Query 031900
Match_columns 151
No_of_seqs 122 out of 1110
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 91.7 1.8 6.2E-05 28.2 8.4 43 57-104 3-45 (81)
2 2dgc_A Protein (GCN4); basic d 88.2 1.7 5.9E-05 26.7 5.9 39 71-113 19-57 (63)
3 1dh3_A Transcription factor CR 86.0 3.1 0.00011 24.9 6.0 38 73-114 13-50 (55)
4 2oqq_A Transcription factor HY 85.2 2.8 9.6E-05 23.8 5.1 29 82-110 13-41 (42)
5 2wt7_A Proto-oncogene protein 83.6 4.5 0.00015 24.7 6.1 38 72-113 13-50 (63)
6 1t2k_D Cyclic-AMP-dependent tr 82.2 5.4 0.00018 24.0 6.1 37 72-112 12-48 (61)
7 1ci6_A Transcription factor AT 81.7 5.4 0.00018 24.4 6.0 38 71-112 12-49 (63)
8 1dip_A Delta-sleep-inducing pe 81.7 2.6 8.8E-05 27.0 4.5 28 82-109 18-45 (78)
9 1jnm_A Proto-oncogene C-JUN; B 79.9 7.3 0.00025 23.5 6.1 39 71-113 11-49 (62)
10 2dfs_A Myosin-5A; myosin-V, in 76.2 31 0.001 32.2 11.7 25 89-113 1019-1043(1080)
11 2w6a_A ARF GTPase-activating p 69.5 16 0.00056 22.2 8.5 52 56-107 9-62 (63)
12 1gd2_E Transcription factor PA 68.9 18 0.00063 22.6 6.4 42 71-112 18-62 (70)
13 2yy0_A C-MYC-binding protein; 68.8 12 0.00041 22.1 4.9 28 83-110 23-50 (53)
14 3s9g_A Protein hexim1; cyclin 63.8 30 0.001 23.2 8.2 26 85-110 64-89 (104)
15 1j1d_C Troponin I, TNI; THIN f 59.4 43 0.0015 23.5 9.0 32 52-83 53-84 (133)
16 3nmd_A CGMP dependent protein 59.1 31 0.0011 21.8 7.9 47 62-113 21-67 (72)
17 1a93_B MAX protein, coiled coi 58.5 18 0.00062 19.5 3.8 24 79-102 7-30 (34)
18 1hjb_A Ccaat/enhancer binding 55.0 41 0.0014 21.9 6.1 24 89-112 39-62 (87)
19 1nkp_B MAX protein, MYC proto- 53.2 39 0.0013 21.2 6.2 29 85-113 53-81 (83)
20 3hnw_A Uncharacterized protein 52.3 57 0.002 22.8 8.5 47 65-111 80-128 (138)
21 1gu4_A CAAT/enhancer binding p 51.8 43 0.0015 21.2 6.1 38 72-113 26-63 (78)
22 1j1e_C Troponin I, TNI; THIN f 51.0 72 0.0025 23.6 8.4 31 53-83 54-84 (180)
23 1ytz_T Troponin T; muscle, THI 48.6 44 0.0015 22.6 5.5 53 52-112 37-89 (107)
24 1j1d_B Troponin T, TNT; THIN f 46.5 42 0.0014 22.6 5.1 31 53-83 38-68 (106)
25 1go4_E MAD1 (mitotic arrest de 46.4 32 0.0011 23.0 4.4 28 86-113 12-39 (100)
26 1gk7_A Vimentin; intermediate 44.0 40 0.0014 18.5 4.8 26 85-110 12-37 (39)
27 1m1j_C Fibrinogen gamma chain; 43.9 73 0.0025 26.5 7.2 45 2-52 26-70 (409)
28 1e52_A Excinuclease ABC subuni 43.1 25 0.00086 21.5 3.2 42 53-94 13-58 (63)
29 2aze_A Transcription factor DP 42.8 92 0.0031 22.4 8.0 49 58-108 3-51 (155)
30 2jee_A YIIU; FTSZ, septum, coi 42.1 67 0.0023 20.6 5.5 31 80-110 14-44 (81)
31 2oxj_A Hybrid alpha/beta pepti 41.8 38 0.0013 18.2 3.4 23 88-110 3-25 (34)
32 1ci6_A Transcription factor AT 41.8 56 0.0019 19.6 5.6 32 80-111 31-62 (63)
33 3m48_A General control protein 40.7 33 0.0011 18.3 3.0 23 89-111 3-25 (33)
34 3s4r_A Vimentin; alpha-helix, 39.8 76 0.0026 20.6 8.2 30 83-112 53-82 (93)
35 3qh9_A Liprin-beta-2; coiled-c 38.3 78 0.0027 20.3 5.6 34 77-110 17-50 (81)
36 3s4r_A Vimentin; alpha-helix, 37.4 79 0.0027 20.5 5.3 16 62-77 11-26 (93)
37 3na7_A HP0958; flagellar bioge 35.5 1.4E+02 0.0049 22.5 9.4 37 58-94 88-126 (256)
38 3hnw_A Uncharacterized protein 34.9 1.1E+02 0.0039 21.2 10.4 69 29-111 67-135 (138)
39 1g6u_A Domain swapped dimer; d 33.1 66 0.0023 17.9 4.6 21 55-75 15-35 (48)
40 1t2k_D Cyclic-AMP-dependent tr 33.1 76 0.0026 18.7 5.4 29 81-109 31-59 (61)
41 3c3f_A Alpha/beta peptide with 33.0 59 0.002 17.4 3.4 23 88-110 3-25 (34)
42 3w03_C DNA repair protein XRCC 32.1 70 0.0024 23.7 4.7 29 84-112 150-178 (184)
43 1am9_A Srebp-1A, protein (ster 31.9 81 0.0028 19.8 4.5 28 86-113 50-77 (82)
44 3p57_A Myocyte-specific enhanc 30.4 14 0.00047 24.3 0.6 13 1-13 61-73 (90)
