Query 031903
Match_columns 150
No_of_seqs 146 out of 1936
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 06:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.7E-31 3.7E-36 160.6 17.7 146 2-148 11-156 (160)
2 KOG0027 Calmodulin and related 100.0 3E-28 6.5E-33 149.1 17.4 145 5-149 2-150 (151)
3 PTZ00184 calmodulin; Provision 100.0 7.7E-27 1.7E-31 142.8 17.9 148 1-148 1-148 (149)
4 PTZ00183 centrin; Provisional 100.0 3.5E-26 7.6E-31 141.2 18.3 146 3-148 9-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 3.9E-25 8.5E-30 130.7 16.0 147 3-149 25-171 (172)
6 KOG0031 Myosin regulatory ligh 99.9 4.7E-23 1E-27 121.2 16.7 140 4-147 25-164 (171)
7 KOG0034 Ca2+/calmodulin-depend 99.9 2.5E-21 5.4E-26 120.5 14.7 142 3-148 25-175 (187)
8 KOG0037 Ca2+-binding protein, 99.9 9.2E-21 2E-25 117.9 15.0 132 10-148 56-188 (221)
9 KOG0030 Myosin essential light 99.9 3.7E-20 8.1E-25 107.3 13.5 144 4-148 4-151 (152)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 3.5E-19 7.6E-24 111.1 14.8 142 3-147 21-174 (193)
11 KOG0036 Predicted mitochondria 99.8 3.1E-19 6.7E-24 120.3 15.6 140 4-149 7-147 (463)
12 KOG0027 Calmodulin and related 99.6 1.5E-14 3.2E-19 88.6 10.9 104 46-150 7-115 (151)
13 PLN02964 phosphatidylserine de 99.6 3.9E-14 8.4E-19 102.8 14.1 105 3-112 135-243 (644)
14 COG5126 FRQ1 Ca2+-binding prot 99.6 2.6E-13 5.7E-18 82.3 12.0 102 47-150 20-122 (160)
15 PF13499 EF-hand_7: EF-hand do 99.6 3.4E-14 7.3E-19 75.1 7.1 61 86-146 2-66 (66)
16 KOG4223 Reticulocalbin, calume 99.6 5.4E-14 1.2E-18 92.7 9.3 136 9-144 161-301 (325)
17 PTZ00183 centrin; Provisional 99.5 4.6E-13 1E-17 82.6 12.3 103 47-150 17-120 (158)
18 cd05022 S-100A13 S-100A13: S-1 99.5 4.5E-14 9.9E-19 78.2 6.7 67 83-149 7-76 (89)
19 KOG4223 Reticulocalbin, calume 99.5 2E-13 4.3E-18 90.1 10.2 139 9-147 75-227 (325)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.5 1.7E-12 3.6E-17 81.4 13.3 121 26-148 7-128 (193)
21 KOG0377 Protein serine/threoni 99.5 5.9E-13 1.3E-17 91.3 12.1 135 11-147 464-614 (631)
22 PTZ00184 calmodulin; Provision 99.5 3.7E-12 8.1E-17 77.7 12.4 102 47-149 11-113 (149)
23 PF13499 EF-hand_7: EF-hand do 99.5 7.9E-13 1.7E-17 69.8 7.9 62 12-73 1-66 (66)
24 KOG0038 Ca2+-binding kinase in 99.5 1.1E-11 2.4E-16 73.0 12.8 142 4-149 21-178 (189)
25 cd05027 S-100B S-100B: S-100B 99.5 8.2E-13 1.8E-17 73.3 7.7 65 84-148 8-79 (88)
26 KOG0037 Ca2+-binding protein, 99.4 1.5E-12 3.2E-17 81.7 9.4 125 11-148 94-220 (221)
27 cd05022 S-100A13 S-100A13: S-1 99.4 1.9E-12 4.1E-17 71.8 8.1 70 8-77 5-77 (89)
28 smart00027 EH Eps15 homology d 99.4 9.3E-12 2E-16 70.5 9.4 71 4-76 3-73 (96)
29 cd05029 S-100A6 S-100A6: S-100 99.4 3.6E-12 7.8E-17 70.7 7.4 66 84-149 10-80 (88)
30 cd05031 S-100A10_like S-100A10 99.4 2.5E-12 5.4E-17 72.6 6.8 66 84-149 8-80 (94)
31 PF13833 EF-hand_8: EF-hand do 99.4 4.9E-12 1.1E-16 64.0 6.5 52 97-148 1-53 (54)
32 KOG0028 Ca2+-binding protein ( 99.4 3.9E-11 8.4E-16 71.8 10.9 103 47-150 33-136 (172)
33 KOG0034 Ca2+/calmodulin-depend 99.4 1.8E-11 4E-16 76.6 10.1 100 14-113 69-176 (187)
34 cd05027 S-100B S-100B: S-100B 99.4 1.9E-11 4.1E-16 67.9 9.0 69 8-76 5-80 (88)
35 cd05025 S-100A1 S-100A1: S-100 99.4 8.2E-12 1.8E-16 70.2 7.7 67 83-149 8-81 (92)
36 cd05026 S-100Z S-100Z: S-100Z 99.4 7.5E-12 1.6E-16 70.3 7.4 66 84-149 10-82 (93)
37 cd00052 EH Eps15 homology doma 99.3 1.3E-11 2.9E-16 65.2 6.5 60 87-148 2-61 (67)
38 cd05029 S-100A6 S-100A6: S-100 99.3 6.1E-11 1.3E-15 65.8 8.9 70 7-76 6-80 (88)
39 cd00051 EFh EF-hand, calcium b 99.3 3.4E-11 7.5E-16 62.4 7.6 61 86-146 2-62 (63)
40 smart00027 EH Eps15 homology d 99.3 3.1E-11 6.7E-16 68.4 7.8 65 82-148 8-72 (96)
41 PLN02964 phosphatidylserine de 99.3 9.7E-11 2.1E-15 85.5 11.9 119 26-148 119-243 (644)
42 cd00213 S-100 S-100: S-100 dom 99.3 3.5E-11 7.7E-16 67.1 7.1 66 83-148 7-79 (88)
43 cd05023 S-100A11 S-100A11: S-1 99.3 5.5E-11 1.2E-15 66.1 7.7 66 84-149 9-81 (89)
44 cd00213 S-100 S-100: S-100 dom 99.3 6.7E-11 1.5E-15 66.0 8.0 70 7-76 4-80 (88)
45 cd05026 S-100Z S-100Z: S-100Z 99.2 1.6E-10 3.5E-15 64.9 8.9 70 8-77 7-83 (93)
46 PF13833 EF-hand_8: EF-hand do 99.2 1.2E-10 2.5E-15 58.9 7.5 52 24-75 1-53 (54)
47 cd05025 S-100A1 S-100A1: S-100 99.2 1.9E-10 4.1E-15 64.6 9.0 68 10-77 8-82 (92)
48 KOG2643 Ca2+ binding protein, 99.2 1.9E-10 4.1E-15 79.0 10.2 131 12-148 319-453 (489)
49 KOG0040 Ca2+-binding actin-bun 99.2 5.5E-10 1.2E-14 86.4 13.5 136 4-147 2246-2397(2399)
50 cd05031 S-100A10_like S-100A10 99.2 2E-10 4.3E-15 64.8 8.6 68 9-76 6-80 (94)
51 cd00052 EH Eps15 homology doma 99.2 1.4E-10 2.9E-15 61.3 7.1 61 14-76 2-62 (67)
52 PF14658 EF-hand_9: EF-hand do 99.2 1.9E-10 4.2E-15 59.2 6.9 61 88-148 2-64 (66)
53 cd00252 SPARC_EC SPARC_EC; ext 99.2 2.3E-10 5.1E-15 66.5 7.2 62 82-147 46-107 (116)
54 cd00051 EFh EF-hand, calcium b 99.2 4.1E-10 8.9E-15 58.2 7.7 61 13-73 2-62 (63)
55 KOG2562 Protein phosphatase 2 99.2 1E-09 2.2E-14 76.0 11.3 137 4-144 271-420 (493)
56 KOG0036 Predicted mitochondria 99.1 1.1E-09 2.5E-14 74.8 10.8 100 46-150 13-112 (463)
57 cd05023 S-100A11 S-100A11: S-1 99.1 1.6E-09 3.4E-14 60.3 8.9 70 7-76 5-81 (89)
58 cd05030 calgranulins Calgranul 99.1 6.8E-10 1.5E-14 61.7 6.6 66 84-149 8-80 (88)
59 PF14658 EF-hand_9: EF-hand do 99.1 2E-09 4.3E-14 55.5 7.2 62 15-76 2-65 (66)
60 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.8E-09 6.2E-14 62.0 7.5 63 44-111 45-107 (116)
61 cd05030 calgranulins Calgranul 99.0 6E-09 1.3E-13 57.9 7.6 69 8-76 5-80 (88)
62 KOG4251 Calcium binding protei 98.9 9.8E-09 2.1E-13 66.0 7.6 139 8-146 98-307 (362)
63 PF12763 EF-hand_4: Cytoskelet 98.9 1.4E-08 3E-13 57.9 7.3 70 4-76 3-72 (104)
64 KOG2643 Ca2+ binding protein, 98.9 3.5E-08 7.6E-13 68.2 10.4 129 13-147 235-383 (489)
65 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.5E-13 63.7 7.3 77 66-148 87-163 (244)
66 KOG0030 Myosin essential light 98.9 7.1E-08 1.5E-12 56.7 10.1 105 45-150 9-118 (152)
67 KOG0041 Predicted Ca2+-binding 98.9 7.3E-08 1.6E-12 60.1 10.1 110 4-113 92-204 (244)
68 KOG0751 Mitochondrial aspartat 98.8 6E-08 1.3E-12 68.2 9.8 141 5-148 27-175 (694)
69 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.8E-13 44.3 3.7 27 122-148 2-28 (29)
70 cd05024 S-100A10 S-100A10: A s 98.7 1.6E-07 3.4E-12 51.9 7.8 65 84-149 8-77 (91)
71 PF00036 EF-hand_1: EF hand; 98.7 2.4E-08 5.1E-13 43.5 3.4 27 86-112 2-28 (29)
72 PF12763 EF-hand_4: Cytoskelet 98.7 2.2E-07 4.7E-12 53.0 8.1 64 81-147 7-70 (104)
73 KOG0169 Phosphoinositide-speci 98.7 7.4E-07 1.6E-11 65.7 12.5 138 6-148 131-274 (746)
74 KOG0038 Ca2+-binding kinase in 98.7 2.7E-07 5.9E-12 54.8 7.8 100 14-113 74-178 (189)
75 KOG0031 Myosin regulatory ligh 98.7 1.8E-06 3.8E-11 51.9 10.9 99 47-150 32-131 (171)
76 cd05024 S-100A10 S-100A10: A s 98.6 1.1E-06 2.5E-11 48.6 8.7 68 8-76 5-77 (91)
77 PF14788 EF-hand_10: EF hand; 98.6 4.8E-07 1E-11 44.1 6.3 50 27-76 1-50 (51)
78 PF14788 EF-hand_10: EF hand; 98.6 2.8E-07 6.1E-12 44.9 5.4 50 100-149 1-50 (51)
79 PF13405 EF-hand_6: EF-hand do 98.5 2.1E-07 4.6E-12 41.2 4.0 30 12-41 1-31 (31)
80 KOG1029 Endocytic adaptor prot 98.5 4.9E-06 1.1E-10 61.7 12.6 138 5-147 10-256 (1118)
81 PF13405 EF-hand_6: EF-hand do 98.5 2E-07 4.4E-12 41.3 3.4 26 86-111 2-27 (31)
82 KOG2562 Protein phosphatase 2 98.5 1.3E-06 2.7E-11 61.2 8.3 131 12-146 226-377 (493)
83 PRK12309 transaldolase/EF-hand 98.5 1.4E-06 3.1E-11 60.9 8.1 54 83-149 333-386 (391)
84 KOG4666 Predicted phosphate ac 98.4 1.1E-06 2.3E-11 59.0 6.1 101 47-148 259-359 (412)
85 KOG0046 Ca2+-binding actin-bun 98.3 5.5E-06 1.2E-10 59.0 8.2 75 2-77 10-87 (627)
86 PF13202 EF-hand_5: EF hand; P 98.3 1.1E-06 2.4E-11 36.8 2.9 21 88-108 3-23 (25)
87 KOG0377 Protein serine/threoni 98.3 4.3E-06 9.3E-11 58.4 7.1 71 43-113 543-616 (631)
88 KOG0751 Mitochondrial aspartat 98.3 7.5E-06 1.6E-10 58.0 8.0 122 20-143 83-239 (694)
89 KOG0040 Ca2+-binding actin-bun 98.3 3.6E-06 7.7E-11 66.4 6.7 65 84-148 2253-2324(2399)
90 PF13202 EF-hand_5: EF hand; P 98.2 2.5E-06 5.5E-11 35.7 3.4 24 13-36 1-24 (25)
91 PRK12309 transaldolase/EF-hand 98.2 1.3E-05 2.7E-10 56.3 7.9 59 41-113 328-386 (391)
92 KOG1707 Predicted Ras related/ 98.2 2.3E-05 5E-10 56.8 9.0 141 2-144 186-373 (625)
93 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.1E-06 2.3E-11 51.1 1.4 62 82-145 52-113 (113)
94 KOG4251 Calcium binding protei 97.9 6.4E-05 1.4E-09 48.9 6.6 67 46-112 100-168 (362)
95 PF09279 EF-hand_like: Phospho 97.9 4.9E-05 1.1E-09 41.7 5.4 62 86-148 2-69 (83)
96 KOG4666 Predicted phosphate ac 97.9 8.8E-05 1.9E-09 50.1 6.8 102 11-114 259-361 (412)
97 PF05042 Caleosin: Caleosin re 97.8 0.00041 8.9E-09 42.9 8.8 136 9-145 5-163 (174)
98 PF10591 SPARC_Ca_bdg: Secrete 97.8 6.8E-06 1.5E-10 47.8 0.7 60 45-107 52-111 (113)
99 KOG0046 Ca2+-binding actin-bun 97.7 0.00019 4.1E-09 51.5 7.0 64 84-148 19-85 (627)
100 KOG4065 Uncharacterized conser 97.7 0.00037 8E-09 40.0 6.2 60 86-145 69-142 (144)
101 PF09279 EF-hand_like: Phospho 97.6 0.00054 1.2E-08 37.5 6.0 63 13-76 2-70 (83)
102 smart00054 EFh EF-hand, calciu 97.5 0.00016 3.4E-09 30.5 3.1 24 124-147 4-27 (29)
103 smart00054 EFh EF-hand, calciu 97.4 0.00031 6.6E-09 29.5 3.1 26 13-38 2-27 (29)
104 KOG0035 Ca2+-binding actin-bun 97.3 0.0061 1.3E-07 46.9 10.9 105 3-108 739-848 (890)
105 KOG1955 Ral-GTPase effector RA 97.1 0.0025 5.4E-08 45.8 6.5 71 4-76 224-294 (737)
106 PLN02952 phosphoinositide phos 97.1 0.0094 2E-07 44.4 9.5 87 61-148 14-110 (599)
107 KOG1955 Ral-GTPase effector RA 97.0 0.002 4.4E-08 46.2 5.4 65 82-148 229-293 (737)
108 KOG0042 Glycerol-3-phosphate d 96.9 0.0043 9.3E-08 45.4 6.5 74 4-77 586-659 (680)
109 KOG4065 Uncharacterized conser 96.9 0.0059 1.3E-07 35.2 5.7 66 5-72 63-142 (144)
110 KOG3555 Ca2+-binding proteogly 96.9 0.0031 6.7E-08 43.3 4.9 108 12-125 212-322 (434)
111 KOG0998 Synaptic vesicle prote 96.8 0.002 4.3E-08 49.9 4.2 138 4-146 122-343 (847)
112 PF05517 p25-alpha: p25-alpha 96.6 0.023 4.9E-07 35.1 7.3 61 89-149 7-70 (154)
113 KOG1265 Phospholipase C [Lipid 96.6 0.24 5.2E-06 38.7 13.3 122 20-148 157-299 (1189)
114 KOG1029 Endocytic adaptor prot 96.4 0.0074 1.6E-07 45.8 4.8 68 6-75 190-257 (1118)
115 KOG1264 Phospholipase C [Lipid 96.3 0.065 1.4E-06 41.4 9.1 137 11-148 144-293 (1267)
116 KOG2243 Ca2+ release channel ( 96.2 0.011 2.3E-07 48.0 5.0 59 88-147 4061-4119(5019)
117 PF05517 p25-alpha: p25-alpha 96.1 0.13 2.8E-06 31.8 8.5 63 15-77 3-71 (154)
118 KOG0169 Phosphoinositide-speci 96.0 0.12 2.7E-06 39.3 9.3 98 45-147 134-231 (746)
119 KOG4347 GTPase-activating prot 95.9 0.016 3.6E-07 43.0 4.4 51 84-134 555-605 (671)
120 KOG0998 Synaptic vesicle prote 95.7 0.018 3.9E-07 44.9 4.2 141 2-147 2-189 (847)
121 PF05042 Caleosin: Caleosin re 95.5 0.13 2.9E-06 32.1 6.6 30 118-147 94-123 (174)
122 KOG3555 Ca2+-binding proteogly 95.4 0.032 7E-07 38.5 4.2 62 82-147 248-309 (434)
123 KOG4578 Uncharacterized conser 95.3 0.02 4.3E-07 39.2 2.9 27 84-110 370-396 (421)
124 KOG4578 Uncharacterized conser 95.0 0.015 3.2E-07 39.8 1.8 65 83-147 332-397 (421)
125 PF08726 EFhand_Ca_insen: Ca2+ 95.0 0.029 6.2E-07 29.6 2.4 57 82-146 4-67 (69)
126 KOG4347 GTPase-activating prot 95.0 0.3 6.6E-06 36.7 8.2 102 3-106 496-612 (671)
127 KOG3866 DNA-binding protein of 94.8 0.11 2.5E-06 35.5 5.3 61 86-146 246-322 (442)
128 PF09069 EF-hand_3: EF-hand; 94.6 0.4 8.6E-06 26.7 7.6 61 84-147 3-74 (90)
129 KOG1707 Predicted Ras related/ 94.5 0.18 3.9E-06 37.5 6.2 71 3-76 307-378 (625)
130 PLN02952 phosphoinositide phos 94.5 0.84 1.8E-05 34.6 9.7 87 24-111 13-109 (599)
131 KOG0042 Glycerol-3-phosphate d 94.4 0.12 2.6E-06 38.3 5.0 63 86-148 595-657 (680)
132 PF08414 NADPH_Ox: Respiratory 94.1 0.51 1.1E-05 26.7 6.1 63 9-76 28-93 (100)
133 cd07313 terB_like_2 tellurium 94.0 0.42 9E-06 27.2 6.0 84 24-109 12-97 (104)
134 PF14513 DAG_kinase_N: Diacylg 93.4 0.86 1.9E-05 27.6 6.7 70 26-97 6-82 (138)
135 KOG0035 Ca2+-binding actin-bun 93.1 0.43 9.3E-06 37.5 6.2 65 84-148 747-816 (890)
136 KOG2243 Ca2+ release channel ( 92.9 0.3 6.5E-06 40.4 5.2 58 16-74 4062-4119(5019)
137 PF12174 RST: RCD1-SRO-TAF4 (R 90.5 0.77 1.7E-05 24.3 3.7 49 61-113 6-54 (70)
138 PLN02222 phosphoinositide phos 90.5 1.6 3.5E-05 33.0 6.6 30 45-76 23-52 (581)
139 PLN02228 Phosphoinositide phos 90.2 2.2 4.8E-05 32.2 7.1 64 45-110 22-90 (567)
140 PF11116 DUF2624: Protein of u 89.4 2.3 5.1E-05 23.4 5.6 34 100-133 14-47 (85)
141 PF09069 EF-hand_3: EF-hand; 89.3 2.5 5.4E-05 23.6 7.6 63 11-76 3-76 (90)
142 KOG3866 DNA-binding protein of 89.0 0.9 2E-05 31.3 4.1 61 16-76 249-325 (442)
143 PLN02230 phosphoinositide phos 88.9 3.1 6.7E-05 31.7 7.1 65 83-148 28-102 (598)
144 COG4103 Uncharacterized protei 88.8 3.7 8.1E-05 24.9 7.0 92 15-110 34-127 (148)
145 PF07308 DUF1456: Protein of u 87.7 2.7 5.9E-05 22.1 5.2 47 101-147 14-60 (68)
146 KOG2871 Uncharacterized conser 86.8 0.93 2E-05 32.0 3.1 62 83-144 308-370 (449)
147 PF08976 DUF1880: Domain of un 86.3 1.1 2.3E-05 26.2 2.7 31 44-74 4-34 (118)
148 PF12174 RST: RCD1-SRO-TAF4 (R 85.4 3.9 8.5E-05 21.6 5.2 50 25-77 6-55 (70)
149 PLN02222 phosphoinositide phos 84.5 6.3 0.00014 30.0 6.7 62 12-75 26-90 (581)
150 KOG2301 Voltage-gated Ca2+ cha 84.3 2.5 5.5E-05 35.9 4.9 72 4-76 1410-1485(1592)
151 PF02761 Cbl_N2: CBL proto-onc 83.9 5.4 0.00012 22.0 6.2 68 44-113 4-71 (85)
152 PLN02223 phosphoinositide phos 83.6 6.3 0.00014 29.7 6.3 64 84-148 16-92 (537)
153 PF08726 EFhand_Ca_insen: Ca2+ 83.4 2.3 4.9E-05 22.5 3.0 53 11-71 6-65 (69)
154 PLN02228 Phosphoinositide phos 83.3 9.6 0.00021 29.0 7.2 66 6-76 22-93 (567)
155 PF00404 Dockerin_1: Dockerin 82.9 2.1 4.5E-05 16.8 2.1 17 21-37 1-17 (21)
156 PRK09430 djlA Dna-J like membr 82.0 14 0.0003 25.3 8.8 101 23-128 67-174 (267)
157 cd07316 terB_like_DjlA N-termi 81.6 7.4 0.00016 21.9 6.4 83 24-108 12-97 (106)
158 PF11116 DUF2624: Protein of u 81.3 7.1 0.00015 21.5 7.6 68 26-93 13-82 (85)
159 KOG0039 Ferric reductase, NADH 81.3 6 0.00013 30.6 5.7 64 47-111 18-88 (646)
160 PF05099 TerB: Tellurite resis 81.2 1.3 2.7E-05 26.6 1.8 80 24-105 36-117 (140)
161 KOG2871 Uncharacterized conser 80.7 2.2 4.8E-05 30.3 3.0 64 10-73 308-372 (449)
162 KOG1265 Phospholipase C [Lipid 80.6 29 0.00063 28.2 9.5 79 31-112 208-299 (1189)
163 cd07313 terB_like_2 tellurium 79.7 3.8 8.3E-05 23.1 3.4 53 61-113 13-66 (104)
164 TIGR01848 PHA_reg_PhaR polyhyd 79.7 9 0.0002 22.1 4.7 21 55-75 11-31 (107)
165 PF01023 S_100: S-100/ICaBP ty 79.7 5.2 0.00011 19.0 4.4 32 8-39 3-36 (44)
