Query 031900
Match_columns 151
No_of_seqs 122 out of 1110
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 4.1E-24 9E-29 149.6 11.5 90 22-111 11-100 (100)
2 KOG0014 MADS box transcription 97.0 0.00022 4.7E-09 54.5 1.0 70 30-99 114-188 (195)
3 PF06005 DUF904: Protein of un 95.7 0.14 3E-06 33.7 8.1 48 57-109 1-48 (72)
4 COG3074 Uncharacterized protei 89.9 3.9 8.4E-05 26.9 7.5 47 57-108 1-47 (79)
5 PRK15422 septal ring assembly 89.7 3 6.5E-05 27.9 7.0 42 57-103 1-42 (79)
6 PF06156 DUF972: Protein of un 88.4 4.6 0.0001 28.5 7.8 50 59-113 7-56 (107)
7 PRK13169 DNA replication intia 87.5 5.7 0.00012 28.2 7.8 49 59-112 7-55 (110)
8 PF06698 DUF1192: Protein of u 86.3 1.4 3E-05 27.9 3.7 30 48-77 12-41 (59)
9 cd07429 Cby_like Chibby, a nuc 84.1 2 4.4E-05 30.4 4.1 25 87-111 73-97 (108)
10 PF01166 TSC22: TSC-22/dip/bun 84.0 3.2 7E-05 26.2 4.5 29 81-109 16-44 (59)
11 smart00338 BRLZ basic region l 80.0 10 0.00022 23.7 6.0 39 71-113 15-53 (65)
12 PF07716 bZIP_2: Basic region 78.9 12 0.00026 22.7 6.1 38 71-112 14-51 (54)
13 PF00170 bZIP_1: bZIP transcri 78.7 13 0.00028 23.2 6.1 38 71-112 15-52 (64)
14 COG2433 Uncharacterized conser 76.6 37 0.0008 31.1 10.2 73 32-113 431-508 (652)
15 smart00787 Spc7 Spc7 kinetocho 76.2 44 0.00096 27.8 11.1 78 32-114 181-260 (312)
16 KOG1962 B-cell receptor-associ 75.9 24 0.00053 28.0 8.1 77 34-110 131-210 (216)
17 PF07106 TBPIP: Tat binding pr 74.2 21 0.00045 26.6 7.2 48 32-80 118-165 (169)
18 PF08317 Spc7: Spc7 kinetochor 74.0 50 0.0011 27.4 11.6 77 33-114 187-265 (325)
19 KOG4797 Transcriptional regula 73.4 20 0.00044 25.5 6.4 41 65-108 46-89 (123)
20 KOG4797 Transcriptional regula 72.5 12 0.00025 26.7 5.0 32 76-108 65-96 (123)
21 COG4467 Regulator of replicati 72.2 28 0.00062 24.7 6.9 48 59-111 7-54 (114)
22 PF10504 DUF2452: Protein of u 69.7 35 0.00077 25.8 7.4 45 58-102 28-75 (159)
23 PF06156 DUF972: Protein of un 68.7 38 0.00082 23.8 7.0 42 72-114 9-50 (107)
24 TIGR02338 gimC_beta prefoldin, 68.6 36 0.00079 23.6 7.1 46 65-111 61-106 (110)
25 TIGR02449 conserved hypothetic 67.2 31 0.00067 22.2 7.6 44 61-109 1-44 (65)
26 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.2 48 0.0011 23.8 10.3 31 82-112 101-131 (132)
27 PF10211 Ax_dynein_light: Axon 65.2 61 0.0013 24.9 9.3 12 2-13 94-105 (189)
28 PRK10884 SH3 domain-containing 62.8 65 0.0014 25.2 8.0 73 31-108 94-168 (206)
29 cd00632 Prefoldin_beta Prefold 61.5 50 0.0011 22.6 8.0 46 66-112 58-103 (105)
30 PF09789 DUF2353: Uncharacteri 60.2 1E+02 0.0022 26.0 9.1 46 68-114 69-114 (319)
31 PF14645 Chibby: Chibby family 59.6 18 0.00039 25.8 4.0 25 86-110 71-95 (116)
32 PRK10884 SH3 domain-containing 56.2 96 0.0021 24.3 10.0 11 34-44 90-100 (206)
33 PF13758 Prefoldin_3: Prefoldi 56.1 47 0.001 23.2 5.5 39 25-63 7-56 (99)
34 PF06005 DUF904: Protein of un 55.4 56 0.0012 21.3 5.7 33 79-111 11-43 (72)
35 PF05529 Bap31: B-cell recepto 55.3 89 0.0019 23.6 7.8 55 59-113 124-188 (192)
36 PRK00888 ftsB cell division pr 52.5 55 0.0012 22.8 5.5 28 85-112 33-60 (105)
37 KOG0930 Guanine nucleotide exc 50.9 60 0.0013 27.2 6.1 43 54-105 8-50 (395)
38 PF02151 UVR: UvrB/uvrC motif; 49.8 44 0.00096 18.5 4.4 33 61-93 3-35 (36)
39 KOG0709 CREB/ATF family transc 47.9 34 0.00074 30.2 4.5 60 55-114 232-314 (472)
40 KOG2751 Beclin-like protein [S 47.8 1.8E+02 0.0039 25.6 8.8 74 1-88 155-228 (447)
41 smart00340 HALZ homeobox assoc 47.8 47 0.001 19.6 3.7 26 89-114 8-33 (44)
42 PF15243 ANAPC15: Anaphase-pro 47.2 25 0.00054 24.2 2.9 19 60-78 28-46 (92)
43 PRK13169 DNA replication intia 47.1 1E+02 0.0022 21.8 7.0 35 80-114 16-50 (110)
44 PF04880 NUDE_C: NUDE protein, 46.7 44 0.00096 25.4 4.5 43 62-109 2-47 (166)
45 PRK09343 prefoldin subunit bet 45.6 1.1E+02 0.0023 21.7 7.1 43 69-112 69-111 (121)
46 PF04849 HAP1_N: HAP1 N-termin 44.4 36 0.00077 28.5 4.0 54 60-113 97-187 (306)
47 PF10226 DUF2216: Uncharacteri 43.8 1.5E+02 0.0033 23.1 7.1 17 64-80 45-61 (195)
48 PRK13729 conjugal transfer pil 42.8 1E+02 0.0023 27.3 6.8 44 63-111 79-122 (475)
49 TIGR02449 conserved hypothetic 42.8 90 0.002 20.0 4.9 30 84-113 5-34 (65)
50 KOG3119 Basic region leucine z 42.6 73 0.0016 25.9 5.5 26 89-114 218-243 (269)
51 PF04977 DivIC: Septum formati 41.5 89 0.0019 19.6 5.4 29 84-112 22-50 (80)
52 PF03980 Nnf1: Nnf1 ; InterPr 39.8 1.2E+02 0.0026 20.7 5.7 46 54-112 61-106 (109)
53 PF15058 Speriolin_N: Sperioli 38.9 76 0.0017 24.9 4.8 34 80-114 13-46 (200)
54 PF08172 CASP_C: CASP C termin 36.7 1.9E+02 0.0042 23.2 7.1 29 86-114 107-135 (248)
55 PRK11637 AmiB activator; Provi 35.4 2.9E+02 0.0062 23.7 11.9 72 29-109 53-126 (428)
56 KOG4643 Uncharacterized coiled 35.2 2.9E+02 0.0063 27.2 8.7 56 58-113 234-291 (1195)
57 TIGR02209 ftsL_broad cell divi 35.1 1.2E+02 0.0027 19.4 5.3 33 82-114 27-59 (85)
58 PHA03155 hypothetical protein; 35.0 1.7E+02 0.0037 21.0 8.5 57 23-79 8-64 (115)
59 smart00338 BRLZ basic region l 33.3 1.2E+02 0.0026 18.7 5.2 29 81-109 35-63 (65)