45 2xus_A Breast cancer metastasi 30.1 84 0.0029 18.2 5.6 33 59-98 12-44 (49)
46 2v71_A Nuclear distribution pr 29.6 1.7E+02 0.0059 21.6 11.8 23 88-110 90-112 (189)
47 3q4f_C DNA repair protein XRCC 29.3 67 0.0023 23.8 4.1 24 85-108 160-183 (186)
48 2dfs_A Myosin-5A; myosin-V, in 28.7 3.6E+02 0.012 25.1 10.3 19 59-77 969-987 (1080)
49 1p9i_A Cortexillin I/GCN4 hybr 27.5 68 0.0023 16.3 2.9 18 95-112 8-25 (31)
50 2bni_A General control protein 27.3 78 0.0027 16.9 3.2 22 89-110 4-25 (34)
51 1uii_A Geminin; human, DNA rep 26.9 1.3E+02 0.0044 19.4 5.3 27 84-110 51-77 (83)
52 2zxx_A Geminin; coiled-coil, c 26.7 1E+02 0.0035 19.6 4.2 28 83-110 38-65 (79)
53 3anw_B GINS23, putative unchar 25.6 1.6E+02 0.0053 21.5 5.6 50 32-82 82-133 (171)
54 3thf_A Protein shroom; coiled- 25.6 1.3E+02 0.0046 22.3 5.2 35 73-111 10-44 (190)
55 2l5g_A GPS2 protein, G protein 24.3 96 0.0033 16.9 3.4 20 86-105 15-34 (38)
56 3oja_B Anopheles plasmodium-re 24.2 3.1E+02 0.01 22.8 10.8 29 86-114 551-579 (597)
57 2jo8_A Serine/threonine-protei 23.7 97 0.0033 18.1 3.4 11 54-64 7-17 (51)
58 3gp4_A Transcriptional regulat 23.5 1.8E+02 0.0062 19.9 8.2 57 56-113 59-115 (142)
59 1nkp_A C-MYC, MYC proto-oncoge 22.8 1.5E+02 0.0052 18.8 6.3 22 92-113 65-86 (88)
60 2wh0_Q Pkcev3, protein kinase 21.1 72 0.0025 16.2 2.1 13 61-73 14-26 (31)
61 1deb_A APC protein, adenomatou 20.8 1.4E+02 0.0047 17.5 3.9 21 91-111 8-28 (54)
62 1a92_A Delta antigen; leucine 20.6 93 0.0032 18.0 2.8 26 81-106 16-41 (50)
63 3c3g_A Alpha/beta peptide with 20.2 1.1E+02 0.0038 16.2 4.0 21 90-110 4-24 (33)
64 2aze_B Transcription factor E2 20.2 2E+02 0.0068 19.0 5.0 33 80-112 7-39 (106)
65 2w6b_A RHO guanine nucleotide 20.1 1.5E+02 0.0051 17.6 4.7 28 84-111 8-35 (56)
66 1wlq_A Geminin; coiled-coil; 2 20.1 1.8E+02 0.0063 18.6 4.7 26 84-109 43-68 (83)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.65 E-value=1.8 Score=28.18 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (151)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~ 104 (151)
+|++=|.+||..+..|+..|- ++..+|+.|+.|-..|..+|..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999998774 4556677777776664444444
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=88.20 E-value=1.7 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
.|-.+.|.||. +.+..|..++..|..+|..|..++..+.
T Consensus 19 eAArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 19 EAARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777774 4567888888889999999998887654
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=86.01 E-value=3.1 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 73 LSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 73 L~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
-.+-|.||. ..++.|..++..|..+|..|..++..+..
T Consensus 13 A~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 13 ARESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566664 45688899999999999999999877654
No 4
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=85.20 E-value=2.8 Score=23.79 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 82 ERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
+-|...+.+|..++..|+.||..|++.+.
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34556778999999999999999998763
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.58 E-value=4.5 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
|..+-|.||.+. +..|..++..|..+|..|...+..+.
T Consensus 13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557777544 67888888888888888888876543
