5445667788777664
No 131
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=64.13 E-value=18 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
+..++||||.+-..+..++..|+..|+ ++..+.|...
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~s 376 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKS 376 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCc-ceeeeccccc
Confidence 456899999999999999999999998 6777888764
No 132
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.89 E-value=9 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=28.6
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
-|++|.+-..+.+++..|++.|| .|.+|.|-+.
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~ 365 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLT 365 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCc-eeEEeeccch
Confidence 36679998899999999999999 6999999764
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.44 E-value=12 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHHCCCCceeEcc-ccHHHHHhC
Q 031899 122 TDLLNAGFAGITDIA-GGFAAWRQN 145 (151)
Q Consensus 122 ~~L~~~G~~~v~~l~-GG~~~W~~~ 145 (151)
..|+.+||.||.+.. .|..+|.+.
T Consensus 112 ~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 112 RNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHcCCCceEEEECCcccCCCCC
Confidence 348889999988665 478888763
No 134
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=61.57 E-value=19 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
++++++++. .+|.....+...|++.|.+.+..
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 577888876 58888889999999999876654
No 135
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=61.38 E-value=14 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=18.8
Q ss_pred CeEEEEeCCChhHHHHHHHH----HHCCCC
Q 031899 105 DEIIVGCQSGKRSMMAATDL----LNAGFA 130 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L----~~~G~~ 130 (151)
++|++.|+.|..+..++..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999998877777433 456663
No 136
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=61.30 E-value=21 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=34.4
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
...++|++|.|.+-..|..++..|.+.|+. ..+|.+...+.
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~ 481 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEK 481 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChH
Confidence 367899999999999999999999999994 66787776543
No 137
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=61.12 E-value=42 Score=21.66 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l 135 (151)
+.+.......+++.++++-++... +-..+...+++.|++++.+.
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 344444444566778888887663 45567778899999988754
No 138
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=61.11 E-value=8.2 Score=28.58 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHHHHHhcc-CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 92 KFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 92 ~~~~~~~~~~-~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
..++.....+ .++..+++|+.+=....+....|++.||.++..+.
T Consensus 126 ~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 4677777778 56788999999888999999999999998776554
No 139
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=60.97 E-value=15 Score=22.21 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=19.1
Q ss_pred eEEEEeCCChhHHHH-H----HHHHHCCCCceeEccccHH
Q 031899 106 EIIVGCQSGKRSMMA-A----TDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~-~----~~L~~~G~~~v~~l~GG~~ 140 (151)
+++++|++|..++.. + +.+.+.|.. +.+-..++.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~ 40 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAID 40 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchh
Confidence 689999998544332 3 445556653 333334443
No 140
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=60.47 E-value=33 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHh---ccCCCCeEEEEeCCC-hhHH
Q 031899 85 SGMTKNLKFVEEVST---RFRKHDEIIVGCQSG-KRSM 118 (151)
Q Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~~iv~~c~~g-~~a~ 118 (151)
+...+.++.++.+.. .++++..++|.|..| .|..
T Consensus 102 d~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTT 139 (149)
T PF14566_consen 102 DHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTT 139 (149)
T ss_dssp TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHH
T ss_pred CcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHH
Confidence 344555666666554 357889999999988 3443
No 141
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=60.30 E-value=42 Score=21.34 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHhccCCCCeEEEEeCCCh--hHHHHHHHHHHCCCCceeEccc
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~--~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.+......++.+..++++|+-+. -...++..+ ...++++++.|
T Consensus 46 ~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 46 KLEEAIEELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HHHHHHHhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 34444555677889999998443 233333333 33445666654
No 142
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=60.22 E-value=13 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...+++||++-..+..++..|...|+ ++..+.|++.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~ 280 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKS 280 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence 45789999998889999999999998 5777888764
No 143
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=60.21 E-value=48 Score=28.51 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=53.3
Q ss_pred cCHHHHHHHHh----CC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899 42 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 116 (151)
Q Consensus 42 i~~~~~~~~~~----~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 116 (151)
++.+++.++.+ -+ -.||-|++.+|....---|+.-|-.+...-.....+......+...+++ .+++++.+|..
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~--~~~~VsESGI~ 221 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPD--DVIKVAESGVF 221 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCC--CcEEEEcCCCC
Confidence 34445555543 23 5788999998886433334443333211111112233555666666764 35777899998
Q ss_pred HHHHHHHHHHCCCCce
Q 031899 117 SMMAATDLLNAGFAGI 132 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v 132 (151)
+..-...|.+.|++-+
T Consensus 222 ~~~d~~~l~~~G~dav 237 (695)
T PRK13802 222 GAVEVEDYARAGADAV 237 (695)
T ss_pred CHHHHHHHHHCCCCEE
Confidence 8888888999999654
No 144
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=59.96 E-value=35 Score=24.53 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc---ccHHHHHhCCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 150 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~pv~ 150 (151)
+.++++|+++.+ +|.....++..|++.|..-+. +++ ||.......|.|+.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~ 173 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLS 173 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEE
Confidence 456788998876 688888899999999975322 344 55555555677763
No 145
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=59.80 E-value=10 Score=25.08 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=21.7
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHCCCC-ceeEccccHHH
Q 031899 106 EIIVGCQSG-KRSMMAATDLLNAGFA-GITDIAGGFAA 141 (151)
Q Consensus 106 ~iv~~c~~g-~~a~~~~~~L~~~G~~-~v~~l~GG~~~ 141 (151)
+|+|+|... -||..+...|+...-+ ++.+...|+..
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~ 39 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSG 39 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCC
Confidence 577777654 4666666666654332 56666666644
No 146
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=59.78 E-value=40 Score=23.16 Aligned_cols=47 Identities=21% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHHhccCCCCeEEEEeCCC--hhHHHHHHHHH---HCCCCceeEccccHH
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLL---NAGFAGITDIAGGFA 140 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g--~~a~~~~~~L~---~~G~~~v~~l~GG~~ 140 (151)
.-+.+...++++..+|+..-.| ..|...|..|. ..| .++..+-||-.
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~ 107 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGAD 107 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcc
Confidence 4455566677777777766566 56777777765 457 77888888754
No 147
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.73 E-value=35 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCChhH-HHHHHHHHHCCCC
Q 031899 103 KHDEIIVGCQSGKRS-MMAATDLLNAGFA 130 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a-~~~~~~L~~~G~~ 130 (151)
.+.++++..+++.++ ...+..|+.+|+.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 468899998887655 6788888999984
No 148
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=59.59 E-value=17 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred ccccCHHHHHHHHhCC--CEEEecCChhh
Q 031899 39 PTSVPVRVAHELLQAG--HRYLDVRTPEE 65 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~--~~iiDvR~~~e 65 (151)
...|+-+++.++..++ +.|+|..+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3578999999999876 88999997554
No 149
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=58.93 E-value=22 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.1
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
...++...-|++|++|..+..+|-.|.. .|-+.+..++|++.+|.
T Consensus 97 ~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 97 EITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 3344444568889999887776665543 35456777888887764
No 150
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=58.69 E-value=25 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...++++|+|++-..+..++..|.+.|+ .+..|.|...
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi-~~~~L~~~~~ 463 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGI-PHNLLNAKNA 463 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCcc
Confidence 4578999999999999999999999999 5777888743
No 151
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=58.56 E-value=18 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=27.8
Q ss_pred CCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~ 134 (151)
.+++||+++++ |..+..+.++|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 47889999886 788889999999999998875
No 152
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=58.13 E-value=8 Score=28.76 Aligned_cols=91 Identities=24% Similarity=0.254 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHh----CC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCCh
Q 031899 41 SVPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 115 (151)
Q Consensus 41 ~i~~~~~~~~~~----~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 115 (151)
.++.+++.++.+ -+ -.+|.|++.+|....---|+.-+-.+...-...-.+.+....+...++++ +++++.+|.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI 218 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGI 218 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCC
Confidence 445555555553 24 57899999888764322233322222111011111224455566667755 566688999
Q ss_pred hHHHHHHHHHHCCCCcee
Q 031899 116 RSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~ 133 (151)
.+..-+..|...|++.+.
T Consensus 219 ~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 219 KTPEDARRLARAGADAVL 236 (254)
T ss_dssp SSHHHHHHHCTTT-SEEE
T ss_pred CCHHHHHHHHHCCCCEEE
Confidence 988899999999997543
No 153
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=58.13 E-value=24 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
.+++|++++|.+-..+..++..|.+.|+. ..+|.+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~ 438 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAK 438 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCC
Confidence 57899999999999999999999999994 5667766
No 154
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.72 E-value=21 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++++|++. .+|.....+++.|++.|.++|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 467788875 478888899999999999877643
No 155
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=57.51 E-value=29 Score=30.26 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=32.8
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+.+|+++.|.+-..+..++..|.+.|+. ..+|.+...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~ 475 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNH 475 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcH
Confidence 47899999999999999999999999984 667877754
No 156
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=57.13 E-value=21 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=26.0
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++..|++. ++|..-..++..|++.|-..|+.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 466777774 578888889999999998888754
No 157
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=56.70 E-value=22 Score=24.83 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.++++.+ +|.....++..|++.|.++|+++
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4677888764 67888889999999998887754
No 158
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=56.62 E-value=29 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=16.4
Q ss_pred CeEEEEeCCC--hhHHHHHHHHHHCCCCc
Q 031899 105 DEIIVGCQSG--KRSMMAATDLLNAGFAG 131 (151)
Q Consensus 105 ~~iv~~c~~g--~~a~~~~~~L~~~G~~~ 131 (151)
-+|-|+=.++ ..+.+++..|+..||..
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 3455554444 45667777777777754
No 159
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=55.90 E-value=25 Score=28.75 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
.+.+|||+ +.|...-.+|..|.+.|+.++.++.|.
T Consensus 20 ~~~kIvII-GAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVII-GAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEE-CCchHHHHHHHHHHHhCCceEEEEEec
Confidence 34456665 666677778889999999999999864
No 160
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=55.49 E-value=31 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.0
Q ss_pred CCCeEEEEeCCC-hhHH
Q 031899 103 KHDEIIVGCQSG-KRSM 118 (151)
Q Consensus 103 ~~~~iv~~c~~g-~~a~ 118 (151)
.+.+|++.|..| .|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 367999999987 4554
No 161
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=55.49 E-value=31 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.0
Q ss_pred CCCeEEEEeCCC-hhHH
Q 031899 103 KHDEIIVGCQSG-KRSM 118 (151)
Q Consensus 103 ~~~~iv~~c~~g-~~a~ 118 (151)
.+.+|++.|..| .|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 367999999987 4554
No 162
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=55.35 E-value=37 Score=26.39 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCC-ceeEccccHHHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFAAW 142 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~~W 142 (151)
++.+++++|++-..+..++..|++.|.. .+..+.|.....
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 4567899999999999999999987652 566677765543
No 163
>PRK13530 arsenate reductase; Provisional
Probab=54.79 E-value=29 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.007 Sum_probs=19.9
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccH
Q 031899 105 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 105 ~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+.|+|+|... -||..+...++...-+++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 4677777654 4665555555544323555566665
No 164
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=54.78 E-value=80 Score=22.90 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=20.6
Q ss_pred CCeEEEEeCCChhHHHHH-HHHHHCCCCc
Q 031899 104 HDEIIVGCQSGKRSMMAA-TDLLNAGFAG 131 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~-~~L~~~G~~~ 131 (151)
.+..+++|.+...+.... ...++.||.-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcce
Confidence 578899999988776555 4557789853
No 165
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.69 E-value=39 Score=25.81 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEcc-------ccHHHHHhCC
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDIA-------GGFAAWRQNG 146 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l~-------GG~~~W~~~g 146 (151)
+++.++++. .+|.....+++.|++.|.++++.+. +++.....+|
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~ 253 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCG 253 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCC
Confidence 456788875 4788888999999999998877543 3345555544
No 166
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=54.63 E-value=16 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=22.5
Q ss_pred EEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 108 IVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
|++.++|.-+.++.+.++++|++-|.++.
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 56678888899999999999997665553
No 167
>PRK06148 hypothetical protein; Provisional
Probab=54.63 E-value=24 Score=31.57 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=31.5
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHHh
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~~ 144 (151)
++.+-..+++|++|..|..+|-.|.+. |-+++..+.|||.+|..
T Consensus 676 ~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 676 LPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 444445789999998888777766543 55567778888887753
No 168
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.48 E-value=48 Score=26.72 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCCCeEEEEeCCC----------hhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+|++..+..-.-.+.||++..+. ..+..+|.++++.|. +|-.+-.++..|..+
T Consensus 206 EFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~-~VLL~mDSlTRfA~A 268 (441)
T COG1157 206 EFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGK-RVLLIMDSLTRFAMA 268 (441)
T ss_pred HHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCC-eEEEEeecHHHHHHH
Confidence 44444444333456666665543 234567889999996 788888888888654
No 169
>PRK09694 helicase Cas3; Provisional
Probab=53.96 E-value=42 Score=29.72 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCC--CceeEccccHH
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGF--AGITDIAGGFA 140 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~--~~v~~l~GG~~ 140 (151)
..++.+...+..+..++++|++-.++..++..|++.+. .++..+.+.+.
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 44555555556678899999999999999999998753 25888888764
No 170
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=53.93 E-value=24 Score=31.51 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCeEEEEeCCChhHHHHHHHH-HHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDL-LNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L-~~~G~~~v~~l~GG~~ 140 (151)
..++||+|++...+..++..| ...|+ ++..+.||++
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi-~~~~ihG~~s 529 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGI-RAAVFHEGMS 529 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCe-eEEEEECCCC
Confidence 668999999998898999999 46798 5778899875
No 171
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=53.93 E-value=25 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=27.7
Q ss_pred EEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 108 IVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
|++++.|.-...++..|...|+.++.++|...-..
T Consensus 5 v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 5 VLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp EEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred EEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 45568887888899999999999999998875433
No 172
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=53.77 E-value=37 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
...++++|+|++-..+..++..|.+.|+. +.+|.|....
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~ 460 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAA 460 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChH
Confidence 46789999999988899999999999994 6678776653
No 173
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=53.77 E-value=25 Score=28.62 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=29.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEccc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
++++|+++++ +|..+..+++.|++.|.+.|++.-.
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 4678998886 5888889999999999998887644
No 174
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=53.76 E-value=38 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCCceeEcccc
Q 031899 117 SMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG 138 (151)
+..+...|.+.|+ ++++|||-
T Consensus 40 A~ale~~L~~~G~-~~y~LDGD 60 (197)
T COG0529 40 ANALEEKLFAKGY-HVYLLDGD 60 (197)
T ss_pred HHHHHHHHHHcCC-eEEEecCh
Confidence 5567788999998 79999984
No 175
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=53.73 E-value=29 Score=26.76 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++++|++. .+|..-..+++.|++.|...|+.+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 251 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAY 251 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEE
Confidence 456788875 578888899999999999887743
No 176
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=53.68 E-value=24 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.2
Q ss_pred CeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 105 DEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 105 ~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++|+++++ +|.....+++.|++.|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56888876 68888899999999999888765
No 177
>PRK06917 hypothetical protein; Provisional
Probab=53.36 E-value=37 Score=27.33 Aligned_cols=49 Identities=12% Similarity=-0.007 Sum_probs=30.5
Q ss_pred HHHHhccCCCCeEEEEeCCChhHHHHHHHHHH-----CCC---CceeEccccHHHHH
Q 031899 95 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 143 (151)
Q Consensus 95 ~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 143 (151)
+.+...++.....+++|++|..|..+|-.|.. .|+ ..|..+.|||.+|.
T Consensus 81 e~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 81 KKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 33333344443568899999887776666542 344 24666778887764
No 178
>PRK11595 DNA utilization protein GntX; Provisional
Probab=53.34 E-value=29 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
.++.|+++++ +|.....++..|++.|...|+++
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4667888875 78888899999999999888764
No 179
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=53.25 E-value=21 Score=25.17 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=24.1
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHCCCCceeEc
Q 031899 105 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 105 ~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l 135 (151)
-.+.+.|.+. .||..+-..|+..|+ +|..+
T Consensus 6 l~~avvC~sN~NRSMeaH~~L~~~G~-~v~S~ 36 (195)
T KOG2424|consen 6 LRVAVVCASNQNRSMEAHNILKKKGL-NVRSF 36 (195)
T ss_pred ceeeeeehhcccchHHHHHHHHHcCC-cceee
Confidence 3566778876 799999999999999 56655
No 180
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=53.19 E-value=31 Score=27.06 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=24.9
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
++++.+|++....|..|+.++..|++.|++
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 355678888888889999999999999985
No 181
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=53.17 E-value=32 Score=26.49 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 104 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 104 ~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++.+|++++ +|..-..++..|++.|-++|+..
T Consensus 214 gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~ 248 (314)
T COG0462 214 GKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAA 248 (314)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEE
Confidence 556777765 68888899999999999988753
No 182
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=53.15 E-value=20 Score=20.57 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=14.9
Q ss_pred eEEEEeCCC-hhHHHHHHHH----HHCCC
Q 031899 106 EIIVGCQSG-KRSMMAATDL----LNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g-~~a~~~~~~L----~~~G~ 129 (151)
+++++|++| ..+..+...| .+.++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~ 29 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGI 29 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCC
Confidence 378999998 4455455544 44555
No 183
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=53.00 E-value=27 Score=28.70 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=28.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++.|+++++ +|.....+++.|++.|.+.|+++.
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEE
Confidence 4678998886 588888899999999999888654
No 184
>PTZ00424 helicase 45; Provisional
Probab=52.95 E-value=26 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...+++||++-..+..++..|...|+ .+..+.|++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 45688999998888899999999998 5888888864
No 185
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.70 E-value=24 Score=28.50 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
..++++||++-..+..++..|...|+ .+..+.|++..
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~~ 371 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVPQ 371 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCH
Confidence 45799999998888899999999998 57778887643
No 186
>COG1204 Superfamily II helicase [General function prediction only]
Probab=52.68 E-value=67 Score=28.01 Aligned_cols=85 Identities=15% Similarity=-0.039 Sum_probs=55.3
Q ss_pred ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHH
Q 031899 41 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 120 (151)
Q Consensus 41 ~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~ 120 (151)
.-...++.++++.+...-|.|+-..+..-...+++...-..........+...+......+..+..++++|.+-..+...
T Consensus 190 lpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 190 LPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred cCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHH
Confidence 34677788888777557788887777766666655443321111111223344555555677888999999998888888
Q ss_pred HHHHH
Q 031899 121 ATDLL 125 (151)
Q Consensus 121 ~~~L~ 125 (151)
|..|.
T Consensus 270 A~~l~ 274 (766)
T COG1204 270 AKKLR 274 (766)
T ss_pred HHHHH
Confidence 88777
No 187
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=51.84 E-value=43 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=29.3
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
++......+.++..++++..+......+...|++.||....+-..|
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 4444445566777666655444446778899999999654444444
No 188
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=51.82 E-value=1e+02 Score=23.35 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCccccCHHHHHHHHhCCCEEE-ecCChhhHhcCCC-CCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC
Q 031899 37 GVPTSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHA-TGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 114 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~~~~ii-DvR~~~e~~~ghI-pgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 114 (151)
+.+..||...+..+.+.++++. |.|...... .|+ ++..-+++. .....+....+...+..++.|++.|+.|
T Consensus 22 Gn~edITlRAl~~L~~aDvI~~edtr~t~~ll-~~~~i~~~~~~~~------~~~~~~~~~~i~~~l~~G~~ValvSdaG 94 (287)
T PRK14994 22 GNLADITQRALEVLQAVDLIAAEDTRHTGLLL-QHFAINARLFALH------DHNEQQKAETLLAKLQEGQNIALVSDAG 94 (287)
T ss_pred CChHHhhHHHHHHHHhCCEEEEeCCcchHHHH-hhcCCCCEEEEcc------CCCHHHHHHHHHHHHHCCCeEEEEccCC
Confidence 3456788888888877776554 666443222 222 122222221 1112344555555666778888887555
Q ss_pred -----hhHHHHHHHHHHCCCCceeEcccc---HHHHHhCCCCC
Q 031899 115 -----KRSMMAATDLLNAGFAGITDIAGG---FAAWRQNGLPT 149 (151)
Q Consensus 115 -----~~a~~~~~~L~~~G~~~v~~l~GG---~~~W~~~g~pv 149 (151)
.........+++.|+ +|.++.|- ..+....|+|.