166 KOG3449 60S acidic ribosomal p 78.9 10 0.00022 21.9 6.1 59 13-76 3-61 (112)
167 PLN02230 phosphoinositide phos 78.8 15 0.00032 28.3 6.9 64 11-75 29-102 (598)
168 PF09068 EF-hand_2: EF hand; 78.6 12 0.00025 22.4 7.7 26 86-111 99-124 (127)
169 PF09336 Vps4_C: Vps4 C termin 77.5 4.4 9.6E-05 20.8 2.9 26 100-125 29-54 (62)
170 PF08461 HTH_12: Ribonuclease 77.5 4.6 0.0001 21.0 3.0 37 97-133 10-46 (66)
171 COG5562 Phage envelope protein 74.0 2.5 5.4E-05 25.4 1.6 28 123-150 75-102 (137)
172 COG5069 SAC6 Ca2+-binding acti 72.8 12 0.00026 27.8 4.9 86 4-93 478-563 (612)
173 KOG4286 Dystrophin-like protei 72.6 39 0.00084 26.9 7.6 133 10-147 419-579 (966)
174 TIGR01639 P_fal_TIGR01639 Plas 70.1 13 0.00028 19.0 3.8 31 26-56 8-38 (61)
175 PF02761 Cbl_N2: CBL proto-onc 69.1 17 0.00037 20.1 6.6 51 25-75 20-70 (85)
176 PF03672 UPF0154: Uncharacteri 69.1 14 0.00031 19.1 3.7 32 98-129 29-60 (64)
177 KOG4004 Matricellular protein 68.8 2.1 4.6E-05 27.6 0.5 49 96-146 200-248 (259)
178 PF14513 DAG_kinase_N: Diacylg 68.2 25 0.00053 21.5 6.2 33 98-130 46-79 (138)
179 cd07176 terB tellurite resista 67.8 14 0.0003 20.9 3.8 80 24-106 15-99 (111)
180 KOG3449 60S acidic ribosomal p 67.7 22 0.00047 20.7 4.8 43 88-130 5-47 (112)
181 PF01885 PTS_2-RNA: RNA 2'-pho 65.8 16 0.00035 23.4 4.1 37 94-130 26-62 (186)
182 PRK00819 RNA 2'-phosphotransfe 65.6 23 0.00049 22.6 4.6 33 96-128 29-61 (179)
183 PF01885 PTS_2-RNA: RNA 2'-pho 65.5 19 0.00042 23.1 4.4 38 21-58 26-63 (186)
184 TIGR03573 WbuX N-acetyl sugar 64.6 23 0.00051 25.1 5.0 43 98-146 300-342 (343)
185 KOG0506 Glutaminase (contains 64.4 28 0.0006 26.1 5.3 61 15-75 90-158 (622)
186 PTZ00373 60S Acidic ribosomal 63.9 27 0.00059 20.4 4.8 41 90-130 9-49 (112)
187 PLN02223 phosphoinositide phos 63.4 49 0.0011 25.2 6.6 64 11-75 16-92 (537)
188 PF03979 Sigma70_r1_1: Sigma-7 62.5 8.5 0.00019 20.9 2.1 30 98-129 19-48 (82)
189 PRK00523 hypothetical protein; 62.4 22 0.00048 18.9 3.7 32 98-129 37-68 (72)
190 PF13623 SurA_N_2: SurA N-term 62.1 34 0.00075 21.0 7.7 78 62-146 47-145 (145)
191 TIGR02787 codY_Gpos GTP-sensin 61.8 43 0.00093 22.7 5.5 48 4-57 176-223 (251)
192 TIGR00624 tag DNA-3-methyladen 60.3 33 0.00073 21.9 4.7 105 8-115 50-168 (179)
193 PF07879 PHB_acc_N: PHB/PHA ac 59.6 23 0.0005 18.4 3.2 20 92-111 11-30 (64)
194 PF12419 DUF3670: SNF2 Helicas 59.4 27 0.00058 21.2 4.1 49 97-145 80-138 (141)
195 cd05833 Ribosomal_P2 Ribosomal 59.3 33 0.00072 19.9 4.8 41 90-130 7-47 (109)
196 KOG4070 Putative signal transd 58.7 12 0.00026 23.1 2.4 29 86-114 59-87 (180)
197 PF10437 Lip_prot_lig_C: Bacte 58.3 28 0.0006 18.9 3.7 43 102-146 43-86 (86)
198 PRK00819 RNA 2'-phosphotransfe 57.9 39 0.00085 21.6 4.7 43 22-67 28-70 (179)
199 KOG1954 Endocytosis/signaling 57.0 32 0.00069 25.1 4.5 56 86-144 446-501 (532)
200 PF13551 HTH_29: Winged helix- 56.6 34 0.00074 19.2 6.6 51 5-55 58-110 (112)
201 KOG3077 Uncharacterized conser 55.8 64 0.0014 22.1 7.3 65 85-149 65-130 (260)
202 PF09107 SelB-wing_3: Elongati 54.5 19 0.00041 17.6 2.3 31 98-133 8-38 (50)
203 COG3763 Uncharacterized protei 53.9 33 0.00071 18.2 3.9 32 98-129 36-67 (71)
204 COG4103 Uncharacterized protei 53.4 41 0.00088 20.7 4.0 11 101-111 83-93 (148)
205 PF07862 Nif11: Nitrogen fixat 52.9 26 0.00056 16.7 2.9 21 102-122 28-48 (49)
206 PF07308 DUF1456: Protein of u 52.6 34 0.00074 18.0 5.2 28 30-57 16-43 (68)
207 PRK01844 hypothetical protein; 52.3 36 0.00078 18.2 3.6 32 98-129 36-67 (72)
208 KOG3077 Uncharacterized conser 51.5 76 0.0017 21.7 10.8 67 10-76 63-130 (260)
209 PF11829 DUF3349: Protein of u 51.1 45 0.00098 19.0 5.4 33 28-60 20-52 (96)
210 KOG4301 Beta-dystrobrevin [Cyt 50.6 28 0.00062 24.7 3.4 61 87-148 113-173 (434)
211 PF06648 DUF1160: Protein of u 50.5 53 0.0011 19.6 5.6 42 84-128 37-79 (122)
212 PRK10353 3-methyl-adenine DNA 50.4 57 0.0012 21.1 4.6 106 8-114 51-170 (187)
213 PRK09430 djlA Dna-J like membr 50.3 50 0.0011 22.6 4.6 10 61-70 69-78 (267)
214 KOG1954 Endocytosis/signaling 49.6 53 0.0011 24.0 4.6 56 14-72 447-502 (532)
215 PF06384 ICAT: Beta-catenin-in 48.2 41 0.00088 18.3 3.1 23 105-127 21-43 (78)
216 PF09312 SurA_N: SurA N-termin 47.9 21 0.00046 20.8 2.3 15 24-38 9-23 (118)
217 PF14771 DUF4476: Domain of un 47.0 50 0.0011 18.3 9.1 49 27-77 4-53 (95)
218 KOG2301 Voltage-gated Ca2+ cha 47.0 23 0.00049 30.7 3.0 66 82-147 1415-1483(1592)
219 COG2818 Tag 3-methyladenine DN 46.3 24 0.00053 22.7 2.4 66 8-74 52-121 (188)
220 KOG1785 Tyrosine kinase negati 46.0 1.2E+02 0.0026 22.3 8.0 86 24-113 187-275 (563)
221 KOG4301 Beta-dystrobrevin [Cyt 45.0 97 0.0021 22.2 5.3 73 4-77 101-175 (434)
222 PLN00138 large subunit ribosom 45.0 64 0.0014 18.9 4.7 35 96-130 13-47 (113)
223 PF09373 PMBR: Pseudomurein-bi 43.9 31 0.00067 15.0 2.1 15 98-112 2-16 (33)
224 PF07499 RuvA_C: RuvA, C-termi 42.3 41 0.00089 16.0 3.6 38 104-145 4-41 (47)
225 TIGR03798 ocin_TIGR03798 bacte 41.9 50 0.0011 16.9 3.3 25 101-125 25-49 (64)
226 PF13624 SurA_N_3: SurA N-term 41.6 41 0.00089 20.4 3.0 83 61-150 47-134 (154)
227 KOG4629 Predicted mechanosensi 41.6 68 0.0015 25.5 4.5 58 84-148 404-461 (714)
228 TIGR01565 homeo_ZF_HD homeobox 41.3 51 0.0011 16.7 4.4 35 3-42 6-44 (58)
229 PF10815 ComZ: ComZ; InterPro 41.3 48 0.001 16.5 3.3 25 105-129 16-40 (56)
230 PF11422 IBP39: Initiator bind 41.2 96 0.0021 19.9 6.9 65 51-116 23-91 (181)
231 PF07128 DUF1380: Protein of u 41.1 68 0.0015 19.6 3.6 31 101-131 27-57 (139)
232 KOG4403 Cell surface glycoprot 41.0 1.2E+02 0.0027 22.5 5.4 65 44-112 65-129 (575)
233 COG4476 Uncharacterized protei 40.8 65 0.0014 17.8 3.5 53 6-58 12-65 (90)
234 PF09454 Vps23_core: Vps23 cor 40.7 16 0.00036 19.0 0.9 16 134-149 37-52 (65)
235 TIGR03581 EF_0839 conserved hy 40.4 1.1E+02 0.0024 20.4 7.0 88 24-112 131-233 (236)
236 PTZ00373 60S Acidic ribosomal 40.2 78 0.0017 18.6 5.1 52 16-72 8-59 (112)
237 PRK04387 hypothetical protein; 39.6 71 0.0015 17.9 4.2 52 6-57 12-64 (90)
238 PF05256 UPF0223: Uncharacteri 39.0 72 0.0016 17.8 4.0 52 6-57 12-64 (88)
239 cd08819 CARD_MDA5_2 Caspase ac 39.0 72 0.0016 17.8 5.5 50 98-150 31-80 (88)
240 PF08044 DUF1707: Domain of un 38.4 54 0.0012 16.2 2.8 29 97-125 20-48 (53)
241 PF04769 MAT_Alpha1: Mating-ty 37.9 1.2E+02 0.0025 20.0 6.2 75 28-102 65-144 (201)
242 TIGR02675 tape_meas_nterm tape 37.8 62 0.0013 17.3 2.9 13 61-73 28-40 (75)
243 cd00086 homeodomain Homeodomai 37.4 53 0.0012 15.9 6.0 45 3-54 5-49 (59)
244 PF03250 Tropomodulin: Tropomo 37.3 43 0.00093 20.6 2.4 22 3-24 22-43 (147)
245 PF07166 DUF1398: Protein of u 36.5 33 0.00071 20.5 1.9 18 133-150 80-97 (125)
246 PHA02105 hypothetical protein 36.4 62 0.0014 16.4 3.7 47 27-73 4-55 (68)
247 KOG0039 Ferric reductase, NADH 34.8 1.7E+02 0.0038 23.0 5.9 24 13-37 20-43 (646)
248 cd07356 HN_L-whirlin_R1_like F 34.5 49 0.0011 17.8 2.1 17 5-21 16-32 (78)
249 PF00046 Homeobox: Homeobox do 33.6 64 0.0014 15.6 6.0 44 3-53 5-48 (57)
250 PF08356 EF_assoc_2: EF hand a 33.0 94 0.002 17.4 5.8 57 3-59 2-60 (89)
251 PF14848 HU-DNA_bdg: DNA-bindi 32.9 1.1E+02 0.0024 18.1 3.9 32 98-129 26-57 (124)
252 cd04411 Ribosomal_P1_P2_L12p R 32.8 1E+02 0.0022 17.8 5.2 44 28-76 17-60 (105)
253 PF05788 Orbi_VP1: Orbivirus R 32.5 58 0.0013 27.1 3.0 40 94-133 1131-1170(1301)
254 PF05383 La: La domain; Inter 32.4 51 0.0011 16.8 2.0 16 20-35 24-39 (61)
255 PRK14074 rpsF 30S ribosomal pr 32.3 1.4E+02 0.0029 20.3 4.3 70 3-75 12-81 (257)
256 PF12486 DUF3702: ImpA domain 32.2 1.3E+02 0.0028 18.7 5.8 30 8-37 66-95 (148)
257 cd00171 Sec7 Sec7 domain; Doma 32.0 1.4E+02 0.0031 19.1 9.7 38 93-130 142-181 (185)
258 COG1859 KptA RNA:NAD 2'-phosph 31.9 1.4E+02 0.0031 19.8 4.3 37 95-131 54-90 (211)
259 PF11848 DUF3368: Domain of un 31.9 67 0.0014 15.4 3.8 31 98-128 15-46 (48)
260 TIGR03573 WbuX N-acetyl sugar 31.6 1.6E+02 0.0035 21.0 4.9 59 39-110 284-342 (343)
261 cd08313 Death_TNFR1 Death doma 30.6 98 0.0021 16.9 3.3 15 136-150 57-71 (80)
262 PF06207 DUF1002: Protein of u 30.2 1.1E+02 0.0023 20.5 3.6 48 102-149 173-224 (225)
263 COG1460 Uncharacterized protei 30.1 1.1E+02 0.0025 18.0 3.3 29 101-129 80-108 (114)
264 cd04790 HTH_Cfa-like_unk Helix 29.8 1.5E+02 0.0033 18.7 5.4 34 97-130 112-146 (172)
265 PRK00034 gatC aspartyl/glutamy 29.5 1.1E+02 0.0023 17.0 3.5 28 101-128 3-30 (95)
266 TIGR00135 gatC glutamyl-tRNA(G 29.4 1.1E+02 0.0023 17.0 3.8 27 101-127 1-27 (93)
267 PF13331 DUF4093: Domain of un 29.1 1.1E+02 0.0024 17.0 8.2 56 63-125 30-85 (87)
268 PF09494 Slx4: Slx4 endonuclea 29.0 91 0.002 16.0 3.6 16 99-114 43-58 (64)
269 PRK10945 gene expression modul 28.1 1E+02 0.0023 16.4 3.2 29 82-114 20-48 (72)
270 PF12872 OST-HTH: OST-HTH/LOTU 27.5 99 0.0021 15.9 5.3 14 98-111 21-34 (74)
271 KOG0506 Glutaminase (contains 27.2 2.4E+02 0.0051 21.6 5.1 59 88-146 90-156 (622)
272 PF08006 DUF1700: Protein of u 27.2 82 0.0018 19.9 2.7 14 65-78 2-15 (181)
273 PF13121 DUF3976: Domain of un 26.7 53 0.0011 14.8 1.2 21 20-40 7-27 (41)
274 PF10897 DUF2713: Protein of u 26.3 2E+02 0.0043 19.0 4.3 18 120-137 209-226 (246)
275 PF02864 STAT_bind: STAT prote 26.3 1.6E+02 0.0034 20.2 3.9 47 98-144 176-231 (254)
276 KOG4629 Predicted mechanosensi 26.0 2.4E+02 0.0052 22.7 5.2 56 50-113 407-462 (714)
277 COG1508 RpoN DNA-directed RNA 25.6 2.9E+02 0.0064 20.8 7.3 47 24-72 122-171 (444)
278 KOG4403 Cell surface glycoprot 25.2 3E+02 0.0065 20.7 5.5 61 10-74 67-128 (575)
279 PLN02508 magnesium-protoporphy 25.0 1.3E+02 0.0028 21.5 3.4 89 41-135 35-125 (357)
280 PF10841 DUF2644: Protein of u 24.7 95 0.002 15.9 2.1 16 131-146 5-20 (60)
281 PF06627 DUF1153: Protein of u 24.6 95 0.0021 17.4 2.2 32 98-134 47-78 (90)
282 smart00513 SAP Putative DNA-bi 24.6 79 0.0017 13.8 2.6 18 100-117 3-20 (35)
283 PRK10391 oriC-binding nucleoid 23.8 1.3E+02 0.0028 16.0 2.7 12 82-93 15-26 (71)
284 PTZ00315 2'-phosphotransferase 23.7 2.2E+02 0.0047 22.3 4.6 38 94-131 399-436 (582)
285 PRK10788 periplasmic folding c 23.6 3.5E+02 0.0075 21.2 5.8 50 101-150 96-146 (623)
286 KOG2623 Tyrosyl-tRNA synthetas 23.6 3.2E+02 0.0068 20.4 7.7 19 95-113 370-388 (467)
287 cd07357 HN_L-whirlin_R2_like S 23.5 72 0.0016 17.4 1.6 13 98-110 33-45 (81)
288 PF05872 DUF853: Bacterial pro 23.2 1.8E+02 0.004 22.0 4.0 36 5-40 122-157 (502)
289 TIGR01209 RNA ligase, Pab1020 23.1 3.1E+02 0.0067 20.1 5.5 96 17-112 163-271 (374)
290 PF08730 Rad33: Rad33; InterP 22.9 2.1E+02 0.0047 18.2 10.7 38 5-43 8-45 (170)
291 PF01475 FUR: Ferric uptake re 22.8 1.7E+02 0.0036 16.9 3.4 30 27-56 23-52 (120)
292 PHA00003 B internal scaffoldin 22.7 1E+02 0.0023 17.9 2.2 34 38-72 76-109 (120)
293 KOG2278 RNA:NAD 2'-phosphotran 22.7 1.4E+02 0.003 19.2 2.9 37 94-130 28-64 (207)
294 cd06403 PB1_Par6 The PB1 domai 22.5 39 0.00085 18.4 0.5 8 138-145 23-30 (80)
295 KOG4718 Non-SMC (structural ma 22.4 2.5E+02 0.0054 18.8 4.7 57 1-57 89-147 (235)
296 PF11363 DUF3164: Protein of u 22.3 2.4E+02 0.0051 18.5 4.8 39 88-129 123-161 (195)
297 KOG2419 Phosphatidylserine dec 22.1 82 0.0018 24.8 2.2 66 9-74 435-532 (975)
298 PRK09462 fur ferric uptake reg 21.8 2E+02 0.0043 17.5 4.7 31 26-56 32-62 (148)
299 PRK06402 rpl12p 50S ribosomal 21.8 1.8E+02 0.0039 16.9 5.0 31 100-130 16-46 (106)
300 PRK14981 DNA-directed RNA poly 21.8 1.8E+02 0.0039 16.9 3.6 12 45-56 48-59 (112)
301 PF09851 SHOCT: Short C-termin 21.7 89 0.0019 13.3 1.6 11 98-108 14-24 (31)
302 PF02037 SAP: SAP domain; Int 21.7 94 0.002 13.6 2.2 17 100-116 3-19 (35)
303 PF07962 Swi3: Replication For 21.6 1E+02 0.0022 16.8 2.1 17 134-150 50-66 (83)
304 PF04433 SWIRM: SWIRM domain; 21.5 73 0.0016 17.3 1.5 16 59-74 49-64 (86)
305 PF13730 HTH_36: Helix-turn-he 21.4 1.2E+02 0.0025 14.6 6.1 49 3-56 1-49 (55)
306 PF08411 Exonuc_X-T_C: Exonucl 21.4 1E+02 0.0022 21.2 2.4 33 4-37 208-242 (269)
307 PF01325 Fe_dep_repress: Iron 21.3 1.3E+02 0.0028 15.1 4.8 53 5-66 2-54 (60)
308 PF00690 Cation_ATPase_N: Cati 21.2 1.4E+02 0.0029 15.3 2.9 29 87-115 7-35 (69)
309 PF02885 Glycos_trans_3N: Glyc 21.0 1.4E+02 0.003 15.3 5.4 16 42-57 13-28 (66)
310 COG0721 GatC Asp-tRNAAsn/Glu-t 20.9 1.8E+02 0.0038 16.5 3.6 29 100-128 2-30 (96)
311 cd07894 Adenylation_RNA_ligase 20.9 3.3E+02 0.0072 19.6 5.2 37 22-58 136-182 (342)
312 PF14647 FAM91_N: FAM91 N-term 20.8 2.7E+02 0.0058 19.7 4.2 49 59-111 223-271 (308)
313 PF08349 DUF1722: Protein of u 20.8 1.7E+02 0.0036 17.1 3.0 15 97-111 82-96 (117)
314 cd06404 PB1_aPKC PB1 domain is 20.7 40 0.00087 18.6 0.3 22 118-139 57-78 (83)
315 cd00076 H4 Histone H4, one of 20.5 1.7E+02 0.0037 16.2 7.8 66 43-116 13-81 (85)
316 PF03352 Adenine_glyco: Methyl 20.3 59 0.0013 20.8 1.1 105 9-114 47-165 (179)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=160.63 Aligned_cols=146 Identities=52% Similarity=0.874 Sum_probs=140.4
Q ss_pred CccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCC
Q 031903 2 SEVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETD 81 (150)
Q Consensus 2 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~ 81 (150)
.++++++++.+|+++|..+|++++|.|+..++..+++.+|...+.+++.+++..++. +++.|+|.+|+.++........
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 468999999999999999999999999999999999999999999999999999998 8899999999999998887777
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..+.+..+|+.||.+++|+|+..+++.+++..|..+++++++.++..+|.+++|.|+|++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=3e-28 Score=149.07 Aligned_cols=145 Identities=64% Similarity=1.000 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCCh--
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDA-- 82 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~-- 82 (150)
++..+...+..+|..+|++++|+|+..++..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 678889999999999999999999999999999999999999999999999999999999999999999877654333
Q ss_pred --HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 --EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 --~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
.+.++.+|+.+|.+++|+|+.+|++.++..+|.+.+.+++..+++.+|.+++|.|+|.+|++.+...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999999999999999999999999999988653
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.96 E-value=7.7e-27 Score=142.81 Aligned_cols=148 Identities=76% Similarity=1.154 Sum_probs=137.2
Q ss_pred CCccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC
Q 031903 1 MSEVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET 80 (150)