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.22 E-value=5.4 Score=24.03 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
|..+-|.||.+ .+..|..++..|..+|..|..++..+
T Consensus 12 AA~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 12 AASRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777754 45677777777888888887777554
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.69 E-value=5.4 Score=24.37 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.|..+-|.+|.+ .+..|..++..|..+|..|..++..+
T Consensus 12 ~AA~R~R~KKk~----~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 12 TAATRYRQKKRA----EQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666766643 45666667777777777777666543
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.68 E-value=2.6 Score=26.95 Aligned_cols=28 Identities=39% Similarity=0.396 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 82 ERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
+.+.++|.+|..+...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677888999999999999998887754
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.90 E-value=7.3 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
.|..+-|.||.+ .+..|..++..|..+|..|..++..+.
T Consensus 11 ~AA~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 11 IAASKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777754 467888888888888888888876544
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.21 E-value=31 Score=32.21 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 89 DALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+.|+.|+..|..+|..|++++.++.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999987765
No 11
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=69.52 E-value=16 Score=22.21 Aligned_cols=52 Identities=31% Similarity=0.490 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 56 ELNMEELMRLEKSLEGGLSRVVQ--TKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (151)
Q Consensus 56 ~Lsl~EL~~LE~qLe~aL~~IR~--rK~qll~~~i~~L~~Ke~~L~eeN~~L~~ 107 (151)
+.++.|..++-+.|-.+=.+|.. +=+.-+.+++.-++++.+.|+.||..|+.
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 46777777777766666555542 11223457788888999999999998873
No 12
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.94 E-value=18 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 71 GGLSRVVQTKGERLL---NEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 71 ~aL~~IR~rK~qll~---~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
.|=...|.||.+-|. .++..|......+..+|..|+..+..+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777766543 355556555556677777777776544
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.76 E-value=12 Score=22.10 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
.|..++..|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888898889999988888875
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.77 E-value=30 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
-.+|..|..++..|..||..|+..-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888877654
No 15
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=59.43 E-value=43 Score=23.53 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (151)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ql 83 (151)
-++++++..+|+.+=+.|...+..+=+-|..+
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 37999999999999999999888877666544
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.08 E-value=31 Score=21.76 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+..|+..|......||.+. . .|..|.+.......+...|+.++....