T Consensus 95 dP~I~dpg~~Lv~~~~~~gi-~v~vIPGiSA~~aA~a~sG~~~ 136 (287)
T PRK14994 95 TPLINDPGYHLVRTCREAGI-RVVPLPGPCAAITALSAAGLPS 136 (287)
T ss_pred CCceeCCHHHHHHHHHHCCC-CEEEeCCHHHHHHHHHHcCCCC
Confidence 345567788888899 58888764 23455557664
No 189
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=51.61 E-value=22 Score=23.81 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 105 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 105 ~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
++|+|+|... -||..+...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 3577777654 466666666665432 355555555444
No 190
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=51.61 E-value=38 Score=29.97 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
..++||+|.|.+-..+..++..|...|+ ...+|.+....
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi-~~~vLnak~~~ 485 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKI-PHEVLNAKFHE 485 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCC-CeEeccCcccH
Confidence 5789999999999999999999999999 46678776544
No 191
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=50.68 E-value=46 Score=18.92 Aligned_cols=38 Identities=5% Similarity=-0.071 Sum_probs=29.3
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.+...+..++.+..+.+.++.......+..+++..||+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~ 53 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYE 53 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 45556667788888888888877777889999999995
No 192
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=50.59 E-value=32 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=24.4
Q ss_pred CCeEEEEeCCChhHHHHHHHH-HHCCC--C--ceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDL-LNAGF--A--GITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L-~~~G~--~--~v~~l~GG~ 139 (151)
...-||+|+||..|..+|-.| +..++ + .+....++|
T Consensus 99 ~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsF 139 (404)
T COG4992 99 FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSF 139 (404)
T ss_pred cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc
Confidence 466799999999988888766 44443 2 344455555
No 193
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=50.25 E-value=18 Score=30.00 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCCceeeccccccCCC---------CCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCcee
Q 031899 71 ATGAINVPYMYRVGSG---------MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 71 IpgAi~ip~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~ 133 (151)
.|||.+-|+.-..... -.++..|+.-=+. ...++||.++|.||.-++...=...+.++.+|-
T Consensus 29 cPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlA-Kas~rPVavi~TSGTA~ANl~PAViEA~~srvp 99 (566)
T COG1165 29 CPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLA-KASKRPVAVICTSGTAVANLYPAVIEANLSRVP 99 (566)
T ss_pred CCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhh-hhcCCCEEEEEcCcchhhhccHHHHhhhhcCCc
Confidence 5888888874322111 1123333333222 245789999999998777766666676666544
No 194
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=50.05 E-value=63 Score=22.48 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=33.4
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc---ccHHHHHhCCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 150 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~pv~ 150 (151)
+.++++++++.+ +|.....+...|++.|.+-+. +++ ||-+.-...|+|+.
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~ 162 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELE 162 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEE
Confidence 457889999875 788888899999999975322 222 33333344677763
No 195
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=49.98 E-value=51 Score=20.35 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCcee
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~ 133 (151)
+-+|++-|..|..+..+-..|+++|.+.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~~ 50 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVIE 50 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEEE
Confidence 447899999999998999999999985333
No 196
>PRK10126 tyrosine phosphatase; Provisional
Probab=49.84 E-value=23 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=19.2
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHH
Q 031899 105 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 105 ~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+|+|+|... -||..|...|+..+- .+.+...|..
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~ 38 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLG 38 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeecc
Confidence 3577777654 466666666665542 3444444543
No 197
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=49.83 E-value=28 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.+.||++. + ..-.......|+..+.++++++ ||-
T Consensus 49 ~~~PIll~-~-~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLV-N-NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEE-C-CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 45666654 4 4344678888888898888877 654
No 198
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=49.71 E-value=1.2e+02 Score=23.63 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=51.0
Q ss_pred cCHHHHHHHHh----CC-CEEEecCChhhHhcC-CCCCceeeccccccCCCCCCCHHHHHHHHh-----ccCCCCeEEEE
Q 031899 42 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEIIVG 110 (151)
Q Consensus 42 i~~~~~~~~~~----~~-~~iiDvR~~~e~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv~~ 110 (151)
++.+++.++.+ =+ -.||-|.+..|.... .+.|+.-|-.+...-...-.+.+....+.. .+++ +.++++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~-~~~~~V 292 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIRE-KGIIVV 292 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCC-CCeEEE
Confidence 34444444443 24 678999999988632 233554343322111111112233344444 3432 346778
Q ss_pred eCCChhHHHHHHHHHHCCCCce
Q 031899 111 CQSGKRSMMAATDLLNAGFAGI 132 (151)
Q Consensus 111 c~~g~~a~~~~~~L~~~G~~~v 132 (151)
+.+|..+..-...|+..|++-|
T Consensus 293 sESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEE
Confidence 8999988888899999999644
No 199
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.44 E-value=25 Score=20.90 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=14.7
Q ss_pred eEEEEeCCChh-HHHHH----HHHHHCCC
Q 031899 106 EIIVGCQSGKR-SMMAA----TDLLNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g~~-a~~~~----~~L~~~G~ 129 (151)
+++++|++|.. |..+. +.+.+.|+
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i 29 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGI 29 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 37899999954 33333 34455665
No 200
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=49.24 E-value=34 Score=21.29 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=18.6
Q ss_pred CeEEEEeCCChhHHH-----HHHHHHHCCCC
Q 031899 105 DEIIVGCQSGKRSMM-----AATDLLNAGFA 130 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~-----~~~~L~~~G~~ 130 (151)
.+|++.|+.|..++. +-..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 468999999954432 44578889994
No 201
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=49.21 E-value=87 Score=21.82 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=56.6
Q ss_pred CccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHH--HhccCCCCeEEEEeCCC-
Q 031899 38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSG- 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iv~~c~~g- 114 (151)
.+..+|.+.+..+.+.++++.+-|....+.. +++. ..|.............+..+.. ......++.|++.+...
T Consensus 11 ~~~~lT~~a~~~l~~advv~~~~r~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~V~~l~~GDP 87 (210)
T PF00590_consen 11 DPDLLTLRALEALKNADVVIGPERALEIVRD-LLPE--IFPMGKDRESLEESYDEIAEIIEAIEAAKEGKDVVVLVSGDP 87 (210)
T ss_dssp SGGGSBHHHHHHHHHSSEEEEETTCHHHHHH-HHHT--EETTSSEEEEEHHHHHHHHHHHHHHHHHHTTSEEEEEESBST
T ss_pred CHHHHHHHHHHHHHhCCcccccccchHHHHh-hccc--cccccccccchhhhhhHHHHHHHHHHHHhccCCEEEeCCCCC
Confidence 4567889988888888999999986555542 2211 1111000000000001222222 33345567777777432
Q ss_pred ---hhHHHHHHHHHH--CCCCceeEccc--cHH-HHHhCCCCCC
Q 031899 115 ---KRSMMAATDLLN--AGFAGITDIAG--GFA-AWRQNGLPTE 150 (151)
Q Consensus 115 ---~~a~~~~~~L~~--~G~~~v~~l~G--G~~-~W~~~g~pv~ 150 (151)
.........+.+ .|+ ++.++.| .+. +....|.|+.
T Consensus 88 ~~~~~~~~l~~~l~~~~~gi-~v~iiPGiSs~~~a~a~~g~~~~ 130 (210)
T PF00590_consen 88 LFFSTGSYLVRALRAEERGI-EVEIIPGISSFQAAAARLGIPLT 130 (210)
T ss_dssp TSSSSHHHHHHHHHHHHTTC-EEEEE--TTHHHHHHHHCTSTSS
T ss_pred CcccHHHHHHHHHHhhcCCC-ceEEEecCcHHHHHHHHHcCCcc
Confidence 345567777877 898 5777776 122 3344566653
No 202
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.68 E-value=32 Score=26.56 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.+|+++ ++|.....+++.|++.|.+.|+.+
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 252 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAV 252 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 467788875 478888899999999999887743
No 203
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=48.55 E-value=27 Score=24.13 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=24.8
Q ss_pred CCeEEEEeCCC-hhHHHHHHHHHHCCCCceeEc
Q 031899 104 HDEIIVGCQSG-KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 104 ~~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l 135 (151)
+-++-+.|.+. .||..+-..|++.|| +|..+
T Consensus 6 nlk~~v~CAsNqNRSMetH~vL~~aGy-~V~Sf 37 (197)
T COG5211 6 NLKLAVTCASNQNRSMETHDVLAKAGY-PVKSF 37 (197)
T ss_pred CceEEeeeccCCCcchHHHHHHHHcCC-ccccc
Confidence 44577788865 799999999999999 56655
No 204
>PRK05922 type III secretion system ATPase; Validated
Probab=48.54 E-value=84 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=34.4
Q ss_pred HHHHHHHhccCCCCeEEEEeCCC----------hhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+++++.......++.++|+..+. ..+..+|.++++.|. +|-++-..+..|..+
T Consensus 200 eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~-~VLl~~DslTR~A~A 262 (434)
T PRK05922 200 EYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGH-RVLFIMDSLSRWIAA 262 (434)
T ss_pred HHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHH
Confidence 44545444444556666665443 224457788999996 788888888888765
No 205
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=48.37 E-value=32 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHH
Q 031899 70 HATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 126 (151)
Q Consensus 70 hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~ 126 (151)
.||||.-+-- ..+.+.+++.. ++.+|+|.++|.|....+..|++
T Consensus 249 aIPGAFGCGK------------TVISQsLSKYS-NSD~iiYVGCGERGNEMsEVL~d 292 (618)
T KOG1352|consen 249 AIPGAFGCGK------------TVISQSLSKYS-NSDAIIYVGCGERGNEMSEVLMD 292 (618)
T ss_pred ccCcccccch------------HHHHHHHhhcc-CCCeEEEEcccccchhHHHHHHh
Confidence 4777765544 45555555543 55688898999888888888877
No 206
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.21 E-value=28 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
...+|+||++-..+..++..|...|| .+..+.|.+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~-~~~~lhgd~ 279 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDM 279 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCC-CEEEeeCCC
Confidence 35688999998889999999999999 577888875
No 207
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=48.00 E-value=33 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccccCHHHHHHHHhCC--CEEEecCChhh
Q 031899 39 PTSVPVRVAHELLQAG--HRYLDVRTPEE 65 (151)
Q Consensus 39 ~~~i~~~~~~~~~~~~--~~iiDvR~~~e 65 (151)
...|+-+++.++..++ +.|+|..+-++
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTgeD 45 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGDD 45 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCch
Confidence 3578999999999876 89999998655
No 208
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=47.89 E-value=78 Score=21.62 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCeEEEEeCCC--hhHHHHHHHHHH---CCCCceeEccccHHH
Q 031899 94 VEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAA 141 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g--~~a~~~~~~L~~---~G~~~v~~l~GG~~~ 141 (151)
-+.+...++ +..+|+.+..| ..|...|..|.+ .| .++..+-||-.+
T Consensus 56 ~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G 106 (153)
T TIGR00246 56 GDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEG 106 (153)
T ss_pred HHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCc
Confidence 344555666 46677777777 467788888874 46 478888887543
No 209
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=47.64 E-value=60 Score=22.37 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=34.1
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc----ccHHHHHhC-CCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAWRQN-GLPTE 150 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~----GG~~~W~~~-g~pv~ 150 (151)
+.++++++++.+ +|.....+...|++.|.+-+. +++ ||...+.+. |.|+.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~ 165 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVI 165 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEE
Confidence 456788998875 677788889999999975322 232 455566554 77763
No 210
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=47.57 E-value=54 Score=25.98 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=27.1
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC--------CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~ 143 (151)
.+..-.-+++|++|..+..+|-.|.+. |=++|..+.|||.+|.
T Consensus 98 ~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 98 TPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 443334578899998777666555331 3235667888887664
No 211
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.30 E-value=37 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
++++++++. .+|.....++..|++.|.+.|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYA 250 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE
Confidence 467788885 47888889999999999988774
No 212
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=47.28 E-value=60 Score=22.90 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=34.6
Q ss_pred ccCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc---ccHHHHHhCCCCCC
Q 031899 100 RFRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 150 (151)
Q Consensus 100 ~~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~pv~ 150 (151)
.+.++++|+++.+ +|.....+...+++.|.+-+. +++ ||-+...+.|+|+.
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~ 177 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELV 177 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEE
Confidence 3457889999986 678888888999999975222 232 44445555677753
No 213
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=46.97 E-value=46 Score=26.89 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=29.7
Q ss_pred HHhccCCCCeEEEEeCCChhHHHHHHHHHHC-----CC---CceeEccccHHHHH
Q 031899 97 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAWR 143 (151)
Q Consensus 97 ~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G~---~~v~~l~GG~~~W~ 143 (151)
+.+.++..-.-+++|++|..+..+|-.|.+. |+ +.+..+.|||.+|.
T Consensus 108 L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 108 LIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 3333443334689999998877766665443 43 34667788887764
No 214
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=46.75 E-value=40 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=10.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCC
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
++++++.+..+ ...++..|+
T Consensus 23 ~vvvid~d~~~----~~~~~~~~~ 42 (116)
T PF02254_consen 23 DVVVIDRDPER----VEELREEGV 42 (116)
T ss_dssp EEEEEESSHHH----HHHHHHTTS
T ss_pred EEEEEECCcHH----HHHHHhccc
Confidence 56666554332 445555564
No 215
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=46.55 E-value=40 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 146 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 146 (151)
+..+|.+++++|+ +|.++......|.++.
T Consensus 312 giTiAEYfRd~G~-~Vllm~DStSR~AeAl 340 (586)
T PRK04192 312 GITIAEYYRDMGY-DVLLMADSTSRWAEAL 340 (586)
T ss_pred HHHHHHHHHHCCC-CEEEEecChHHHHHHH
Confidence 3457788999998 7999999999998763
No 216
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=46.23 E-value=34 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=6.7
Q ss_pred HHHHHHHHHCCC
Q 031899 118 MMAATDLLNAGF 129 (151)
Q Consensus 118 ~~~~~~L~~~G~ 129 (151)
..+...|++.|+
T Consensus 41 ~~a~~~l~e~Gi 52 (129)
T TIGR02691 41 PNAVKAMKEVGI 52 (129)
T ss_pred HHHHHHHHHcCC
Confidence 345555666665
No 217
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=46.20 E-value=66 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 148 (151)
....++.|..+|| +++.-.|-.....+.|.+
T Consensus 15 ~~~~a~~l~~~G~-~i~aT~gTa~~L~~~gi~ 45 (116)
T cd01423 15 LLPTAQKLSKLGY-KLYATEGTADFLLENGIP 45 (116)
T ss_pred HHHHHHHHHHCCC-EEEEccHHHHHHHHcCCC
Confidence 4456667777777 455444333333444554
No 218
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=46.14 E-value=1.2e+02 Score=22.51 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=49.5
Q ss_pred cCHHHHHHHHh----CC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899 42 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 116 (151)
Q Consensus 42 i~~~~~~~~~~----~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 116 (151)
.+.+++.++.. -+ -.||.|++..|....---|+.-+-.+...-...-.+.+....+...+|++ +++++.+|..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESGI~ 212 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESGIE 212 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCCCC
Confidence 35555555543 24 57889999988874433344444432211111122334556666667644 4666889987
Q ss_pred HHHHHHHHHHCCCCce
Q 031899 117 SMMAATDLLNAGFAGI 132 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v 132 (151)
+..-...++.. ++-+
T Consensus 213 t~~d~~~l~~~-~dav 227 (247)
T PRK13957 213 SRSDLDKFRKL-VDAA 227 (247)
T ss_pred CHHHHHHHHHh-CCEE
Confidence 76666667665 6543
No 219
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=46.13 E-value=49 Score=29.09 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
.+.+|++|+|.+-..+..++..|.+.|+. ..+|.+.
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLnak 463 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNAK 463 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccCc
Confidence 56789999999999999999999999994 6677765
No 220
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=46.09 E-value=33 Score=20.53 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=15.6
Q ss_pred eEEEEeCCChhHH-HHH----HHHHHCCC
Q 031899 106 EIIVGCQSGKRSM-MAA----TDLLNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g~~a~-~~~----~~L~~~G~ 129 (151)
+++++|++|..++ .+. +.+.+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 6899999996443 333 44555666
No 221
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=46.08 E-value=40 Score=29.06 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=29.2
Q ss_pred CCCCeEEEEeCCC----hhHHHHHHHHHHCCCCceeEccccH
Q 031899 102 RKHDEIIVGCQSG----KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 102 ~~~~~iv~~c~~g----~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
..+..+|++|... .....++..|++.|.+++.++-||.
T Consensus 631 ~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 631 ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 3466789999754 3456788899999988898888874
No 222
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=45.96 E-value=34 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=28.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++|+++++ +|..+..+++.|++.|.+.|++.-
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999887 577888899999999999887654
No 223
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.60 E-value=38 Score=26.49 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=26.2
Q ss_pred HHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 95 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 95 ~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
..++..+.-++ -|++|++-.|....|....++||.
T Consensus 314 ntLfskLqINQ-sIIFCNS~~rVELLAkKITelGys 348 (459)
T KOG0326|consen 314 NTLFSKLQINQ-SIIFCNSTNRVELLAKKITELGYS 348 (459)
T ss_pred HHHHHHhcccc-eEEEeccchHhHHHHHHHHhccch
Confidence 33444444444 467799999999999999999984
No 224
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=45.47 E-value=45 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=28.2
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.+..-.-|++|++|..+..+|-.|.+ -|=+.|..+.|||.+|.
T Consensus 109 ~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 109 SPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred CCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 44332467889999888777766654 24345666778887764
No 225
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=45.29 E-value=39 Score=19.76 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=15.5
Q ss_pred eEEEEeCCChh-HHHHHHHHHHC
Q 031899 106 EIIVGCQSGKR-SMMAATDLLNA 127 (151)
Q Consensus 106 ~iv~~c~~g~~-a~~~~~~L~~~ 127 (151)
+++++|++|.. +..++..|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58899999965 44566667653
No 226
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.06 E-value=60 Score=18.64 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.....++.+..+..+.+.++.......+-.+++..||+
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~ 52 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYK 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCE
Confidence 34556667777888888888877777788889999995
No 227
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=44.86 E-value=42 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++|+++++ +|.....+++.|++.|.+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5788999886 58888899999999999877654
No 228
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=44.78 E-value=38 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++|+++++ +|.....+++.|++.|.+.|++.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~ 368 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVR 368 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEE
Confidence 5688999886 57888889999999999877754
No 229
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=21 Score=28.49 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=28.3
Q ss_pred eEEEEeCCChh----------HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 106 EIIVGCQSGKR----------SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 106 ~iv~~c~~g~~----------a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
++.+||+-.-. .......|+++|+ ++.+|-||+.+|...
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh-~~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGH-KPIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCC-eEEEEecccceecCC
Confidence 88899873211 2234456788999 688999999998765
No 230
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=44.47 E-value=39 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=21.6
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHH
Q 031899 105 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 105 ~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
.+|+|+|... -||..|-..++...-.++.+...|..
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~ 39 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTG 39 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccC
Confidence 3577777654 46665555665543356777666643
No 231
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=44.43 E-value=47 Score=26.64 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHhccCCCCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 95 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 95 ~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
+.+.+.++....-|++|++|..+..+|-.|.+. |=..+..+.|||.+|.