Q Consensus 1 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~ 80 (150)
|+.+++++++..+...|..+|++++|.|+..+|..++..++..++.+.+..++..++.+++|.|++++|+.++.......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 56789999999999999999999999999999999999888888889999999999999999999999999988765544
Q ss_pred ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 81 DAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.....+..+|+.+|.+++|.|+.++|..++...|.+++..++..++..+|.+++|.|+|+||+.++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 56678899999999999999999999999999999999999999999999999999999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=3.5e-26 Score=141.23 Aligned_cols=146 Identities=46% Similarity=0.785 Sum_probs=135.6
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCCh
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDA 82 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~ 82 (150)
.++++.++..+..+|..+|++++|.|+..+|..+++.++...+...+..++..++.+++|.|++.+|+..+.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 56899999999999999999999999999999999999888899999999999999999999999999988765444456
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
...+..+|+.+|.+++|.|+..+|..++...|.++++.++..++..+|.+++|.|++++|..++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999999998865
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.9e-25 Score=130.71 Aligned_cols=147 Identities=46% Similarity=0.743 Sum_probs=140.2
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCCh
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDA 82 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~ 82 (150)
..+++++...++..|..+|++.+|+|+..++..+++++|......++.++...++.++.|.|++++|...+...+.....
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 35778888999999999999999999999999999999999999999999999999999999999999999888877778
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
.+.+..+|+.+|-+++|.|+..+|+.+...+|..++++++..++..+|.+++|.|+.+||..++...
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=4.7e-23 Score=121.16 Aligned_cols=140 Identities=38% Similarity=0.686 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAE 83 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~ 83 (150)
.+++.++.++++.|..+|.|+||.|..+++...+.++|...+++++..++... .|.|+|..|+.++...+...+.+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHH
Confidence 57889999999999999999999999999999999999889999999988654 68999999999999999988999
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
+.+..+|+.||.+++|+|..+.++++|...|..++++++..+++.+-.+..|.|+|..|+..+.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-21 Score=120.54 Aligned_cols=142 Identities=32% Similarity=0.613 Sum_probs=120.5
Q ss_pred ccCCHHHHHHHHHHhhhhcCC-CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCc-eeHHHHHHHHHHHcccC
Q 031903 3 EVLTNEQIVEFKEAFCLFDKD-GDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGT-IEFGEFLNLMAKKMKET 80 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~-~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-v~~~ef~~~~~~~~~~~ 80 (150)
+.++..|+.++...|.++|++ ++|+++.++|..+... ...+...+++..++.+++|. |++++|+..+.......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~----~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL----ALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH----hcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 358999999999999999999 9999999999998732 22234567888888877777 99999999999888777
Q ss_pred ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCC--HHH----HHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 81 DAEEELKEAFKVFDKDQNGYISATELRHVMINL-GEKLT--DDE----VEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
...+.++.+|+.||.+++|+|+.+|+.+++..+ +...+ ++. ++.++..+|.++||.|+++||.+++.+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 777799999999999999999999999999976 33344 333 466788999999999999999998865
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=9.2e-21 Score=117.91 Aligned_cols=132 Identities=27% Similarity=0.467 Sum_probs=122.9
Q ss_pred HHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHH
Q 031903 10 IVEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKE 88 (150)
Q Consensus 10 ~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (150)
...+...|...|+++.|.|+.+++.++|.... ...+.+.++.+...+|.+..|+|.+.||..++... ..|+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 45788999999999999999999999998655 67899999999999999999999999999999755 57999
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 89 AFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
+|+.+|+|++|.|+..|++++|..+|..++++-.+.+++.||....|.|.+++|+++++.
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999999998864
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=3.7e-20 Score=107.26 Aligned_cols=144 Identities=41% Similarity=0.726 Sum_probs=127.7
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC--CCCceeHHHHHHHHHHHccc--
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSD--RNGTIEFGEFLNLMAKKMKE-- 79 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~v~~~ef~~~~~~~~~~-- 79 (150)
..+++....++.+|..+|..++|.|+..+.-.+++++|.+++..++.+....+..+ +-.+++|++|+.++......
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999999999999999999999999888766 45789999999999876543
Q ss_pred CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 80 TDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
...-+.+.+-++.||++++|.|...+++.+|..+|..++++++..++.-.. |.+|.|.|+.|++.+++
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 334577888999999999999999999999999999999999999887764 77899999999998764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.84 E-value=3.5e-19 Score=111.07 Aligned_cols=142 Identities=24% Similarity=0.454 Sum_probs=118.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCC
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQ-NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETD 81 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~ 81 (150)
|.+++.++..+.+-|..-. +.|.++..+|..++..+.. .-+...+..+|+.+|.+++|.|++.||+..+.......
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt- 97 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT- 97 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-
Confidence 5678888888888887743 5899999999999998874 55667788999999999999999999999998776654
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINL----GE-------KLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
..+.+..+|+.||.+++|+|+.+|+..++... +. ...++.+..+|+.+|.|+||.||++||+....
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 66788888999999999999999999988754 31 11345678999999999999999999997654
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.84 E-value=3.1e-19 Score=120.27 Aligned_cols=140 Identities=22% Similarity=0.474 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCCh
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQN-PTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDA 82 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~ 82 (150)
...++.-.+++..|..+|.+++|.++..++.+.+..+..+ .....+..++..+|.+.+|.|+|.+|.+.+.. .
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence 3567778899999999999999999999999999998866 67777889999999999999999999999864 3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
+..+..+|+.+|.+++|.|+.+|+.+.++.+|.++++++++.++++.|+++++.|+++||.+++...
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 4578999999999999999999999999999999999999999999999999999999999887643
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-14 Score=88.64 Aligned_cols=104 Identities=29% Similarity=0.459 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCC-----CHH
Q 031903 46 EEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKL-----TDD 120 (150)
Q Consensus 46 ~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~-----~~~ 120 (150)
..++..+|..+|.+++|.|+..++..+++.+...+ ....+..+++.+|.+++|.|+..+|..++....... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 35678899999999999999999999998776654 778999999999999999999999999998765332 345
Q ss_pred HHHHHHHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 121 EVEQMINEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 121 ~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
++..+|+.+|.+++|.|+..|+..++..+|
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999999876
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.61 E-value=3.9e-14 Score=102.77 Aligned_cols=105 Identities=23% Similarity=0.355 Sum_probs=93.2
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHH---HHHHHHhhcCCCCCceeHHHHHHHHHHHcc
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEE---LQDMINEVDSDRNGTIEFGEFLNLMAKKMK 78 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~ 78 (150)
+.+..+++..+.+.|..+|++++|.+ +..+++.+| ..+++.+ +..++..+|.+++|.|+++||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 35788899999999999999999997 777888888 5777776 78999999999999999999999998643
Q ss_pred cCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 031903 79 ETDAEEELKEAFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 79 ~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
....++.+..+|+.+|.+++|.|+.+||.+++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3456778999999999999999999999999988
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=82.29 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLG-EKLTDDEVEQM 125 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~ 125 (150)
+++++.|..+|.+++|.|+..++..+++ .+........+.+++..+|. +.|.|++.+|..++...- ..-+++++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 3466788888999999999999999998 44555577899999999999 999999999999998664 55668999999
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
|+.||.|++|.|+..++..++..+|
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHhhc
Confidence 9999999999999999999998775
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.55 E-value=3.4e-14 Score=75.10 Aligned_cols=61 Identities=51% Similarity=0.943 Sum_probs=53.8
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLGEKLTDD----EVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
++.+|+.+|.+++|+|+.+||..++...+...++. .+..+++.+|+|++|.|+++||++++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999998766554 45556999999999999999999875
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.4e-14 Score=92.71 Aligned_cols=136 Identities=23% Similarity=0.418 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC----ChH
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQ-NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET----DAE 83 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~----~~~ 83 (150)
.+.+-.+.|...|.+++|.++.++|..++.--.. .+..--+..-+..+|+|++|.|+++||+.-+...-... -..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 3456788999999999999999999998754332 22333355667778999999999999998886554211 111
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVK 144 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 144 (150)
..-.+.+...|.|++|+++.+|++..+...+......++..++...|.|+||++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 2345778888999999999999999998888778889999999999999999999999764
No 17
>PTZ00183 centrin; Provisional
Probab=99.54 E-value=4.6e-13 Score=82.57 Aligned_cols=103 Identities=24% Similarity=0.359 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL-GEKLTDDEVEQM 125 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~ 125 (150)
.++..+|..+|.+++|.|+..+|..++..... ......+..+|..+|.+++|.|+.++|..++... ....+...+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45677889999999999999999999975532 2345679999999999999999999999987654 344566788999
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
|+.+|.+++|.|+.+||..++..+|
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 9999999999999999999987653
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.53 E-value=4.5e-14 Score=78.22 Aligned_cols=67 Identities=19% Similarity=0.407 Sum_probs=61.2
Q ss_pred HHHHHHHhhhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 EEELKEAFKVFDK-DQNGYISATELRHVMIN-LGEKLTD-DEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 ~~~~~~~f~~~D~-~~~g~i~~~ef~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
...+..+|+.||+ +++|+|+.+||+.++.. +|..++. +++..+++.+|.|++|.|+|+||+..+..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3568999999999 99999999999999998 8877888 899999999999999999999999988653
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2e-13 Score=90.10 Aligned_cols=139 Identities=22% Similarity=0.373 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcc------cCC-
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMK------ETD- 81 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~------~~~- 81 (150)
...++..++.++|.+++|.|+..++..++..........+..+-+..++.+.+|.|+|+++...+..... ...
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4457899999999999999999999999876555555667778888899999999999999988764211 000
Q ss_pred hH------HHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 82 AE------EELKEAFKVFDKDQNGYISATELRHVMINLG-EKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 82 ~~------~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.. ..-..-|+..|.|++|.++++||..++.... +++.+-.+...+...|.|+||.|+++||+.-+-
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 00 1235569999999999999999999998653 556667788899999999999999999997654
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-12 Score=81.38 Aligned_cols=121 Identities=21% Similarity=0.370 Sum_probs=101.8
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC-CCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHH
Q 031903 26 GCITVEELATVIRSLDQNPTEEELQDMINEVDSDR-NGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISAT 104 (150)
Q Consensus 26 g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 104 (150)
..++...+..+.+. ...+..+++.+++.+-... +|.++.++|..++...-+..........+|+.+|.+++|.|+..
T Consensus 7 ~~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred ccCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 34555556665544 4688999999999987654 89999999999998887767777888999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 105 ELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 105 ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
||...+........++-+.-.|+.||.|++|.|+++|++.++..