60 PF07558 Shugoshin_N: Shugoshi 32.7 63 0.0014 19.1 2.8 31 80-110 15-45 (46)
61 PF04999 FtsL: Cell division p 32.6 1.5E+02 0.0033 19.7 5.3 34 81-114 37-70 (97)
62 PF12537 DUF3735: Protein of u 32.4 85 0.0018 20.2 3.6 25 59-83 47-71 (72)
63 PF10224 DUF2205: Predicted co 31.8 1.6E+02 0.0034 19.7 4.9 30 85-114 36-65 (80)
64 PF11629 Mst1_SARAH: C termina 31.4 87 0.0019 19.0 3.2 24 54-77 5-32 (49)
65 PF04899 MbeD_MobD: MbeD/MobD 31.4 1.5E+02 0.0033 19.2 7.6 48 64-111 3-53 (70)
66 PF11365 DUF3166: Protein of u 31.3 1.5E+02 0.0032 20.6 4.8 33 82-114 11-43 (96)
67 PHA03155 hypothetical protein; 29.7 92 0.002 22.3 3.6 24 88-111 10-33 (115)
68 PRK09413 IS2 repressor TnpA; R 29.4 2E+02 0.0043 20.1 7.0 28 83-110 75-102 (121)
69 KOG4343 bZIP transcription fac 29.4 1.3E+02 0.0027 27.5 5.1 39 76-114 296-337 (655)
70 PF06937 EURL: EURL protein; 28.5 2.9E+02 0.0062 22.9 6.7 41 42-82 204-244 (285)
71 PF15397 DUF4618: Domain of un 28.0 3.3E+02 0.0072 22.2 8.9 37 78-114 185-221 (258)
72 COG4467 Regulator of replicati 27.8 1.5E+02 0.0033 21.1 4.4 31 84-114 20-50 (114)
73 TIGR00012 L29 ribosomal protei 27.3 1.2E+02 0.0025 18.5 3.4 27 53-79 1-27 (55)
74 TIGR02894 DNA_bind_RsfA transc 26.6 2.9E+02 0.0062 21.0 11.5 58 54-111 77-136 (161)
75 KOG3584 cAMP response element 26.4 1.8E+02 0.0038 24.5 5.2 42 67-113 298-339 (348)
76 KOG0971 Microtubule-associated 26.2 6.4E+02 0.014 24.8 12.5 84 29-113 331-430 (1243)
77 PF09798 LCD1: DNA damage chec 26.1 4.4E+02 0.0095 24.5 8.2 52 61-112 5-59 (654)
78 KOG0837 Transcriptional activa 25.8 3E+02 0.0066 22.6 6.4 48 58-109 200-250 (279)
79 PF04508 Pox_A_type_inc: Viral 25.6 1.1E+02 0.0023 15.7 2.5 15 31-45 2-16 (23)
80 PF14584 DUF4446: Protein of u 25.5 2.2E+02 0.0047 21.2 5.2 45 35-81 21-67 (151)
81 KOG4005 Transcription factor X 24.7 2.8E+02 0.0061 22.6 5.9 54 54-108 61-119 (292)
82 PF04111 APG6: Autophagy prote 24.6 4.1E+02 0.0088 22.0 10.9 19 60-78 64-82 (314)
83 COG0216 PrfA Protein chain rel 24.4 4.6E+02 0.0099 22.5 9.0 89 2-105 10-102 (363)
84 PF07106 TBPIP: Tat binding pr 24.2 3E+02 0.0064 20.3 7.2 63 52-114 64-137 (169)
85 PRK15422 septal ring assembly 23.9 2.3E+02 0.005 18.9 5.1 32 80-111 12-43 (79)
86 TIGR03752 conj_TIGR03752 integ 23.8 5.3E+02 0.011 23.0 10.2 71 28-111 71-141 (472)
87 KOG3684 Ca2+-activated K+ chan 23.4 5.1E+02 0.011 23.1 7.7 61 38-102 404-464 (489)
88 KOG0728 26S proteasome regulat 23.0 2E+02 0.0044 24.0 5.0 25 84-108 43-67 (404)
89 PF14282 FlxA: FlxA-like prote 23.0 2.6E+02 0.0057 19.3 7.6 56 30-102 19-74 (106)
90 PF12718 Tropomyosin_1: Tropom 22.8 3.1E+02 0.0067 20.0 7.6 53 61-113 81-135 (143)
91 PF07498 Rho_N: Rho terminatio 22.3 25 0.00054 20.4 -0.3 33 53-86 1-33 (43)
92 KOG3366 Mitochondrial F1F0-ATP 22.3 3.7E+02 0.0079 20.6 6.1 14 58-71 110-123 (172)
93 PRK14127 cell division protein 22.1 2.7E+02 0.0058 19.6 4.9 28 87-114 38-65 (109)
94 cd08888 SRPBCC_PITPNA-B_like L 22.0 1.1E+02 0.0024 24.9 3.3 40 39-78 217-258 (258)
95 PF02183 HALZ: Homeobox associ 21.9 1.8E+02 0.004 17.0 4.8 31 83-113 9-39 (45)
96 PF08781 DP: Transcription fac 21.7 3.4E+02 0.0074 20.1 7.7 47 60-108 1-47 (142)
97 KOG0971 Microtubule-associated 21.5 7.9E+02 0.017 24.2 9.7 49 62-111 1003-1051(1243)
98 PRK09039 hypothetical protein; 21.3 4.9E+02 0.011 21.8 9.3 38 29-82 136-173 (343)
99 PF01093 Clusterin: Clusterin; 21.1 3.9E+02 0.0085 23.5 6.6 15 63-77 12-26 (436)
100 PRK13923 putative spore coat p 21.0 3.7E+02 0.0081 20.5 5.8 25 85-109 110-134 (170)
101 PF14723 SSFA2_C: Sperm-specif 21.0 1.1E+02 0.0023 23.7 2.8 19 60-78 159-177 (179)
102 PF03250 Tropomodulin: Tropomo 21.0 63 0.0014 24.2 1.5 17 54-70 21-37 (147)
103 KOG0652 26S proteasome regulat 20.9 3.4E+02 0.0073 22.9 5.9 42 70-112 19-60 (424)
104 TIGR01950 SoxR redox-sensitive 20.5 3.4E+02 0.0074 19.7 5.9 55 56-110 57-111 (142)
105 PHA02109 hypothetical protein 20.5 2.3E+02 0.0051 22.0 4.6 39 36-77 170-210 (233)
106 cd04769 HTH_MerR2 Helix-Turn-H 20.3 3E+02 0.0066 18.9 6.1 55 56-110 56-110 (116)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.91 E-value=4.1e-24 Score=149.55 Aligned_cols=90 Identities=37% Similarity=0.517 Sum_probs=86.3
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE 101 (151)
Q Consensus 22 ~~~~q~~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~ee 101 (151)
....+.+..++++|+.+++.|+..+|||+|+||++||++||+.||++|+.||.+||+||+++|+++|..|++|++.+.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 031900 102 NLRLKQHETG 111 (151)
Q Consensus 102 N~~L~~k~~~ 111 (151)
|..|+.++++
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.05 E-value=0.00022 Score=54.51 Aligned_cols=70 Identities=33% Similarity=0.370 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHH---HHhhcccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 031900 30 STYAILSKEMADRT---RELRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLT 99 (151)