T Consensus 100 ~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 100 EELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 333333443324578899998888777666442 5445666788888775
No 232
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=44.36 E-value=43 Score=19.43 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLN 126 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~ 126 (151)
..+..|++.|.++..+......|++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4678899999999988888888765
No 233
>PRK10637 cysG siroheme synthase; Provisional
Probab=43.93 E-value=1.7e+02 Score=23.64 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=55.1
Q ss_pred CccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC---
Q 031899 38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--- 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g--- 114 (151)
.+..+|..-+..+.+.++++.|.|...++..---+.+..+..............+..+.+......++.|++.|.+.
T Consensus 227 dp~lLTl~A~~~L~~ADvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Vv~L~sGDP~~ 306 (457)
T PRK10637 227 DAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKGGDPFI 306 (457)
T ss_pred ChHHHHHHHHHHHHcCCEEEECCCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCccc
Confidence 34567777777777788888898876655321111221111100000000011122233333445566777776432
Q ss_pred -hhHHHHHHHHHHCCCCceeEccccHHHH----HhCCCCC
Q 031899 115 -KRSMMAATDLLNAGFAGITDIAGGFAAW----RQNGLPT 149 (151)
Q Consensus 115 -~~a~~~~~~L~~~G~~~v~~l~GG~~~W----~~~g~pv 149 (151)
.........+...|+ .+.++.| +.+. ...|.|+
T Consensus 307 yg~~~~l~~~l~~~gi-~vevVPG-ISS~~aAaA~~g~pl 344 (457)
T PRK10637 307 FGRGGEELETLCNAGI-PFSVVPG-ITAASGCSAYSGIPL 344 (457)
T ss_pred cccHHHHHHHHHhCCC-CEEEECC-HhHHHHHHHHcCCCc
Confidence 234455667777787 5777775 4433 3346665
No 234
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=43.89 E-value=37 Score=21.56 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=15.6
Q ss_pred CeEEEEeCCChhHHHHHHHHH
Q 031899 105 DEIIVGCQSGKRSMMAATDLL 125 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~ 125 (151)
++|.++|+.|..+...+...+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~ 22 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMK 22 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHH
Confidence 468999999977666665544
No 235
>PRK07481 hypothetical protein; Provisional
Probab=43.76 E-value=48 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=26.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHC--------CCCceeEccccHHHHHh
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~~ 144 (151)
-.-+++|++|..|..+|-.|.+. |=..+..+.|||.+|..
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 34688899998777666655432 22346678888888754
No 236
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=43.61 E-value=41 Score=27.50 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=27.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++|+++++ +|.....++..|++.|.+.|++--
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri 391 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRI 391 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4678888887 477888899999999998877543
No 237
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=43.57 E-value=85 Score=22.06 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=33.2
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc----ccHHHHHh-CCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAWRQ-NGLPT 149 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~----GG~~~W~~-~g~pv 149 (151)
+.++++++++.+ +|.....+...+++.|-.-+. +++ ||.....+ .|.|+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v 170 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINV 170 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcE
Confidence 457888999886 677777888899999975322 232 55666533 57765
No 238
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=43.25 E-value=52 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+...|.+++++|+ +|.++...+..|.++
T Consensus 242 a~tiAEYfrd~G~-dVll~~Ds~tR~A~A 269 (369)
T cd01134 242 GITIAEYFRDMGY-NVALMADSTSRWAEA 269 (369)
T ss_pred HHHHHHHHHHcCC-CEEEEEcChhHHHHH
Confidence 3457788999997 788888889999775
No 239
>PRK05965 hypothetical protein; Provisional
Probab=43.24 E-value=63 Score=26.12 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHhccCCCCeEEEEeCCChhHHHHHHHHHH-----CCC---CceeEccccHHHHH
Q 031899 96 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 143 (151)
Q Consensus 96 ~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 143 (151)
.+.+..+.+-.-|++|++|..|..+|-.|.+ .|. +.+..+.+||.+|.
T Consensus 98 ~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 98 KLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3333344444568889999777766655532 242 34667788887774
No 240
>PRK08297 L-lysine aminotransferase; Provisional
Probab=43.23 E-value=62 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHH---------CCC-----CceeEccccHHHHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLN---------AGF-----AGITDIAGGFAAWR 143 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~---------~G~-----~~v~~l~GG~~~W~ 143 (151)
++-.-|++|++|..+..+|-.|.. .|. ..+..+.|||.+|.
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t 162 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRS 162 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcc
Confidence 444568899999887776665542 354 34667788887664
No 241
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=42.71 E-value=41 Score=26.54 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.7
Q ss_pred CeEEEEeCC--C----hhHHHHHHHHHHC--CCCceeEccccH
Q 031899 105 DEIIVGCQS--G----KRSMMAATDLLNA--GFAGITDIAGGF 139 (151)
Q Consensus 105 ~~iv~~c~~--g----~~a~~~~~~L~~~--G~~~v~~l~GG~ 139 (151)
.+|++||.. | .|+..+|..|.+- |+ +|.++.||-
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~-~Il~IsG~~ 51 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGF-DILIISGGP 51 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCc-eEEEEeCCC
Confidence 479999974 3 6888999999876 98 699999874
No 242
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=42.64 E-value=74 Score=21.94 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc---ccHHHHHhCCCCCC
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 150 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~pv~ 150 (151)
++++++++.+ +|.....+...|++.|-+-+. +++ |+-+.....|.|+.
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~ 159 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLT 159 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEE
Confidence 5788888875 788888899999999975322 333 32333344677753
No 243
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.50 E-value=51 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.++++.+ +|.....++..|++.|-+.|+.+
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 252 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVM 252 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEE
Confidence 4667888864 78888899999999999877743
No 244
>PRK11018 hypothetical protein; Provisional
Probab=42.49 E-value=73 Score=18.87 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.....+..++.+..+.+.++.......+..+++..||+
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYT 61 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCE
Confidence 34555667777888888888777777788899999995
No 245
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=42.49 E-value=54 Score=20.99 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=20.7
Q ss_pred CCCeEEEEeCCC--hhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGCQSG--KRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c~~g--~~a~~~~~~L~~~G~~~v~~ 134 (151)
++..+.++|-.. ..+..++..|++.|++ +.+
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~-~~v 40 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIK-AGV 40 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCc-eeE
Confidence 445555555443 5677899999999983 443
No 246
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=42.26 E-value=47 Score=27.04 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++||++++ +|.....++..|++.|-+.|++..
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~ 388 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRV 388 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 4678888876 477788899999999998887653
No 247
>PRK06062 hypothetical protein; Provisional
Probab=42.09 E-value=53 Score=26.48 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=28.4
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-|++|++|..+..+|-.|.+. |-..+..+.|||.+|.
T Consensus 108 ~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 108 APGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 343334588899998887777666442 5445666788877663
No 248
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=42.07 E-value=78 Score=22.31 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
..++......+.++..+++.+............+++.|+ .+.+.++|+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 183 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG-FLVSEAGDY 183 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc-cccccchhh
Confidence 466777777788888888877766666678888888897 455555543
No 249
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=41.81 E-value=61 Score=26.02 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=26.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-|++|++|..+..+|-.|.+. |=..|..+.|||.+|.
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 155 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRT 155 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccc
Confidence 3688999998877777666442 4445667788887764
No 250
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=41.62 E-value=57 Score=26.23 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=26.8
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC--------CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-|++|++|..|..+|-.|... |=.++..+.|||.+|.
T Consensus 102 ~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 102 APGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 343334678899998777666555331 2235667788887764
No 251
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.18 E-value=54 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++++++.+ +|.....+++.|++.|-..++..
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 238 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVA 238 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEE
Confidence 4677888854 78888889999999998776643
No 252
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=41.15 E-value=56 Score=26.61 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=28.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-|.+|++|..+..+|-.|.+. |=+.+..+.|+|.+|.
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 4688899998888877766543 5455667788888875
No 253
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=41.02 E-value=67 Score=25.73 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=26.8
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-------CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-------GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-------G~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-|++|++|..+..+|-.|... |-.++..+.|||.++.
T Consensus 99 ~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 443334688899998777666555332 3335666788776653
No 254
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=40.98 E-value=48 Score=26.80 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=27.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++|+++++ +|.....+++.|++.|.+.|++.
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~ 374 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLR 374 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEE
Confidence 4778888886 57778789999999999888765
No 255
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=40.66 E-value=1.1e+02 Score=21.70 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=34.1
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCc--ee-Ecc----ccHHHHHhCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAG--IT-DIA----GGFAAWRQNGLPT 149 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~--v~-~l~----GG~~~W~~~g~pv 149 (151)
++++++|+++.+ +|.....+.+.+++.|.+- +. +++ ||-....+.|.|+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv 172 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRV 172 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcE
Confidence 467889999886 6788888889999999752 22 232 4555555567775
No 256
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=40.21 E-value=95 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc-eeEccc
Q 031899 96 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAG 137 (151)
Q Consensus 96 ~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~-v~~l~G 137 (151)
++...++.+.+++.+.....++..|...+++.|+.+ +..+.|
T Consensus 76 ~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~ 118 (219)
T COG4122 76 WMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118 (219)
T ss_pred HHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence 344456666677766667788888999999999976 555553
No 257
>PRK07482 hypothetical protein; Provisional
Probab=40.20 E-value=70 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=27.9
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHH-----CCCC---ceeEccccHHHHH
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGFA---GITDIAGGFAAWR 143 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G~~---~v~~l~GG~~~W~ 143 (151)
...+.+-.-++||++|..|..+|-.+.+ .|.+ +|..+.|||.+|.
T Consensus 105 ~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 105 DRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 3344333467889999777766655543 2542 3666778887764
No 258
>PRK07678 aminotransferase; Validated
Probab=39.97 E-value=55 Score=26.37 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=24.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHC-----C---CCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 143 (151)
.-|++|++|..|..+|-.|.+. | =+.|..+.|||.+|.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t 151 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNS 151 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 3688899998777666555332 3 234666788887764
No 259
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=39.89 E-value=58 Score=26.39 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=27.1
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G~~~v~~l~GG~~~W~ 143 (151)
.+.+-..+++|++|..+..+|-.|.+. |=..+..+.|||.+|.
T Consensus 137 ~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t 184 (459)
T PRK11522 137 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS 184 (459)
T ss_pred CCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCc
Confidence 444345688899998877766655432 2224666778877664
No 260
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=39.68 E-value=1.7e+02 Score=22.54 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=18.0
Q ss_pred HHHHHHHhC-CCEEEecCChhhHhcCCCCCc
Q 031899 45 RVAHELLQA-GHRYLDVRTPEEFSAGHATGA 74 (151)
Q Consensus 45 ~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgA 74 (151)
++.++++.. +.+|.|+-.--.....-|||+
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs 43 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS 43 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh
Confidence 455566654 477888876544444556665
No 261
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=39.67 E-value=63 Score=22.11 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=25.1
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee
Q 031899 102 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 102 ~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~ 133 (151)
.+++.|+++.+ +|.....++..|++.|.+.+.
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~ 141 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEE
Confidence 36788888875 677888899999999986443
No 262
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=39.50 E-value=61 Score=26.05 Aligned_cols=47 Identities=9% Similarity=-0.067 Sum_probs=29.2
Q ss_pred HHhccCCCCeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 97 VSTRFRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 97 ~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
+....+..-.-|++|++|..+..+|-.|.+ -|-+.+..+.|||.+|.
T Consensus 93 L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 93 LIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 333344332458889999888877766644 25445666777776653
No 263
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=39.46 E-value=92 Score=22.34 Aligned_cols=44 Identities=7% Similarity=-0.014 Sum_probs=25.7
Q ss_pred HHHHHHHhcc---CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 92 KFVEEVSTRF---RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 92 ~~~~~~~~~~---~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
..+......+ +..+-+++-|+.|..+. .|.+.|+ +|.-++-.-.
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~----~LA~~G~-~V~gvD~S~~ 67 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLA----WLAEQGH-RVLGVELSEI 67 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHH----HHHhCCC-eEEEEeCCHH
Confidence 3444554443 33456777788886554 3446788 5776665433
No 264
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=39.33 E-value=58 Score=26.16 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-|++|++|..+..+|-.|.+. |=+.+..++|+|.+|.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4688899998887777666432 5445667788887764
No 265
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=39.06 E-value=71 Score=22.17 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=23.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCcee
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~ 133 (151)
++++|+++.+ +|.....+++.|++.|-+.+.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 4678888875 677788888999999976444
No 266
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.88 E-value=57 Score=25.36 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
..||+.-.+|..|+.+|..|+..||.
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~ 31 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYN 31 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCC
Confidence 45666667889999999999999994
No 267
>PRK06149 hypothetical protein; Provisional
Probab=38.78 E-value=58 Score=29.11 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=29.8
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
++.+...+++|++|..|..+|-.|.+ .|-+.+..+++||.+|.
T Consensus 637 ~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 637 APDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 44444578889999888777666543 36556777888888765
No 268
>PRK07483 hypothetical protein; Provisional
Probab=38.77 E-value=78 Score=25.44 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=26.1
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH-----CC---CCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN-----AG---FAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G---~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-++||++|..|..+|-.|.+ .| -.++..+.++|.+|.
T Consensus 86 ~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 86 APAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred CCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 34333467889999777766655433 23 224666678887764
No 269
>PRK06541 hypothetical protein; Provisional
Probab=38.65 E-value=68 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=26.7
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----C---CCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-|++|++|..+..+|-.|... | =..+..+.|||.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 158 (460)
T PRK06541 108 APGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTT 158 (460)
T ss_pred CCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcc
Confidence 333334578899998877766555332 3 234666778877664
No 270
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=38.58 E-value=1.1e+02 Score=19.66 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=24.2
Q ss_pred HHHHHHhccCCCCeEEEEeCC-ChhHHHHHHHHHHCCCCceeEccc
Q 031899 93 FVEEVSTRFRKHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~-g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.+.+....++.++.++++|+- |..-..++..+.... .+++++.|
T Consensus 46 ~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 46 KIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 344445556666778888874 433334444444332 46766654
No 271
>PRK15043 transcriptional regulator MirA; Provisional
Probab=38.57 E-value=1.1e+02 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEccccH
Q 031899 102 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 102 ~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.+.+++++.|-.+ .+....|..|...|+ +|.+|..+.
T Consensus 160 ~~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~-~v~vl~~~~ 199 (243)
T PRK15043 160 KQGKDALVVGWNIHDTTRLWLEGWIASQQGW-RIDVLAHSL 199 (243)
T ss_pred cCCCCEEEEeCCCCCcHHHHHHHHHHhcCCc-eEEEeCCcc
Confidence 3456788887654 456667788889999 688887665
No 272
>PRK09401 reverse gyrase; Reviewed
Probab=38.53 E-value=77 Score=29.11 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHhccCCCCeEEEEeCCChh---HHHHHHHHHHCCCCceeEccccH
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKR---SMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~---a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+..+...+. ...+|||++... +..++..|+..|+ ++..+.|++
T Consensus 320 L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi-~v~~~hg~l 365 (1176)
T PRK09401 320 LVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGI-NAELAISGF 365 (1176)
T ss_pred HHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCC-cEEEEeCcH
Confidence 334444443 467888988665 8899999999999 577888886
No 273
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=38.52 E-value=49 Score=22.74 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++|+|+ ++|..+..++..|.+.| ++|.++.
T Consensus 166 ~~k~V~VV-G~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVV-GGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred CCCcEEEE-cChHHHHHHHHHHHhhC-CEEEEEe
Confidence 35666665 77889999999999999 6787653
No 274
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=38.44 E-value=47 Score=29.65 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=33.4
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...-++...|+||-+-.....++..|+..|. ....|..|+.
T Consensus 480 ~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~-~a~~YHAGl~ 520 (941)
T KOG0351|consen 480 KLRHPDQSGIIYCLSRKECEQVSAVLRSLGK-SAAFYHAGLP 520 (941)
T ss_pred hhcCCCCCeEEEeCCcchHHHHHHHHHHhch-hhHhhhcCCC
Confidence 3345788999999998889999999999996 5667777773
No 275
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=38.35 E-value=67 Score=25.84 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=28.2
Q ss_pred HhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 98 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 98 ~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+..+.+++||++...++..+..-...|+..|++
T Consensus 106 LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 106 LDAVSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred HhcccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 455668999999999999888888899999985
No 276
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=38.30 E-value=83 Score=18.32 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCCeEEEEeCCC-hhHHHHHHHHHHCCCC
Q 031899 103 KHDEIIVGCQSG-KRSMMAATDLLNAGFA 130 (151)
Q Consensus 103 ~~~~iv~~c~~g-~~a~~~~~~L~~~G~~ 130 (151)
...+|++|..++ ..+..+-..|.+.|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 455688887754 6677777888888875
No 277
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=38.27 E-value=64 Score=26.05 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEccc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
++++|+++++ +|.....++..|++.|.+.|.+.-.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 4678888886 5788888999999999988876543
No 278
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=38.17 E-value=73 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCeEEEEe---CCChhHHHHHHHHHHCCCCceeE
Q 031899 104 HDEIIVGC---QSGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 104 ~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
++.|++.. .+|.....+...|++.|.+++.+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~ 157 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEE
Confidence 45666665 36788888888999999777653
No 279
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=38.10 E-value=72 Score=21.89 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
.++.++++.+ +|.+...++..|++.|..++++
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~ 117 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKI 117 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEE
Confidence 3678888764 7888888999999999877664
No 280
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=38.00 E-value=67 Score=24.50 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++.+|++.+ +|.....++..|++.|..+++++.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 3566777754 677888899999999998877554
No 281
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=37.79 E-value=69 Score=25.90 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=28.3
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.+....-+++|++|..+..+|-.|.. .|-.++..+.++|.+|.
T Consensus 126 ~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 126 AGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 33333468889999888877766654 25445667777776654
No 282
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=37.64 E-value=81 Score=18.04 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
....+..+..+..+.+.++.......+..+.+..||+
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~ 52 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNT 52 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCE
Confidence 4555666777788888888777777788899999995
No 283
>PLN02541 uracil phosphoribosyltransferase
Probab=37.64 E-value=81 Score=23.37 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCeEEEEeC---CChhHHHHHHHHHHCCCC--ceeEc
Q 031899 104 HDEIIVGCQ---SGKRSMMAATDLLNAGFA--GITDI 135 (151)
Q Consensus 104 ~~~iv~~c~---~g~~a~~~~~~L~~~G~~--~v~~l 135 (151)
++.|++++. +|..+..+.+.|++.|.+ ++.++
T Consensus 157 ~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v 193 (244)
T PLN02541 157 GSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVV 193 (244)
T ss_pred CCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEE
Confidence 456777764 688888899999999986 65543
No 284
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=37.63 E-value=1.1e+02 Score=19.56 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHHhccCCCCeEEEEeCC--ChhHHHHHHHHHHCCCCceeEccc
Q 031899 94 VEEVSTRFRKHDEIIVGCQS--GKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~--g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
++.....++.++.+++.++- |.-...+...+.+ +++++++.|
T Consensus 48 l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 48 YNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 44445556666778888873 3333334334433 356776665
No 285
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=37.43 E-value=72 Score=23.94 Aligned_cols=32 Identities=28% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++++++ +.|..+..++..|.+.|..++.++.
T Consensus 125 ~k~vlvl-GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 125 GFRGLVI-GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CceEEEE-cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4556655 6676777788889999998888775
No 286
>PRK00919 GMP synthase subunit B; Validated
Probab=37.42 E-value=93 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEeCCChhHHHHHHHHHH-CCCCcee--EccccH
Q 031899 100 RFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGIT--DIAGGF 139 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g~~a~~~~~~L~~-~G~~~v~--~l~GG~ 139 (151)
.+.. .++++...+|..|..++..+.+ .|+ ++. .++.|+
T Consensus 18 ~~~~-~kVlVa~SGGVDSsvla~la~~~lG~-~v~aV~vD~G~ 58 (307)
T PRK00919 18 EIGD-GKAIIALSGGVDSSVAAVLAHRAIGD-RLTPVFVDTGL 58 (307)
T ss_pred HhCC-CCEEEEecCCHHHHHHHHHHHHHhCC-eEEEEEEECCC
Confidence 3444 6677777888888888888866 586 344 345554
No 287
>PLN02440 amidophosphoribosyltransferase
Probab=37.37 E-value=57 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=27.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEccc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
+++.|+++++ +|.....+++.|++.|.+.|++...