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 99999988766666677777899999999999999999998865
No 21
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.51 E-value=5.9e-13 Score=91.31 Aligned_cols=135 Identities=21% Similarity=0.411 Sum_probs=103.9
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC---------
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSL-DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET--------- 80 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~--------- 80 (150)
..+...|.++|+.+.|+|+..++..++... |+.++-..+. -+....+.+|.|.|......+..-....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~--~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR--PKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh--hhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 357889999999999999999999998763 4555533332 2333456678898887766554321110
Q ss_pred --ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 81 --DAEEELKEAFKVFDKDQNGYISATELRHVMINL----GEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 81 --~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.....+..+|+.+|.|++|.|+.+||+.+.+-+ ..++++.++..+.+.+|.|+||.|+++||+..+.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 112357788999999999999999999987644 5678899999999999999999999999999875
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.47 E-value=3.7e-12 Score=77.68 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=84.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL-GEKLTDDEVEQM 125 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~ 125 (150)
..+...|..+|.+++|.|++.+|..++..... ....+.+..+|..+|.+++|.|+.++|..++... ........+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 34567888899999999999999998865433 2345689999999999999999999999998754 233455678899
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhc
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
|..+|.+++|.|+.++|..++..+
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 999999999999999999888654
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=7.9e-13 Score=69.81 Aligned_cols=62 Identities=47% Similarity=0.826 Sum_probs=49.8
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHH----HHHHHHhhcCCCCCceeHHHHHHHH
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEE----LQDMINEVDSDRNGTIEFGEFLNLM 73 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~~~v~~~ef~~~~ 73 (150)
+++.+|..+|.+++|+|+..++..++..++...+... +..++..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4778999999999999999999999999886555433 4455788888888888888887764
No 24
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=73.03 Aligned_cols=142 Identities=25% Similarity=0.462 Sum_probs=106.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCC-----------CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDG-----------DGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNL 72 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~-----------~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~ 72 (150)
-++..++-++.+.|..+.++- .-.++.+.+.++- .+. ..+.-+++...+..++.|.+++++|+.+
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELk---enpfk~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELK---ENPFKRRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhh---cChHHHHHHHHhccCCCCcccHHHHHHH
Confidence 356677778888887776542 1223333333321 111 1233456777888899999999999999
Q ss_pred HHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHH----HHHHhcCCCCCcceeHHHHHHHHH
Q 031903 73 MAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLG-EKLTDDEVE----QMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 73 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~----~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
+.........+-....+|+.||-++++.|...++...+..+. ..++++++. .++...|.+++|.+++.+|...+.
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 987776666667888999999999999999999999998763 568887764 456778999999999999999876
Q ss_pred hc
Q 031903 148 TI 149 (150)
Q Consensus 148 ~~ 149 (150)
.+
T Consensus 177 ra 178 (189)
T KOG0038|consen 177 RA 178 (189)
T ss_pred hC
Confidence 54
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=8.2e-13 Score=73.30 Aligned_cols=65 Identities=23% Similarity=0.525 Sum_probs=60.0
Q ss_pred HHHHHHhhhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFD-KDQNG-YISATELRHVMIN-----LGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..+..+|+.+| .+++| .|+.++++.+++. .|...+++++..+++.+|.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46899999998 79999 5999999999998 788889999999999999999999999999998764
No 26
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=1.5e-12 Score=81.66 Aligned_cols=125 Identities=19% Similarity=0.383 Sum_probs=95.9
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHh
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAF 90 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f 90 (150)
+.++.+...+|.+++|.|+++||..+-+.+ ..++.+|+.+|++++|.|+..|+..++...-. .-..+....++
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~Lspq~~~~lv 166 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGY-RLSPQFYNLLV 166 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCc-CCCHHHHHHHH
Confidence 445566777788888889988888876554 36788888888888899998888888865432 33556778888
Q ss_pred hhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCc--ceeHHHHHHHHHh
Q 031903 91 KVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDG--QVNYDEFVKMMMT 148 (150)
Q Consensus 91 ~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g--~i~~~eF~~~l~~ 148 (150)
+.||..+.|.|.+++|.+++..+ ..+...|+..|++..| .|+|++|+...+.
T Consensus 167 ~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~~ 220 (221)
T KOG0037|consen 167 RKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMTMS 220 (221)
T ss_pred HHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHhhc
Confidence 88888878889999888888777 3567788888888777 4788888877653
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1.9e-12 Score=71.79 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhhcC-CCCcceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 8 EQIVEFKEAFCLFDK-DGDGCITVEELATVIRS-LDQNPTE-EELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~-~~~g~l~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.-+..+..+|..+|+ +++|+|+..+|+.++.. ++..++. .++..++..+|.+++|.|+|+||+.++....
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 456789999999999 99999999999999998 8866777 8999999999999999999999999987653
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.39 E-value=9.3e-12 Score=70.52 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.++++++..+..+|..+|.+++|.|+..++..+++..+ ++.+++..++..++.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999998865 678899999999999999999999999988754
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.38 E-value=3.6e-12 Score=70.72 Aligned_cols=66 Identities=24% Similarity=0.525 Sum_probs=59.1
Q ss_pred HHHHHHhhhhCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKVFDK-DQ-NGYISATELRHVMIN---LGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~ef~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+..+|..||. ++ +|+|+.+||+.++.. .|.+++++++..+++.+|.|++|.|+|+||+.++..+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467889999987 67 899999999999973 5888999999999999999999999999999988653
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=2.5e-12 Score=72.57 Aligned_cols=66 Identities=27% Similarity=0.513 Sum_probs=58.4
Q ss_pred HHHHHHhhhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKVFDK-DQ-NGYISATELRHVMIN-----LGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~ef~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+..+|..+|. ++ +|.|+.+|++.++.. +|...+++++..++..+|.+++|.|+|++|++++..+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 468899999997 87 699999999999986 4567788999999999999999999999999988764
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.36 E-value=4.9e-12 Score=64.02 Aligned_cols=52 Identities=40% Similarity=0.793 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 97 QNGYISATELRHVMINLGEK-LTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.+|.|+.++|+.++...|.+ ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999888988 99999999999999999999999999999864
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.9e-11 Score=71.80 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMI-NLGEKLTDDEVEQM 125 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~-~~~~~~~~~~~~~~ 125 (150)
++++..|..++.+++|.|+++++...++.+--. ...+.+..+...+|+++.|+|+.++|+..+. ..+..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE-~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE-PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 568889999999999999999997777655433 3567889999999999999999999999966 45666689999999
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
|+.+|-+++|.||+.+|..+...+|
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhC
Confidence 9999999999999999999988776
No 33
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-11 Score=76.65 Aligned_cols=100 Identities=24% Similarity=0.369 Sum_probs=84.9
Q ss_pred HHHhhhhcCCCCcc-eeHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCC------hHHH
Q 031903 14 KEAFCLFDKDGDGC-ITVEELATVIRSLDQNPTEE-ELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETD------AEEE 85 (150)
Q Consensus 14 ~~~F~~~d~~~~g~-l~~~~~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~------~~~~ 85 (150)
.+++..++.+++|. |++++|.+.+..+....+.. .++-+|+.+|.+++|.|+.+++..++........ ....
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 67888999998888 99999999999887555554 8999999999999999999999999987765322 2345
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
+..+|..+|.+++|+|+.+||..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6788999999999999999999998754
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=1.9e-11 Score=67.86 Aligned_cols=69 Identities=25% Similarity=0.526 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhhc-CCCCc-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFD-KDGDG-CITVEELATVIRS-----LDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 8 ~~~~~~~~~F~~~d-~~~~g-~l~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.-+..+..+|..+| ++++| .|+..++..+++. ++...+++++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999998 79999 6999999999998 7888899999999999999999999999999888655
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=8.2e-12 Score=70.18 Aligned_cols=67 Identities=28% Similarity=0.566 Sum_probs=58.3
Q ss_pred HHHHHHHhhhhC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 EEELKEAFKVFD-KDQNG-YISATELRHVMIN-LG----EKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 ~~~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
.+.+..+|+.+| .+++| .|+.+|++.+++. .| ...+++++..++..+|.+++|.|+|.+|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 357899999997 99999 5999999999985 44 34578899999999999999999999999988754
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=7.5e-12 Score=70.34 Aligned_cols=66 Identities=21% Similarity=0.444 Sum_probs=56.4
Q ss_pred HHHHHHhhhhC-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKVFD-KDQNG-YISATELRHVMINL-----GEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+..+|..|| .+++| +|+..||+.++... +...++.++..++..+|.|++|.|+|+||+.++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 46788899998 78998 59999999999763 334577899999999999999999999999988653
No 37
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.31 E-value=1.3e-11 Score=65.21 Aligned_cols=60 Identities=32% Similarity=0.493 Sum_probs=54.4
Q ss_pred HHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 87 KEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
+.+|..+|.+++|.|+.+|+..++...| .+.+++..++..+|.+++|.|++++|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999999876 47889999999999999999999999988753
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.30 E-value=6.1e-11 Score=65.82 Aligned_cols=70 Identities=14% Similarity=0.445 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhcC-CC-CcceeHHHHHHHHHH---cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 7 NEQIVEFKEAFCLFDK-DG-DGCITVEELATVIRS---LDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 7 ~~~~~~~~~~F~~~d~-~~-~g~l~~~~~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
++-+..+..+|.+||. ++ +|+|+..+|..++.. +|...+.+++..+++.+|.+++|.|+|.+|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456788999999998 56 899999999999963 6888899999999999999999999999999988755
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.30 E-value=3.4e-11 Score=62.36 Aligned_cols=61 Identities=49% Similarity=0.969 Sum_probs=57.1
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
+..+|..+|.+++|.|+.+++..++...+.+.+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999875
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3.1e-11 Score=68.39 Aligned_cols=65 Identities=26% Similarity=0.554 Sum_probs=58.5
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
....+..+|..+|.+++|.|+.+++..+++..+ ++++++..++..+|.+++|.|++++|+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 345789999999999999999999999998865 78889999999999999999999999988764
No 41
>PLN02964 phosphatidylserine decarboxylase
Probab=99.28 E-value=9.7e-11 Score=85.47 Aligned_cols=119 Identities=18% Similarity=0.333 Sum_probs=89.5
Q ss_pred cceeHHHHHHHHHH--cC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc-ccCChHH--HHHHHhhhhCCCCCC
Q 031903 26 GCITVEELATVIRS--LD-QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM-KETDAEE--ELKEAFKVFDKDQNG 99 (150)
Q Consensus 26 g~l~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g 99 (150)
..++.+++...... .. .....+++.+.|..+|.+++|.+ +..++.... ..+...+ .+..+|+.+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 44666666654322 11 11223557788899999999986 333444333 1222222 389999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||.+++..
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999998887788999999999999999999999999998875
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.27 E-value=3.5e-11 Score=67.08 Aligned_cols=66 Identities=20% Similarity=0.465 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 83 EEELKEAFKVFDK--DQNGYISATELRHVMIN-LGEK----LTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 83 ~~~~~~~f~~~D~--~~~g~i~~~ef~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
...+..+|..+|. +++|.|+.+++..++.. .|.. .+..++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4568899999999 89999999999999976 4533 35889999999999999999999999998865
No 43
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.27 E-value=5.5e-11 Score=66.10 Aligned_cols=66 Identities=26% Similarity=0.456 Sum_probs=56.6
Q ss_pred HHHHHHhhh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKV-FDKDQNG-YISATELRHVMINL-----GEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~-~D~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+..+|+. +|.+++| .|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||++++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467888998 6788876 99999999999876 335667899999999999999999999999988754
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.26 E-value=6.7e-11 Score=65.95 Aligned_cols=70 Identities=20% Similarity=0.468 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhhcC--CCCcceeHHHHHHHHHH-cCCC----CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 7 NEQIVEFKEAFCLFDK--DGDGCITVEELATVIRS-LDQN----PTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 7 ~~~~~~~~~~F~~~d~--~~~g~l~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
++++..+..+|..+|+ +++|.|+..++..+++. ++.. .+.+++..++..++.+++|.|++++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999 89999999999999976 4533 358999999999999999999999999988755
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=1.6e-10 Score=64.95 Aligned_cols=70 Identities=21% Similarity=0.444 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhhc-CCCCc-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 8 EQIVEFKEAFCLFD-KDGDG-CITVEELATVIRS-L----DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 8 ~~~~~~~~~F~~~d-~~~~g-~l~~~~~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.-+..+..+|..|| ++++| .|+..+|..++.. + ....+..++..++..+|.+++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34667889999999 78998 5999999999966 2 3345778999999999999999999999999997664
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.24 E-value=1.2e-10 Score=58.94 Aligned_cols=52 Identities=37% Similarity=0.631 Sum_probs=47.9
Q ss_pred CCcceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 24 GDGCITVEELATVIRSLDQN-PTEEELQDMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
++|.|+.++|..++..+|.. ++++++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998853
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=1.9e-10 Score=64.65 Aligned_cols=68 Identities=22% Similarity=0.498 Sum_probs=59.1
Q ss_pred HHHHHHHhhhhc-CCCCc-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 10 IVEFKEAFCLFD-KDGDG-CITVEELATVIRS-LD----QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 10 ~~~~~~~F~~~d-~~~~g-~l~~~~~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
+..++++|..+| .+++| .|+..++..+++. ++ ..++.+++..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999975 44 346889999999999999999999999999887653
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.9e-10 Score=79.02 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=100.6
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCH--H-HHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHH
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTE--E-ELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKE 88 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (150)
-+.--|..+|+..+|.|+..+|..++-......++ . .++++-..+... ...|+++||..+..... ....+..
T Consensus 319 il~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~----~l~dfd~ 393 (489)
T KOG2643|consen 319 ILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLN----NLNDFDI 393 (489)
T ss_pred HHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHh----hhhHHHH
Confidence 34567899999999999999999987665422222 2 345555566554 45699999999987664 3345666
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 89 AFKVFDKDQNGYISATELRHVMIN-LGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
+...| ....+.|+..+|+++... +|..+++..++-+|..||.|+||.+|++||+.++.+
T Consensus 394 Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 394 ALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 66666 344578999999999875 588999888899999999999999999999999875
No 49
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.22 E-value=5.5e-10 Score=86.35 Aligned_cols=136 Identities=26% Similarity=0.526 Sum_probs=110.4
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCC-------CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNP-------TEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
..|++.+..+.-+|..||++.+|.++..+|..+|+.+|+++ +++++..++..+|++.+|+|+..+|+++|...
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999766 34579999999999999999999999999876
Q ss_pred cccC-ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc----CCC----CCcceeHHHHHHHHH
Q 031903 77 MKET-DAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEA----DLD----GDGQVNYDEFVKMMM 147 (150)
Q Consensus 77 ~~~~-~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~----d~~----~~g~i~~~eF~~~l~ 147 (150)
-... .....+..+|+.+|. +..+|+..+..+. ++++++..++..+ ++. -.+.++|.+|++.+.
T Consensus 2326 ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred ccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 5432 233589999999998 7889998887643 4566666666654 332 235699999988763
No 50
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=2e-10 Score=64.81 Aligned_cols=68 Identities=21% Similarity=0.482 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhhcC-CC-CcceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 9 QIVEFKEAFCLFDK-DG-DGCITVEELATVIRS-----LDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 9 ~~~~~~~~F~~~d~-~~-~g~l~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
-...+..+|..+|. ++ +|.|+..++..++.. ++...+.+++..++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999997 86 699999999999876 4667889999999999999999999999999888644
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=1.4e-10 Score=61.30 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=54.7
Q ss_pred HHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 14 KEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 14 ~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
+++|..+|++++|.|+..++..++...+. +.+++..++..++.+++|.|++++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999988764 88889999999999999999999999888644
No 52
>PF14658 EF-hand_9: EF-hand domain
Probab=99.19 E-value=1.9e-10 Score=59.24 Aligned_cols=61 Identities=30% Similarity=0.590 Sum_probs=56.9
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCC-cceeHHHHHHHHHh
Q 031903 88 EAFKVFDKDQNGYISATELRHVMINLGE-KLTDDEVEQMINEADLDGD-GQVNYDEFVKMMMT 148 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 148 (150)
.+|..+|+++.|.|...++..+|++++. ..++++++.+...+|+++. |.|+++.|+.++..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999987 8899999999999999998 99999999999875
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.17 E-value=2.3e-10 Score=66.47 Aligned_cols=62 Identities=21% Similarity=0.404 Sum_probs=53.5
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
....+...|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|++|.||++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 44578899999999999999999999876 224457788999999999999999999999884
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.17 E-value=4.1e-10 Score=58.22 Aligned_cols=61 Identities=54% Similarity=0.943 Sum_probs=55.6
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLM 73 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~ 73 (150)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999888999999999999999999999999998764
No 55
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.16 E-value=1e-09 Score=76.03 Aligned_cols=137 Identities=20% Similarity=0.370 Sum_probs=107.9
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHccc
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMAKKMKE 79 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~~~~~~ 79 (150)
-+|.+....+...|..+|.+++|.|+.+++...-. ..++.-.+.++|... -...+|+++|++|+.++.... .
T Consensus 271 ~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~ 346 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-D 346 (493)
T ss_pred heeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-c
Confidence 35666667777789999999999999999988643 345677788899833 334578999999999997654 3
Q ss_pred CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-------C-CCCC-HHHHHHHHHhcCCCCCcceeHHHHHH
Q 031903 80 TDAEEELKEAFKVFDKDQNGYISATELRHVMINL-------G-EKLT-DDEVEQMINEADLDGDGQVNYDEFVK 144 (150)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~ 144 (150)
......+...|+.+|.+++|.++..|++.++... + ..++ +..+.+++..+-+...++|++.+|..
T Consensus 347 k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 4456789999999999999999999999887644 2 2222 45567888888888899999999986
No 56
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.1e-09 Score=74.82 Aligned_cols=100 Identities=19% Similarity=0.399 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 46 EEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 46 ~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
+..+..+|..+|.+++|.|+..+....+..+..+....+..+.+|+..|.+.+|.++.+||++.+.. .+.++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 3457789999999999999999999888877666566788999999999999999999999999974 35678899
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
|...|.+.||.|+.+|..+.+..+|
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhC
Confidence 9999999999999999999998875
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.12 E-value=1.6e-09 Score=60.25 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhh-hcCCCCc-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 7 NEQIVEFKEAFCL-FDKDGDG-CITVEELATVIRSL-----DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 7 ~~~~~~~~~~F~~-~d~~~~g-~l~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
+.-+..+..+|.. +|++++| .|+..||..++... +...+..++..++..+|.+++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3457789999999 6777865 99999999999764 234567889999999999999999999999988755
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.09 E-value=6.8e-10 Score=61.74 Aligned_cols=66 Identities=17% Similarity=0.474 Sum_probs=55.9
Q ss_pred HHHHHHhhhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKVFDKD--QNGYISATELRHVMI-NLGEKLT----DDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~~D~~--~~g~i~~~ef~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+...|..|+.. ++|.|+.+||+.++. ..+..++ +.++..++..+|.+++|.|+|++|+..+..+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999765 478999999999997 4555565 8999999999999999999999999988653
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=99.07 E-value=2e-09 Score=55.52 Aligned_cols=62 Identities=39% Similarity=0.688 Sum_probs=57.1
Q ss_pred HHhhhhcCCCCcceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCC-CceeHHHHHHHHHHH
Q 031903 15 EAFCLFDKDGDGCITVEELATVIRSLDQ-NPTEEELQDMINEVDSDRN-GTIEFGEFLNLMAKK 76 (150)
Q Consensus 15 ~~F~~~d~~~~g~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~v~~~ef~~~~~~~ 76 (150)
..|..+|+++.|.|...++..+|++.+. .+.+.+++.+.+.+|+++. |.|+++.|+.+|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3689999999999999999999999997 8999999999999999888 999999999998754
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.8e-09 Score=61.96 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 031903 44 PTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 111 (150)
.....+.-.|..+|.+++|.|+..|+..+. . ......+...|..+|.+++|.||.+||..++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 444566677777777777788877777665 1 12345567777778888888888888887773
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.98 E-value=6e-09 Score=57.94 Aligned_cols=69 Identities=17% Similarity=0.390 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhhcCC--CCcceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFDKD--GDGCITVEELATVIR-SLDQNPT----EEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~--~~g~l~~~~~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.-+..+..+|..++.. ++|.|+..++..++. .++..++ .+++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4467789999999876 479999999999996 4554455 8999999999999999999999999988755
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.91 E-value=9.8e-09 Score=66.02 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCC---
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVIRSLD---QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETD--- 81 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~--- 81 (150)
.-.+.+..+|.+.|.|.+|+|+..++++++..-. +..+..+.+.-|+..|.+++|.|+|++|.--+........