Q Consensus 30 ~e~~~l~~e~~~L~---~~~R~l~GEdL~~Lsl-~EL~~LE~qLe~aL~~IR~rK~qll~~~i~-~L~~Ke~~L~ 99 (151)
.....++...+.+. ..+++++|++|.++++ .+|..++.+++.++..+|..+...+..++. .++.+...+.
T Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 114 SLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 34455566666655 3489999999999999 999999999999999999999999888776 5555444333
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.70 E-value=0.14 Score=33.75 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
+|++-|.+||..+..|+..|..= ..++..|+.+...|.++|..|....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L-----q~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL-----QMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47889999999999999999864 4566777776555555555554443
No 4
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.95 E-value=3.9 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
+|++=|..||..+..|+.-|- ++.-+|++|+.|...|..+-..++..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~q~~ 47 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 478889999999999998774 56667788877766555554444333
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.67 E-value=3 Score=27.89 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103 (151)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~ 103 (151)
+|++=|.+||..+..|+.-|- ++.-+|++|+.|-..|.+++.
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999874 455677777777555555433
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.43 E-value=4.6 Score=28.47 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+..|.+||++|..-+..|..-|. ++..|-..-..|.-||..|+..+.+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~-----~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKK-----QLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899998888888877663 445666666677788888888877653
No 7
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.47 E-value=5.7 Score=28.23 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
++-|.+||+++..-+..|..-|. ++..+-.....|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999998888887664 44566666777888888888888865
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.31 E-value=1.4 Score=27.91 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=21.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031900 48 QMKGEELQELNMEELMRLEKSLEGGLSRVV 77 (151)
Q Consensus 48 ~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR 77 (151)
+..|+||+.||+.||..==..|+.=+.|++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLE 41 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999864444444444444
No 9
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=84.12 E-value=2 Score=30.42 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 87 EIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 87 ~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
.+..|++|.+.|+|||+.|+-|++-
T Consensus 73 e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999998764
No 10
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.97 E-value=3.2 Score=26.19 Aligned_cols=29 Identities=41% Similarity=0.455 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 81 GERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 81 ~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
.+.+.++|.+|..+...|+.||..|+...
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667788888888888888888887764
No 11
>smart00338 BRLZ basic region leucin zipper.
Probab=80.00 E-value=10 Score=23.73 Aligned_cols=39 Identities=36% Similarity=0.417 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
.|..+-|.||.. .+..|..++..|..+|..|..++..+.
T Consensus 15 ~aA~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 15 EAARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777644 457777788888888888887776543
No 12
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=78.91 E-value=12 Score=22.68 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.|..+-|.||.+ .+..|..++..|..+|..|..++..+
T Consensus 14 ~AA~r~R~rkk~----~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 14 EAARRSRQRKKQ----REEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666643 45677888888888888888887654
No 13
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.72 E-value=13 Score=23.25 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.|-.+.|.||... |..|..++..|..+|..|...+..+
T Consensus 15 ~AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 15 EAARRSRQRKKQY----IEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777554 4666666666677776666665443
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=37 Score=31.08 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV-----QTKGERLLNEIDALRRKEAQLTEENLRLK 106 (151)
Q Consensus 32 ~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR-----~rK~qll~~~i~~L~~Ke~~L~eeN~~L~ 106 (151)
+++|..++..|+..+-.+. .++..||.+|+..-.+++ .|+.+.+...|..|+++...-...-..|.