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 4678888876 5788888999999999988876543
No 288
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=37.24 E-value=81 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=16.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+.+|++-...|..|..++..|++.|++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G~e 31 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQGYE 31 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcCCc
Confidence 345666556666666666666666663
No 289
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=37.21 E-value=76 Score=22.64 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=22.1
Q ss_pred CCeEEEEe---CCChhHHHHHHHHHHCCCCceeE
Q 031899 104 HDEIIVGC---QSGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 104 ~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
++.|++.. ++|.....+...|++.|.+++.+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v 155 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKV 155 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEE
Confidence 45566654 36777778888888888877654
No 290
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=37.09 E-value=81 Score=25.59 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=27.4
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH-----CCC---CceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 143 (151)
.+..-.-|++|++|..+..+|-.|.. .|. ..+..+.|+|.+|.
T Consensus 103 ~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 103 TPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 34333468889999877766655532 243 34667788887764
No 291
>PRK08264 short chain dehydrogenase; Validated
Probab=36.84 E-value=85 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=24.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++.++|...+|.-...++..|.+.|+++|..+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 456777777777777788888888885566554
No 292
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=36.68 E-value=55 Score=22.87 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=24.4
Q ss_pred EEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 108 IVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
|+.|.....-..+...++..||.++-+++++
T Consensus 75 vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~ 105 (187)
T COG3620 75 VVSVSPDDSISDVVNLMRDKGISQLPVIEED 105 (187)
T ss_pred eeEECchhhHHHHHHHHHHcCCccCceeeCC
Confidence 4567777777789999999999988777654
No 293
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.67 E-value=56 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.431 Sum_probs=21.6
Q ss_pred EEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899 107 IIVGCQSGK---RSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 107 iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l 135 (151)
|.+.|+.|. ....+++.|...||..+..|
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 888898763 34468899999999765544
No 294
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=36.54 E-value=1.3e+02 Score=20.93 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
...++.....+.++..++++...-.....+...|++.|| ++.++
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~ 168 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEIT 168 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEE
Confidence 345666666677777777654444566678888999998 54443
No 295
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=36.48 E-value=66 Score=22.08 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=50.8
Q ss_pred CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc---cCCCCeEEEEe
Q 031899 38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGC 111 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~~c 111 (151)
....++-.++++.++.+ .+++|.+. |..|-.+..|+-- .+++..-... +-...-|-+||
T Consensus 53 ~~~~~~G~~lk~~l~~~~YYlIF~dLkA---fp~~~~~~~I~ty------------eeFl~S~CelvllIvD~~yv~Iyc 117 (153)
T PF10903_consen 53 DEEIMTGSELKKLLKDNDYYLIFLDLKA---FPKGETVTEINTY------------EEFLNSKCELVLLIVDSSYVSIYC 117 (153)
T ss_pred CceeeehHHHHHHhhcCCeEEEEEEeee---CcCCCCccccccH------------HHHhcCCceEEEEEEeccEEEEEE
Confidence 34568899999998865 44566653 3323222222110 1222221111 22355678889
Q ss_pred CCChhHHHHHHHHHHCCCCceeEcc
Q 031899 112 QSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 112 ~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
..-..-..+.+.....||.++..+.
T Consensus 118 Kd~~~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 118 KDQEIIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred cCHHHHHHHHHHHHHCCceEEEEEe
Confidence 9887777888999999999988664
No 296
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.34 E-value=86 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 118 MMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
..+|.+++++|+ +|.++......|.++
T Consensus 308 ~TiAEYfRD~G~-~Vllm~DS~sR~AeA 334 (578)
T TIGR01043 308 ITIAEYFRDMGY-DVALMADSTSRWAEA 334 (578)
T ss_pred HHHHHHHHHCCC-CEEEEecChhHHHHH
Confidence 457888999998 799898999999876
No 297
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=36.34 E-value=75 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.1
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.+.++++.+.+|..|..+++.+.+.|++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 4567777788888888888888888873
No 298
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=36.26 E-value=34 Score=28.37 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHC
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 127 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~ 127 (151)
+.+.+++.. +..||+||.+|.|.......|.+.
T Consensus 240 ~qh~laK~s-dadiVVyigCGERGNEmtevL~eF 272 (588)
T COG1155 240 SQHTLSKLA-DGDIVIYVGCGERGNEMTEVLQEF 272 (588)
T ss_pred hhhhhhhhc-cCCEEEEEecCCccchHHHHHHhC
Confidence 333344432 667899999998888888888763
No 299
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=36.14 E-value=75 Score=25.47 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=26.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 105 DEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
..++++|++|..|..+|-.|.+ -|=.+|..+.|++.+|.
T Consensus 102 ~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 102 YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 3677888999887776666544 25445667788877664
No 300
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=36.11 E-value=80 Score=22.88 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCC--ceeEccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFA--GITDIAG 137 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~--~v~~l~G 137 (151)
+++++++ +.|.-+.-++..|...|.+ ++++++-
T Consensus 25 ~~rvlvl-GAGgAg~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 25 EVKIVIN-GAGAAGIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred CCEEEEE-CchHHHHHHHHHHHHcCcCcceEEEEeC
Confidence 4555554 6677777788888899998 8887653
No 301
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=36.08 E-value=64 Score=26.16 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.+|+++ .+|..-..+++.|++.|...|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 356777775 478888889999999999887754
No 302
>PRK07036 hypothetical protein; Provisional
Probab=35.95 E-value=91 Score=25.28 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=27.1
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHH-----CC---CCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLN-----AG---FAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G---~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-|++|++|..|..+|-.|.+ .| =+.|..+.|+|.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 44434468889999777766655532 13 235666788887764
No 303
>PRK06105 aminotransferase; Provisional
Probab=35.73 E-value=95 Score=25.09 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=28.4
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHH-----CCC---CceeEccccHHHHHh
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWRQ 144 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~~ 144 (151)
...+.+-.-|++|++|..+..+|-.|.. .|+ .+|..+.+||.+|..
T Consensus 103 ~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~ 156 (460)
T PRK06105 103 AMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTI 156 (460)
T ss_pred HhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcch
Confidence 3344333467889999877766655532 243 346667888887753
No 304
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=35.42 E-value=86 Score=19.39 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=19.2
Q ss_pred CCeEEEEeCCC-hhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQSG-KRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~~g-~~a~~~~~~L~~~G~~ 130 (151)
+.+|++|+.++ ..+.++...|.+.|.+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 45688887754 6666777788888764
No 305
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=35.30 E-value=74 Score=25.25 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeE
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITD 134 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~ 134 (151)
+++.+|++. .+|.....++..|++.|...|+.
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 345678875 47888889999999999988764
No 306
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=35.09 E-value=91 Score=21.45 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=24.8
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHCCCCce
Q 031899 102 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI 132 (151)
Q Consensus 102 ~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v 132 (151)
.++++|+++.+ +|.....++..|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 46788998875 67777788899999998654
No 307
>PRK02227 hypothetical protein; Provisional
Probab=35.03 E-value=1.9e+02 Score=21.46 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=23.2
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHh
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEEFS 67 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~ 67 (151)
...+.+|+...+..+.-|||+-+|.|=.
T Consensus 6 Svr~~eEA~~Al~~GaDiIDvK~P~~Ga 33 (238)
T PRK02227 6 SVRNLEEALEALAGGADIIDVKNPKEGS 33 (238)
T ss_pred ccCCHHHHHHHHhcCCCEEEccCCCCCC
Confidence 3468889988889999999999998733
No 308
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=34.69 E-value=85 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.+.++++...+|..|..+++.+.+.|++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~ 198 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR 198 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe
Confidence 4556777777788888888888888874
No 309
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=34.67 E-value=93 Score=28.07 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
...+|++|.|.+-..|..++..|...|+. ..+|.+.
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~-h~vLnak 631 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIA-HNVLNAK 631 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCC-ceeecCC
Confidence 46889999999999999999999999995 4456653
No 310
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.32 E-value=1.5e+02 Score=20.87 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=32.8
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCc---eeEcccc----HHHHHhCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAG---ITDIAGG----FAAWRQNGLPT 149 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~---v~~l~GG----~~~W~~~g~pv 149 (151)
+.++++|+++.+ +|.....+...+++.|.+- +.+++.+ -......|.|+
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~ 172 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRV 172 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcE
Confidence 567889999986 6788888889999999752 2234433 33333456665
No 311
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.31 E-value=1.1e+02 Score=24.44 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=24.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++ |++.+.|..+..++..|...|+.++.+..
T Consensus 181 ~kk-vlviGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 181 SKN-VLIIGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred CCE-EEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 444 44567788888899999999998777665
No 312
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=34.16 E-value=94 Score=24.64 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=25.4
Q ss_pred eEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAW 142 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W 142 (151)
.-|++|++|..+..+|-.|.+ .|=+.+..+.|||.+|
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~ 133 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGR 133 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCC
Confidence 357889999888777766644 2544566677877655
No 313
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.98 E-value=1.4e+02 Score=19.61 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=24.7
Q ss_pred HHHHHHHHhc--cCCCCeEEEEeCCChhHH--HHHHHHHHCCCC
Q 031899 91 LKFVEEVSTR--FRKHDEIIVGCQSGKRSM--MAATDLLNAGFA 130 (151)
Q Consensus 91 ~~~~~~~~~~--~~~~~~iv~~c~~g~~a~--~~~~~L~~~G~~ 130 (151)
+.+.+.+... +.+++-+|+++.+|.... .++...++.|..
T Consensus 89 ~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 89 EGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp GTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 3455555555 667888899999886543 577778889974
No 314
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=33.94 E-value=1e+02 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=26.5
Q ss_pred eEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.-|++|++|..+..+|-.|.+ .|-+.|..+.|||.+|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 468899999887776665543 35445667788887664
No 315
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=33.73 E-value=56 Score=29.24 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
-.+.++|++|.....+-.+...|.+.|| +...|.||..
T Consensus 611 ~e~~~tiiFv~~qe~~d~l~~~L~~ag~-~~~slHGgv~ 648 (997)
T KOG0334|consen 611 YEDGKTIIFVDKQEKADALLRDLQKAGY-NCDSLHGGVD 648 (997)
T ss_pred hhcCCEEEEEcCchHHHHHHHHHHhcCc-chhhhcCCCc
Confidence 3466788888888888888999999999 4556899875
No 316
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.65 E-value=1.2e+02 Score=21.42 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=25.4
Q ss_pred CCCCeEEEEeCCC--hhHHHHHHHHHHCCCC-ce---eEcccc
Q 031899 102 RKHDEIIVGCQSG--KRSMMAATDLLNAGFA-GI---TDIAGG 138 (151)
Q Consensus 102 ~~~~~iv~~c~~g--~~a~~~~~~L~~~G~~-~v---~~l~GG 138 (151)
.+..-|.+||+.| ..++..-..++..|+. +| ..++|+
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~ 61 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGG 61 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCC
Confidence 4566789999876 4555666788888763 33 356776
No 317
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=33.55 E-value=96 Score=19.37 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHCCCCceeEcc
Q 031899 116 RSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.....+..|.+.|| +++.-.
T Consensus 14 ~~~~~~~~l~~~G~-~l~aT~ 33 (110)
T cd01424 14 EAVEIAKRLAELGF-KLVATE 33 (110)
T ss_pred HHHHHHHHHHHCCC-EEEEch
Confidence 34455666666666 354433
No 318
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=33.53 E-value=2.1e+02 Score=23.35 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=47.9
Q ss_pred cCHHHHHHHHh----CC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899 42 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 116 (151)
Q Consensus 42 i~~~~~~~~~~----~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 116 (151)
++.+++.++.+ -+ -.||.|++.+|....-=-|+.-+-.+...-...--+.+....+...+++ .+++++.+|..
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~--~~~~vseSGI~ 220 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPA--DVIVISESGIY 220 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEeCCCC
Confidence 34445555543 24 5789999999887432224433333211111111233455666666764 35666789977
Q ss_pred HHHHHHHHHHCCCCce
Q 031899 117 SMMAATDLLNAGFAGI 132 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v 132 (151)
+..-...|+. |++.+
T Consensus 221 t~~d~~~~~~-~~dav 235 (454)
T PRK09427 221 THAQVRELSP-FANGF 235 (454)
T ss_pred CHHHHHHHHh-cCCEE
Confidence 6665656655 67543
No 319
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=33.52 E-value=82 Score=26.07 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++|+++++ +|.....+++.|++.|.+.|.+--
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri 402 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRI 402 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 5678888876 477788899999999998877543
No 320
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=33.51 E-value=93 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=26.5
Q ss_pred eEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.-|++|++|..+..+|-.|.. .|-..|..+.|+|.+|.
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 358899999887777766544 25445666788887764
No 321
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.37 E-value=90 Score=18.79 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=17.8
Q ss_pred CCeEEEEeC------CChhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~------~g~~a~~~~~~L~~~G~~ 130 (151)
+.+||+|.. ....+..+...|.+.|.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 456777754 235666777788887764
No 322
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=33.30 E-value=84 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.6
Q ss_pred EEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 108 IVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
|++++.|.-...++..|...|+.++.++|..
T Consensus 24 V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 24 VAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3445667777789999999999888888876
No 323
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.13 E-value=1e+02 Score=19.48 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=5.3
Q ss_pred HHHHHHCCCC
Q 031899 121 ATDLLNAGFA 130 (151)
Q Consensus 121 ~~~L~~~G~~ 130 (151)
+.+|++.|++
T Consensus 35 a~~L~~~Gi~ 44 (112)
T cd00532 35 SRVLADAGIP 44 (112)
T ss_pred HHHHHHcCCc
Confidence 4445556653
No 324
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=32.73 E-value=1.5e+02 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=27.9
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccH
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGF 139 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~ 139 (151)
+.+| +-.++++|++|..+..+|..|.+. ++.++..|+--+
T Consensus 97 stlP-eLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAY 138 (452)
T KOG1403|consen 97 STLP-ELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAY 138 (452)
T ss_pred hcCC-CceEEEEecCCchhhHHHHHHHHhhcccCceEEEechh
Confidence 3344 467899999998888877777553 666777666443
No 325
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=32.73 E-value=1.5e+02 Score=20.05 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHhcc------CCCCeEEEEeCCC-hhHH-HHHHHHHHCCCC
Q 031899 85 SGMTKNLKFVEEVSTRF------RKHDEIIVGCQSG-KRSM-MAATDLLNAGFA 130 (151)
Q Consensus 85 ~~~~~~~~~~~~~~~~~------~~~~~iv~~c~~g-~~a~-~~~~~L~~~G~~ 130 (151)
++..+.....+.+++.+ .++.-|-+.|-.| .|+. .+|-.|.+.|.+
T Consensus 72 dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~gmk 125 (173)
T KOG2836|consen 72 DGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMK 125 (173)
T ss_pred cCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHcccc
Confidence 44455555555555432 4688899999876 4555 467788888864
No 326
>PRK07480 putative aminotransferase; Validated
Probab=32.71 E-value=98 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=27.1
Q ss_pred HHhccCCCCeEEEEeCCChhHHHHHHHHHHC-----CC---CceeEccccHHHHH
Q 031899 97 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAWR 143 (151)
Q Consensus 97 ~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G~---~~v~~l~GG~~~W~ 143 (151)
+...++.+-.-+++|++|..+..+|-.|.+. |- ..|..+.|||.+|.
T Consensus 103 L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 157 (456)
T PRK07480 103 LAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGST 157 (456)
T ss_pred HHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 3333444334577899997777666554332 32 23556677777664
No 327
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=32.66 E-value=58 Score=28.71 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
....++|+|++-.++..++..|+..|+ ..|.|.+.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~ 305 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLR 305 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCC
Confidence 346789999999999999999999887 56777654
No 328
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=32.65 E-value=83 Score=25.83 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=27.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++++|+++++ +|.....+++.|++.|.+.|.+..
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~ 385 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAI 385 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEE
Confidence 4678888876 477788899999999998877654
No 329
>PRK07046 aminotransferase; Validated
Probab=32.43 E-value=40 Score=27.23 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=26.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAW 142 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W 142 (151)
.-|.+|++|..|...|-.|.+. |=+.|..+.|+|.+|
T Consensus 131 ~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~ 169 (453)
T PRK07046 131 PYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGT 169 (453)
T ss_pred CEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 3578899998887777666443 545676778888777
No 330
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.40 E-value=80 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++.+|++.+ +|.....++..|++.|.+.++...
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~ 265 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACA 265 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEE
Confidence 3566777754 677788899999999998877543
No 331
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=32.37 E-value=1.1e+02 Score=18.05 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=21.3
Q ss_pred CeEEEEeCCC----hhHHHHHHHHHHCCCCceeEcc
Q 031899 105 DEIIVGCQSG----KRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 105 ~~iv~~c~~g----~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+.+|++|..- .|-..++..|.+.|| .|+.+|
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~-~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGY-AVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 5567776532 455568889999999 566554
No 332
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.18 E-value=73 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHhccCCCCeEEEEeCCC-hhHHHHHHHHHHCCCCc
Q 031899 94 VEEVSTRFRKHDEIIVGCQSG-KRSMMAATDLLNAGFAG 131 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g-~~a~~~~~~L~~~G~~~ 131 (151)
-.+++..+..++.||++..+| ....+++++|.+.||.+
T Consensus 361 R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~ 399 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD 399 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc
Confidence 344455566788888888776 56779999999999964
No 333
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=32.01 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
++++++++ +.|..+..++..|...|+.++.+..--+
T Consensus 177 ~~~~vlvI-GAGem~~lva~~L~~~g~~~i~IaNRT~ 212 (414)
T COG0373 177 KDKKVLVI-GAGEMGELVAKHLAEKGVKKITIANRTL 212 (414)
T ss_pred ccCeEEEE-cccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 35555555 7778888999999999998888775443
No 334
>PRK11024 colicin uptake protein TolR; Provisional
Probab=31.98 E-value=1.4e+02 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899 102 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 102 ~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.++++.++.. .+-..+...+++.|+.++.+.
T Consensus 101 ~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 101 NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4566788877655 345567778899999988754
No 335
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=31.90 E-value=2e+02 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+..+|.+++..|. +|-++-..+..|..+
T Consensus 240 A~tiAEyfrd~G~-~VLl~~DslTR~A~A 267 (444)
T PRK08972 240 ATTIAEYFRDQGL-NVLLLMDSLTRYAQA 267 (444)
T ss_pred HHHHHHHHHHcCC-CEEEEEcChHHHHHH
Confidence 3457788888996 788777778877665
No 336
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=31.77 E-value=12 Score=22.84 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
..+-...+.-.+.+||-+|+.+....... .-++-.|-.+..++-|-+..+.
T Consensus 4 ~eII~~I~~skKkTPVKvYv~G~l~~~~~-~~~~~fg~~~~~vvfGd~~~i~ 54 (83)
T PF08503_consen 4 EEIIRYIKNSKKKTPVKVYVKGDLAGIDF-EDVKVFGSGNFGVVFGDWDEIK 54 (83)
T ss_dssp HHHHHHHHHCTTB-EEEEEEEESCTC----TTSEEEEESSEEEEEEEHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeeeecCCCh-hheEEEeCCCcEEEEecHHHHH
Confidence 44555666667889999999875333222 3444455556677777776654
No 337
>PRK06936 type III secretion system ATPase; Provisional
Probab=31.76 E-value=2.1e+02 Score=23.29 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+...|.++++.|. +|-++-..+..|..+
T Consensus 240 a~tiAEyfrd~G~-~Vll~~DslTR~A~A 267 (439)
T PRK06936 240 ATSIAEYFRDQGK-RVLLLMDSVTRFARA 267 (439)
T ss_pred HHHHHHHHHHcCC-CEEEeccchhHHHHH
Confidence 3457788889997 788887888888665
No 338
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=31.63 E-value=1.9e+02 Score=20.56 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred CccccCHHHHHHHHhCCCEEE-ecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCC-C-
Q 031899 38 VPTSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS-G- 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~ii-DvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~-g- 114 (151)
.+..+|...+..+.+.++++. |-+-..+......+++..+... .....+..+.+.+...+++.|++.+.. .