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 3456789999999999999999999999875321 2233344556788889999999999999755432110000
Q ss_pred --------------------------------------------------------hHHHHHHHhhhhCCCCCCcccHHH
Q 031903 82 --------------------------------------------------------AEEELKEAFKVFDKDQNGYISATE 105 (150)
Q Consensus 82 --------------------------------------------------------~~~~~~~~f~~~D~~~~g~i~~~e 105 (150)
...-+..+...+|++++..++..+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 001144556667888888888888
Q ss_pred HHHHHH-----HhCCCCCHHH----HHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 106 LRHVMI-----NLGEKLTDDE----VEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 106 f~~~l~-----~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
|....- ..|..+.+.. ...+-..+|.|.+|.++++|...++
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 876532 2244454433 3455556677888888887776653
No 63
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.90 E-value=1.4e-08 Score=57.91 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.++++|...+..+|..+++ .+|.|+..+...++... .++.+.+..||...|.+++|.++++||+-++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4889999999999999986 68999999999988775 5778999999999999999999999999988643
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.5e-08 Score=68.19 Aligned_cols=129 Identities=25% Similarity=0.396 Sum_probs=93.5
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHHHHc------CC--------CCC-HHHHH--HHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVIRSL------DQ--------NPT-EEELQ--DMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l~~~------~~--------~~~-~~~~~--~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
++..|..+|.|++|.|+.+||..+.+.. +. ..+ ...+. .+...+..++++++++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4567999999999999999999876322 11 000 11111 2334468899999999999999987
Q ss_pred HcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 76 KMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLG-EKLTD--DEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 76 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~~~~~--~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
+ ..+.+.--|..+|+..+|.|+..+|-.++..+. .+... ..+..+-+.+..+ +..||++||.++..
T Consensus 315 L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 315 L-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 7 445677789999999999999999999987764 22221 2356667777655 56799999988764
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=63.66 Aligned_cols=77 Identities=31% Similarity=0.572 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q 031903 66 FGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKM 145 (150)
Q Consensus 66 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 145 (150)
|.+|..+-+. ....+..+|+.||.+.||+|++.|++.++..+|.+-+.--+..+++..|.|.+|+||+-+|+-+
T Consensus 87 yteF~eFsrk------qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 87 YTEFSEFSRK------QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhHHHHH------HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 5566644432 3357889999999999999999999999999998888778899999999999999999999988
Q ss_pred HHh
Q 031903 146 MMT 148 (150)
Q Consensus 146 l~~ 148 (150)
+..
T Consensus 161 frk 163 (244)
T KOG0041|consen 161 FRK 163 (244)
T ss_pred HHH
Confidence 764
No 66
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.89 E-value=7.1e-08 Score=56.72 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=88.2
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCC--CCCcccHHHHHHHHHHhC---CCCCH
Q 031903 45 TEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKD--QNGYISATELRHVMINLG---EKLTD 119 (150)
Q Consensus 45 ~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~ef~~~l~~~~---~~~~~ 119 (150)
..++++.+|..+|..++|+|++.+.-.+++..-..+ ....+.+....++++ +-..|++++|.-++...+ ...+-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 347889999999999999999999999998775544 556777777777666 456899999999988764 45677
Q ss_pred HHHHHHHHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 120 DEVEQMINEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 120 ~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
+++-.-++.||++++|.|...|+..+|..+|
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLG 118 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHH
Confidence 8888999999999999999999999998876
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.87 E-value=7.3e-08 Score=60.13 Aligned_cols=110 Identities=27% Similarity=0.407 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC-Ch
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET-DA 82 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~-~~ 82 (150)
.++..++..+..+|..||.+.||+|+..+++.++..+|-+-+---++.+....|.+.+|+++|.+|+-+++...... ..
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 46788999999999999999999999999999999999777777788899999999999999999999988654321 22
Q ss_pred HHHHHHHh--hhhCCCCCCcccHHHHHHHHHHh
Q 031903 83 EEELKEAF--KVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 83 ~~~~~~~f--~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
...+..+= ...|....|+.....|-++=-..
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~ 204 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEA 204 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHHHHHHh
Confidence 23333333 34788888888888887764443
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.83 E-value=6e-08 Score=68.16 Aligned_cols=141 Identities=18% Similarity=0.304 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHhh---hhcCCCCcceeHHHHHHHH-HHcCCCCCHHHHHHHHHh-hcCCCCCceeHHHHHHHHHHHccc
Q 031903 5 LTNEQIVEFKEAFC---LFDKDGDGCITVEELATVI-RSLDQNPTEEELQDMINE-VDSDRNGTIEFGEFLNLMAKKMKE 79 (150)
Q Consensus 5 l~~~~~~~~~~~F~---~~d~~~~g~l~~~~~~~~l-~~~~~~~~~~~~~~~~~~-~d~~~~~~v~~~ef~~~~~~~~~~ 79 (150)
+...+.++++.+|. ..+.++.-+++.++|.+.. ..++.....+++.++... .|...+|.|+|.||..+-..++.
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~- 105 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA- 105 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC-
Confidence 33444455555554 4577888999999998853 334444445555555544 46778999999999988765554
Q ss_pred CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 80 TDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLT---DDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~---~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.+.....+|+.||+.++|.++.+++.+++.....+.. ..+-..+-..+..+....++|.+|.+++..
T Consensus 106 --pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 106 --PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred --chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHH
Confidence 3457889999999999999999999999987753211 011111222333333445666666666543
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.80 E-value=1.3e-08 Score=44.28 Aligned_cols=27 Identities=37% Similarity=0.788 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 122 VEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
+..+|+.+|.|++|.|+++||...+.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 344555555555555555555555443
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.75 E-value=1.6e-07 Score=51.95 Aligned_cols=65 Identities=18% Similarity=0.427 Sum_probs=50.5
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINL-----GEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
..+..+|..|. .+.+.++..||+.++... ...-.+..++.+++..|.|+||.|+|.||+..+..+
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677788886 445689999999988643 233457788999999999999999999999887643
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.73 E-value=2.4e-08 Score=43.46 Aligned_cols=27 Identities=48% Similarity=0.762 Sum_probs=19.9
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
++.+|+.+|.|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777777654
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.72 E-value=2.2e-07 Score=53.04 Aligned_cols=64 Identities=31% Similarity=0.606 Sum_probs=56.1
Q ss_pred ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 81 DAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.....+..+|...++ ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|.++.+||+-.+.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 456788999999985 689999999999998876 8889999999999999999999999998765
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.71 E-value=7.4e-07 Score=65.66 Aligned_cols=138 Identities=20% Similarity=0.354 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHH
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEE 85 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~ 85 (150)
......++..+|...|++++|.++..+...++..+...++...+..+|+..+..+.+++..++|..+.......+ .
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----e 206 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP----E 206 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----h
Confidence 445567889999999999999999999999999999899999999999999888999999999999987665433 6
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCC----CcceeHHHHHHHHHh
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLG--EKLTDDEVEQMINEADLDG----DGQVNYDEFVKMMMT 148 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~ 148 (150)
+..+|..+- ++.++++.+++..++...+ .+.+.+.+..+++.+.... .+.++++.|.++|.+
T Consensus 207 v~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 207 VYFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 778888874 4489999999999999774 4677788888888885443 456999999999864
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.67 E-value=2.7e-07 Score=54.79 Aligned_cols=100 Identities=16% Similarity=0.310 Sum_probs=78.2
Q ss_pred HHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHH----HHHH
Q 031903 14 KEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEE----ELKE 88 (150)
Q Consensus 14 ~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~----~~~~ 88 (150)
+++...+..++.|.+++++|..++..+. ..+..-.+...|+.+|-++++.|...+....+..+....-..+ ...+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 4566777889999999999999887665 3344445667888899999999999999988877755443333 3456
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 89 AFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
+....|.+|+|++++.+|..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6777899999999999999988754
No 75
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.66 E-value=1.8e-06 Score=51.86 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMIN-LGEKLTDDEVEQM 125 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~ 125 (150)
+++++.|..+|.|++|.|+.++....+..+-.. ...+.+...+.. ..|.|++--|..++-. +...-+++.+...
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 456778888899999999999888888766554 466677777644 4678988888887753 3333346678899
Q ss_pred HHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 126 INEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 126 ~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
|+.||.++.|.|.-+.+...|.+.|
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=1.1e-06 Score=48.57 Aligned_cols=68 Identities=15% Similarity=0.391 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVIRS-L----DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.-+..+..+|..|. .+.+.|+..||..++.. + ........+..++..+|.+++|.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44667889999998 45679999999999853 2 334567788999999999999999999999998755
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.61 E-value=4.8e-07 Score=44.14 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=40.8
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 27 CITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 27 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.++.++++.+|+.++..+++..+..+|..+|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999988654
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.60 E-value=2.8e-07 Score=44.95 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
+++..|++.+|+.+++.+++..+..+|+..|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999988754
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.55 E-value=2.1e-07 Score=41.23 Aligned_cols=30 Identities=57% Similarity=0.966 Sum_probs=24.9
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHHHH-HcC
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATVIR-SLD 41 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~l~-~~~ 41 (150)
+++.+|..+|++++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999988 554
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.9e-06 Score=61.73 Aligned_cols=138 Identities=23% Similarity=0.400 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcc------
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMK------ 78 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~------ 78 (150)
++.+|...-...|..+.+ ..|+|+-.+-..++-.. .++..-+..||..-|.+.+|+++..||.-+|.....
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS--~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQS--GLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhc--CCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 567777777778888855 67999999998887554 466777888999999999999999999988764200
Q ss_pred --------------------------------------------------------------------------------
Q 031903 79 -------------------------------------------------------------------------------- 78 (150)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (150)
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -----------------------cCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCc
Q 031903 79 -----------------------ETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDG 135 (150)
Q Consensus 79 -----------------------~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 135 (150)
.....-.+..+|+..|+...|+++-..-+.+|-..+ ++...+..+|..-|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 000012467889999999999999999999987665 7788999999999999999
Q ss_pred ceeHHHHHHHHH
Q 031903 136 QVNYDEFVKMMM 147 (150)
Q Consensus 136 ~i~~~eF~~~l~ 147 (150)
.++-+||+-.+.
T Consensus 245 kL~~dEfilam~ 256 (1118)
T KOG1029|consen 245 KLSADEFILAMH 256 (1118)
T ss_pred cccHHHHHHHHH
Confidence 999999986553
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.51 E-value=2e-07 Score=41.27 Aligned_cols=26 Identities=54% Similarity=0.949 Sum_probs=15.0
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~ 111 (150)
++.+|+.+|.+++|+|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45556666666666666666666655
No 82
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.49 E-value=1.3e-06 Score=61.16 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=98.8
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHH--HHHcC------------CCCCHHHHHHH---HHhhcCCCCCceeHHHHHHHHH
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATV--IRSLD------------QNPTEEELQDM---INEVDSDRNGTIEFGEFLNLMA 74 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~--l~~~~------------~~~~~~~~~~~---~~~~d~~~~~~v~~~ef~~~~~ 74 (150)
.+.++|..+++.++|.|+..++... +..+. ...+-+....+ |..+|.+.+|.++-++...+..
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4688999999999999999988763 22221 11233444444 6667888899999988777764
Q ss_pred HHcccCChHHHHHHHhh----hhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 75 KKMKETDAEEELKEAFK----VFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 75 ~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
..+ ...-+.++|. ..-...+|.++.++|..++.+.-.+-++.-+..+|+.+|.+++|.|+..|.--++
T Consensus 306 ~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 306 HTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred cch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 443 2335678887 3335678999999999999988777788889999999999999999988876554
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.46 E-value=1.4e-06 Score=60.93 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=47.3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
...+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||.+.+..+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678899999999999999999942 4678999999999999999999987653
No 84
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.40 E-value=1.1e-06 Score=58.96 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMI 126 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 126 (150)
+.+..+|..||.+.+|.++|.+.+..+..++..+.....++.+|+.|+.+.||.++..+|..+++... ++..-.+.-+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 45667899999999999999999988888877777888999999999999999999999988887542 24444566789
Q ss_pred HhcCCCCCcceeHHHHHHHHHh
Q 031903 127 NEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 127 ~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
...+...+|+|++++|.++...
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHh
Confidence 9999999999999999988653
No 85
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.32 E-value=5.5e-06 Score=58.95 Aligned_cols=75 Identities=32% Similarity=0.535 Sum_probs=66.2
Q ss_pred CccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 2 SEVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQ---NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 2 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.++++++|+..+...|...| +++|+++..++..++...+. ....++++.+....+.+.+|.|+|++|+..+....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 35799999999999999999 99999999999999987664 34578899999999999999999999999776553
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.30 E-value=1.1e-06 Score=36.79 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=10.0
Q ss_pred HHhhhhCCCCCCcccHHHHHH
Q 031903 88 EAFKVFDKDQNGYISATELRH 108 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~ 108 (150)
.+|+.+|.|++|.|+.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344444444444444444444
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.29 E-value=4.3e-06 Score=58.44 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH---cccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 43 NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK---MKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 43 ~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
......+..+|+.+|.+++|.|+.+||..++..+ +...-....+-.+-+.+|-+++|.|+.+||.++++-.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4555667778888888888888888887776533 3444556677777778888888888888888877643
No 88
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.27 E-value=7.5e-06 Score=58.01 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=70.8
Q ss_pred hcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC-------------------
Q 031903 20 FDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET------------------- 80 (150)
Q Consensus 20 ~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~------------------- 80 (150)
.|..+||.|+++||..+-.-+. .++.....+|..+|+.++|.++++++..++.......
T Consensus 83 aD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 3445566666666655322221 1233444556666666666666666665554321100
Q ss_pred ---------------ChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCc-ceeHHHHH
Q 031903 81 ---------------DAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDG-QVNYDEFV 143 (150)
Q Consensus 81 ---------------~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~ 143 (150)
-..+...++|+..|+.++|.|+.=+|+.++-..-.++....++..+-......++ .+|+..|.
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 0123356778888999999999999998887776666666676666665544443 45555543
No 89
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.26 E-value=3.6e-06 Score=66.37 Aligned_cols=65 Identities=28% Similarity=0.587 Sum_probs=58.5
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLT-------DDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..+..+|+.||.+.+|.++..+|+.||+..|+.++ +..+..++...|++.+|+|+.++|+.++.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 45778899999999999999999999999997663 247999999999999999999999999875
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.25 E-value=2.5e-06 Score=35.67 Aligned_cols=24 Identities=50% Similarity=0.848 Sum_probs=17.5
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATV 36 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~ 36 (150)
+++.|..+|.|++|.|+..||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356777777777787777777764
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=56.33 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 41 DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 41 ~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
|.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4566778889999999999999999999952 4678999999999999999999998754
No 92
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.18 E-value=2.3e-05 Score=56.75 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=95.0
Q ss_pred CccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHH-HHHcCCCCCHHHHHHHHHhhcCC-----CCCceeHHHHHHHHHH
Q 031903 2 SEVLTNEQIVEFKEAFCLFDKDGDGCITVEELATV-IRSLDQNPTEEELQDMINEVDSD-----RNGTIEFGEFLNLMAK 75 (150)
Q Consensus 2 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~-l~~~~~~~~~~~~~~~~~~~d~~-----~~~~v~~~ef~~~~~~ 75 (150)
++.|.+.-+..+.++|...|.+++|.++-.++..+ ..+++.++...++..+-...... .++.++...|+-....
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 57889999999999999999999999999998886 45688888887776666554322 1345666666644432
Q ss_pred Hccc-----------------------------------------CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 76 KMKE-----------------------------------------TDAEEELKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 76 ~~~~-----------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
.... ....+-+..+|..+|.++||.++..|+..++..++
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 2100 00113467889999999999999999999998875
Q ss_pred CCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q 031903 115 EKLTDDEVEQMINEADLDGDGQVNYDEFVK 144 (150)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 144 (150)
....-.. ..-..--.+..|.++|+-|+.