T Consensus 431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666655544443 788889999999888887 34455666788888877555555555666
Q ss_pred HHHHhhh
Q 031900 107 QHETGIN 113 (151)
Q Consensus 107 ~k~~~~~ 113 (151)
.++....
T Consensus 502 ~~l~~l~ 508 (652)
T COG2433 502 RKLAELR 508 (652)
T ss_pred HHHHHHH
Confidence 6655443
No 15
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.24 E-value=44 Score=27.84 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 32 ~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll--~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
.+.|+.++..|+. .-++++.|..++|..+-..|..-...|..++.++- ..++..+..+.....+.-..+...+
T Consensus 181 ~~~L~~e~~~L~~-----~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 181 KDALEEELRQLKQ-----LEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHH-----hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 34678899999999999999999999988777754 4566777777777777777777777
Q ss_pred Hhhhc
Q 031900 110 TGINT 114 (151)
Q Consensus 110 ~~~~~ 114 (151)
.+...
T Consensus 256 ~~ae~ 260 (312)
T smart00787 256 AEAEK 260 (312)
T ss_pred HHHHH
Confidence 66554
No 16
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=75.89 E-value=24 Score=27.98 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhcccc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 34 ILSKEMADRTRELRQMKG-EELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 34 ~l~~e~~~L~~~~R~l~G-EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q--ll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
...++++.++.....-.+ +.=.+....|+..|+..++.--...-....+ -|..+.+.+.+.-..|.++|..|+.++.
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334466666554444332 1111234456677776666655544433333 4456777777778888999999998874
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.18 E-value=21 Score=26.62 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031900 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTK 80 (151)
Q Consensus 32 ~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK 80 (151)
+..+..++..++..+..+.+ +-...|.+|...++.....+....|.||
T Consensus 118 i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443 3333444455555555444444444444
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.95 E-value=50 Score=27.39 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 33 AILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 33 ~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll--~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
+.|..++..|+. .-.+++.+...+|..+-..|...-..|..+|..+- ..++..+..+...+.++...+...+.
T Consensus 187 ~~L~~e~~~Lk~-----~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 187 AELEEELENLKQ-----LVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHH-----HHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 23458999999999999999999999998877754 45777888888888888888888877
Q ss_pred hhhc
Q 031900 111 GINT 114 (151)
Q Consensus 111 ~~~~ 114 (151)
+...
T Consensus 262 e~~~ 265 (325)
T PF08317_consen 262 EAEK 265 (325)
T ss_pred HHHH
Confidence 6554
No 19
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=73.39 E-value=20 Score=25.50 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031900 65 LEKSLEGGLSRVVQTKGERLL---NEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 65 LE~qLe~aL~~IR~rK~qll~---~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
+.+.+|.|+.-| |+++|. ++++-|+.+.+.|.+.|..|...
T Consensus 46 IDNKIeQAMDLV---KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 46 IDNKIEQAMDLV---KTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred echHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555 344442 45555555555555555444443
No 20
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.50 E-value=12 Score=26.73 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 76 VVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 76 IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
||. -.+.+.++|.+|..+...|+.||..|+.-
T Consensus 65 VRE-EVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 65 VRE-EVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 454 56688899999999999999999999764
No 21
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=72.24 E-value=28 Score=24.71 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
++.+.+||++|-.-+..|-.-|.+ +..+-.....|+-||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456788999998888887776643 345555566677778888888876
No 22
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=69.66 E-value=35 Score=25.80 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031900 58 NMEELMRLEKSLEGGLSRVVQT---KGERLLNEIDALRRKEAQLTEEN 102 (151)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~r---K~qll~~~i~~L~~Ke~~L~eeN 102 (151)
+..||..|-++++.|..-||++ |-.+|.+||..|+++-+.+.++-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999965 66678889999988877665543
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.70 E-value=38 Score=23.81 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
++..+=. ....|..+|..|+.....|.+||..|+.....+..
T Consensus 9 ~l~~le~-~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 9 RLDQLEQ-QLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333 55667889999999999999999999999887765
No 24
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.62 E-value=36 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 65 LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+++..+.++..|..|+..+ ...|..+.++...+...-..+..++.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777776655433 667777777777666666666666544
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=67.21 E-value=31 Score=22.21 Aligned_cols=44 Identities=30% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
+|+.||.+++.=+.....-+ .+-..|+..+..+..|+..|..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~-----~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLK-----SENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888777665433 333444444445555555554444
No 26
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.18 E-value=48 Score=23.75 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 82 ERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
..|..+|..++++...|...|..|..+|..+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999999998643
No 27
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.17 E-value=61 Score=24.90 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=6.7
Q ss_pred hHHHHHHHhhhh
Q 031900 2 KQVIDRHNLHSQ 13 (151)
Q Consensus 2 ~~iLeRY~~~~~ 13 (151)
..+|++|+....
T Consensus 94 ~~~l~~y~~l~~ 105 (189)
T PF10211_consen 94 RMTLDAYQTLYE 105 (189)
T ss_pred HHHHHHHHHHHH
Confidence 346677765443
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.77 E-value=65 Score=25.24 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 31 TYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV--QTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 31 e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR--~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
-+..+.+++..++..+..+-++ .+ .....|.+.+..+-..|- ....+-+.+++..++.+...+..+|..+...
T Consensus 94 rlp~le~el~~l~~~l~~~~~~-~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT-WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555554432 11 333444444333333332 2233344555555555555555555555544
No 29
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.52 E-value=50 Score=22.63 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 66 EKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 66 E~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
+...+.+...+-.++ +.+...|..+..+...+..+-..++.++.++
T Consensus 58 ~~~~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 58 KQEKEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554433 3335566666666666666666666666543
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.18 E-value=1e+02 Score=25.98 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 68 SLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 68 qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
.|..-|...|.+ .+-+..++..|+++...++.+++.|+.+++....
T Consensus 69 ~La~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 69 NLAQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 344445555553 3445789999999999999999999999976553
No 31
>PF14645 Chibby: Chibby family
Probab=59.59 E-value=18 Score=25.79 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
.....++++.+.|.|||+.|+.++.