T Consensus 21 i~eLq~~L~~K~eELr~kd-~----~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-A----LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888999999998844 3 356666666667777778888876554
No 17
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.49 E-value=18 Score=19.51 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 79 TKGERLLNEIDALRRKEAQLTEEN 102 (151)
Q Consensus 79 rK~qll~~~i~~L~~Ke~~L~eeN 102 (151)
||..-....|+.|+++...|.++-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 466666667777776666555543
No 18
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.01 E-value=41 Score=21.87 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 89 DALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
..+..++..|..+|..|+.+|..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666665543
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.25 E-value=39 Score=21.19 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
..++..|+.....|..+|..|..++....
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666777777888887776543
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.34 E-value=57 Score=22.82 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 65 LEKSLEGGLSRVVQTKGERLLN--EIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 65 LE~qLe~aL~~IR~rK~qll~~--~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
|+.+++.--..+=+-|.++... +++.+.++...+.+++..|..++..
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444322 3344444445555555555555443
No 21
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.77 E-value=43 Score=21.25 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
|..+=|.++.+ ....+..++..|..+|..|+.+|..+.
T Consensus 26 AakrSR~krk~----r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 26 AVRKSRDKAKM----RNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444543322 234566677777777777777776544
No 22
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=50.96 E-value=72 Score=23.55 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (151)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ql 83 (151)
++++|+..+|+.+=+.|...+..+=+-|..+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8889999999999999999988887766555
No 23
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=48.57 E-value=44 Score=22.57 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=36.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
-++++|+..+|+.+=++|...+..+=+-|..+ ..++..-.-+-..|+.++.++
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDl--------E~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDF--------AEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHhhhhHHHHHHHHHHHh
Confidence 38999999999999999999888876666444 333333333444555555555
No 24
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=46.49 E-value=42 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (151)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ql 83 (151)
++++||..+|+.+=+.|...+..+=+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7999999999999999999888877766554
No 25
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.41 E-value=32 Score=23.03 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+++..++++...|..||..|+..+....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777765543
No 26
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=44.00 E-value=40 Score=18.54 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
.+..-..-.|++.|..+|..|..++.
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556788889999999998874
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.89 E-value=73 Score=26.45 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhhccccCCCCchHHHHhHHHHHHHHHHHHHHHHHhhccccc
Q 031900 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGE 52 (151)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~q~~~~e~~~l~~e~~~L~~~~R~l~GE 52 (151)
+++|.+|++..... -..++....++..+...+..|.+.+.....+
T Consensus 26 ~d~L~k~e~~V~~~------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 26 ADFFNKYRLTTDGE------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56777887654322 1223344445555666666555555444444
No 28
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=43.06 E-value=25 Score=21.48 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 53 ELQELNME----ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (151)
Q Consensus 53 dL~~Lsl~----EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~K 94 (151)
+...++.+ -+..|+.++..|.....--+...+.++|..|+++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44455533 3667888999999888888888888888888765
No 29
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=42.75 E-value=92 Score=22.42 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 58 NMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
|+.|...||..-..-..+|+.+|.+| +++...+.=-+.|.+.|+.+..+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999876554 22222222234466666666543
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.15 E-value=67 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
|.+-..+.|.-|+-....|.++|..|.....
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~ 44 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555443
No 31
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.81 E-value=38 Score=18.17 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031900 88 IDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 88 i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
++.|..|+..|..+|..|...+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555556655555544
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.79 E-value=56 Score=19.63 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+.+-+..+...|+.++..|..|+..|+.-+.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445567778888888888888888776643
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.73 E-value=33 Score=18.31 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031900 89 DALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+.|..|+..|..+|..|...+.-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556666667777777666543
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.83 E-value=76 Score=20.61 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
++...|..|+++...+..++..|..++..+
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999888877654
No 35
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.30 E-value=78 Score=20.32 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 77 VQTKGERLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 77 R~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
|.+|++=+.++|+.|+-|+..+..|......++.