T Consensus 346 ~~pW~~~--~~~~~t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 346 GSPWTSS--PYKDSTVKNERGWLTLNGFLS 373 (625)
T ss_pred CCCCCCC--cccccceecccceeehhhHHH
Confidence 3320000 000111123567888887765
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.13 E-value=1.1e-06 Score=51.11 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=46.5
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKM 145 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 145 (150)
....+.-.|..+|.+++|.++..|+..+...+ ...+..+..++...|.|+||.||..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 45678888999999999999999999886644 344557899999999999999999999753
No 94
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.92 E-value=6.4e-05 Score=48.89 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHHccc--CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 031903 46 EEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKE--TDAEEELKEAFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 46 ~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
...+..+|...|.+.++.|+..+..++++..+.. ....+.-+..|+..|++++|.|+++|+.--+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4557789999999999999999999998766432 112234566799999999999999999865543
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.92 E-value=4.9e-05 Score=41.73 Aligned_cols=62 Identities=24% Similarity=0.596 Sum_probs=49.1
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhcCCC----CCcceeHHHHHHHHHh
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLG-E-KLTDDEVEQMINEADLD----GDGQVNYDEFVKMMMT 148 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 148 (150)
+..+|..+-. +.+.|+.++|.++|.... . .++.+++..++..+..+ ..+.++++.|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6778888844 788999999999997654 3 46788888998888654 3689999999999864
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.87 E-value=8.8e-05 Score=50.12 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHH
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEA 89 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (150)
..+...|..+|.+.+|.++..+-...+.-+. ...+...++..|+.++...+|.+.-.+|..++...+.-. .-.+...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeecccc
Confidence 5678899999999999999998888776654 677888999999999999999999988888877654322 2356788
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 90 FKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 90 f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
|..++...+|+|+.++|+.+....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999987553
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.84 E-value=0.00041 Score=42.88 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=83.4
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcC---CCCCceeHHHHHHHHHH---H------
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDS---DRNGTIEFGEFLNLMAK---K------ 76 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~v~~~ef~~~~~~---~------ 76 (150)
....++++..-+|+|+||.|.+.|-.+.++.+|...--.-+..++-.... ...+-+.-.-|--.+.. -
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 34568899999999999999999999999999977655444333322211 11121111111100000 0
Q ss_pred ----cccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-------CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q 031903 77 ----MKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL-------GEKLTDDEVEQMINEADLDGDGQVNYDEFVKM 145 (150)
Q Consensus 77 ----~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 145 (150)
....-..+.+..+|..++..+.+.++..|+.++++.- |.-.+.-|...++... .+++|.++-++-..+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 0112224689999999999889999999999999863 1112233444444443 466788887765543
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=6.8e-06 Score=47.77 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHH
Q 031903 45 TEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELR 107 (150)
Q Consensus 45 ~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~ 107 (150)
....+.-.|..+|.+++|.|+..|+..+...+.. .+..+...++..|.+++|.|+..|+.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~---~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP---PEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST---TGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh---hHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3344444555566666666666555554432211 22345555556666666666666554
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.73 E-value=0.00019 Score=51.47 Aligned_cols=64 Identities=34% Similarity=0.688 Sum_probs=53.1
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKL---TDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..+...|...| +++|+|+..++..++...+... ..+++..++...+.|.+|.|++++|+..+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45677888888 8899999999999998776433 4678899999999999999999999987654
No 100
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00037 Score=40.00 Aligned_cols=60 Identities=28% Similarity=0.645 Sum_probs=45.5
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHh------CC---CC-CHHH----HHHHHHhcCCCCCcceeHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINL------GE---KL-TDDE----VEQMINEADLDGDGQVNYDEFVKM 145 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~---~~-~~~~----~~~~~~~~d~~~~g~i~~~eF~~~ 145 (150)
--.-|++.|.++++.++-=|+..++... |. ++ ++.+ ++.+++.-|.|+||.|+|-||++.
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3456889999999999999999988654 21 22 3334 455666679999999999999875
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.56 E-value=0.00054 Score=37.53 Aligned_cols=63 Identities=19% Similarity=0.427 Sum_probs=49.4
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVIRSLDQ--NPTEEELQDMINEVDSD----RNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~v~~~ef~~~~~~~ 76 (150)
+..+|..+.. +.+.|+.++|..+|+.-.. ..+...+..++..+..+ ..+.+++++|..++...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5678888855 7899999999999976553 46788888888887543 46889999999988644
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.54 E-value=0.00016 Score=30.46 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=11.9
Q ss_pred HHHHhcCCCCCcceeHHHHHHHHH
Q 031903 124 QMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 124 ~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.++..+|.+++|.|++.+|..++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHH
Confidence 344445555555555555554443
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.40 E-value=0.00031 Score=29.51 Aligned_cols=26 Identities=58% Similarity=0.959 Sum_probs=17.0
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVIR 38 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l~ 38 (150)
+..+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 44566666776667777777666654
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.34 E-value=0.0061 Score=46.93 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=82.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCH-----HHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTE-----EELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
+..++.....++..|+.+++...|.++..++..++-.+|+.... .++..+.+..+.+.-|+|++.+|...+....
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 34677788899999999999999999999999999999976664 2344444555555568999999999998777
Q ss_pred ccCChHHHHHHHhhhhCCCCCCcccHHHHHH
Q 031903 78 KETDAEEELKEAFKVFDKDQNGYISATELRH 108 (150)
Q Consensus 78 ~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~ 108 (150)
........+..+|..+-++.. ++..+++..
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 666677777888888844443 688888877
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0025 Score=45.77 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
++++++.+-+..-|+.+-++..|+|+-.--+.++.. ..+...++..||...|.+.+|-+++.||+..+...
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 478899999999999999999999998888877755 45778899999999999999999999999998643
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=97.10 E-value=0.0094 Score=44.43 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=54.7
Q ss_pred CCceeHHHHHHHHHHHc-ccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcC-------
Q 031903 61 NGTIEFGEFLNLMAKKM-KETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGE--KLTDDEVEQMINEAD------- 130 (150)
Q Consensus 61 ~~~v~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~~~~~d------- 130 (150)
.|.++|++|..+++... .......++..+|..+-. +.+.++.++|..+|..... ..+.+++..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46788888877776553 222245678888888843 4467888888888876642 345555555544321
Q ss_pred CCCCcceeHHHHHHHHHh
Q 031903 131 LDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 131 ~~~~g~i~~~eF~~~l~~ 148 (150)
....+.++++.|..+|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112245888888888763
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.002 Score=46.23 Aligned_cols=65 Identities=22% Similarity=0.409 Sum_probs=56.4
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..+.+..-|+.+.+|-.|+|+-.--++++.... ++-.++.+||...|.+.||.+++.||+..+..
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 345677789999999999999999999987654 66689999999999999999999999998753
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.94 E-value=0.0043 Score=45.39 Aligned_cols=74 Identities=28% Similarity=0.460 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.++++++...+..|..+|.++.|+++..+..+++...+...+++.++.+.+..+.+-+|.+...+|...+....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999988889999999999999888899999999999987654
No 109
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0059 Score=35.20 Aligned_cols=66 Identities=30% Similarity=0.483 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC----------CCCHHHHHHHH----HhhcCCCCCceeHHHHH
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQ----------NPTEEELQDMI----NEVDSDRNGTIEFGEFL 70 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~----------~~~~~~~~~~~----~~~d~~~~~~v~~~ef~ 70 (150)
+++++.. -..|...|.+++|.|+--++.+++.+..- -.++.++..+. +.-|.|++|.|+|.||+
T Consensus 63 mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 63 MTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred CCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 4555544 25789999999999999999998865421 12344444433 33356677777777776
Q ss_pred HH
Q 031903 71 NL 72 (150)
Q Consensus 71 ~~ 72 (150)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 53
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.85 E-value=0.0031 Score=43.25 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=78.2
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHH
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATVIRSLD---QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKE 88 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (150)
+++.+|..+-.+.++......+...-..+. .+.-+.++.=+|+.+|.+.++.++..|...+.... .+..++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHH
Confidence 567788777666666665555555433332 24556788889999999999999999877665432 5678899
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 89 AFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
.|+..|...+|.|+-.|...++...+ ++...+...+
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 99999999999999999999998776 3333344443
No 111
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.002 Score=49.95 Aligned_cols=138 Identities=20% Similarity=0.380 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc---c--
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM---K-- 78 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~---~-- 78 (150)
.++..+...+..+|..+.+. .|.++....+.++.. -.++...+.++|...|.+.+|.++..+|...+.... .
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 36788888999999999885 788998888887644 456777788899999999999999999997775321 0
Q ss_pred -------------------------------------------------------------------------------c
Q 031903 79 -------------------------------------------------------------------------------E 79 (150)
Q Consensus 79 -------------------------------------------------------------------------------~ 79 (150)
.
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence 0
Q ss_pred CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 80 TDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
+.....+..+|...|.+.+|.|+..+....+...| ++...+.++|...|..+.|.+++.+|.-.+
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred hHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 01123466789999999999999999999988754 778899999999999999999999876544
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.64 E-value=0.023 Score=35.07 Aligned_cols=61 Identities=18% Similarity=0.477 Sum_probs=40.4
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 89 AFKVFDKDQNGYISATELRHVMINLG---EKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
.|..|...+...|+-..|..+++..+ ..++..+++.+|..+-..+...|+|++|+++|..+
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 34444455556788888888888764 35777788888888765555678888888877653
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.56 E-value=0.24 Score=38.75 Aligned_cols=122 Identities=16% Similarity=0.363 Sum_probs=87.0
Q ss_pred hcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcC--CCC-----CceeHHHHHHHHHHHcccCChHHHHHHHhhh
Q 031903 20 FDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDS--DRN-----GTIEFGEFLNLMAKKMKETDAEEELKEAFKV 92 (150)
Q Consensus 20 ~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~-----~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 92 (150)
+-.+..|.|....+.+.+.. +..+..+......+.. +.+ ...+++.|..++..++. ..++..+|..
T Consensus 157 mqvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~k 229 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRK 229 (1189)
T ss_pred hcccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHH
Confidence 34567888888887776644 2322344444444422 222 23567777777766653 2478999999
Q ss_pred hCCCCCCcccHHHHHHHHHHhC----------CCCCHHHHHHHHHhcCCCC----CcceeHHHHHHHHHh
Q 031903 93 FDKDQNGYISATELRHVMINLG----------EKLTDDEVEQMINEADLDG----DGQVNYDEFVKMMMT 148 (150)
Q Consensus 93 ~D~~~~g~i~~~ef~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~ 148 (150)
+..++..+++.+++..++..-. +.+.+..+..++..|.++. .|.++-+-|+.+++.
T Consensus 230 i~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 230 ISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 9999889999999999997542 3467788999999998875 689999999998864
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.0074 Score=45.75 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
+......+++.|+.+|+...|+|+-.+-..+|-.. .++.-.+..||..-|.+++|+++.+||+-.|..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34455678999999999999999999988887654 466778889999999999999999999988753
No 115
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.30 E-value=0.065 Score=41.36 Aligned_cols=137 Identities=16% Similarity=0.251 Sum_probs=88.2
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHH--
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEE-ELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELK-- 87 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~-- 87 (150)
.++++.+...|.+....++..++...+....+..+.. .+.+-|... ...++.++|++|..+..+++-.......+.
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~ 222 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFK 222 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhccc
Confidence 3567888888887888899999999887766554443 333444443 345688999999999988875442221111
Q ss_pred H--HhhhhCCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHhcCCC-----CCcceeHHHHHHHHHh
Q 031903 88 E--AFKVFDKDQNGYISATELRHVMINLGEKLTD---DEVEQMINEADLD-----GDGQVNYDEFVKMMMT 148 (150)
Q Consensus 88 ~--~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~---~~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~ 148 (150)
. +...-+...-..+...+|+++|......... ..++.+++.|-.| ....+...||+.+|.+
T Consensus 223 ~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 223 KDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred chhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 1 2222233444689999999999865432222 2344455554222 3467999999999864
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.22 E-value=0.011 Score=47.95 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=51.2
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 88 EAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
..|+.+|++|.|.|+..+|..++.... +.+..+++.++.....+.+..++|++|++-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 358889999999999999999997543 46778999999999999999999999998764
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.11 E-value=0.13 Score=31.77 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=47.5
Q ss_pred HHhhhh---cCCCCcceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 15 EAFCLF---DKDGDGCITVEELATVIRSLDQ---NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 15 ~~F~~~---d~~~~g~l~~~~~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.+|..| -..+...|+...|.++++..++ .++...+..+|..+...+...|+|++|..++....
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 344444 3566788999999999988663 57888999999998777777899999999987553
No 118
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.00 E-value=0.12 Score=39.34 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=71.1
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q 031903 45 TEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQ 124 (150)
Q Consensus 45 ~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 124 (150)
....+..+|...|.+.+|.+++.+-..+....... -.......+|+..+..+++.+...++..+....+-. + ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHH
Confidence 44567788999999999999999888887655332 244567888888889999999999999988776532 2 5666
Q ss_pred HHHhcCCCCCcceeHHHHHHHHH
Q 031903 125 MINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 125 ~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
+|..+..+ .+.++.+++..++.
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHH
Confidence 66665543 55666666666554
No 119
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.90 E-value=0.016 Score=43.01 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=32.1
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGD 134 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 134 (150)
.-..++|+.+|.+++|.+++.++...+..+...-.-+.+..+++.+|++.+
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 345666777777777777777777766655433333455666666666655
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.018 Score=44.93 Aligned_cols=141 Identities=22% Similarity=0.332 Sum_probs=108.2
Q ss_pred CccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHccc--
Q 031903 2 SEVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKE-- 79 (150)
Q Consensus 2 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~-- 79 (150)
+..+++.+.-.+..+|..+|+..+|.|+..+-..++... .+...-+-++|...+..+.|.++..+|...++.....
T Consensus 2 ~~~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~ 79 (847)
T KOG0998|consen 2 SLGLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQS 79 (847)
T ss_pred CCCCCCCccchHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHhhhhhc
Confidence 345566666788899999999999999999888877654 4677778889999998888999999998887653100
Q ss_pred ---------------------------------------------CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 80 ---------------------------------------------TDAEEELKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 80 ---------------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
......+..+|+.+.+. .|.++....+-++..-.
T Consensus 80 ~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~ 158 (847)
T KOG0998|consen 80 GRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK 158 (847)
T ss_pred ccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC
Confidence 00113456678888655 78888888888776544
Q ss_pred CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 115 EKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
++...+..+|...|.+.+|.++..||.-.+.
T Consensus 159 --Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 159 --LPSDVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred --CChhhhccccccccccccCCCChhhhhhhhh
Confidence 6666778999999999999999999987654
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.49 E-value=0.13 Score=32.12 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=23.4
Q ss_pred CHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 118 TDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
-++.++++|..++..+.+.+++.|...++.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 356788888888887777888888877765
No 122
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.44 E-value=0.032 Score=38.50 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=53.0
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.+..+--+|..+|.+.+|.++..|++.+-.. -.+.-+..+|...|...||.||-.|+.-.+.
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 4567888999999999999999999987653 3356789999999999999999999987764
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.29 E-value=0.02 Score=39.21 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=12.6
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHH
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVM 110 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l 110 (150)
...+..|+..|.++|.+|++.|++.++
T Consensus 370 kC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 370 KCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred HHhhhcchhcccCCCceecHHHHhhhh
Confidence 334444444444444444444444444
No 124
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.05 E-value=0.015 Score=39.81 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLG-EKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
+..++--|..+|.+.++.|...|++-+=+-+- -.-...-...+++-.|.|+|..||+.|+...|.
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 33567779999999999999998766533221 112345678899999999999999999998874
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.99 E-value=0.029 Score=29.56 Aligned_cols=57 Identities=21% Similarity=0.469 Sum_probs=39.9
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC-------CcceeHHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDG-------DGQVNYDEFVKMM 146 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~~l 146 (150)
..+.+..+|+.+ .++.++|+..|+++.+. +++++.+...+..-. .|.++|..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 346788999999 88899999999998864 233455555553222 3779999987543
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.97 E-value=0.3 Score=36.72 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=71.7
Q ss_pred ccCCHHHHHHHHHHhhhh-----------cCCCC---cceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHH
Q 031903 3 EVLTNEQIVEFKEAFCLF-----------DKDGD---GCITVEELATVIRSLD-QNPTEEELQDMINEVDSDRNGTIEFG 67 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~-----------d~~~~---g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ 67 (150)
..|+..+.+.+..+|..- |++.. -++...+|..+++.+. -..+...+.++|...|.+.+|.++|.
T Consensus 496 ~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~ 575 (671)
T KOG4347|consen 496 TSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK 575 (671)
T ss_pred CccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH
Confidence 457788888888877542 11111 1234444455444432 22455667889999999999999999
Q ss_pred HHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHH
Q 031903 68 EFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATEL 106 (150)
Q Consensus 68 ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef 106 (150)
+++..+..... ....+.+.-+|+.+|++++ ....++.
T Consensus 576 ~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 576 DLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999876654 3356788999999999999 8888877
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.78 E-value=0.11 Score=35.45 Aligned_cols=61 Identities=23% Similarity=0.434 Sum_probs=45.3
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINL-----GEKLTDDE-----------VEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
.+..|...|.+++|+++..++..++... ...-.+.+ -.++++..|+|.|.-|+++||++.-
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 4556777889999999999999887532 22222211 2457888999999999999998753
No 128
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.61 E-value=0.4 Score=26.74 Aligned_cols=61 Identities=16% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINL-------GE----KLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
++++.+|+.+ .|.+|.++...|..++... |. ...+..++.+|... .....|+.++|+..++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4566677777 5666777777777666543 11 12445555556555 2445678888877765
No 129
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.54 E-value=0.18 Score=37.54 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=52.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCC-CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNP-TEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
..|++.-+..+..+|..+|.++||.++..++..+........ ....-. .. --.+..|.+++..|+..+...
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~--~~-t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK--DS-TVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc--cc-ceecccceeehhhHHHHHHHH
Confidence 468999999999999999999999999999999998765322 100000 00 012357899999999888543
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=94.50 E-value=0.84 Score=34.56 Aligned_cols=87 Identities=8% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC-ChHHHHHHHhhhh----C--
Q 031903 24 GDGCITVEELATVIRSLDQ--NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET-DAEEELKEAFKVF----D-- 94 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 94 (150)
+.|.++.++|..+.+.+.. ....+++..+|..+..+ .+.++.++|..++....... ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988877652 34788999999999654 46899999999998765432 2233444444332 1
Q ss_pred -CCCCCcccHHHHHHHHH
Q 031903 95 -KDQNGYISATELRHVMI 111 (150)
Q Consensus 95 -~~~~g~i~~~ef~~~l~ 111 (150)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12334589999999885
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.39 E-value=0.12 Score=38.32 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=56.6
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.+.-|..+|.++.|+++..+..++++..+.+.+.+....++...+.+..|.+...||.+++..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 445688899999999999999999999988889999999999999999999999999988754
No 132
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=94.08 E-value=0.51 Score=26.65 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC---CCCceeHHHHHHHHHHH
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSD---RNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~v~~~ef~~~~~~~ 76 (150)
.+..+.+.|..+-. +|+|+...|..++ |..-+++.+.++|..+... ....|+.+|+..++...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 47788888988876 8999999998876 5557788888888877432 24678888887777543
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=94.03 E-value=0.42 Score=27.16 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCcceeHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcc
Q 031903 24 GDGCITVEELATVIRSLD--QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYI 101 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 101 (150)
-||.++..|...+-..+. ..++..+...+...+........++.+|...+...........-+..+|...- .||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 378888888777654332 35677777777777766555668888998888765533333344555565553 44667
Q ss_pred cHHHHHHH
Q 031903 102 SATELRHV 109 (150)
Q Consensus 102 ~~~ef~~~ 109 (150)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 77665543
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=93.45 E-value=0.86 Score=27.61 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=36.6
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhhc-------CCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCC
Q 031903 26 GCITVEELATVIRSLDQNPTEEELQDMINEVD-------SDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQ 97 (150)
Q Consensus 26 g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 97 (150)
+.|++.+|.++-.-.. .+...++.++..|. -+..+.|+|+.|..+|...+...-..+-.+++|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4566667666432211 12223444444442 2335689999999999988877666777888998885433
No 135
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.13 E-value=0.43 Score=37.45 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTD-----DEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
..++.+|+.++....|..+.+++..++...|..... .++..++...|.+..|.+++.+|...|..