T Consensus 10 ~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~g~~V~~L~~GDP~ 83 (229)
T TIGR01465 10 DPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSA------GMSLEEIVDIMSDAHREGKLVVRLHTGDPS 83 (229)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcC------CCCHHHHHHHHHHHHHCCCeEEEEeCcCcc
Confidence 455677777777777777666 4333333332222344333210 001122233333334456667666632 2
Q ss_pred --hhHHHHHHHHHHCCCCceeEccccHHHH----HhCCCCC
Q 031899 115 --KRSMMAATDLLNAGFAGITDIAGGFAAW----RQNGLPT 149 (151)
Q Consensus 115 --~~a~~~~~~L~~~G~~~v~~l~GG~~~W----~~~g~pv 149 (151)
.........+++.|+ ++.++.| ..+. ...|.|+
T Consensus 84 ~~~~~~~l~~~~~~~g~-~veviPG-iSS~~aa~a~~g~~l 122 (229)
T TIGR01465 84 IYGAIAEQMQLLEALGI-PYEVVPG-VSSFFAAAAALGAEL 122 (229)
T ss_pred ccccHHHHHHHHHHCCC-CEEEECC-hhHHHHHHHHcCCCc
Confidence 234456667788887 5777765 3322 3346664
No 339
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.60 E-value=1e+02 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=25.8
Q ss_pred eEEEEeCCChhHHHHHHHHHH-----CCC---CceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.+.. .|+ .++..+.+||.+|.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t 160 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGET 160 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCc
Confidence 467889999887776665542 244 34667788887765
No 340
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=31.53 E-value=1.5e+02 Score=21.60 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=31.3
Q ss_pred CCCCCCCHHHHHHHHhcc---CCCCeEEEEeCCC-hh--HHHHHHHHHHCCCC
Q 031899 84 GSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSG-KR--SMMAATDLLNAGFA 130 (151)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~---~~~~~iv~~c~~g-~~--a~~~~~~L~~~G~~ 130 (151)
.++..++++.+.+..+.+ .+...|-|.|..| .| ...++++++..|++
T Consensus 124 ~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 124 ADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMT 176 (225)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCC
Confidence 355556666666665543 2367899999877 23 34577888888885
No 341
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.50 E-value=1e+02 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
+++|++ .+.|.-...++..|...|+.++.++|..
T Consensus 21 ~~~Vlv-iG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLI-IGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEE-ECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 444444 4667677789999999999999988876
No 342
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=31.49 E-value=2.2e+02 Score=21.14 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=39.0
Q ss_pred CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCce
Q 031899 55 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 132 (151)
Q Consensus 55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v 132 (151)
..++|+.+.+|...-.=-|+-.+-...........+.+...++...++.+ +++++-+|..+..-+..+...|++-|
T Consensus 162 ~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~--~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 162 DVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSD--RLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCC--CEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 56788888776542211133222221100001112234455555555432 35557788776777777888898654
No 343
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=31.46 E-value=1.1e+02 Score=18.81 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=18.8
Q ss_pred CCeEEEEeC------CChhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~------~g~~a~~~~~~L~~~G~~ 130 (151)
+.+||+|.. ....+.++-..|.+.|++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 557888864 245666788888888874
No 344
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=31.43 E-value=88 Score=24.26 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.0
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.++++. .+|.....++..|++.|-+.++.+
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~ 264 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAY 264 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 456788875 478888889999999999877743
No 345
>PLN02293 adenine phosphoribosyltransferase
Probab=31.40 E-value=1.2e+02 Score=21.38 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=25.8
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~ 133 (151)
+.++++++++.+ +|.....+...|++.|.+.+.
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~ 157 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEVVE 157 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEE
Confidence 457888888875 678888889999999985433
No 346
>PLN02347 GMP synthetase
Probab=31.27 E-value=1.6e+02 Score=24.63 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHH-CCCCcee--EccccH
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGIT--DIAGGF 139 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~-~G~~~v~--~l~GG~ 139 (151)
++.+...+.++.++++...+|..|+.++..+.+ .|. ++. .++.|+
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~ 266 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGL 266 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCC
Confidence 344444455567788877888899988888877 684 554 456554
No 347
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=31.08 E-value=73 Score=22.43 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=12.9
Q ss_pred CCCCeEEEEeCCC-hhHH
Q 031899 102 RKHDEIIVGCQSG-KRSM 118 (151)
Q Consensus 102 ~~~~~iv~~c~~g-~~a~ 118 (151)
..+.|+|++|..| .||.
T Consensus 168 ~~~~pivVhc~~G~gRsg 185 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSG 185 (235)
T ss_dssp TTSSEEEEESSSSSHHHH
T ss_pred CCccceEeeccccccccc
Confidence 3578999999887 4554
No 348
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=30.99 E-value=2.3e+02 Score=21.23 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=46.5
Q ss_pred CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899 55 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 131 (151)
Q Consensus 55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~ 131 (151)
-+++-|.+.+|.....--|+.-|-.+.-.-.....+.+....+...++.+ ++++..||..+..=...+...|++-
T Consensus 158 ~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~--~~~IsESGI~~~~dv~~l~~~ga~a 232 (254)
T COG0134 158 EVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD--VILISESGISTPEDVRRLAKAGADA 232 (254)
T ss_pred eeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC--cEEEecCCCCCHHHHHHHHHcCCCE
Confidence 67899999888775444555444332111111112234455555566666 4566789998888889999999853
No 349
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=30.96 E-value=1.1e+02 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=25.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.|.+. |-..+..+.|||.+|.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 102 AKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred ceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 3567788998877777666442 4345666778777663
No 350
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.90 E-value=1.1e+02 Score=17.47 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.....+..++.+..+.+..++......+..+++..||+
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~ 52 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHE 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCE
Confidence 34556667777777777777776777788899999996
No 351
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=30.90 E-value=1.6e+02 Score=24.27 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=34.2
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCce--e-Ec---cccHHHHHhCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI--T-DI---AGGFAAWRQNGLPT 149 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v--~-~l---~GG~~~W~~~g~pv 149 (151)
+.++++|+++.+ +|.....+...|++.|.+-+ . ++ .||-....+.|+|+
T Consensus 390 ~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~ 447 (477)
T PRK05500 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQA 447 (477)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCE
Confidence 457888999876 78888899999999997522 2 22 24444555567775
No 352
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=30.88 E-value=1.2e+02 Score=24.41 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=25.6
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----C---CCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 143 (151)
.+..-.-|++|++|..+..+|-.|... | =.++..+.|||.+|.
T Consensus 105 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 155 (445)
T PRK09221 105 APGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVG 155 (445)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccc
Confidence 343333577899997776665554331 3 234666788887663
No 353
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=30.87 E-value=1.1e+02 Score=24.29 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=25.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.|.+. |-..+..+.|||.+|.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 3567778998877777666542 4445667788887763
No 354
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=30.80 E-value=2.6e+02 Score=21.87 Aligned_cols=46 Identities=28% Similarity=0.218 Sum_probs=33.0
Q ss_pred CeEEEEe-CCChh---HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899 105 DEIIVGC-QSGKR---SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150 (151)
Q Consensus 105 ~~iv~~c-~~g~~---a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 150 (151)
+|.|+.| .+|.. -..+-..++..|-++|+++.-++.+=..+|+|+.
T Consensus 101 ~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ 150 (342)
T COG1077 101 KPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM 150 (342)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc
Confidence 3344445 56632 2234567788999999999999999889999874
No 355
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=30.67 E-value=1.1e+02 Score=17.28 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=16.7
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHCCCC
Q 031899 106 EIIVGCQSG-KRSMMAATDLLNAGFA 130 (151)
Q Consensus 106 ~iv~~c~~g-~~a~~~~~~L~~~G~~ 130 (151)
+|++|..++ ..+..+.+.|.+.|.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 467777654 5666677777777764
No 356
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=30.39 E-value=92 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=24.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.-++.++.|..+..++..|.+.|..++.++.-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 33455677777878999999999988887754
No 357
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=30.35 E-value=1.3e+02 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.5
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----C---CCceeEccccHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAA 141 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~ 141 (151)
++.+-.-|++|++|..+..+|-.|... | =+.+..+.|||.+
T Consensus 100 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG 148 (429)
T PRK06173 100 LPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHG 148 (429)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCC
Confidence 443334688999998877766555331 3 2346667777765
No 358
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=30.24 E-value=1.7e+02 Score=21.07 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=23.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCC---ceeEc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFA---GITDI 135 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~---~v~~l 135 (151)
+.+-.++|.+...+..+...|++.|.+ ++.++
T Consensus 178 ~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~ 212 (270)
T cd01544 178 NLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVI 212 (270)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 345678888888888888999999984 45543
No 359
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=30.20 E-value=1e+02 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+++.++++.+ +|.....++..|++.|.+++++.
T Consensus 209 ~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~ 244 (308)
T TIGR01251 209 EGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAA 244 (308)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4567777754 67778889999999999877643
No 360
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=30.05 E-value=88 Score=19.95 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
.+..+||.|.....+...+..+.+.|. .|..+.+-+
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 355799999888888888999999998 565555543
No 361
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=29.95 E-value=2e+02 Score=21.94 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCCeEEEEeCCC-hhH-------------HHHHHHHHHCCCCceeEcc----ccHH-HHHhCC
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSG-KRS-------------MMAATDLLNAGFAGITDIA----GGFA-AWRQNG 146 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g-~~a-------------~~~~~~L~~~G~~~v~~l~----GG~~-~W~~~g 146 (151)
.+.......+....|+|+++.+| .|- +.+...|++.|..-+.+|. ||.. .|..-|
T Consensus 145 ki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lG 218 (294)
T COG0777 145 KITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG 218 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhcc
Confidence 34444444456678999999886 221 1234566778877677774 7754 344333
No 362
>PF11181 YflT: Heat induced stress protein YflT
Probab=29.92 E-value=1.1e+02 Score=19.08 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=4.3
Q ss_pred eEEEEeCCCh
Q 031899 106 EIIVGCQSGK 115 (151)
Q Consensus 106 ~iv~~c~~g~ 115 (151)
.|.|+.....
T Consensus 28 dI~Vva~d~~ 37 (103)
T PF11181_consen 28 DIYVVAKDKD 37 (103)
T ss_pred cEEEEEcCch
Confidence 3444444333
No 363
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=29.90 E-value=95 Score=25.26 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHhccCC-CCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHHh
Q 031899 93 FVEEVSTRFRK-HDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 93 ~~~~~~~~~~~-~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~~ 144 (151)
+.+.+.+.++. ....++++++|..|..+|-.+.+. |-.+|..+.|+|.+...
T Consensus 104 ~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~ 158 (447)
T COG0160 104 LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTL 158 (447)
T ss_pred HHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccch
Confidence 44445555565 467788889998888777766543 54567788888876543
No 364
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=29.89 E-value=2.3e+02 Score=22.82 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899 116 RSMMAATDLLNAGFAGITDIAGGFAAWRQNG 146 (151)
Q Consensus 116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 146 (151)
.+...|.+|++.|. +|-++-..+..|..+.
T Consensus 217 ~a~~iAEyfrd~G~-~Vll~~DslTr~A~A~ 246 (418)
T TIGR03498 217 TATAIAEYFRDQGK-DVLLLMDSVTRFAMAQ 246 (418)
T ss_pred HHHHHHHHHHHcCC-CEEEeccchhHHHHHH
Confidence 34457788889996 6877777888886653
No 365
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=29.87 E-value=1.2e+02 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=10.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCC
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
.++|...+|.-...++..|.+.|+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC
Confidence 344444444444444444444444
No 366
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=29.79 E-value=1.8e+02 Score=23.71 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 146 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 146 (151)
+...|.++++.|. +|-++-..+..|..+.
T Consensus 236 a~tiAEyfrd~G~-~Vll~~DslTr~A~A~ 264 (442)
T PRK08927 236 TLAIAEYFRDQGK-DVLCLMDSVTRFAMAQ 264 (442)
T ss_pred HHHHHHHHHHCCC-cEEEEEeCcHHHHhhh
Confidence 3347788888997 7887777888887664
No 367
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=29.73 E-value=1.8e+02 Score=23.50 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHH
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 126 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~ 126 (151)
.++.+.+.+.+|.+-.++++.++|..|..+|-.|.+
T Consensus 95 ~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar 130 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLKVVFFVNSGSEANELALKMAR 130 (442)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHH
Confidence 356667777889888899999999888888777655
No 368
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=29.70 E-value=1.3e+02 Score=21.20 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=25.0
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHCCCCce
Q 031899 102 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI 132 (151)
Q Consensus 102 ~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v 132 (151)
.++++|+++.+ +|.....++..|++.|.+.+
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 46788999875 67788889999999998644
No 369
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=29.52 E-value=1.1e+02 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+.++++.-.+|..|..+++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 456666667788899999999999985
No 370
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=29.52 E-value=70 Score=22.83 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.0
Q ss_pred CCCeEEEEeCCC-hhHH
Q 031899 103 KHDEIIVGCQSG-KRSM 118 (151)
Q Consensus 103 ~~~~iv~~c~~g-~~a~ 118 (151)
...||+|+|..| .|+.
T Consensus 165 ~~~pivVHC~~G~gRsg 181 (231)
T cd00047 165 GSGPIVVHCSAGVGRTG 181 (231)
T ss_pred CCCCeEEECCCCCCccc
Confidence 467999999877 4544
No 371
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=29.40 E-value=2.5e+02 Score=21.22 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+...|.+|+..|. +|-++-..+..|..+
T Consensus 149 a~aiAE~fr~~G~-~Vlvl~DslTr~A~A 176 (274)
T cd01132 149 GCAMGEYFMDNGK-HALIIYDDLSKQAVA 176 (274)
T ss_pred HHHHHHHHHHCCC-CEEEEEcChHHHHHH
Confidence 4567788888996 677776677777543
No 372
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=29.36 E-value=1.7e+02 Score=22.62 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.++...+.+.+..+..+|+.|.....+..+...+++.|+.
T Consensus 183 ~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~ 222 (391)
T cd06372 183 PDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLM 222 (391)
T ss_pred hHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCC
Confidence 3455555555555667788887777777788888899984
No 373
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=29.25 E-value=1.1e+02 Score=25.16 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.5
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++||++.+ +|.....++..|++.|-+.|++.
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~ 394 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLR 394 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEE
Confidence 4677888876 57888889999999999877754
No 374
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=28.97 E-value=1.1e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCcee
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~ 133 (151)
.+.++++.+.+|..|..+++.+.+.|++ |.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG~~-v~ 205 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRGSR-VH 205 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcCCE-EE
Confidence 3557788888889999999999888984 44
No 375
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=28.94 E-value=1.3e+02 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 145 (151)
+..+|.+++++|+ +|.++......|.++
T Consensus 313 g~tiAEYfRD~G~-~Vll~~DS~tR~AeA 340 (591)
T TIGR01042 313 GITLAEYFRDMGY-NVSMMADSTSRWAEA 340 (591)
T ss_pred HHHHHHHHHhcCC-CEEEEecChHHHHHH
Confidence 3356788999998 788888899999775
No 376
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=28.91 E-value=2.1e+02 Score=21.44 Aligned_cols=53 Identities=8% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHH
Q 031899 69 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 126 (151)
Q Consensus 69 ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~ 126 (151)
..|.|-.++|.+.+. .++-++......+|.-+.-|++..+...+.++..+..+
T Consensus 136 keiqgff~~pvdnlr-----aspfllqyiqe~ipdyrnavivaksp~~akka~syaer 188 (354)
T KOG1503|consen 136 KEIQGFFSIPVDNLR-----ASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAER 188 (354)
T ss_pred Hhhcceecccccccc-----cCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHH
Confidence 457788899985332 22334444555688777777778777655555555544
No 377
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=28.90 E-value=1.7e+02 Score=18.93 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899 102 RKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 102 ~~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l 135 (151)
.++.++++-++... .-..+...+++.|++++.+.
T Consensus 91 ~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 91 NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 45667888887663 34456778899999988753
No 378
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=28.85 E-value=3.3e+02 Score=22.35 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=56.6
Q ss_pred CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCC-CceeeccccccCCCCCCCHHHHHH-HHhccCCCCeEEEEeCCC
Q 031899 37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHAT-GAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQSG 114 (151)
Q Consensus 37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIp-gAi~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv~~c~~g 114 (151)
+.+..+|..-+..+.+.++++.|--- .++...+++ .+..+...........+ .+.+.. +......++.|++.+...
T Consensus 13 Gdp~LLTlrA~~~L~~ADVVvydrlv-~~~~l~~~~~~~~~i~~gk~~~~~~~~-qe~i~~~l~~~a~~Gk~VvrL~~GD 90 (474)
T PRK07168 13 GDEGLITKKAIECLKRADIVLYDRLL-NPFFLSYTKQTCELMYCGKMPKNHIMR-QEMINAHLLQFAKEGKIVVRLKGGD 90 (474)
T ss_pred CChHHHHHHHHHHHHhCCEEEEeCcC-CHHHHhhcCCCcEEEeccCcCCCcccc-HHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 34566777777777777877776332 222222332 23222211111111111 122322 233334566777776543
Q ss_pred ----hhHHHHHHHHHHCCCCceeEccc---cHHHHHhCCCCCC
Q 031899 115 ----KRSMMAATDLLNAGFAGITDIAG---GFAAWRQNGLPTE 150 (151)
Q Consensus 115 ----~~a~~~~~~L~~~G~~~v~~l~G---G~~~W~~~g~pv~ 150 (151)
.+....+..|.+.|+ .+.++.| ...+....|.|+.
T Consensus 91 P~vfg~~~ee~~~l~~~gi-~~eVVPGISS~~aaaA~aGiPlt 132 (474)
T PRK07168 91 PSIFGRVGEEAETLAAANI-PYEIVPGITSSIAASSYAGIPLT 132 (474)
T ss_pred chHHhhHHHHHHHHHhCCC-CEEEECChhHHHHHHHHcCCCCC
Confidence 455567778888887 5666665 2334555677763
No 379
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.84 E-value=1e+02 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++++++++.+ +|.....++..|++.|-+.++.+
T Consensus 207 ~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~ 242 (309)
T PRK01259 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAY 242 (309)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEE
Confidence 4567777754 67788889999999999876644
No 380
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=28.80 E-value=2.2e+02 Score=20.33 Aligned_cols=109 Identities=19% Similarity=0.136 Sum_probs=53.6
Q ss_pred CccccCHHHHHHHHhCCCEEEecCChhhHhcCCCC-CceeeccccccCCCCCCCHHHHHH-HHhccCCCCeEEEEeC-CC
Q 031899 38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHAT-GAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQ-SG 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIp-gAi~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv~~c~-~g 114 (151)
.+..+|...+..+.+.++++.|.+...... .+++ .+.-++...... ......+.+.. +...+..++.|++.+. +.