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777888888888888877777666666553
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.43 E-value=79 Score=20.51 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 031900 62 LMRLEKSLEGGLSRVV 77 (151)
Q Consensus 62 L~~LE~qLe~aL~~IR 77 (151)
++.|=..|-.=+.+||
T Consensus 11 mq~LNdRlAsyIdKVR 26 (93)
T 3s4r_A 11 LQELNDRFANLIDKVR 26 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555555
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.51 E-value=1.4e+02 Score=22.51 Aligned_cols=37 Identities=27% Similarity=0.146 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 031900 58 NMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRK 94 (151)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~rK~qll--~~~i~~L~~K 94 (151)
+.+|+..|.+.++.+-.++...-++++ ++.++.++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888776665544 4555544443
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.92 E-value=1.1e+02 Score=21.23 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 29 SSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 29 ~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
-+++..++.+++.|+..+..+ -+|+..|=+.|..+-.++.. ...++..|+++...|+.++..|...
T Consensus 67 adEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665543332 34455555555444443333 3456677777777777777777666
Q ss_pred HHh
Q 031900 109 ETG 111 (151)
Q Consensus 109 ~~~ 111 (151)
+..
T Consensus 133 ~~~ 135 (138)
T 3hnw_A 133 LND 135 (138)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 39
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.12 E-value=66 Score=17.94 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 031900 55 QELNMEELMRLEKSLEGGLSR 75 (151)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~aL~~ 75 (151)
+++|.+||--||..|+.--.+
T Consensus 15 egfspeelaaleselqalekk 35 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKK 35 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999877654333
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.11 E-value=76 Score=18.67 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 81 GERLLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 81 ~qll~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
...+..+...|+.++..|.+++..|+..+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777888888888888887765
No 41
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.97 E-value=59 Score=17.36 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031900 88 IDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 88 i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
++.|..|+..|..+|..|...++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455555555566665555544
No 42
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.13 E-value=70 Score=23.67 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
+++.+..|+.+...|..+|..|+.....+
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999998876543
No 43
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=31.88 E-value=81 Score=19.78 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
+-|..|+..+..|.+++..|+..+....
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566788888899999999998886543
No 44
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=30.45 E-value=14 Score=24.33 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=10.6
Q ss_pred ChHHHHHHHhhhh
Q 031900 1 MKQVIDRHNLHSQ 13 (151)
Q Consensus 1 M~~iLeRY~~~~~ 13 (151)
|..||+||++++.
T Consensus 61 ~~~il~rY~~~~~ 73 (90)
T 3p57_A 61 MDKVLLKYTEYNE 73 (90)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHhcCc
Confidence 5789999998754
No 45
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.11 E-value=84 Score=18.22 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQL 98 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L 98 (151)
+++|..||+|.- .-|++++.+.|..++++...+
T Consensus 12 ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 456666665543 236777778887777775443
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.55 E-value=1.7e+02 Score=21.62 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031900 88 IDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 88 i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
|..|++....|...+..|...|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555543
No 47
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.30 E-value=67 Score=23.84 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 85 LNEIDALRRKEAQLTEENLRLKQH 108 (151)
Q Consensus 85 ~~~i~~L~~Ke~~L~eeN~~L~~k 108 (151)
.+.|..|+.+...|++||.+|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888999999999999999765
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.70 E-value=3.6e+02 Score=25.07 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031900 59 MEELMRLEKSLEGGLSRVV 77 (151)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR 77 (151)
+++|..++..++.+-.+|+
T Consensus 969 l~~le~~~~e~~~~~~~v~ 987 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVL 987 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 49
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.52 E-value=68 Score=16.32 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031900 95 EAQLTEENLRLKQHETGI 112 (151)
Q Consensus 95 e~~L~eeN~~L~~k~~~~ 112 (151)
...|.-+|+.|..++++.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345777888888887664
No 50
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.31 E-value=78 Score=16.93 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031900 89 DALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
+.|..|+..|..+|..|...++
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHH
Confidence 3444455555555555555543
No 51
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.92 E-value=1.3e+02 Score=19.36 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
|.++|+.++.....+..+|..|+.-..
