Query 031900
Match_columns 151
No_of_seqs 122 out of 1110
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 10:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031900.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031900hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 41.4 16 0.0012 20.4 3.6 34 61-94 18-51 (56)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 36.3 31 0.0023 19.0 4.4 25 86-110 33-57 (61)
3 d1r8ea1 a.6.1.3 (A:3-120) Tran 27.2 62 0.0046 19.6 6.2 10 56-65 61-70 (118)
4 d1nkpb_ a.38.1.1 (B:) Max prot 25.0 60 0.0044 18.6 6.2 39 69-112 42-80 (83)
5 d1t27a_ d.129.3.4 (A:) Phoshat 23.0 36 0.0026 24.9 3.7 39 40-78 219-259 (269)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 22.7 70 0.0051 18.5 6.3 26 87-112 60-85 (88)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 21.4 70 0.0051 18.1 6.1 21 89-109 57-77 (79)
8 d1am9a_ a.38.1.1 (A:) SREBP-1a 20.4 76 0.0055 18.1 4.6 33 80-112 41-76 (80)
9 d2azea1 e.63.1.1 (A:199-346) T 19.5 1.2E+02 0.0085 20.0 7.7 24 60-83 2-25 (148)
10 d2azeb1 e.63.1.2 (B:201-301) T 16.4 1.1E+02 0.0083 18.5 5.4 29 83-111 5-33 (101)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=41.37 E-value=16 Score=20.35 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (151)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~K 94 (151)
.+..||.++..|.....--|.-.+.++|..|++.
T Consensus 18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 3778899999999888888888888888888765
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.35 E-value=31 Score=18.98 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 86 NEIDALRRKEAQLTEENLRLKQHET 110 (151)
Q Consensus 86 ~~i~~L~~Ke~~L~eeN~~L~~k~~ 110 (151)
+-|..|++++..|.+++..|+....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999988887764
No 3
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=27.19 E-value=62 Score=19.58 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.5
Q ss_pred CCCHHHHHHH
Q 031900 56 ELNMEELMRL 65 (151)
Q Consensus 56 ~Lsl~EL~~L 65 (151)
++|+++...+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3566665544
No 4
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=60 Score=18.64 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 69 Le~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
|..|+.-|+. +.+++..+......|..+|..|..++...
T Consensus 42 L~~A~~yI~~-----L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 42 LDKATEYIQY-----MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555543 33344455555555666677777666543
No 5
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.96 E-value=36 Score=24.87 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHhhcccc--cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031900 40 ADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQ 78 (151)
Q Consensus 40 ~~L~~~~R~l~G--EdL~~Lsl~EL~~LE~qLe~aL~~IR~ 78 (151)
..+-..+|++.. ++.-+||++++..+|.+....|.++|.
T Consensus 219 ~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 445566777663 467889999999999999999998886
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.66 E-value=70 Score=18.54 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 87 EIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 87 ~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
++..+..+...|..++..|..++...
T Consensus 60 ~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 60 EEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555666666666666544
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.38 E-value=70 Score=18.11 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031900 89 DALRRKEAQLTEENLRLKQHE 109 (151)
Q Consensus 89 ~~L~~Ke~~L~eeN~~L~~k~ 109 (151)
..+......|..++..|+.++
T Consensus 57 ~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 57 RKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555555554
No 8
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=76 Score=18.10 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900 80 KGERLLN---EIDALRRKEAQLTEENLRLKQHETGI 112 (151)
Q Consensus 80 K~qll~~---~i~~L~~Ke~~L~eeN~~L~~k~~~~ 112 (151)
|..+|.. -|..|+.+...|.+++..|+..+...
T Consensus 41 K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555543 55667777778888888887776543
No 9
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.55 E-value=1.2e+02 Score=19.96 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031900 60 EELMRLEKSLEGGLSRVVQTKGER 83 (151)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK~ql 83 (151)
.|.+.||........+|+.++.+|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L 25 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999977654
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.44 E-value=1.1e+02 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900 83 RLLNEIDALRRKEAQLTEENLRLKQHETG 111 (151)
Q Consensus 83 ll~~~i~~L~~Ke~~L~eeN~~L~~k~~~ 111 (151)
-+..++..|..+|+.|-+.-..+..++.+
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777666666666555544
Done!