T Consensus 11 ~~~~lT~~a~~~l~~advI~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~g~~V~~l~~GDP 88 (236)
T TIGR01469 11 DPELLTLKALRLLQEADVVLYDALVSPEIL-AYAPPQAELIDVGKRPG-CHSKKQEEINRLLVELAREGKKVVRLKGGDP 88 (236)
T ss_pred ChHHhHHHHHHHHHhCCEEEEeCCCCHHHH-hhCCCCCEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCCeEEEEeCcCc
Confidence 456778888888877888888877643332 2333 222222110000 00011122333 2333344556665543 22
Q ss_pred ---hhHHHHHHHHHHCCCCceeEcccc--H-HHHHhCCCCC
Q 031899 115 ---KRSMMAATDLLNAGFAGITDIAGG--F-AAWRQNGLPT 149 (151)
Q Consensus 115 ---~~a~~~~~~L~~~G~~~v~~l~GG--~-~~W~~~g~pv 149 (151)
.........+.+.|+ ++.++.|= + .+....|.|+
T Consensus 89 ~~~~~~~~l~~~~~~~~~-~v~viPGiSs~~~a~a~~g~~l 128 (236)
T TIGR01469 89 FVFGRGGEEAEALAEAGI-PFEVVPGVTSAIAAAAYAGIPL 128 (236)
T ss_pred ccccCHHHHHHHHHHCCC-CEEEECCccHHHHHHHHcCCCc
Confidence 233345567777776 57777652 1 2334456665
No 381
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=28.56 E-value=62 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCCeEEEEeCCCh----------hHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 102 RKHDEIIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 102 ~~~~~iv~~c~~g~----------~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
..++++.+||+-.- -.......|++.|+ ++.++-||+.++..
T Consensus 29 ~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~-~~~~ligd~ta~ig 80 (410)
T PRK13354 29 KEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGH-RPVILIGGFTGKIG 80 (410)
T ss_pred hcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCC-eEEEEEcccccccC
Confidence 34678899987321 12355667888998 57888888887654
No 382
>PRK13767 ATP-dependent helicase; Provisional
Probab=28.52 E-value=1.1e+02 Score=27.02 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=29.5
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHCCC-----CceeEccccHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGF-----AGITDIAGGFA 140 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~G~-----~~v~~l~GG~~ 140 (151)
+...+++++||++-..+..++..|+...- ..+..+.|++.
T Consensus 281 i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 281 IKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 45567899999998888888888876311 25777888864
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.50 E-value=1.8e+02 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=24.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
..-|++|+.|..+..++..|.+.|+ ++.+++-
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 3446778999888889999999998 5666643
No 384
>PRK12829 short chain dehydrogenase; Provisional
Probab=28.48 E-value=1.3e+02 Score=21.58 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++.++|...+|.-...++..|.+.|+ +|..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 456777777777777778888888888 466554
No 385
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=28.48 E-value=1.1e+02 Score=18.28 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=6.1
Q ss_pred HHHHHHCCCC
Q 031899 121 ATDLLNAGFA 130 (151)
Q Consensus 121 ~~~L~~~G~~ 130 (151)
+.+|++.|++
T Consensus 23 a~~L~~~Gi~ 32 (90)
T smart00851 23 AKFLREAGLP 32 (90)
T ss_pred HHHHHHCCCc
Confidence 4556667763
No 386
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=28.39 E-value=2.1e+02 Score=20.60 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=51.5
Q ss_pred CccccCHHHHHHHHhCCCEEEe-cCC-----hhhHhcCCCCCc-e--e--eccccccCCCCCCCHHHHHHHHhccCCCCe
Q 031899 38 VPTSVPVRVAHELLQAGHRYLD-VRT-----PEEFSAGHATGA-I--N--VPYMYRVGSGMTKNLKFVEEVSTRFRKHDE 106 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~iiD-vR~-----~~e~~~ghIpgA-i--~--ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (151)
.+..+|..-+..+.+.++++-+ .|. ..+....+++.. . . .|.............+..+.+......++.
T Consensus 13 ~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 92 (229)
T PRK05576 13 DPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENAEEIAAEAEEGKN 92 (229)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4566777777777777777765 222 122333444432 1 1 121100000000000122222222345556
Q ss_pred EEEEeCCC----hhHHHHHHHHHHCCCCceeEccc--cH-HHHHhCCCCCC
Q 031899 107 IIVGCQSG----KRSMMAATDLLNAGFAGITDIAG--GF-AAWRQNGLPTE 150 (151)
Q Consensus 107 iv~~c~~g----~~a~~~~~~L~~~G~~~v~~l~G--G~-~~W~~~g~pv~ 150 (151)
|++.+.+. .........+.+.|+ .+.++.| .+ .++...|.|+.
T Consensus 93 V~~l~~GDP~~y~~~~~l~~~~~~~~~-~v~viPGiSs~~~a~a~~g~~l~ 142 (229)
T PRK05576 93 VAFITLGDPNLYSTFSHLLEYLKCHDI-EVETVPGISSFTAIASRAGVPLA 142 (229)
T ss_pred EEEEeCcCccccccHHHHHHHHHhCCC-CEEEeCChhHHHHHHHHcCCCcc
Confidence 66666432 234456667777777 5777765 12 24444566654
No 387
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.27 E-value=93 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCceeEccccHHHHH
Q 031899 117 SMMAATDLLNAGFAGITDIAGGFAAWR 143 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l~GG~~~W~ 143 (151)
..++...|++.|. +|+++.|||....
T Consensus 93 i~eLv~~L~~~~~-~v~liSGGF~~~i 118 (227)
T KOG1615|consen 93 IRELVSRLHARGT-QVYLISGGFRQLI 118 (227)
T ss_pred HHHHHHHHHHcCC-eEEEEcCChHHHH
Confidence 4568899999997 6999999987553
No 388
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=28.25 E-value=1.4e+02 Score=23.91 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=26.2
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHC---------CC-----CceeEccccHHHHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNA---------GF-----AGITDIAGGFAAWR 143 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~---------G~-----~~v~~l~GG~~~W~ 143 (151)
++-.-++||++|..|..+|-.|.+. |. +.+..+.|+|.+|.
T Consensus 101 ~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t 155 (431)
T TIGR03251 101 PALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRS 155 (431)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcc
Confidence 3335688999998877766555431 32 34666778776664
No 389
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=28.19 E-value=1.4e+02 Score=17.73 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=23.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.++ +++++.|..+..++..|.+.|...+.+++
T Consensus 23 ~~~-v~i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 23 GKT-VVVLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCE-EEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 344 45567788888889999888766776653
No 390
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.17 E-value=2e+02 Score=21.54 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=32.3
Q ss_pred CHHHHHHHHhccCCCCeEEEEeC--CChhHHHHHHHHHHCCCCceeEccccH
Q 031899 90 NLKFVEEVSTRFRKHDEIIVGCQ--SGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 90 ~~~~~~~~~~~~~~~~~iv~~c~--~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+++.+......+...+.|+++.. ++.-+..++..|...|. ++..+.+..
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~~ 166 (281)
T COG1737 116 DEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDTH 166 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCC-ceeEecchH
Confidence 44566666666777777888762 22445567778889998 566565543
No 391
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=28.17 E-value=1.7e+02 Score=21.11 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=22.6
Q ss_pred ccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
...++++|++.|+.+.+ ..+...|++.|+.
T Consensus 114 ~~~~~~~vL~~rg~~~r-~~l~~~L~~~G~~ 143 (240)
T PRK09189 114 ALAPTARLLYLAGRPRA-PVFEDRLAAAGIP 143 (240)
T ss_pred hcCCCCcEEEeccCccc-chhHHHHHhCCCe
Confidence 34567788888877665 4688899999974
No 392
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=28.14 E-value=1.4e+02 Score=21.91 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=33.9
Q ss_pred cCCCCeEEEEeC---CChhHHHHHHHHHHCCCCce--e-EccccHHHHHh----CCCCCC
Q 031899 101 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI--T-DIAGGFAAWRQ----NGLPTE 150 (151)
Q Consensus 101 ~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v--~-~l~GG~~~W~~----~g~pv~ 150 (151)
+.++++|+++++ +|.....+...+++.|.+-+ . +++-+..+|.. .|.|+.
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~ 232 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVD 232 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEE
Confidence 567889999986 67778788899999997522 2 34444445653 366653
No 393
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=28.05 E-value=1.1e+02 Score=21.89 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=7.2
Q ss_pred CCeEEEEeCCC
Q 031899 104 HDEIIVGCQSG 114 (151)
Q Consensus 104 ~~~iv~~c~~g 114 (151)
-.++++||.++
T Consensus 14 ~~~i~V~~gs~ 24 (205)
T COG1611 14 IRQIVVICGSA 24 (205)
T ss_pred cceEEEEEeCC
Confidence 45677777665
No 394
>PRK07402 precorrin-6B methylase; Provisional
Probab=27.99 E-value=2e+02 Score=19.93 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 140 (151)
...+......+.++..+++++.+-.....+...++..+..+..++.-+..
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVN 171 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhh
Confidence 35666666677778788777655444444555666655444333333333
No 395
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=27.96 E-value=1.5e+02 Score=25.21 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCeEEEEeCCC----hhHHHHHHHHHHCCCCceeEcccc---HHHHHhCCC
Q 031899 102 RKHDEIIVGCQSG----KRSMMAATDLLNAGFAGITDIAGG---FAAWRQNGL 147 (151)
Q Consensus 102 ~~~~~iv~~c~~g----~~a~~~~~~L~~~G~~~v~~l~GG---~~~W~~~g~ 147 (151)
..+..|+++|.+. ..+..++..|++.|-. ..+|.|- +.+|..+|.
T Consensus 544 ~sga~i~viCssD~~Y~~~a~~~~~al~~ag~~-~v~lAG~p~~~~~~~~aGv 595 (619)
T TIGR00642 544 KAGAQVAVLCSSDKVYAQQGLEVAKALKAAGAK-ALYLAGAFKEFGDDAAEAI 595 (619)
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHhCCCC-EEEEeCCCcchhhHHhcCC
Confidence 3467799999986 3466788899999985 4456653 334666654
No 396
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.95 E-value=1.1e+02 Score=25.30 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.||| -+.|.....+|+.|.+.|++ |-+|+
T Consensus 17 ~VIV-IGAGiaGLsAArqL~~~G~~-V~VLE 45 (501)
T KOG0029|consen 17 KVIV-IGAGLAGLSAARQLQDFGFD-VLVLE 45 (501)
T ss_pred cEEE-ECCcHHHHHHHHHHHHcCCc-eEEEe
Confidence 4444 47788888899999999995 77775
No 397
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=27.90 E-value=2.3e+02 Score=22.17 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 92 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 92 ~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+....+...+.+.++++++ +.|.-+..+|..|.+.|. +|.++.
T Consensus 132 ~da~~l~~~~~~~~~vvVi-GgG~ig~E~A~~l~~~g~-~Vtlv~ 174 (396)
T PRK09754 132 GDAARLREVLQPERSVVIV-GAGTIGLELAASATQRRC-KVTVIE 174 (396)
T ss_pred HHHHHHHHHhhcCCeEEEE-CCCHHHHHHHHHHHHcCC-eEEEEe
Confidence 3444444444556677776 556777788899999997 577664
No 398
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.87 E-value=1.3e+02 Score=24.05 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=25.1
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC-----CC---CceeEccccHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAW 142 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~-----G~---~~v~~l~GG~~~W 142 (151)
.+.+-.-|++|++|..+..+|-.|... |. .++..+.|+|.++
T Consensus 96 ~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 145 (422)
T PRK05630 96 TDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGD 145 (422)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 343334688899998777666555331 21 2465677777654
No 399
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=27.83 E-value=1.4e+02 Score=21.31 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCeEEEE---eCCChhHHHHHHHHHHCCC--CceeE
Q 031899 104 HDEIIVG---CQSGKRSMMAATDLLNAGF--AGITD 134 (151)
Q Consensus 104 ~~~iv~~---c~~g~~a~~~~~~L~~~G~--~~v~~ 134 (151)
++.|+++ +.+|.....+.+.|++.|. +++.+
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~ 156 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIII 156 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEE
Confidence 4667776 4689999999999999987 45543
No 400
>PRK12828 short chain dehydrogenase; Provisional
Probab=27.82 E-value=1.3e+02 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=17.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++.++|.+.+|.-...++..|.+.|++ |..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~-v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGAR-VALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCe-EEEE
Confidence 445666666665555566666666663 4433
No 401
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=27.80 E-value=1.5e+02 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=26.2
Q ss_pred eEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.|.+ .|-+.+..+.+||.+|.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 467889999777776666543 25456777788887765
No 402
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.66 E-value=1.2e+02 Score=16.92 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=28.0
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+...+..++.+..+.+..+.......+..+++..||+
T Consensus 16 ~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 16 TKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred HHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 4445556777888888877776666788899999996
No 403
>PRK05370 argininosuccinate synthase; Validated
Probab=27.63 E-value=1.4e+02 Score=24.26 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=16.3
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+.+++.++||+.-..|..++.+..+|++.|++
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~~e 37 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQKGAV 37 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhcCCe
Confidence 34455555444334444555555556555664
No 404
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.58 E-value=1.4e+02 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
..++++...+|..|..++..+.+.|++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~g~~ 38 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDAGTE 38 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHhCCC
Confidence 445666667777777777777777764
No 405
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=27.56 E-value=1.2e+02 Score=22.86 Aligned_cols=34 Identities=29% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
+.+|++ ++.|.-...++..|...|+.++.++|.-
T Consensus 30 ~s~VlV-vG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICV-VGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEE-ECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 444444 5777777789999999999888888754
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.49 E-value=1.3e+02 Score=17.34 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=6.4
Q ss_pred CChhHHHHHHHHHHCC
Q 031899 113 SGKRSMMAATDLLNAG 128 (151)
Q Consensus 113 ~g~~a~~~~~~L~~~G 128 (151)
+|.-+..+|..|...|
T Consensus 7 gG~ig~E~A~~l~~~g 22 (80)
T PF00070_consen 7 GGFIGIELAEALAELG 22 (80)
T ss_dssp SSHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhC
Confidence 3333334444444444
No 407
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.30 E-value=59 Score=20.90 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=12.0
Q ss_pred HHHHHHHHh-CC-CEEEecCC
Q 031899 44 VRVAHELLQ-AG-HRYLDVRT 62 (151)
Q Consensus 44 ~~~~~~~~~-~~-~~iiDvR~ 62 (151)
.+++.+++. .+ -+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 345555554 34 57999995
No 408
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=27.28 E-value=1.8e+02 Score=20.59 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=23.9
Q ss_pred ccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.+..+.+|.+...+|..|..++..+.+....++..+.
T Consensus 13 rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t 49 (255)
T PF00733_consen 13 RLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFT 49 (255)
T ss_dssp HCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEE
Confidence 3567888888888888888888888773334555443
No 409
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=27.20 E-value=1.1e+02 Score=24.39 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=26.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.|.+. |=+.+..+.|||.+|.
T Consensus 110 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 149 (428)
T PRK12389 110 EKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHS 149 (428)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCh
Confidence 4578899998887777666443 5445667788887764
No 410
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=27.17 E-value=1.4e+02 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred eEEEEeCCChhHHHHHHHHHH--CCCCceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 143 (151)
.+++++++|..+..+|-.|.+ .|-.++..+.|||.+|.
T Consensus 122 ~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t 161 (459)
T PRK06931 122 CLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMT 161 (459)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 466776899887776666543 35455767788887664
No 411
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=27.14 E-value=1.2e+02 Score=17.24 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHHHCCCCceeEcc
Q 031899 112 QSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 112 ~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
..|.....+|..|++.|+ +|.+++
T Consensus 3 GaG~sGl~aA~~L~~~g~-~v~v~E 26 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGY-RVTVFE 26 (68)
T ss_dssp S-SHHHHHHHHHHHHTTS-EEEEEE
T ss_pred eeCHHHHHHHHHHHHCCC-cEEEEe
Confidence 456677778889988898 688776
No 412
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=27.14 E-value=1.4e+02 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=26.3
Q ss_pred cCCCCeEEEEeCCChhHHHHHHHHHHC--------CCCceeEccccHHHHH
Q 031899 101 FRKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWR 143 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~ 143 (151)
.+.+-.-+++|.+|..+..++-.+... |-.++..+.|||.++.
T Consensus 101 ~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t 151 (427)
T TIGR00508 101 TPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDT 151 (427)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCcc
Confidence 333334678899997776655544331 2335667888887653
No 413
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=27.14 E-value=1.8e+02 Score=20.80 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=25.9
Q ss_pred hccCCCCeEEEEeCCChhHHHHHHHHHHCCCC-ceeEccccH
Q 031899 99 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGF 139 (151)
Q Consensus 99 ~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~ 139 (151)
..++++..|+.+-.+..++..+-..+++.|+. +|.++.|-.
T Consensus 65 ~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 65 EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 34566666666655666676777777888874 566666643
No 414
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.12 E-value=1.5e+02 Score=22.15 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
++++++ .+.|..+..++..|...|+.+|.+++-.
T Consensus 123 ~k~vlV-lGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILI-LGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEE-EcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 444444 4678788888999999998788877543
No 415
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=27.00 E-value=1.2e+02 Score=23.03 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=11.3
Q ss_pred CCeEEEEeCCC-hhHH
Q 031899 104 HDEIIVGCQSG-KRSM 118 (151)
Q Consensus 104 ~~~iv~~c~~g-~~a~ 118 (151)
..||||+|..| .|+.
T Consensus 229 ~~PIvVHCsaGvGRTG 244 (303)
T PHA02742 229 EPPILVHCSAGLDRAG 244 (303)
T ss_pred CCCeEEECCCCCchhH
Confidence 46999999977 4544
No 416
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=26.99 E-value=1.2e+02 Score=27.83 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=28.8
Q ss_pred CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEccccH
Q 031899 105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
...+|||++. ..+..++..|+..|+ ++..+.|++
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~-~a~~lhg~~ 363 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGV-KAVAYHATK 363 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCc-eEEEEeCCC
Confidence 4678889887 778899999999999 677888876
No 417
>PRK08328 hypothetical protein; Provisional
Probab=26.96 E-value=1.3e+02 Score=21.90 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=26.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+++|++ .+.|.-...++..|...|+.++.++|...
T Consensus 27 ~~~VlI-iG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAV-VGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 344444 46666677899999999999999888654
No 418
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=26.82 E-value=87 Score=21.69 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=35.3
Q ss_pred CEEEecCChhhHhc--CCCCCceeecc--ccccC--CC-CCCCHHHHHHHHh---ccCCCCeEEEEeCCC-hhHHHHH
Q 031899 55 HRYLDVRTPEEFSA--GHATGAINVPY--MYRVG--SG-MTKNLKFVEEVST---RFRKHDEIIVGCQSG-KRSMMAA 121 (151)
Q Consensus 55 ~~iiDvR~~~e~~~--ghIpgAi~ip~--~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~iv~~c~~g-~~a~~~~ 121 (151)
..+|-+++..++.. --++-..++++ ++... ++ ....+.-...... ..+...++++.|-.| .||..++
T Consensus 34 t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A 111 (172)
T COG5350 34 THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAA 111 (172)
T ss_pred ceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHH
Confidence 45666666554431 22333334443 22222 23 3444454444444 467889999999988 3555443
No 419
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=26.73 E-value=52 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=20.3
Q ss_pred cccCHHHHHHHHhCCCEEEecCChhhHhcC
Q 031899 40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAG 69 (151)
Q Consensus 40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~g 69 (151)
..|+.++..++-....++|=+|+.+.|..-
T Consensus 173 dsIPvq~a~~~G~~~ivVI~Trps~~~~~p 202 (292)
T COG4667 173 DSIPVKEAIRLGADKIVVIRTRPSDYYKTP 202 (292)
T ss_pred ccccchHHHHcCCceEEEEEechHHhccCC
Confidence 346777766665556788889976666543
No 420
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.70 E-value=1.3e+02 Score=17.96 Aligned_cols=16 Identities=19% Similarity=-0.085 Sum_probs=8.0
Q ss_pred HHHHHHHCCCCceeEcc
Q 031899 120 AATDLLNAGFAGITDIA 136 (151)
Q Consensus 120 ~~~~L~~~G~~~v~~l~ 136 (151)
+...++...+ ++.+++
T Consensus 35 ~~~~~~~~~~-d~iiid 50 (112)
T PF00072_consen 35 ALELLKKHPP-DLIIID 50 (112)
T ss_dssp HHHHHHHSTE-SEEEEE
T ss_pred HHHHhcccCc-eEEEEE
Confidence 3445555554 455554
No 421
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.64 E-value=1.7e+02 Score=18.40 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=20.8
Q ss_pred cCCCCeEEEEeCCCh--hHHHHHHHHHHCCCCceeEc
Q 031899 101 FRKHDEIIVGCQSGK--RSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 101 ~~~~~~iv~~c~~g~--~a~~~~~~L~~~G~~~v~~l 135 (151)
++++.-+|+++.+|. ....++..+++.|.+ +..+
T Consensus 45 ~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~-vi~i 80 (128)
T cd05014 45 VTPGDVVIAISNSGETDELLNLLPHLKRRGAP-IIAI 80 (128)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe-EEEE
Confidence 455666777776663 344567777777764 4433
No 422
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=26.63 E-value=1.2e+02 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+...||+. ..|.....+|..|++.|| +|.+|.