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888888888764
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.18 E-value=96 Score=24.27 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 031900 34 ILSKEMADRTR 44 (151)
Q Consensus 34 ~l~~e~~~L~~ 44 (151)
.++..+..+++
T Consensus 90 ~~~~rlp~le~ 100 (206)
T PRK10884 90 SLRTRVPDLEN 100 (206)
T ss_pred cHHHHHHHHHH
Confidence 34556666654
No 33
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=56.13 E-value=47 Score=23.18 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHH-----------HHHhhcccccCCCCCCHHHHH
Q 031900 25 LQLESSTYAILSKEMADR-----------TRELRQMKGEELQELNMEELM 63 (151)
Q Consensus 25 ~q~~~~e~~~l~~e~~~L-----------~~~~R~l~GEdL~~Lsl~EL~ 63 (151)
-+.|.+||+.|+.+++.| .+..|.|-|+-++.=.+++|.
T Consensus 7 Wq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~il 56 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEIL 56 (99)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHh
Confidence 356888999999988877 223455555555444444443
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.40 E-value=56 Score=21.30 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 79 TKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 79 rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
.|.+-..+.|..|+.+...|.++|..|......
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~ 43 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEE 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355566677777777777777777777655443
No 35
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.33 E-value=89 Score=23.64 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 59 MEELMRLEKSLEGGLSRVVQ----------TKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~----------rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+.+|..+|..++.+-.+... .+.....++|+.++++......+...|+++.+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777766666542 23445678888888888888888888888876544
No 36
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.50 E-value=55 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
..++..++++...+..+|..|+.++...
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666666666665543
No 37
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.86 E-value=60 Score=27.21 Aligned_cols=43 Identities=35% Similarity=0.414 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 54 LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (151)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L 105 (151)
-.+||.+|=..| -+||.||.+|+ ++|+.|+..++...+|-..+
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 456777766554 47999998876 77888888877766655444
No 38
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=49.81 E-value=44 Score=18.49 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR 93 (151)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~ 93 (151)
.+..|+..+..|...-+--+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467888899999888888888888888877765
No 39
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=47.95 E-value=34 Score=30.19 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 55 QELNMEELMRLEKSLEGGLSRVVQT------------KGERLLN-----------EIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~aL~~IR~r------------K~qll~~-----------~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
++.++....-|=+.=|..|++||.+ |.+-..+ +-.+|++|+..|...|..|..++..
T Consensus 232 EG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 232 EGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred ccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 4556667777777778888888732 1111111 2246778888888888888877765
Q ss_pred hhc
Q 031900 112 INT 114 (151)
Q Consensus 112 ~~~ 114 (151)
..+
T Consensus 312 lQt 314 (472)
T KOG0709|consen 312 LQT 314 (472)
T ss_pred HHH
Confidence 554
No 40
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=47.80 E-value=1.8e+02 Score=25.59 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=38.6
Q ss_pred ChHHHHHHHhhhhccccCCCCchHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031900 1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTK 80 (151)
Q Consensus 1 M~~iLeRY~~~~~~~~~~~~~~~~~q~~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK 80 (151)
|.++.+.|++|.......+. .........+.+.+..+.+.|-. -+++|..=+.++...+...+.+|
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~-~~~~~~~~~e~~~l~~eE~~L~q-------------~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQ-DVSEEDLLKELKNLKEEEERLLQ-------------QLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887765422211 11111122233333333333322 24555556677888888888888
Q ss_pred HHHHHHHH
Q 031900 81 GERLLNEI 88 (151)
Q Consensus 81 ~qll~~~i 88 (151)
.++..+.-
T Consensus 221 ~~~~e~~~ 228 (447)
T KOG2751|consen 221 ERLNEEED 228 (447)
T ss_pred HHHHHHHH
Confidence 77654433
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.75 E-value=47 Score=19.60 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 89 DALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
+.|++=-..|.+||..|++.+.+...
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777899999999999988775
No 42
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=47.16 E-value=25 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQ 78 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~ 78 (151)
.+|+++|++.+.+|..|+.
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~e 46 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAE 46 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788999999999988887
No 43
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.13 E-value=1e+02 Score=21.84 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
....|..++..|+.....+.+||..|+........
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999998776655
No 44
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.67 E-value=44 Score=25.43 Aligned_cols=43 Identities=30% Similarity=0.395 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 031900 62 LMRLEKSLEGGLSRVVQTKGERLLNEI---DALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~~~i---~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
|..+|..|..|+.| .-+|..+| +.|+.+.+.|.+|-.-|+..+
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888865 33444444 334444444555555554444
No 45
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.62 E-value=1.1e+02 Score=21.74 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 69 Le~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.+.+...|..|+ +.+...|..|.++...+.+.-..+..++.++
T Consensus 69 ~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 69 KTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 3445666666666666666666666665544
No 46
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.43 E-value=36 Score=28.46 Aligned_cols=54 Identities=33% Similarity=0.408 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQ------TKGERLL-------------------------------NEIDALRRKEAQLTEEN 102 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~------rK~qll~-------------------------------~~i~~L~~Ke~~L~eeN 102 (151)
.....||.+|..+...|.. .|+.++. -.++.|++|.+.|.+||
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 5667788888888888874 4555532 12478999999999999
Q ss_pred HHHHHHHHhhh
Q 031900 103 LRLKQHETGIN 113 (151)
Q Consensus 103 ~~L~~k~~~~~ 113 (151)
..|+.......
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99999876554
No 47
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=43.84 E-value=1.5e+02 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031900 64 RLEKSLEGGLSRVVQTK 80 (151)
Q Consensus 64 ~LE~qLe~aL~~IR~rK 80 (151)
..-.+|+..|..||.=|
T Consensus 45 evNrrlQ~hl~EIR~LK 61 (195)
T PF10226_consen 45 EVNRRLQQHLNEIRGLK 61 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 48
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.78 E-value=1e+02 Score=27.33 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 63 MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 63 ~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
..||++|+.- |. =.++|..+...++.|...+..+|..|+.++..
T Consensus 79 sELEKqLaaL----rq-Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 79 AQMQKQYEEI----RR-ELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHH----HH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445665554 21 22455667778889999999999999999854
No 49
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.76 E-value=90 Score=20.03 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+.+.|+.|=.....|..+|..|+.++....
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888888888876543
No 50
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=42.55 E-value=73 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 89 DALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
++++.++..|..||..|+.++..+..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777766544
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.53 E-value=89 Score=19.62 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
+..++..++++...+..+|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678888888888899999998888776
No 52
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=39.78 E-value=1.2e+02 Score=20.73 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 54 LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.++++++++ ||+.=......+++.|+.+...+..+|..|...|.+.