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777776665443
No 52
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.68 E-value=1e+02 Score=19.62 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
.+..+|+.++.....|.++|..|..-..
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666677777777765543
No 53
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=25.58 E-value=1.6e+02 Score=21.47 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 32 YAILSKEMADRTRELRQMKGEELQE--LNMEELMRLEKSLEGGLSRVVQTKGE 82 (151)
Q Consensus 32 ~~~l~~e~~~L~~~~R~l~GEdL~~--Lsl~EL~~LE~qLe~aL~~IR~rK~q 82 (151)
|.+++.-+..|+..+|.-.+.|++. ..+++|..+.+.++ .|..+|-+|.=
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KIv 133 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKIL 133 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5677888999999999988888766 33457766666554 46666766643
No 54
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=25.58 E-value=1.3e+02 Score=22.30 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 73 LSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 73 L~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
-+.|..+|.++ |..|++|...|.++-..|...+..
T Consensus 10 ~~~i~~Kk~EL----i~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 10 TNLIKQKMDEL----IKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888777 578888888888888888777644
No 55
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.28 E-value=96 Score=16.94 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031900 86 NEIDALRRKEAQLTEENLRL 105 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L 105 (151)
++|..|+.|...|.+|.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777676665544
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.24 E-value=3.1e+02 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHETGINT 114 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~ 114 (151)
..++..+++...+.+++..++.++.+...
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556677777777666655443
No 57
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.68 E-value=97 Score=18.10 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.4
Q ss_pred CCCCCHHHHHH
Q 031900 54 LQELNMEELMR 64 (151)
Q Consensus 54 L~~Lsl~EL~~ 64 (151)
|..||++||++
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 44568888765
No 58
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.53 E-value=1.8e+02 Score=19.89 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 56 ~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
++|+++...+=.....+-..+.. ..+++.+++..+.++...|...-..|..++....
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888887765544433222222 2346667777777777777777777777765443
No 59
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.82 E-value=1.5e+02 Score=18.78 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 031900 92 RRKEAQLTEENLRLKQHETGIN 113 (151)
Q Consensus 92 ~~Ke~~L~eeN~~L~~k~~~~~ 113 (151)
......|..+|..|..++..+.
T Consensus 65 ~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 65 ISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334457777888888776654
No 60
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.13 E-value=72 Score=16.21 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 031900 61 ELMRLEKSLEGGL 73 (151)
Q Consensus 61 EL~~LE~qLe~aL 73 (151)
|+..||+.+..||
T Consensus 14 eikelennirkal 26 (31)
T 2wh0_Q 14 EIKELENNIRKAL 26 (31)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555554444
No 61
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.81 E-value=1.4e+02 Score=17.46 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031900 91 LRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 91 L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
|-+++..|..||.-|++.+.+
T Consensus 8 L~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHh
Confidence 334455566677777776654
No 62
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.59 E-value=93 Score=18.00 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 81 GERLLNEIDALRRKEAQLTEENLRLK 106 (151)
Q Consensus 81 ~qll~~~i~~L~~Ke~~L~eeN~~L~ 106 (151)
.+-+...+...+++.+.|+++|-.|-
T Consensus 16 ~eeler~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCchh
Confidence 33445566777778888888886553
No 63
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.25 E-value=1.1e+02 Score=16.18 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031900 90 ALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 90 ~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
.|..|+..|..+|..|...++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555543
No 64
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.19 E-value=2e+02 Score=19.05 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 80 KGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 80 K~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
+...+..++..|..+|+.|-+.-..+...+..+
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777666666666655443
No 65
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.13 E-value=1.5e+02 Score=17.58 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
+.+-+-.|+..+..|..+|+.|.+-+++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777666544
No 66
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.12 E-value=1.8e+02 Score=18.64 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 84 LLNEIDALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 84 l~~~i~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
|...|+.++.....|.++|..|+.-.
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777776543
Done!