T Consensus 6 ~~~~viiv-GaGlaGL~AA~eL~kaG~-~v~ilE 37 (450)
T COG1231 6 KTADVIIV-GAGLAGLSAAYELKKAGY-QVQILE 37 (450)
T ss_pred CCCcEEEE-CCchHHHHHHHHHhhcCc-EEEEEe
Confidence 34445544 777778889999999999 477765
No 423
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=26.58 E-value=1e+02 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.5
Q ss_pred CCeEEEEeCCC-hhHH
Q 031899 104 HDEIIVGCQSG-KRSM 118 (151)
Q Consensus 104 ~~~iv~~c~~g-~~a~ 118 (151)
..||||+|..| .|+.
T Consensus 193 ~~pivVHC~~G~gRsg 208 (258)
T smart00194 193 TGPIVVHCSAGVGRTG 208 (258)
T ss_pred CCCEEEEeCCCCCccc
Confidence 67999999877 4544
No 424
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=26.53 E-value=2.4e+02 Score=20.95 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccc-c--------CCCCCCCHHHHHHHHhccCCCCeEEEEe
Q 031899 44 VRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYR-V--------GSGMTKNLKFVEEVSTRFRKHDEIIVGC 111 (151)
Q Consensus 44 ~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~iv~~c 111 (151)
.+.+++..+.+ .+++|+-...+ .+..|.+.-.. . -.+..++.+.++++++. +...|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~------g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~---G~~rViiG 104 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKA------GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDA---GVARVIIG 104 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccccc------CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHC---CCCEEEEe
Confidence 34455555555 67888865443 44455443110 0 12445565666666552 22233333
Q ss_pred CCC-hhHHHHHHHHHHCCCCcee
Q 031899 112 QSG-KRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 112 ~~g-~~a~~~~~~L~~~G~~~v~ 133 (151)
... ..-..+..++++.| +++.
T Consensus 105 t~av~~p~~v~~~~~~~g-~riv 126 (241)
T COG0106 105 TAAVKNPDLVKELCEEYG-DRIV 126 (241)
T ss_pred cceecCHHHHHHHHHHcC-CcEE
Confidence 333 34445666777777 5544
No 425
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=26.52 E-value=79 Score=25.42 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHH-HC-CC----Cc--eeEccccHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLL-NA-GF----AG--ITDIAGGFA 140 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~-~~-G~----~~--v~~l~GG~~ 140 (151)
.-.-|++|++|..|..+|-.+. +. +. ++ +.-+.|||.
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyH 159 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYH 159 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcC
Confidence 4456899999988877665443 22 22 23 445667663
No 426
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=26.37 E-value=92 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=27.8
Q ss_pred HHHHHhccCCCCeEEEEeC---CChhHHHHHHHHHHCCCC
Q 031899 94 VEEVSTRFRKHDEIIVGCQ---SGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~ 130 (151)
++-....+++++.++++++ +|.....+...+.+.|-+
T Consensus 112 ~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 112 FEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred eeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 4444456788889998876 677777788888998864
No 427
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=26.28 E-value=2.5e+02 Score=20.25 Aligned_cols=109 Identities=18% Similarity=0.082 Sum_probs=51.0
Q ss_pred CccccCHHHHHHHHhCCCEEEecCChhhHhcCCCC-CceeeccccccCCCCCCCHH-HHHHHHhccCCCCeEEEEeCC-C
Q 031899 38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHAT-GAINVPYMYRVGSGMTKNLK-FVEEVSTRFRKHDEIIVGCQS-G 114 (151)
Q Consensus 38 ~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIp-gAi~ip~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iv~~c~~-g 114 (151)
.+..+|...+..+.+.++++.+-+...+.. .+++ .+.-++...... ......+ ..+.....+..++.|++.+.. .
T Consensus 14 dp~~lT~~A~~~L~~advI~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~g~~V~~l~~GDP 91 (249)
T PRK06136 14 DPDLITLKGVRLLEQADVVLYDDLVSPEIL-AYAKPDAELIYVGKRAG-RHSTKQEEINRLLVDYARKGKVVVRLKGGDP 91 (249)
T ss_pred ChHHHHHHHHHHHhcCCEEEEcCCCCHHHH-hhCCCCCEEEeCCCcCC-CCCcCHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 456678887777777787777655333221 1222 111111110000 0001112 222333334456666655432 2
Q ss_pred ---hhHHHHHHHHHHCCCCceeEccc--cHH-HHHhCCCCC
Q 031899 115 ---KRSMMAATDLLNAGFAGITDIAG--GFA-AWRQNGLPT 149 (151)
Q Consensus 115 ---~~a~~~~~~L~~~G~~~v~~l~G--G~~-~W~~~g~pv 149 (151)
.........+++.|+ ++.++.| .+. +....|.|+
T Consensus 92 ~~ys~~~~l~~~l~~~~~-~veviPGISS~~aaaa~~g~~l 131 (249)
T PRK06136 92 FVFGRGGEELEALEAAGI-PYEVVPGITAAIAAAAYAGIPL 131 (249)
T ss_pred hhhhcHHHHHHHHHHCCC-CEEEEcCccHHHHHHHHcCCCc
Confidence 223345567777787 5777775 222 223346665
No 428
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.26 E-value=1.3e+02 Score=16.96 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=14.7
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHCCCC
Q 031899 106 EIIVGCQSG-KRSMMAATDLLNAGFA 130 (151)
Q Consensus 106 ~iv~~c~~g-~~a~~~~~~L~~~G~~ 130 (151)
+|++|+.++ ..+..+-..|.+.|++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 456666543 4455566667777754
No 429
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.23 E-value=2.5e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 89 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.+...++.+.. .+..+|+.|++|..+......+++.|++ |.+.|
T Consensus 115 l~~~~i~~~~~---~~~~LiItvD~Gi~~~e~i~~a~~~gid-vIVtD 158 (575)
T PRK11070 115 LSPEVVDQAHA---RGAQLIVTVDNGISSHAGVAHAHALGIP-VLVTD 158 (575)
T ss_pred CCHHHHHHHHh---cCCCEEEEEcCCcCCHHHHHHHHHCCCC-EEEEC
Confidence 34455555443 3456899999999999999999999984 55544
No 430
>PLN02583 cinnamoyl-CoA reductase
Probab=26.07 E-value=1.5e+02 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
.+.++|...+|.-...++..|.+.|| +|..+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~ 36 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-TVHAA 36 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEE
Confidence 45666666677777778888888898 46543
No 431
>COG1647 Esterase/lipase [General function prediction only]
Probab=26.07 E-value=1.3e+02 Score=22.27 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCCceeEc---ccc-HHHHHhCCCCC
Q 031899 117 SMMAATDLLNAGFAGITDI---AGG-FAAWRQNGLPT 149 (151)
Q Consensus 117 a~~~~~~L~~~G~~~v~~l---~GG-~~~W~~~g~pv 149 (151)
+..+.+.|++.||+.|++. -|| +..|.+..+|+
T Consensus 72 v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p~ 108 (243)
T COG1647 72 VEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYPP 108 (243)
T ss_pred HHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCCc
Confidence 4446667777777766643 144 45666655554
No 432
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=26.03 E-value=3.3e+02 Score=22.36 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHHHHHH-CCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLN-AGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~-~G~~~v~~l~GG~~~W~~~ 145 (151)
+...|.+++. .|. +|-++-..+..|..+
T Consensus 225 a~tiAEyfrd~~G~-~VLll~DslTR~A~A 253 (463)
T PRK09280 225 GLTMAEYFRDVEGQ-DVLLFIDNIFRFTQA 253 (463)
T ss_pred HHHHHHHHHHhcCC-ceEEEecchHHHHHH
Confidence 4457788888 997 788887889888765
No 433
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=25.99 E-value=1.7e+02 Score=21.92 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=20.1
Q ss_pred CCCCeEEEEeCCC-hhHH--HHHHHHHHCCC
Q 031899 102 RKHDEIIVGCQSG-KRSM--MAATDLLNAGF 129 (151)
Q Consensus 102 ~~~~~iv~~c~~g-~~a~--~~~~~L~~~G~ 129 (151)
.++..++++|..| .||+ .+|..++..|.
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 4688999999988 3544 46666666665
No 434
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=25.85 E-value=1.7e+02 Score=20.21 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=20.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++++++..+|.-+..++..|.+.|+ +|.++.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence 45666666667666667777777775 566543
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=25.84 E-value=1.2e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.+++++ .+.|..+..++..|...|..++.+++-
T Consensus 127 ~k~vlI-lGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 127 LERVVQ-LGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CCEEEE-ECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 345554 466667777888999999988888764
No 436
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=25.84 E-value=2e+02 Score=24.22 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=27.2
Q ss_pred HHHHHhccCCCCeEEEEeC---CCh-hHHHHHHHHHHCCCCcee
Q 031899 94 VEEVSTRFRKHDEIIVGCQ---SGK-RSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~---~g~-~a~~~~~~L~~~G~~~v~ 133 (151)
.+.+...+..+.+|++|.+ +|. .++.++..|++.|..++.
T Consensus 59 ~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~ 102 (575)
T PRK11070 59 VELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVD 102 (575)
T ss_pred HHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceE
Confidence 4444455677889999875 344 445678889999985554
No 437
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=25.80 E-value=67 Score=22.77 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=29.6
Q ss_pred cccccccccCccccCcccccCCccccCHHHHHHHHhCCCEEEecCChhhHhcCCC
Q 031899 17 SSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHA 71 (151)
Q Consensus 17 ~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghI 71 (151)
-|++.+|.++..... ...-..+.++.+.+.++++ +|+|+...-.+.|+
T Consensus 85 igP~p~W~dp~kIVs----mDPwGhlv~~~f~~~~~~G---~DiRPTIAvTkAh~ 132 (194)
T PF12471_consen 85 IGPHPQWSDPKKIVS----MDPWGHLVPEVFKDEIEEG---YDIRPTIAVTKAHM 132 (194)
T ss_pred CCCCCCcCCCCcEEE----eCCcccccHHHHHHHHHcC---CccCccceeecccc
Confidence 456666665422111 1112356778888888877 79999777666665
No 438
>PRK13766 Hef nuclease; Provisional
Probab=25.73 E-value=1.8e+02 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.++.+++|+|.+-..+..+...|...|+. +..+.|
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~-~~~~~g 397 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIK-AVRFVG 397 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCc-eEEEEc
Confidence 45778999999988898999999999985 444555
No 439
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=25.62 E-value=3e+02 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.2
Q ss_pred HHHHHHHHHHC-CCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLLNA-GFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~~~-G~~~v~~l~GG~~~W~~~ 145 (151)
+...|.+|++. |. +|-++-..+..|..+
T Consensus 150 a~~~AEyfr~~~g~-~Vl~~~Dsltr~a~A 178 (274)
T cd01133 150 GLTMAEYFRDEEGQ-DVLLFIDNIFRFTQA 178 (274)
T ss_pred HHHHHHHHHHhcCC-eEEEEEeChhHHHHH
Confidence 34567788877 97 677777788888665
No 440
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.58 E-value=1.9e+02 Score=19.29 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.++.++++.++......++.+|.+.|. .|...+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~ 59 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCD 59 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeC
Confidence 478889888888888889999999887 465554
No 441
>PHA02558 uvsW UvsW helicase; Provisional
Probab=25.48 E-value=1.1e+02 Score=25.07 Aligned_cols=39 Identities=10% Similarity=-0.076 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
.+.+++++|..-..+..++..|...|+ ++..+.|+++..
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~-~v~~i~G~~~~~ 381 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYD-KVYYVSGEVDTE 381 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCC-CEEEEeCCCCHH
Confidence 344555555544467788999999998 789999987543
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=25.44 E-value=1.4e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+.+|++ .+.|.-...++..|...|+.++.++|...
T Consensus 24 ~~~Vlv-vG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLI-VGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEE-ECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 344444 46666667899999999999998888754
No 443
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.40 E-value=2.1e+02 Score=18.93 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.4
Q ss_pred HHHHHHHCCCCcee
Q 031899 120 AATDLLNAGFAGIT 133 (151)
Q Consensus 120 ~~~~L~~~G~~~v~ 133 (151)
....|+++|++.++
T Consensus 100 ~~~~L~~~Gv~~vf 113 (128)
T cd02072 100 VEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHcCCCEEE
Confidence 45678889987665
No 444
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=25.40 E-value=1.5e+02 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=22.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++.+++. +.|.-+..++..|.+.|+++|.+++
T Consensus 126 ~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 126 GKKLTVI-GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4555554 5565555677888999998788764
No 445
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=25.24 E-value=1.4e+02 Score=21.05 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
+++|++. +.|.-...+++.|...|+.++.++|...-.+
T Consensus 21 ~s~VlIi-G~gglG~evak~La~~GVg~i~lvD~d~ve~ 58 (197)
T cd01492 21 SARILLI-GLKGLGAEIAKNLVLSGIGSLTILDDRTVTE 58 (197)
T ss_pred hCcEEEE-cCCHHHHHHHHHHHHcCCCEEEEEECCcccH
Confidence 4444444 5666777899999999999999998764433
No 446
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=25.24 E-value=1.4e+02 Score=21.01 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
++..++++...+.++..+-...+++|.+|+.++.+=.+.
T Consensus 71 p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 71 PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 567788888888899888889999999999999887665
No 447
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=25.21 E-value=1.9e+02 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
+......+.....+|++|..+..+..+.+.++++|+.
T Consensus 184 ~~~~l~~i~~~~~vii~~~~~~~~~~~l~q~~~~g~~ 220 (389)
T cd06352 184 LLEILQDIKRRSRIIIMCGSSEDVRELLLAAHDLGLT 220 (389)
T ss_pred HHHHHHHhhhcceEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3444444433337888888877777888889999984
No 448
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=25.18 E-value=43 Score=21.97 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.+.+..+.....++..+..||..+ .+-..|.+.|| +|.-..|
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~a~----~Vr~~L~~aGF-~v~~~~g 111 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSSAG----AVRRALQQAGF-EVEKVPG 111 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES--BH----HHHHHHHHCTE-EEEEEE-
T ss_pred HHHHHHHHHHhCCCcEEEEeechH----HHHHHHHHcCC-EEEEcCC
Confidence 456777766666777788877653 37778999999 4665543
No 449
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.12 E-value=2.6e+02 Score=19.87 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHhccCCCCeEEEEeCCCh--hHHHHHHHHHHCCCCceeEccc
Q 031899 95 EEVSTRFRKHDEIIVGCQSGK--RSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 95 ~~~~~~~~~~~~iv~~c~~g~--~a~~~~~~L~~~G~~~v~~l~G 137 (151)
..+.....++.-+++++.+|. ....++..+++.|.+ +..+.|
T Consensus 101 ~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~-vI~IT~ 144 (196)
T PRK10886 101 KQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT-IVALTG 144 (196)
T ss_pred HHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 333444567788888888884 345688899999985 555554
No 450
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=25.10 E-value=1.4e+02 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+.+|++ .+.|.-...++..|...|+.++.++|...
T Consensus 21 ~~~Vli-vG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLV-VGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 344444 46676777899999999999998887653
No 451
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.09 E-value=1.6e+02 Score=20.62 Aligned_cols=12 Identities=0% Similarity=0.224 Sum_probs=5.8
Q ss_pred CCeEEEEeCCCh
Q 031899 104 HDEIIVGCQSGK 115 (151)
Q Consensus 104 ~~~iv~~c~~g~ 115 (151)
+..|++.+++..
T Consensus 29 G~~V~~~~r~~~ 40 (238)
T PRK05786 29 GAQVCINSRNEN 40 (238)
T ss_pred CCEEEEEeCCHH
Confidence 345555555443
No 452
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=25.07 E-value=1.3e+02 Score=23.85 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=24.5
Q ss_pred eEEEEeCCChhHHHHHHHHHH-----CCC----CceeEccccHHHHH
Q 031899 106 EIIVGCQSGKRSMMAATDLLN-----AGF----AGITDIAGGFAAWR 143 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~-----~G~----~~v~~l~GG~~~W~ 143 (151)
.-+++|++|..+..+|-.|.+ .|. +.+..+.|||.+|.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t 145 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRT 145 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCcc
Confidence 468889999777766655533 242 23666778876664
No 453
>PRK14968 putative methyltransferase; Provisional
Probab=25.06 E-value=2.2e+02 Score=19.13 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899 93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 131 (151)
Q Consensus 93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~ 131 (151)
+++.....+.++..+++...+-..-..+...+.+.||+.
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 455555556677776666554433446778888999853
No 454
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=25.05 E-value=2.2e+02 Score=22.68 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
+++++|+ +.|.-+..++..|...|+.++.+++-.
T Consensus 180 ~~~VlVi-GaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 180 GKKALLI-GAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CCEEEEE-CChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4555554 678888888999999998788776543
No 455
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.01 E-value=2.3e+02 Score=19.27 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCC--hhHHHHHHHHHHCCCCceeEccc
Q 031899 91 LKFVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 91 ~~~~~~~~~~~~~~~~iv~~c~~g--~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
.+.++...+.+...++|+++..++ .-+..++..|...|. ++..+..
T Consensus 17 ~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~-~~~~~~~ 64 (179)
T TIGR03127 17 EEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGF-NVYVVGE 64 (179)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCC-eEEEeCC
Confidence 355666666666666776664432 334456667777887 5555543
No 456
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=25.00 E-value=1.3e+02 Score=26.04 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=34.2
Q ss_pred HhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 98 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 98 ~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
...++.++.+.++|++-.+|..+...|+..+. .+..+.+=+
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf 474 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRF 474 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEeccc
Confidence 33456788999999999999999999999997 788877644
No 457
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=24.96 E-value=1.6e+02 Score=22.89 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=26.4
Q ss_pred HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899 94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 131 (151)
Q Consensus 94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~ 131 (151)
+...+..+..+..||++|.....+..+...+++.|+..
T Consensus 192 ~~~~l~~ik~~~~vIi~~~~~~~~~~i~~qa~~~g~~~ 229 (399)
T cd06384 192 IIEIIQFIKQNGRIVYICGPLETFLEIMLQAQREGLTP 229 (399)
T ss_pred HHHHHHHHhhcccEEEEeCCchHHHHHHHHHHHcCCCC
Confidence 34444444345678888887777777888888999854
No 458
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=24.94 E-value=2.7e+02 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=23.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
+++++++ +.|..+..++..|.+.|..++++++
T Consensus 127 ~k~vlil-GaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 127 LDSVVQV-GAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 4555554 6666666678888899998888775
No 459
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.91 E-value=1.2e+02 Score=22.75 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
++.|+ +|+-|.-..+++.+|.+-|+.++.++|
T Consensus 30 ~~~V~-VvGiGGVGSw~veALaRsGig~itlID 61 (263)
T COG1179 30 QAHVC-VVGIGGVGSWAVEALARSGIGRITLID 61 (263)
T ss_pred hCcEE-EEecCchhHHHHHHHHHcCCCeEEEEe
Confidence 34444 456665566899999999998887765
No 460
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=24.91 E-value=1.4e+02 Score=23.95 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=24.2
Q ss_pred CeEEEEeCCCh-hHHH----HHHHHHHCCCCceeEccccHHH
Q 031899 105 DEIIVGCQSGK-RSMM----AATDLLNAGFAGITDIAGGFAA 141 (151)
Q Consensus 105 ~~iv~~c~~g~-~a~~----~~~~L~~~G~~~v~~l~GG~~~ 141 (151)
+++++.|+.|. .|+. .-+.+++.|.+++.+..-.++.