T Consensus 61 ~~~l~P~~~-------------i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 61 RHSLTPEED-------------IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCChHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555777654 3444444456778899999999999999999998654
No 53
>PF15058 Speriolin_N: Speriolin N terminus
Probab=38.90 E-value=76 Score=24.85 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
+++.++.+.++||+.++ |..||..|+.-+.+...
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 44456678899999998 66778888887766543
No 54
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.67 E-value=1.9e+02 Score=23.23 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
++|..|+..+..|+..|..|..|+.-+..
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999877664
No 55
>PRK11637 AmiB activator; Provisional
Probab=35.40 E-value=2.9e+02 Score=23.68 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 29 SSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENLRLK 106 (151)
Q Consensus 29 ~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q--ll~~~i~~L~~Ke~~L~eeN~~L~ 106 (151)
..++..+.+++..++..++. ...+|..|+.+|...-..|+....+ .+..+|..++.+...++.+-..++
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444 3356777788887777777665443 334455555555544444444444
Q ss_pred HHH
Q 031900 107 QHE 109 (151)
Q Consensus 107 ~k~ 109 (151)
..+
T Consensus 124 ~~l 126 (428)
T PRK11637 124 RLL 126 (428)
T ss_pred HHH
Confidence 433
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.23 E-value=2.9e+02 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 58 NMEELMRLEKSLEGGLSRVVQTKGER--LLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~rK~ql--l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
-.+||.-|=++.+.+=..-+.|=+.. +..++++|++-.+.|.++..+|..++....
T Consensus 234 yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 234 YRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred hhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666655555554 456677777777777777777777765544
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.14 E-value=1.2e+02 Score=19.43 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 82 ERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
..+..++..++++...+..+|..|+.++.....
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355678888999999999999999999876554
No 58
>PHA03155 hypothetical protein; Provisional
Probab=35.04 E-value=1.7e+02 Score=20.96 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031900 23 LQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQT 79 (151)
Q Consensus 23 ~~~q~~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~r 79 (151)
..++....++.+|+-++..|++.+++=.+.+=..||..+=+-+=.+.-.+|...=++
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~ 64 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEE 64 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999886666666688876555544444444444443
No 59
>smart00338 BRLZ basic region leucin zipper.
Probab=33.26 E-value=1.2e+02 Score=18.70 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 81 GERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 81 ~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
.+.|..+...|+.+...|..++..|...+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777777777777777654
No 60
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=32.71 E-value=63 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
....++-.|..+..+...|..||..|+..+.
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4445667788888889999999999988753
No 61
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.56 E-value=1.5e+02 Score=19.68 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 81 GERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 81 ~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
...+..+++.+++....+.++|..|+-+++....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445567899999999999999999998876554
No 62
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=32.35 E-value=85 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 59 MEELMRLEKSLEGGLSRVVQTKGER 83 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~ql 83 (151)
-.++..+|+.|......+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999988764
No 63
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.83 E-value=1.6e+02 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
.+.|+..+.....|..+|..|..=|..+..
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667799999999998877654
No 64
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=31.37 E-value=87 Score=19.02 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=12.5
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHH
Q 031900 54 LQELNMEELMR----LEKSLEGGLSRVV 77 (151)
Q Consensus 54 L~~Lsl~EL~~----LE~qLe~aL~~IR 77 (151)
|..+|++||++ |...+|.-+..+|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr 32 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELR 32 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55678887764 3444444444444
No 65
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.36 E-value=1.5e+02 Score=19.23 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 64 RLEKSLEGGLSRVV---QTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 64 ~LE~qLe~aL~~IR---~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
.||.+|-.|+..+- .++-+-.......|+..-..-..+|..|+.++..
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~ 53 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNN 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57888888887765 3444555566667766555455555555555544
No 66
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.35 E-value=1.5e+02 Score=20.56 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 82 ERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
|+-.++..-|+++...+.++|..|..++.....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578889999999999999999998876554
No 67
>PHA03155 hypothetical protein; Provisional
Probab=29.72 E-value=92 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 88 IDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 88 i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+++|..+...|.-||+.|++++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567778888899999999999854
No 68
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.39 E-value=2e+02 Score=20.05 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
-...++..|+++...|..||..|++...
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999998888764
No 69
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=29.36 E-value=1.3e+02 Score=27.46 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=26.8
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 76 VVQTKGERLL---NEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 76 IR~rK~qll~---~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
=|.||.+.|. ..|..|-+....|..||..|+.++.....
T Consensus 296 SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 296 SRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3555555443 36677777777899999999999876533
No 70
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.54 E-value=2.9e+02 Score=22.87 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.5
Q ss_pred HHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 42 RTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE 82 (151)
Q Consensus 42 L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q 82 (151)
+++.+++..=|.|.+|++.||.+|=.+|-..+..|-.-=++
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~ 244 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQ 244 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788889999999999999999988777776653333
No 71
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.03 E-value=3.3e+02 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 78 QTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 78 ~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
.+.++.|..+|...++-+..+.++...|+..+..+..
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778887788788888888888888877654
No 72
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=27.84 E-value=1.5e+02 Score=21.06 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
+..+|..|++....+.+||..|+-.......
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 3568889999999999999999988776655
No 73
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=27.29 E-value=1.2e+02 Score=18.46 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031900 53 ELQELNMEELMRLEKSLEGGLSRVVQT 79 (151)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~r 79 (151)
||-.+|.+||...-..+...|-..|..
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888888888888888853
No 74
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.61 E-value=2.9e+02 Score=20.98 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 54 LQELNMEELMRLEKSLEGGLSRVVQT--KGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~aL~~IR~r--K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
...+|+.+....=+++.........- -.+-+..++..|+.+...|..+|..|..++..
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999888777777543323221 12344567777777777788888777776543
No 75
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=26.37 E-value=1.8e+02 Score=24.45 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 67 KSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 67 ~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
++=|.|-.+=|.+| +-|+.|..++..|+++|+.|-.++..+.