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 568889999999999999999999999999987764 34555666667777899999999998753
No 136
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.87 E-value=0.3 Score=40.42 Aligned_cols=58 Identities=19% Similarity=0.472 Sum_probs=46.9
Q ss_pred HhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 031903 16 AFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMA 74 (150)
Q Consensus 16 ~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~ 74 (150)
-|..+|+++.|.|+..+|.+++..- ...+..++..+..-...+.+..++|++|+..+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3677999999999999999988642 456777777777777778889999999997664
No 137
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=90.49 E-value=0.77 Score=24.30 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 61 NGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 61 ~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
+..++|...+..+...+... ....+...|..+ ..+.|+.+||.+.++..
T Consensus 6 sp~~~F~~L~~~l~~~l~~~-~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPPS-KMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCCHH-HHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 44577777777777775433 334445555555 67788888888888765
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.46 E-value=1.6 Score=33.01 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=14.7
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 45 TEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 45 ~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
...++..+|..+.. ++.++.++|..++...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~ 52 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDV 52 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh
Confidence 33455555555532 2455555555555443
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=90.19 E-value=2.2 Score=32.21 Aligned_cols=64 Identities=13% Similarity=0.345 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC-ChHHHHHHHhhhhCCC----CCCcccHHHHHHHH
Q 031903 45 TEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET-DAEEELKEAFKVFDKD----QNGYISATELRHVM 110 (150)
Q Consensus 45 ~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~----~~g~i~~~ef~~~l 110 (150)
+.+++..+|..+.. ++.++.++|..++....... ...+.+..++..+... ..|.++.+.|..+|
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 45556666655542 23566666666554432211 1223344444444321 12345555554444
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=89.41 E-value=2.3 Score=23.39 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQMINEADLDG 133 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (150)
.||.+|+....+.++.+++++++..++..+-.++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKN 47 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 4788888888888888888888888777765444
No 141
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.35 E-value=2.5 Score=23.61 Aligned_cols=63 Identities=17% Similarity=0.405 Sum_probs=37.3
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHc-------C----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSL-------D----QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
..++-+|..+ .+++|.++...|..+|+.. | ....+..++..|... .....|+.++|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 4566788888 6788999999888877532 1 112556666677665 235668888888888644
No 142
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.03 E-value=0.9 Score=31.30 Aligned_cols=61 Identities=28% Similarity=0.558 Sum_probs=42.0
Q ss_pred HhhhhcCCCCcceeHHHHHHHHHH-c----CCCCCHHHH-----------HHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 16 AFCLFDKDGDGCITVEELATVIRS-L----DQNPTEEEL-----------QDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 16 ~F~~~d~~~~g~l~~~~~~~~l~~-~----~~~~~~~~~-----------~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.|...|.|++|+++..++..++.. + .....++++ ..+++.+|.|.+..|+.++|+......
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 466778899999999998887643 1 111222221 235666788999999999998876544
No 143
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.89 E-value=3.1 Score=31.68 Aligned_cols=65 Identities=17% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhcCC-------CCCcceeHHHHHHHHHh
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGE---KLTDDEVEQMINEADL-------DGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~l~~ 148 (150)
..++..+|..+. .+.+.++.++|.++|...+. ..+.+.+..++..+-. -..+.++++.|..+|.+
T Consensus 28 ~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345666666663 22356666666666665541 1234444444443211 12335777777777653
No 144
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.80 E-value=3.7 Score=24.94 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=62.0
Q ss_pred HHhhhhcCCCCcceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhh
Q 031903 15 EAFCLFDKDGDGCITVEELATVIRSL--DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKV 92 (150)
Q Consensus 15 ~~F~~~d~~~~g~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 92 (150)
-+|..... ||.++..|...+..-+ .+.++..++..+......-+...+++-.|...+...+......+-+...|..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55666654 6778887766643322 3667888888888877766777899999999998777655555566666766
Q ss_pred hCCCCCCcccHHHHHHHH
Q 031903 93 FDKDQNGYISATELRHVM 110 (150)
Q Consensus 93 ~D~~~~g~i~~~ef~~~l 110 (150)
.- .||.++..|-.-+.
T Consensus 112 a~--ADg~l~e~Ed~vi~ 127 (148)
T COG4103 112 AY--ADGELDESEDHVIW 127 (148)
T ss_pred HH--ccccccHHHHHHHH
Confidence 54 45566666544433
No 145
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=87.71 E-value=2.7 Score=22.08 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
++-+++..++...|..+++.++..+++.-+..+.-..+-..+.++|.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 33456777777777778888888877776555444555555555543
No 146
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=0.93 Score=32.03 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCCCcceeHHHHHH
Q 031903 83 EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTD-DEVEQMINEADLDGDGQVNYDEFVK 144 (150)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~ 144 (150)
.+.++++|+.+|+.+.|+|+.+-++.++...+..+++ +.+...-...|+..-|.|-.++|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 3679999999999999999999999999998855554 3444444556666666665555543
No 147
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.25 E-value=1.1 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 031903 44 PTEEELQDMINEVDSDRNGTIEFGEFLNLMA 74 (150)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~ 74 (150)
+++++...+|..+..|..|++.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788999999999999999999999998775
No 148
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=85.38 E-value=3.9 Score=21.63 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=31.5
Q ss_pred CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 25 DGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 25 ~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.-.+++..+..++.. .++...+..+...|+.=..+.|+-++|+..++...
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 345665555555543 45666666666666554567788888888887653
No 149
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.49 E-value=6.3 Score=30.03 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=45.5
Q ss_pred HHHHHhhhhcCCCCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhcC-CCCCceeHHHHHHHHHH
Q 031903 12 EFKEAFCLFDKDGDGCITVEELATVIRSLDQ--NPTEEELQDMINEVDS-DRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 12 ~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~v~~~ef~~~~~~ 75 (150)
.+..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45556666643 479999999999987663 3567778888877532 23567999999999975
No 150
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.29 E-value=2.5 Score=35.90 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCC----CHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNP----TEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
.|++.+.+.+.+++..+|++..|.|...++..+++.+..++ ..+. +.+...+....++.|++.+-+-++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 58999999999999999999999999999999998875432 2222 334444555678899998877776543
No 151
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=83.94 E-value=5.4 Score=22.00 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 44 PTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
+++.++...++..-.+ .-.|++.+|...+...-..... .....+=..+|--.+++|+.=||--+.+-+
T Consensus 4 ITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3444555555443222 2346666666666555443322 222223334555666666666665555443
No 152
>PLN02223 phosphoinositide phospholipase C
Probab=83.65 E-value=6.3 Score=29.67 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=34.8
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhcCCCC--------CcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVM---INLG--EKLTDDEVEQMINEADLDG--------DGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l---~~~~--~~~~~~~~~~~~~~~d~~~--------~g~i~~~eF~~~l~~ 148 (150)
+.++.+|..+ ..+.|.++.+.+.+++ ...+ ...+.+++..++..+-... .+.++.+.|..+|.+
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4566666666 3455666666666665 3322 2344455555554432211 245777777777754
No 153
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=83.44 E-value=2.3 Score=22.46 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-------CCCCceeHHHHHH
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDS-------DRNGTIEFGEFLN 71 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~~~v~~~ef~~ 71 (150)
+++...|+.+ .+++++||..++.+.|. .+.+..+...+.. ...|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4677789999 78889999999998742 1222334444422 1236788887764
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=83.29 E-value=9.6 Score=29.01 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHHHHH
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQ--NPTEEELQDMINEVDSD----RNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~v~~~ef~~~~~~~ 76 (150)
+++|+. .+|..+-. ++.|+.++|..+|..... ..+.+.+..++..+... ..|.++.+.|..++...
T Consensus 22 ~~~ei~---~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIK---RLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHH---HHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 444444 45666643 368999999999987653 35567788888887543 34679999999998643
No 155
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.91 E-value=2.1 Score=16.83 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=10.2
Q ss_pred cCCCCcceeHHHHHHHH
Q 031903 21 DKDGDGCITVEELATVI 37 (150)
Q Consensus 21 d~~~~g~l~~~~~~~~l 37 (150)
|.|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 45677777776665543
No 156
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=81.96 E-value=14 Score=25.25 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCCcceeHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHH----HHHHhhhhCCC
Q 031903 23 DGDGCITVEELATVIRSLD--QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEE----LKEAFKVFDKD 96 (150)
Q Consensus 23 ~~~g~l~~~~~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~----~~~~f~~~D~~ 96 (150)
.-||.|+..|... .+.+- ..++.+....+...+........++.+|+..+...+... .+. +...|...=
T Consensus 67 kADG~Vse~Ei~~-~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r--~~l~~~lL~~l~~vA~-- 141 (267)
T PRK09430 67 KAKGRVTEADIRI-ASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGR--FDLLRMFLEIQIQAAF-- 141 (267)
T ss_pred hcCCCcCHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH--
Confidence 3589999999883 33321 345566633444444444445588999998887655322 122 233444432
Q ss_pred CCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 031903 97 QNGYISATELRHVMINL-GEKLTDDEVEQMINE 128 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~ 128 (150)
.||.++..|-.-+.+.. ...+++.++..+...
T Consensus 142 ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 142 ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45778888755444322 244777777666554
No 157
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=81.58 E-value=7.4 Score=21.95 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=43.7
Q ss_pred CCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc--ccCChHHHHHHHhhhhCCCCCCc
Q 031903 24 GDGCITVEELATVIRSLD-QNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM--KETDAEEELKEAFKVFDKDQNGY 100 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~ 100 (150)
-||.++..|...+-+.+. ...+......+...+........++.+|...+.... ........+..+|...- .||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCC
Confidence 478888887666544332 233344444444444332233367788887776643 22222334455555543 3466
Q ss_pred ccHHHHHH
Q 031903 101 ISATELRH 108 (150)
Q Consensus 101 i~~~ef~~ 108 (150)
++..|-.-
T Consensus 90 ~~~~E~~~ 97 (106)
T cd07316 90 LSEAEREL 97 (106)
T ss_pred CCHHHHHH
Confidence 77666543
No 158
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=81.33 E-value=7.1 Score=21.54 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=45.9
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcc--cCChHHHHHHHhhhh
Q 031903 26 GCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMK--ETDAEEELKEAFKVF 93 (150)
Q Consensus 26 g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~ 93 (150)
..||..|+.+..+..+.+++.+.+..+...+..+.-.-.+-++=..++..... .+.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999986655555555555555443322 222334455555544
No 159
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.25 E-value=6 Score=30.62 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccC-------ChHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 031903 47 EELQDMINEVDSDRNGTIEFGEFLNLMAKKMKET-------DAEEELKEAFKVFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 47 ~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~-------~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 111 (150)
+.++.+|..+|. .+|.++-+++..++....... ...+....++...|.++.|++..+++...+.
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 344444444444 455555555555544332211 1112233344445555555555555555544
No 160
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=81.23 E-value=1.3 Score=26.62 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCcceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcc
Q 031903 24 GDGCITVEELATVIRSL--DQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYI 101 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 101 (150)
-||.++..|...+...+ ....+......+...++.......++.+++..+...........-+..++.....|| .+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG--~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADG--EI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTT--C-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC--CC
Confidence 47888888887766554 233445555555555543333456677776665543332223344556666665544 44
Q ss_pred cHHH
Q 031903 102 SATE 105 (150)
Q Consensus 102 ~~~e 105 (150)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 4433
No 161
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.75 E-value=2.2 Score=30.26 Aligned_cols=64 Identities=19% Similarity=0.377 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHH-HhhcCCCCCceeHHHHHHHH
Q 031903 10 IVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMI-NEVDSDRNGTIEFGEFLNLM 73 (150)
Q Consensus 10 ~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~-~~~d~~~~~~v~~~ef~~~~ 73 (150)
-.++++.|..+|+.++|+|+..-+..++..++...+++..--+. ..++...-|.|-..+|....
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 35788899999999999999999999998887555554433333 33455444555555554444
No 162
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.62 E-value=29 Score=28.16 Aligned_cols=79 Identities=9% Similarity=0.342 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHccc---------CChHHHHHHHhhhhCCCC----
Q 031903 31 EELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKE---------TDAEEELKEAFKVFDKDQ---- 97 (150)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~---------~~~~~~~~~~f~~~D~~~---- 97 (150)
..|..++..+ ....++..||..+..+....++.++++.++...... ......+..+...+.++.
T Consensus 208 e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 208 EKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 3444444443 445789999999988877899999999999865432 223456777888876554
Q ss_pred CCcccHHHHHHHHHH
Q 031903 98 NGYISATELRHVMIN 112 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~ 112 (150)
+|.|+.+-|.+.+-.
T Consensus 285 ~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccchhhhHHHhhC
Confidence 688999998887753
No 163
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=79.71 E-value=3.8 Score=23.14 Aligned_cols=53 Identities=11% Similarity=-0.025 Sum_probs=26.9
Q ss_pred CCceeHHHHHHHHHHHcc-cCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 61 NGTIEFGEFLNLMAKKMK-ETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 61 ~~~v~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
+|.++-.|-..+-..... ..........+...+........+..++.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 677887765554433211 11122334444444433344556777777766643
No 164
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=79.71 E-value=9 Score=22.09 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=16.0
Q ss_pred hhcCCCCCceeHHHHHHHHHH
Q 031903 55 EVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 55 ~~d~~~~~~v~~~ef~~~~~~ 75 (150)
.+|...+..|+.++...+++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC
Confidence 357777888998888887764
No 165
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=79.67 E-value=5.2 Score=18.96 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhcC--CCCcceeHHHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFDK--DGDGCITVEELATVIRS 39 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~--~~~g~l~~~~~~~~l~~ 39 (150)
.-+..+..+|..|.. .+...++..+|..++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345677788888863 24577888888888764
No 166
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=78.92 E-value=10 Score=21.95 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
+...|-.++.-++...+..++..+|...|.....+.+..++..+ +|+ +.++.+..=+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G~ek 61 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAGREK 61 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHhHHH
Confidence 34556677777777899999999999999999999999999887 344 677777655443
No 167
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.80 E-value=15 Score=28.28 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=45.2
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhcC-------CCCCceeHHHHHHHHHH
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVIRSLDQ---NPTEEELQDMINEVDS-------DRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~~~v~~~ef~~~~~~ 75 (150)
..+..+|..+-.++ +.|+.++|..+|..... ..+...+..++..+.. -..+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45667788885434 89999999999987652 2466667777754421 12356999999998865
No 168
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=78.57 E-value=12 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~ 111 (150)
+..++..||++++|.|+.-.|+-.+.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 45567788888888888888877664
No 169
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=77.54 E-value=4.4 Score=20.82 Aligned_cols=26 Identities=4% Similarity=0.295 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
.|+.++|..+++.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48889999999988888888777653
No 170
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=77.50 E-value=4.6 Score=20.99 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 031903 97 QNGYISATELRHVMINLGEKLTDDEVEQMINEADLDG 133 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (150)
.++.++..++.+.+...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567889999999988888888888888888887654
No 171
>COG5562 Phage envelope protein [General function prediction only]
Probab=74.03 E-value=2.5 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=20.3
Q ss_pred HHHHHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 123 EQMINEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 123 ~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
..+-.....+..|..+|+||+..+..+|
T Consensus 75 ~~i~~al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 75 TLIKTALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhCC
Confidence 3445555566788888888888887776
No 172
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=72.85 E-value=12 Score=27.84 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChH
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAE 83 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~ 83 (150)
.+..+.++....+|++.-+.+...++..++..++..+|......+--..|..-+.. ...+.|..+...+.+-+...
T Consensus 478 tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel~D~--- 553 (612)
T COG5069 478 TLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSELVDY--- 553 (612)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHhhhhcCh---
Confidence 45667788888999998887888899999999999998765544444444333222 22466666666665544322
Q ss_pred HHHHHHhhhh
Q 031903 84 EELKEAFKVF 93 (150)
Q Consensus 84 ~~~~~~f~~~ 93 (150)
..+...|..+
T Consensus 554 d~v~~~~~~f 563 (612)
T COG5069 554 DLVTRGFTEF 563 (612)
T ss_pred hhhhhhHHHH
Confidence 2344444444
No 173
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=72.57 E-value=39 Score=26.89 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhcCCC-CcceeHHHHHHHHHH--------cCCC----CCHH-HHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 10 IVEFKEAFCLFDKDG-DGCITVEELATVIRS--------LDQN----PTEE-ELQDMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 10 ~~~~~~~F~~~d~~~-~g~l~~~~~~~~l~~--------~~~~----~~~~-~~~~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
..-..++|..++..+ +..+...+...+|.. .|.- +..+ -++-+++.||....|.|..-+|.-.+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 344566777776554 445555655555422 2211 1111 2456888999999999998888777765
Q ss_pred HcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHH-------HH------hC-CCCCHHHHHHHHHhcCCCCCcceeHHH
Q 031903 76 KMKETDAEEELKEAFKVFDKDQNGYISATELRHVM-------IN------LG-EKLTDDEVEQMINEADLDGDGQVNYDE 141 (150)
Q Consensus 76 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l-------~~------~~-~~~~~~~~~~~~~~~d~~~~g~i~~~e 141 (150)
++.. ..++.++.+|...-.++...+ ...|-.++ +. +| .++. ..++..|. ..++-..|+...
T Consensus 499 lck~-~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNve-psvrsCF~--~v~~~pei~~~~ 573 (966)
T KOG4286|consen 499 LCKA-HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIE-PSVRSCFQ--FVNNKPEIEAAL 573 (966)
T ss_pred Hhcc-hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCC-hHHHHHHH--hcCCCCcchHHH
Confidence 5443 366778899999865554443 44444443 22 23 3333 35666676 335566899999
Q ss_pred HHHHHH
Q 031903 142 FVKMMM 147 (150)
Q Consensus 142 F~~~l~ 147 (150)
|+..+.