T Consensus 379 ~~iifaCDAGMGSSAMGAsilrkk~k~agl~~I~V~n~AIn~ 420 (472)
T COG2213 379 KKIIFACDAGMGSSAMGASILRKKLKNAGLNDISVTNYAINN 420 (472)
T ss_pred eEEEEEEcCCCChhhhhHHHHHHHHHhCCCCceeEeehhhhc
Confidence 47899999873 3333 4455667899877776544443
No 461
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.88 E-value=1.6e+02 Score=20.84 Aligned_cols=24 Identities=21% Similarity=0.021 Sum_probs=10.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCC
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
.++|...+|.-...++..|.+.|+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~ 30 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGA 30 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 344444444444444444444454
No 462
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=24.86 E-value=1.9e+02 Score=22.00 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=10.9
Q ss_pred CCeEEEEeCCC-hhH
Q 031899 104 HDEIIVGCQSG-KRS 117 (151)
Q Consensus 104 ~~~iv~~c~~g-~~a 117 (151)
..||||+|..| .|+
T Consensus 221 ~~PIVVHCSaGvGRT 235 (298)
T PHA02740 221 IAPIIIDCIDGISSS 235 (298)
T ss_pred CCCEEEECCCCCchh
Confidence 46999999987 443
No 463
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=24.83 E-value=1.5e+02 Score=20.98 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=24.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCcee
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~ 133 (151)
++++++++.+ +|.....+...|++.|.+.+.
T Consensus 139 ~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~ 172 (200)
T PRK02277 139 EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVA 172 (200)
T ss_pred CcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEE
Confidence 5788888875 678888899999999986543
No 464
>PRK14687 hypothetical protein; Provisional
Probab=24.80 E-value=1.2e+02 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=27.7
Q ss_pred CHHHHHHHHhccCCCCeEEEEeC---CChhHH-HHHHHHHHCCCC
Q 031899 90 NLKFVEEVSTRFRKHDEIIVGCQ---SGKRSM-MAATDLLNAGFA 130 (151)
Q Consensus 90 ~~~~~~~~~~~~~~~~~iv~~c~---~g~~a~-~~~~~L~~~G~~ 130 (151)
+.+.+..+.....+++++++... .|..+. .|+.+|+..||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lGr~gE~~Aa~~L~~kGy~ 50 (173)
T PRK14687 6 NSEMLSRLIDVMANDKPLMLTSPKQRQGGGFEQLACEFLQEQGLI 50 (173)
T ss_pred cHHHHHHHHHhhcCCCceecCCHHHHHhHHHHHHHHHHHHHCCCE
Confidence 44555666665557888888763 355444 577899999995
No 465
>PRK09492 treR trehalose repressor; Provisional
Probab=24.66 E-value=1.1e+02 Score=22.63 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 106 ~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
+-.++|.+...+..+...|++.|++++.++
T Consensus 233 ~~ai~~~~D~~A~g~~~al~~~g~~disvi 262 (315)
T PRK09492 233 TTALVCATDTLALGASKYLQEQGRDDIQVA 262 (315)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCceEEE
Confidence 456778888888888999999999877754
No 466
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.60 E-value=1.5e+02 Score=21.70 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=25.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
.+|++ .+.|.-...++..|...|+.++.++|..
T Consensus 12 ~~VlV-vG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAV-VGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34444 4666667789999999999999888865
No 467
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=24.46 E-value=1.3e+02 Score=25.60 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCeEEEEeCCChhHH-----HHHHHHHHCCCCceeEcc
Q 031899 104 HDEIIVGCQSGKRSM-----MAATDLLNAGFAGITDIA 136 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~-----~~~~~L~~~G~~~v~~l~ 136 (151)
.++++++|++|..++ ...+.|++.|.+++.+.+
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~~i~i~~ 415 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTN 415 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 457999999996555 455677777776555443
No 468
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=24.39 E-value=2.7e+02 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 108 IVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
|++++.|.....+|..|.+.|+ +|.+++
T Consensus 28 VvIVGgGpAGl~AA~~la~~G~-~V~liE 55 (257)
T PRK04176 28 VAIVGAGPSGLTAAYYLAKAGL-KVAVFE 55 (257)
T ss_pred EEEECccHHHHHHHHHHHhCCC-eEEEEe
Confidence 4446777777778888999998 577665
No 469
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=24.21 E-value=1.5e+02 Score=24.74 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHHhcc-CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899 92 KFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144 (151)
Q Consensus 92 ~~~~~~~~~~-~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 144 (151)
+-+.++...+ .....+|+++.+-..-..++......-...+..|.|+|..|.+
T Consensus 187 ~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 187 ESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 4444444443 1122788887776555556666655544578999999999965
No 470
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=24.19 E-value=1.5e+02 Score=21.70 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=26.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+++|+++ +.|.-...++..|...|+.++.++|...
T Consensus 32 ~~~Vlii-G~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVV-GLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4455544 5566677899999999999999888764
No 471
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.12 E-value=2.6e+02 Score=19.63 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=11.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHCCC
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNAGF 129 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~G~ 129 (151)
+.+++...++.-...++..|.+.|+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~ 32 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGA 32 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 3444444444444444444545554
No 472
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=24.07 E-value=1.3e+02 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=22.0
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++.+++++.-++.-.+.+...+...||.-+.++
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~ 34 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVF 34 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEE
Confidence 566788887776544455777788888644444
No 473
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=24.06 E-value=1e+02 Score=24.00 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=24.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHCCCCceeEcc--ccHHHHHh
Q 031899 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA--GGFAAWRQ 144 (151)
Q Consensus 105 ~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~--GG~~~W~~ 144 (151)
+.+|+.|..|.......-+|++.||+-+..+. |--+.|.+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ~edfe~ 47 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQKEDFEE 47 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccchhhHHH
Confidence 45667777775544555567779998666654 33455544
No 474
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.05 E-value=1.6e+02 Score=25.05 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=20.3
Q ss_pred CCCCeEEEEeCCChhH-H----HHHHHHHHCCCC
Q 031899 102 RKHDEIIVGCQSGKRS-M----MAATDLLNAGFA 130 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a-~----~~~~~L~~~G~~ 130 (151)
.+..+|++.|++|..+ . .+-+.|++.|++
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~ 537 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP 537 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCC
Confidence 4556899999999543 3 344567889984
No 475
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.96 E-value=1.5e+02 Score=16.65 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=23.0
Q ss_pred ccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 130 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~ 130 (151)
.+..+..+.+..+.......+..++++.||+
T Consensus 21 ~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~ 51 (67)
T cd03421 21 ELEAGGEIEVLVDNEVAKENVSRFAESRGYE 51 (67)
T ss_pred hcCCCCEEEEEEcChhHHHHHHHHHHHcCCE
Confidence 4556667777777666666788889999995
No 476
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=23.92 E-value=1.1e+02 Score=22.04 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHCCCCceeEccc-cHHHHHh
Q 031899 115 KRSMMAATDLLNAGFAGITDIAG-GFAAWRQ 144 (151)
Q Consensus 115 ~~a~~~~~~L~~~G~~~v~~l~G-G~~~W~~ 144 (151)
..+..+...|...|+.||.+..| |..+|..
T Consensus 108 ~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 108 ELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 34445556677777777775543 5556644
No 477
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.81 E-value=2.2e+02 Score=20.65 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeE--ccccHHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD--IAGGFAA 141 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~--l~GG~~~ 141 (151)
++.+++++..........++..+..+|+..|+- =.||..+
T Consensus 65 ~~~~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs~Kgg~~A 106 (214)
T COG2121 65 PKGKKIYAMVSPSRDGELIARLLEKFGLRVIRGSSNKGGISA 106 (214)
T ss_pred cCCCcEEEEEcCCcCHHHHHHHHHHcCceEEeccCCcchHHH
Confidence 344455555554455667777788888766552 2355544
No 478
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=23.76 E-value=1e+02 Score=26.73 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHC--------CCCceeEccccHH
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFA 140 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~ 140 (151)
..+.++++||++-..+..++..|++. |. ++..+.||+.
T Consensus 269 ~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~-~v~~~hgg~~ 314 (742)
T TIGR03817 269 AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAE-RVAAYRAGYL 314 (742)
T ss_pred HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcccccc-chhheecCCC
Confidence 44678899999988888888877653 33 5667788864
No 479
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.72 E-value=1.8e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=15.2
Q ss_pred CCCeEEEEeCCChhHHH-HHHHHHHC
Q 031899 103 KHDEIIVGCQSGKRSMM-AATDLLNA 127 (151)
Q Consensus 103 ~~~~iv~~c~~g~~a~~-~~~~L~~~ 127 (151)
.+.+++|..|++.++.. .+..|+..
T Consensus 39 ~g~~~iflTNn~~~s~~~~~~~L~~~ 64 (269)
T COG0647 39 AGKPVIFLTNNSTRSREVVAARLSSL 64 (269)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 45667777776665555 55566553
No 480
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.71 E-value=2.4e+02 Score=20.33 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHCCCCcee---Ecc---ccHHHHHhCCCCC
Q 031899 102 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPT 149 (151)
Q Consensus 102 ~~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~pv 149 (151)
.++++|+++.+ +|.....++..+++.|.+-+. +++ |+-....+.|.|+
T Consensus 110 ~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~ 166 (201)
T COG0461 110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKL 166 (201)
T ss_pred CCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCce
Confidence 46777887765 688888999999999985222 333 3444555567654
No 481
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.68 E-value=1.6e+02 Score=20.71 Aligned_cols=8 Identities=38% Similarity=0.243 Sum_probs=3.7
Q ss_pred eEEEEeCC
Q 031899 106 EIIVGCQS 113 (151)
Q Consensus 106 ~iv~~c~~ 113 (151)
.|++.+++
T Consensus 32 ~V~~~~r~ 39 (251)
T PRK12826 32 EVIVVDIC 39 (251)
T ss_pred EEEEEeCC
Confidence 44444444
No 482
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.60 E-value=1.7e+02 Score=18.96 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=23.0
Q ss_pred ccCCCCeEEEEeCCChh---HHHHHHHHHHCCCCceeEcc
Q 031899 100 RFRKHDEIIVGCQSGKR---SMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 100 ~~~~~~~iv~~c~~g~~---a~~~~~~L~~~G~~~v~~l~ 136 (151)
.++++..+|+++.+|.. ...++..+++.|. ++..+.
T Consensus 58 ~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~-~vi~it 96 (153)
T cd05009 58 LVDEGTPVIFLAPEDRLEEKLESLIKEVKARGA-KVIVIT 96 (153)
T ss_pred hccCCCcEEEEecCChhHHHHHHHHHHHHHcCC-EEEEEe
Confidence 35667778888766642 4457777788776 444443
No 483
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=23.59 E-value=1.6e+02 Score=20.79 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=25.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+.+|+++ +.|.-...++..|...|+.++.++|...
T Consensus 19 ~s~Vlvi-G~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLII-GAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3455554 5555666899999999999999988764
No 484
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.55 E-value=1.7e+02 Score=22.69 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
..+++|+|...+|.-...++..|.+.|| +|..++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~ 52 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASD 52 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEE
Confidence 3567788888889888889999999998 466554
No 485
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.46 E-value=1.4e+02 Score=16.10 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=12.6
Q ss_pred EEEEeCCC-hhHHHHHHHHHHCCC
Q 031899 107 IIVGCQSG-KRSMMAATDLLNAGF 129 (151)
Q Consensus 107 iv~~c~~g-~~a~~~~~~L~~~G~ 129 (151)
|++|+..+ ..+..+...|.+.|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i 25 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGI 25 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC
Confidence 45555433 445555566666665
No 486
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=23.43 E-value=1.8e+02 Score=20.74 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=16.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l 135 (151)
++.+++...++.-...++..|.+.|+ +|.++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-EVILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-EEEEE
Confidence 34455555555445555666666666 34433
No 487
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=23.35 E-value=1.7e+02 Score=20.59 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCCCCcee
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 133 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G~~~v~ 133 (151)
++++|+++.+ +|.....+...|+..|.+.++
T Consensus 96 ~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~ 129 (189)
T PLN02238 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 (189)
T ss_pred CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEE
Confidence 5788888865 677777888999999987654
No 488
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=23.34 E-value=3.4e+02 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHH-HCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLL-NAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~-~~G~~~v~~l~GG~~~W~~~ 145 (151)
+..+|.+++ ..|. +|-++-..+..|..+
T Consensus 227 a~tiAEyfr~d~G~-~VLli~DslTR~A~A 255 (460)
T PRK04196 227 ALTAAEYLAFEKGM-HVLVILTDMTNYCEA 255 (460)
T ss_pred HHHHHHHHHHhcCC-cEEEEEcChHHHHHH
Confidence 445677888 6897 687777788888665
No 489
>PRK07413 hypothetical protein; Validated
Probab=23.32 E-value=1.9e+02 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCC--hhHHHHHHHHHHCCCC-------cee---Ecccc
Q 031899 103 KHDEIIVGCQSG--KRSMMAATDLLNAGFA-------GIT---DIAGG 138 (151)
Q Consensus 103 ~~~~iv~~c~~g--~~a~~~~~~L~~~G~~-------~v~---~l~GG 138 (151)
.+..|.+||++| ..++.+-..|+.+|+. +|. .++|+
T Consensus 199 ~~g~i~VYTG~GKGKTTAAlGlAlRA~G~G~~~~~~~rV~ivQFlKg~ 246 (382)
T PRK07413 199 SSGGIEIYTGEGKGKSTSALGKALQAIGRGISQDKSHRVLILQWLKGG 246 (382)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHhcCCCCcccCceEEEEEECCCC
Confidence 456799999876 5566677888998876 454 56777
No 490
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=23.30 E-value=1.9e+02 Score=19.95 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHCC-CCcee
Q 031899 103 KHDEIIVGCQ---SGKRSMMAATDLLNAG-FAGIT 133 (151)
Q Consensus 103 ~~~~iv~~c~---~g~~a~~~~~~L~~~G-~~~v~ 133 (151)
.++.++++.+ +|.....++..|++.| -..++
T Consensus 94 ~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~ 128 (176)
T PRK05205 94 EGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQ 128 (176)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEE
Confidence 4677888764 7888888999999998 44443
No 491
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.23 E-value=2.2e+02 Score=19.02 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHH
Q 031899 104 HDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAW 142 (151)
Q Consensus 104 ~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W 142 (151)
..+.|+.|++|. ........|+..|+ +.+|+......
T Consensus 61 ~~~~VIa~GGG~~~~~~~~~~L~~~g~--vI~L~~~~~~l 98 (158)
T PF01202_consen 61 ENNCVIACGGGIVLKEENRELLKENGL--VIYLDADPEEL 98 (158)
T ss_dssp SSSEEEEE-TTGGGSHHHHHHHHHHSE--EEEEE--HHHH
T ss_pred cCcEEEeCCCCCcCcHHHHHHHHhCCE--EEEEeCCHHHH
Confidence 338888898884 34456677777775 66677766544
No 492
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.22 E-value=3.9e+02 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHCCCCceeEcccc
Q 031899 113 SGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 113 ~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
+|.....++..|...|+ +|.++.|.
T Consensus 213 SG~~G~aiA~~l~~~Ga-~V~~v~~~ 237 (399)
T PRK05579 213 SGKMGYALARAAARRGA-DVTLVSGP 237 (399)
T ss_pred cchHHHHHHHHHHHCCC-EEEEeCCC
Confidence 56667789999999998 57777654
No 493
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.16 E-value=2.3e+02 Score=18.72 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEcc
Q 031899 102 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDIA 136 (151)
Q Consensus 102 ~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l~ 136 (151)
.++.+|++.++.. ..-..+...+++.|+.++.+..
T Consensus 97 ~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 97 KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4567788888766 3445677788999999887654
No 494
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=23.09 E-value=2.7e+02 Score=20.02 Aligned_cols=30 Identities=7% Similarity=0.128 Sum_probs=18.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 138 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 138 (151)
.+-+++-|+.|..+..+ .+.|+ +|.-++-.
T Consensus 39 ~rvL~~gCG~G~da~~L----A~~G~-~V~avD~s 68 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWL----AEQGH-EVLGVELS 68 (218)
T ss_pred CeEEEeCCCChHhHHHH----HhCCC-eEEEEccC
Confidence 45667778888655433 45788 46666544
No 495
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=22.97 E-value=1.5e+02 Score=23.46 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=26.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139 (151)
Q Consensus 104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 139 (151)
+.+|+ +++.|.-...++..|...|+.++.++|...
T Consensus 42 ~~~Vl-viG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVL-VIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEE-EECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 33444 456666777899999999999999888753
No 496
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=22.95 E-value=2.4e+02 Score=19.61 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=23.8
Q ss_pred CCCeEEEEeCC--ChhHHHHHHHHHHCCCC--ceeEccc
Q 031899 103 KHDEIIVGCQS--GKRSMMAATDLLNAGFA--GITDIAG 137 (151)
Q Consensus 103 ~~~~iv~~c~~--g~~a~~~~~~L~~~G~~--~v~~l~G 137 (151)
++.|+++..-| |.-|..+|..|.+.|++ .+.++++
T Consensus 64 ~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 44487777544 56788899999999984 3445664
No 497
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=22.91 E-value=3.3e+02 Score=22.28 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHH-HCCCCceeEccccHHHHHhC
Q 031899 117 SMMAATDLL-NAGFAGITDIAGGFAAWRQN 145 (151)
Q Consensus 117 a~~~~~~L~-~~G~~~v~~l~GG~~~W~~~ 145 (151)
+..+|.+++ +.|. +|-++-..+..|..+
T Consensus 225 a~tiAEyfr~d~G~-~VLli~DslTR~A~A 253 (458)
T TIGR01041 225 ALTAAEYLAFEKDM-HVLVILTDMTNYCEA 253 (458)
T ss_pred HHHHHHHHHHccCC-cEEEEEcChhHHHHH
Confidence 345777888 6897 688777778888665
No 498
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=22.87 E-value=1.9e+02 Score=25.99 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHhccCCCCeEEEEeCCChhHHHHHHHHHHC--CCCceeEccccHH
Q 031899 97 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFA 140 (151)
Q Consensus 97 ~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~ 140 (151)
....+..+..++++|++-..+..++..|+.. ++ ++..+.|++.
T Consensus 653 i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~-~v~~lHG~m~ 697 (926)
T TIGR00580 653 IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEA-RIAIAHGQMT 697 (926)
T ss_pred HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCC-eEEEecCCCC
Confidence 3344556778899999888888888999875 55 6888999874
No 499
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=22.84 E-value=1.5e+02 Score=22.18 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137 (151)
Q Consensus 102 ~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G 137 (151)
+.+++++++ +.|..+..++..|.+.|..++.+++-
T Consensus 120 ~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 120 PPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 334455554 56666667888899999988887653
No 500
>PRK02106 choline dehydrogenase; Validated
Probab=22.74 E-value=1.4e+02 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=22.4
Q ss_pred EEeCCChhHHHHHHHHHH-CCCCceeEcccc
Q 031899 109 VGCQSGKRSMMAATDLLN-AGFAGITDIAGG 138 (151)
Q Consensus 109 ~~c~~g~~a~~~~~~L~~-~G~~~v~~l~GG 138 (151)
++.++|.....+|..|.+ .|+ +|.+|+.|
T Consensus 9 iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG 38 (560)
T PRK02106 9 IIIGAGSAGCVLANRLSEDPDV-SVLLLEAG 38 (560)
T ss_pred EEECCcHHHHHHHHHHHhCCCC-eEEEecCC
Confidence 345788888888888988 787 58888766
Done!