T Consensus 298 KNREAARECRRKKK-----EYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 298 KNREAARECRRKKK-----EYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hhHHHHHHHHHhHh-----HHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 34455655555555 5578899999999999999887765443
No 76
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.18 E-value=6.4e+02 Score=24.83 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHH-------HHhhcccccCCCCCCHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHH
Q 031900 29 SSTYAILSKEMADRT-------RELRQMKGEELQELNMEELMRLEKS---LEGGLSRVVQTK------GERLLNEIDALR 92 (151)
Q Consensus 29 ~~e~~~l~~e~~~L~-------~~~R~l~GEdL~~Lsl~EL~~LE~q---Le~aL~~IR~rK------~qll~~~i~~L~ 92 (151)
+.+++.++..++.|+ .++-. .|-|....|--++.+||+| |..+|-|.|.-- .+.+..+++..+
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 344555555444433 33333 3788888888899999965 788998888421 123334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 031900 93 RKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 93 ~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
.....|......|..++..+.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666655443
No 77
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=26.09 E-value=4.4e+02 Score=24.52 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 61 ELMRLEKSLEGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll---~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.|..|+++-+.=+..-+.++..+= .++++.|+.-.+.|++|++-|.......
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777666543 5688999999999999999998876544
No 78
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=25.80 E-value=3e+02 Score=22.65 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=29.1
Q ss_pred CHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 58 NMEELMRLEKS-L--EGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 58 sl~EL~~LE~q-L--e~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
-..|+..||+. + ..|..+-|.|| ++.|..|++|+..+.-.|..|...+
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rk----LdrisrLEdkv~~lk~~n~~L~~~l 250 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRK----LDRISRLEDKVKTLKIYNRDLASEL 250 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 34567777751 2 23444555555 5777888888777776666665444
No 79
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.56 E-value=1.1e+02 Score=15.67 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 031900 31 TYAILSKEMADRTRE 45 (151)
Q Consensus 31 e~~~l~~e~~~L~~~ 45 (151)
|+.+++..|..|++.
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456667777666654
No 80
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.50 E-value=2.2e+02 Score=21.19 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhccc-ccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Q 031900 35 LSKEMADRTRELRQMK-GEELQELNMEE-LMRLEKSLEGGLSRVVQTKG 81 (151)
Q Consensus 35 l~~e~~~L~~~~R~l~-GEdL~~Lsl~E-L~~LE~qLe~aL~~IR~rK~ 81 (151)
+..++..+++..+.+| |.|-. ++++ |..+-.+++..-..+..-+.
T Consensus 21 ~~~kl~kl~r~Y~~lm~g~~~~--~lE~~l~~~~~~~~~~~~~~~~~~~ 67 (151)
T PF14584_consen 21 LNIKLRKLKRRYDALMRGKDGK--NLEDLLNELFDQIDELKEELEELEK 67 (151)
T ss_pred HHHHHHHHHHHHHHHhCCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555 33333 4454 34455555555555444333
No 81
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.72 E-value=2.8e+02 Score=22.64 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 54 LQELNMEELMRLEKSL--EGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 54 L~~Lsl~EL~~LE~qL--e~aL~~IR~rK~qll---~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
|+.||.+|=.+ -..| ..|-..-|.||..-| ..+|..|-..-+.|..+|..|+.+
T Consensus 61 L~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 61 LDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665322 1112 234455677776654 346666666666666666666554
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.57 E-value=4.1e+02 Score=22.02 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQ 78 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~ 78 (151)
++|..||+.-+.....++.
T Consensus 64 ~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 64 QELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666555554444444
No 83
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=24.35 E-value=4.6e+02 Score=22.51 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=48.4
Q ss_pred hHHHHHHHhhhhccccCCCCchHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (151)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~q~~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ 81 (151)
..+.+||.....-....+.. ....++..+.++...|+...- .+.++..++.+|+.+-.-+...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~-----~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~~D 74 (363)
T COG0216 10 ESLLERYEELEALLSDPEVI-----SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEEKD 74 (363)
T ss_pred HHHHHHHHHHHHHhcCcccc-----cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCC
Confidence 56788887665543322111 111234444555444443222 355677777777776666655444
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 82 ----ERLLNEIDALRRKEAQLTEENLRL 105 (151)
Q Consensus 82 ----qll~~~i~~L~~Ke~~L~eeN~~L 105 (151)
.+..++|..++.+...|.++-+.|
T Consensus 75 ~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 75 PEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334557777777766666655444
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.23 E-value=3e+02 Score=20.29 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=36.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEI---------DALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q--ll~~~i---------~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
+.++.++..+|..|..++..--..++.-+.+ -+..++ ..|......|..++..|..++..+..
T Consensus 64 ~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 64 DELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777775544444444333322 122222 35566677788888888888766553
No 85
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.92 E-value=2.3e+02 Score=18.93 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
|.+...+.|.-|+-.+..|.+.|..|...+..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777777777766544
No 86
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.78 E-value=5.3e+02 Score=23.02 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (151)
Q Consensus 28 ~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~ 107 (151)
...++..+..+++.|..+...+. +....+.+++..++...|. -+..+.+.|+.....+...-..|..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443332 2345577888888877764 2344556666666666666666666
Q ss_pred HHHh
Q 031900 108 HETG 111 (151)
Q Consensus 108 k~~~ 111 (151)
++..
T Consensus 138 ~l~~ 141 (472)
T TIGR03752 138 RLAG 141 (472)
T ss_pred HHhh
Confidence 6643
No 87
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.44 E-value=5.1e+02 Score=23.13 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 38 EMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEEN 102 (151)
Q Consensus 38 e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN 102 (151)
++...+..+|.++ |+ .=|+-|+-.+-..+..-+..+++|.+++ ..+|+.|..|...|.+.-
T Consensus 404 ~fR~Vk~~qRkl~-e~--~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 404 QFRSVKWEQRKLS-EQ--ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASL 464 (489)
T ss_pred HHHHHHHHHHHHH-hh--cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455566778877 44 4577899999999999999999988776 567888888776555443
No 88
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=2e+02 Score=24.03 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
+..+-++|..|++.|.+|-..|...
T Consensus 43 leaqrneln~kvr~lreel~~lqe~ 67 (404)
T KOG0728|consen 43 LEAQRNELNAKVRLLREELQLLQEP 67 (404)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 4456678888888888888777654
No 89
>PF14282 FlxA: FlxA-like protein
Probab=23.01 E-value=2.6e+02 Score=19.25 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 30 STYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEEN 102 (151)
Q Consensus 30 ~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN 102 (151)
..+..|.+++..|+..+..+... .+++.++ ...|.+.|..+|..|+.....+..+.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999888876652 3345443 34577777788888877766554443
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.82 E-value=3.1e+02 Score=20.01 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 61 ELMRLEKSLEGGLSRVVQTKGER--LLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~ql--l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
-++.||..|+.+=.+++..-.++ .....+.+.+++..|..+...+-.++.++.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555666665555555433332 223445666666667776666666665543
No 91
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=22.32 E-value=25 Score=20.35 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLN 86 (151)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~ 86 (151)
||..+++.||..+=+.+... ..-+-||.+++..
T Consensus 1 eL~~~~~~eL~~iAk~lgI~-~~~~~~K~eLI~~ 33 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIE-GYSKMRKQELIFA 33 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-T-TGCCS-HHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCC-CCCcCCHHHHHHH
Confidence 46778999999988877653 2334467777643
No 92
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=22.26 E-value=3.7e+02 Score=20.64 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHH
Q 031900 58 NMEELMRLEKSLEG 71 (151)
Q Consensus 58 sl~EL~~LE~qLe~ 71 (151)
+-++|++|+..|+.
T Consensus 110 s~~~iq~l~k~le~ 123 (172)
T KOG3366|consen 110 SKKRIQELEKELEK 123 (172)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 93
>PRK14127 cell division protein GpsB; Provisional
Probab=22.13 E-value=2.7e+02 Score=19.65 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 87 EIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 87 ~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
.++.+.+....|.++|..|..++.+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777766554
No 94
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=22.00 E-value=1.1e+02 Score=24.93 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=31.9
Q ss_pred HHHHHHHhhcccc--cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031900 39 MADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQ 78 (151)
Q Consensus 39 ~~~L~~~~R~l~G--EdL~~Lsl~EL~~LE~qLe~aL~~IR~ 78 (151)
-..+-..+|++.. ++.-+||++++..+|.+....|.++|.
T Consensus 217 r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~~ 258 (258)
T cd08888 217 RRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMRE 258 (258)
T ss_pred HHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3445566777663 567889999999999999999999883
No 95
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.87 E-value=1.8e+02 Score=17.04 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
.+...-+.|+..-..|..||..|+.++....
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888988888886654
No 96
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.73 E-value=3.4e+02 Score=20.09 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
.|...||..-.....+|+.++.+| +++...+.=-+.|...|..+...
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 367889999999999999977554 22222122223466666666554
No 97
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.48 E-value=7.9e+02 Score=24.23 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+..++..++.....+|. |..-+.+.++.|+.+...|+.++.-|+.++.-
T Consensus 1003 v~~~~ek~ee~~a~lr~-Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1003 VEKVQEKLEETQALLRK-KEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 34555566666666665 66677888999999999999999999998743
No 98
>PRK09039 hypothetical protein; Validated
Probab=21.34 E-value=4.9e+02 Score=21.80 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 29 SSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE 82 (151)
Q Consensus 29 ~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q 82 (151)
+.++..|+.+|+.|+.. |..||..|+.+=.+.+..+.+
T Consensus 136 ~~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 136 LAQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQAK 173 (343)
T ss_pred hHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888764 888888888888888665533
No 99
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.07 E-value=3.9e+02 Score=23.51 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 031900 63 MRLEKSLEGGLSRVV 77 (151)
Q Consensus 63 ~~LE~qLe~aL~~IR 77 (151)
..+..++++||.-|.
T Consensus 12 kyvdeEik~Al~GvK 26 (436)
T PF01093_consen 12 KYVDEEIKNALNGVK 26 (436)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555555554
No 100
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.98 E-value=3.7e+02 Score=20.51 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
.++|..++.+...|..++..|..+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666665554
No 101
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.96 E-value=1.1e+02 Score=23.66 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQ 78 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~ 78 (151)
.||+.||.||+.-+..||.
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3678888888887777764
No 102
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=20.96 E-value=63 Score=24.15 Aligned_cols=17 Identities=53% Similarity=0.653 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHH
Q 031900 54 LQELNMEELMRLEKSLE 70 (151)
Q Consensus 54 L~~Lsl~EL~~LE~qLe 70 (151)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 66799999999998774
No 103
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=3.4e+02 Score=22.92 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 70 EGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 70 e~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
..+...|++ ++++|..+|.-++..+..+..++..+..++.+.
T Consensus 19 ~mste~i~~-rtrlldnEirI~~sev~ri~he~~~~~ekIkeN 60 (424)
T KOG0652|consen 19 SMSTEEIIS-RTRLLDNEIRIMKSEVQRINHELQAMKEKIKEN 60 (424)
T ss_pred hccHHHHHH-HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 334444554 677888888888888888888888888777653
No 104
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=20.54 E-value=3.4e+02 Score=19.66 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 56 ~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
++|++++..+=..+...-......-..++.+++..+.++...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889988887654432211111112235555666666666666666666666654
No 105
>PHA02109 hypothetical protein
Probab=20.52 E-value=2.3e+02 Score=22.01 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcccccCCCCCC--HHHHHHHHHHHHHHHHHHH
Q 031900 36 SKEMADRTRELRQMKGEELQELN--MEELMRLEKSLEGGLSRVV 77 (151)
Q Consensus 36 ~~e~~~L~~~~R~l~GEdL~~Ls--l~EL~~LE~qLe~aL~~IR 77 (151)
..+|+.++ |...|+.|++|+ ++++-.||-.|+.--...-
T Consensus 170 TE~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~ 210 (233)
T PHA02109 170 TERIDQVE---RSHTGENLEGLTDKLKQISELTIKLEALSDEAC 210 (233)
T ss_pred HHHHHHHH---hccchhhhhhhhHHHHhhHHHHHHHHHHHHHHH
Confidence 34555554 577899999887 6677777776665433333
No 106
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.27 E-value=3e+02 Score=18.92 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 56 ~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
++|++|+..+=.....+-...-..-..++.++++.+.++.+.+...-..|...+.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788887776443332210111111234555555555555555555555554443
Done!