T Consensus 574 f~dw~~ 579 (966)
T KOG4286|consen 574 FLDWMR 579 (966)
T ss_pred HHHHhc
Confidence 987653
No 174
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=70.11 E-value=13 Score=19.00 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=25.0
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031903 26 GCITVEELATVIRSLDQNPTEEELQDMINEV 56 (150)
Q Consensus 26 g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 56 (150)
-.+|.+++...+..++-.++..++..+|...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578888888888888888888888888765
No 175
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=69.14 E-value=17 Score=20.06 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=38.2
Q ss_pred CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 25 DGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 25 ~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
.-.|+..+|...++......+..+...+-..+|..+++.||.=||--+.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 467999999999988765555567777888899999999998777766553
No 176
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=69.06 E-value=14 Score=19.14 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
+-.|+.+.++..+...|.+.|+..+..+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45699999999999999999999998888765
No 177
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=68.85 E-value=2.1 Score=27.60 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 96 DQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 96 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
..+|+++..|+.-+-..+ + .-+.-...+|.-.|.|+||.|++.||...+
T Consensus 200 p~d~~~sh~el~pl~ap~-i-pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRAPL-I-PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred CccccccccccccccCCc-c-cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 457888887765432211 1 113456789999999999999999997654
No 178
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=68.24 E-value=25 Score=21.47 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcC
Q 031903 98 NGYISATELRHVMINL-GEKLTDDEVEQMINEAD 130 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~~d 130 (150)
.+.|+.+.|+.+|+.+ ...++++-..++|..|-
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4589999999999976 45677777788888874
No 179
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=67.84 E-value=14 Score=20.91 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCcceeHHHHHHHHHHcC--C---CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCC
Q 031903 24 GDGCITVEELATVIRSLD--Q---NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQN 98 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~--~---~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 98 (150)
-||.++..|...+.+.+. . ......+..++......- ...+..++...+............+..++..... |
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--D 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--c
Confidence 368888888777766553 1 233444555554432210 1234566666666554423233344555555543 3
Q ss_pred CcccHHHH
Q 031903 99 GYISATEL 106 (150)
Q Consensus 99 g~i~~~ef 106 (150)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 45655543
No 180
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=67.69 E-value=22 Score=20.66 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=35.1
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 88 EAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
.+|-.++..++...+-.+++.++...|....++.++.++..+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 3455555667777899999999999999999999999988874
No 181
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=65.77 E-value=16 Score=23.42 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 94 DKDQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 94 D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
..+.+|++..+++.+.+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3567788888888888887776777888888777654
No 182
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=65.57 E-value=23 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=15.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031903 96 DQNGYISATELRHVMINLGEKLTDDEVEQMINE 128 (150)
Q Consensus 96 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 128 (150)
+.+|++..+++.+.++..+..++.+.+..+...
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 344555555555544433333444444444443
No 183
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=65.55 E-value=19 Score=23.08 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=24.2
Q ss_pred cCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcC
Q 031903 21 DKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDS 58 (150)
Q Consensus 21 d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~ 58 (150)
..+.+|+++.+++.+.++.-+...+.+++..+...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45789999999999988876667888999888877543
No 184
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=64.61 E-value=23 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 146 (150)
.|.||++|-...++......+++.+..+++.++ ||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 566777777777666555555566666666664 5557776654
No 185
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=64.41 E-value=28 Score=26.07 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=45.7
Q ss_pred HHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh---cC-----CCCCceeHHHHHHHHHH
Q 031903 15 EAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV---DS-----DRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 15 ~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~~~v~~~ef~~~~~~ 75 (150)
-+|..+...+++.+++.-|..+|+.+|+..+++.+..++..+ +. ...+.++.+.|..++.+
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 367777666679999999999999999988888877776554 22 23456888888777643
No 186
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=63.94 E-value=27 Score=20.44 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=32.5
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 90 FKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 90 f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
|-.....++..+|.+++..++...|..+.+..+..+++.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 33333456667999999999999999999888888888874
No 187
>PLN02223 phosphoinositide phospholipase C
Probab=63.43 E-value=49 Score=25.22 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=44.2
Q ss_pred HHHHHHhhhhcCCCCcceeHHHHHHHH---HHcC--CCCCHHHHHHHHHhhcCC--------CCCceeHHHHHHHHHH
Q 031903 11 VEFKEAFCLFDKDGDGCITVEELATVI---RSLD--QNPTEEELQDMINEVDSD--------RNGTIEFGEFLNLMAK 75 (150)
Q Consensus 11 ~~~~~~F~~~d~~~~g~l~~~~~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~~~v~~~ef~~~~~~ 75 (150)
..++..|..+- .+.|.++...+.+++ .... ...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34556788873 577899999999988 3332 345667777777655322 2356999999999865
No 188
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=62.53 E-value=8.5 Score=20.91 Aligned_cols=30 Identities=13% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
.|+||.+++..++.... ++++.+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 45666666666665332 5555666655554
No 189
>PRK00523 hypothetical protein; Provisional
Probab=62.40 E-value=22 Score=18.92 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
+-.|+.+.++..+...|.+.|+..+..+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999888776
No 190
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=62.07 E-value=34 Score=20.98 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=44.1
Q ss_pred CceeHHHHHHHHHHHc-------ccCC-hH---HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH----
Q 031903 62 GTIEFGEFLNLMAKKM-------KETD-AE---EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMI---- 126 (150)
Q Consensus 62 ~~v~~~ef~~~~~~~~-------~~~~-~~---~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~---- 126 (150)
..|++++|...+.... .... .. .....+|..+ |...=+.+-+..+|..++++++..++
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g~ 119 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQGT 119 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcCC
Confidence 4688899887775442 0000 11 2233444443 33333444556677777777777766
Q ss_pred ------HhcCCCCCcceeHHHHHHHH
Q 031903 127 ------NEADLDGDGQVNYDEFVKMM 146 (150)
Q Consensus 127 ------~~~d~~~~g~i~~~eF~~~l 146 (150)
.-+..+..|..+-..+.+++
T Consensus 120 ~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 120 NPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CchhhhccccCcccCCcCHHHHHhhC
Confidence 11234567888888877653
No 191
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=61.80 E-value=43 Score=22.66 Aligned_cols=48 Identities=13% Similarity=0.307 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031903 4 VLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVD 57 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 57 (150)
.||..|++.+.+++..++. ++|.++..++..-+ .++..-+...++.+.
T Consensus 176 tLSySEleAv~~IL~~L~~-~egrlse~eLAerl-----GVSRs~ireAlrkLE 223 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDG-NEGLLVASKIADRV-----GITRSVIVNALRKLE 223 (251)
T ss_pred hccHhHHHHHHHHHHHhcc-ccccccHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence 5788888888888888854 35788888777654 355656666666653
No 192
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.34 E-value=33 Score=21.93 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHcc-----
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMAKKMK----- 78 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~~~~~----- 78 (150)
.....++++|.-+|+..--.++.+++.+++..-++-.+...+..+.... +.. .+ ++.+|+..+....+
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~-~e--sf~~ylW~fv~~~Pi~~~~ 126 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLE-QN--DLVEFLWSFVNHQPQPRQR 126 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHH-Hc--cHHHHHHhccCCCCccCCc
Confidence 3456789999999999888899999999998877666666665544321 111 12 78888755532111
Q ss_pred -----cCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 031903 79 -----ETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGE 115 (150)
Q Consensus 79 -----~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~ 115 (150)
.+........+.+.+-+.|-..+..--...+|.+.|.
T Consensus 127 ~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 127 PTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0111123455555555566677777777777777763
No 193
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=59.61 E-value=23 Score=18.36 Aligned_cols=20 Identities=15% Similarity=0.581 Sum_probs=13.0
Q ss_pred hhCCCCCCcccHHHHHHHHH
Q 031903 92 VFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 92 ~~D~~~~g~i~~~ef~~~l~ 111 (150)
.||...+.+|+.+++.++..
T Consensus 11 LYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred cccCCCceeEeHHHHHHHHH
Confidence 45666666677777666654
No 194
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=59.36 E-value=27 Score=21.24 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhcCCCCCc-ceeHHHHHHH
Q 031903 97 QNGYISATELRHVMINLG---------EKLTDDEVEQMINEADLDGDG-QVNYDEFVKM 145 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 145 (150)
|+..||.+||.+++..-. ..+.++++..+...+...+.+ .+++.|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 667899999999987542 246788999999998876665 4998887765
No 195
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=59.32 E-value=33 Score=19.94 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=32.3
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 90 FKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 90 f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
|-.....++..+|.+++..+++..|..+.+..+..+++.+.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 33333456668999999999999999998888888888774
No 196
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=58.67 E-value=12 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=18.3
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
..-+|..+-...-+.+++++|+.+|..+.
T Consensus 59 t~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 59 TDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred cceeeeeccccccccccHHHHHHHHHHHH
Confidence 34456666555566777777777776553
No 197
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=58.34 E-value=28 Score=18.93 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC-cceeHHHHHHHH
Q 031903 102 SATELRHVMINLGEKLTDDEVEQMINEADLDGD-GQVNYDEFVKMM 146 (150)
Q Consensus 102 ~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l 146 (150)
..+++...|. |.+.+.+.+...+...+.+.. +.++.+||++++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666663 556778888888888865543 578888888764
No 198
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=57.89 E-value=39 Score=21.60 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHH
Q 031903 22 KDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFG 67 (150)
Q Consensus 22 ~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ 67 (150)
.+.+|+++.+++...++.-+...+.+++.++...-+ .++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 468999999999998875455688888888875533 4445443
No 199
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.05 E-value=32 Score=25.09 Aligned_cols=56 Identities=27% Similarity=0.461 Sum_probs=42.6
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q 031903 86 LKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVK 144 (150)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 144 (150)
...+|-.+. .-+|+|+-..-+.-+-. .+++...+-.+|+..|.+.||-++-+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 566776663 34688887766665543 456677889999999999999999999963
No 200
>PF13551 HTH_29: Winged helix-turn helix
Probab=56.56 E-value=34 Score=19.22 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHH--HHcCCCCCHHHHHHHHHh
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVI--RSLDQNPTEEELQDMINE 55 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l--~~~~~~~~~~~~~~~~~~ 55 (150)
+++++...+.+.+......+.+..+...+...+ ...+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 667777777766666544433456667776643 234566666666666543
No 201
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.80 E-value=64 Score=22.07 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHhhhh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 85 ELKEAFKVF-DKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 85 ~~~~~f~~~-D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
.+...|..+ |+..+..|..+-+..++...|....+-...-+.=.+....-+..+..+|+.-+..+
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 344444443 44444566666677777766644332222222222233344566666666655443
No 202
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=54.53 E-value=19 Score=17.61 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEADLDG 133 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (150)
.|.|+..+|+..+. ++...+-.++..+|..+
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 67899999998874 66777777777776543
No 203
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.93 E-value=33 Score=18.18 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
+-.|+.+-++..+...|.+.|+..++.+++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45799999999999999999999999888765
No 204
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.36 E-value=41 Score=20.67 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=4.4
Q ss_pred ccHHHHHHHHH
Q 031903 101 ISATELRHVMI 111 (150)
Q Consensus 101 i~~~ef~~~l~ 111 (150)
++...|-..++
T Consensus 83 ~d~y~fts~l~ 93 (148)
T COG4103 83 IDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 205
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=52.95 E-value=26 Score=16.74 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 031903 102 SATELRHVMINLGEKLTDDEV 122 (150)
Q Consensus 102 ~~~ef~~~l~~~~~~~~~~~~ 122 (150)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888888988887765
No 206
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=52.60 E-value=34 Score=17.98 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031903 30 VEELATVIRSLDQNPTEEELQDMINEVD 57 (150)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d 57 (150)
..++..++...+..++..++..+++.-+
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 3456666666666666666666665543
No 207
>PRK01844 hypothetical protein; Provisional
Probab=52.27 E-value=36 Score=18.16 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
+-.|+.+-++..+...|.+.|+..+..+++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999888776
No 208
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.50 E-value=76 Score=21.71 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHhhhh-cCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 10 IVEFKEAFCLF-DKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 10 ~~~~~~~F~~~-d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
...+...|+.+ |+..+..|-.+.+.+++..+|..+..-..--+--.+....-+..+.++|+.-+..+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 34566667666 56556789999999999999876554433333333445556788888888866544
No 209
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=51.09 E-value=45 Score=18.95 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=20.5
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 031903 28 ITVEELATVIRSLDQNPTEEELQDMINEVDSDR 60 (150)
Q Consensus 28 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 60 (150)
+...++.-++.-+...++++++..+...+-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~ 52 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARG 52 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcC
Confidence 666677777766666677777777776664333
No 210
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=50.65 E-value=28 Score=24.72 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=40.6
Q ss_pred HHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 87 KEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
......+|..+.|.++..-.+-.+.....+--.+.++.+|.... +..|.+.+-.|.+++.+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 33455679999999998888777765533223456778888775 45576666666666543
No 211
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=50.55 E-value=53 Score=19.60 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINL-GEKLTDDEVEQMINE 128 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~ 128 (150)
..+..++++|- .+.|+.+.+..++... |..++..++..+...
T Consensus 37 ~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 37 DKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 34555555553 2335555555555544 345555555444443
No 212
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=50.38 E-value=57 Score=21.10 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHcc-----
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMAKKMK----- 78 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~~~~~----- 78 (150)
.....++++|.-+|+..=-.++.+++.+++..-++-.+...+..+.... +.. ...-+|.+|+.......+
T Consensus 51 ~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~-~e~gSf~~ylW~fv~~~p~~~~~ 129 (187)
T PRK10353 51 KKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQME-QNGEPFADFVWSFVNHQPQVTQA 129 (187)
T ss_pred HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHH-HhcCCHHHHHhhccCCCcccCCc
Confidence 3456789999999998888889999999988776666666665544321 111 113477777755421110
Q ss_pred -----cCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 79 -----ETDAEEELKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 79 -----~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
.+.....-..+.+.+=+.|-..+..--...+|.+.|
T Consensus 130 ~~~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G 170 (187)
T PRK10353 130 TTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACG 170 (187)
T ss_pred cchhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHC
Confidence 011111223444444445666666666666777666
No 213
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=50.29 E-value=50 Score=22.58 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=6.1
Q ss_pred CCceeHHHHH
Q 031903 61 NGTIEFGEFL 70 (150)
Q Consensus 61 ~~~v~~~ef~ 70 (150)
+|.|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 5666666655
No 214
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.57 E-value=53 Score=24.05 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 031903 14 KEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNL 72 (150)
Q Consensus 14 ~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~ 72 (150)
..+|..+.+ -+|+|+-..-...+- +..++..-+-++|+..|.+.+|.++-+||.-+
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 344555443 335555444444332 12344444555555555555555555555433
No 215
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=48.23 E-value=41 Score=18.30 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q 031903 105 ELRHVMINLGEKLTDDEVEQMIN 127 (150)
Q Consensus 105 ef~~~l~~~~~~~~~~~~~~~~~ 127 (150)
|+..+|+.+|.++++++...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 56667888999999888665543
No 216
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=47.88 E-value=21 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=8.4
Q ss_pred CCcceeHHHHHHHHH
Q 031903 24 GDGCITVEELATVIR 38 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~ 38 (150)
++..|+..++...+.
T Consensus 9 n~eiIt~sel~~~~~ 23 (118)
T PF09312_consen 9 NDEIITQSELEQRLA 23 (118)
T ss_dssp SSSEEEHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHH
Confidence 345566666666543
No 217
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=47.05 E-value=50 Score=18.34 Aligned_cols=49 Identities=6% Similarity=0.203 Sum_probs=24.3
Q ss_pred ceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 27 CITVEELATVIRSLDQ-NPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 27 ~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
.++..+|.+++..+.. ....+.+. +...+-.+.. .++..+...++....
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~-~l~~~~~~~~-~~T~~Qv~~il~~f~ 53 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLK-VLEAAAKTNN-CFTCAQVKQILSLFS 53 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHH-HHHHHHhcCC-ceeHHHHHHHHHHcC
Confidence 3555666666665553 33333333 3333322211 577777777665443
No 218
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.05 E-value=23 Score=30.73 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=44.0
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHhcCCCCCcceeHHHHHHHHH
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTD---DEVEQMINEADLDGDGQVNYDEFVKMMM 147 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~---~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 147 (150)
.-+.+.++|..+|++.+|.|...++..+++.+.+++.- .....+.-.+-...++.|++.+-+..+.
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHH
Confidence 34678999999999999999999999999987544320 0112222223344566777766555543
No 219
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=46.31 E-value=24 Score=22.67 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMA 74 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~ 74 (150)
...+.++++|..+|+.+--.++..++.+++..-|+..+...+..+.... .. +...=+|.+|+..+.
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~l-~~e~Gsf~~flWsf~ 121 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLEL-QKEFGSFSEFLWSFV 121 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHhc
Confidence 3456789999999999999999999999998888777766665544221 11 122345666664443
No 220
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=46.02 E-value=1.2e+02 Score=22.35 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCc---
Q 031903 24 GDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGY--- 100 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--- 100 (150)
....+....|.++|.......+--++..+-..+|..+++.|+--||=-+-+.. ..+..+-+.|+.+-.-+-|+
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF----qPw~tllkNWq~LavtHPGYmAF 262 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF----QPWKTLLKNWQTLAVTHPGYMAF 262 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh----ccHHHHHHhhhhhhccCCceeEE
Confidence 45667888888888765543444555566667788888888765555444332 13345556666665666664
Q ss_pred ccHHHHHHHHHHh
Q 031903 101 ISATELRHVMINL 113 (150)
Q Consensus 101 i~~~ef~~~l~~~ 113 (150)
++.+|++.-+..+
T Consensus 263 LTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 263 LTYDEVKARLQKY 275 (563)
T ss_pred eeHHHHHHHHHHH
Confidence 6778888777655
No 221
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=45.01 E-value=97 Score=22.23 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHhh--hhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHc
Q 031903 4 VLTNEQIVEFKEAFC--LFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKM 77 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~--~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~ 77 (150)
+++.+....+.-.|. .+|+.+.|.++.--..-++..+....-.+.++.+|..+. +.+|.+.+-.|..++...+
T Consensus 101 ~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 101 QIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred cccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH
Confidence 344444444444443 457777777777666666666555555677777887764 3457777666666665544
No 222
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=44.96 E-value=64 Score=18.95 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.0
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 96 DQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 96 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
.++..++.+++..++...|..+.+..+..+++.+.
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 45567999999999999998888888888887774
No 223
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=43.93 E-value=31 Score=15.05 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=9.7
Q ss_pred CCcccHHHHHHHHHH
Q 031903 98 NGYISATELRHVMIN 112 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~ 112 (150)
.|.|+.+++..+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777766654
No 224
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=42.31 E-value=41 Score=15.97 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q 031903 104 TELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKM 145 (150)
Q Consensus 104 ~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 145 (150)
+|....|..+| .++.++..+...... ...++.++.++.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 56667777777 566777777777654 334456665543
No 225
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=41.88 E-value=50 Score=16.87 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578899999999999999888764
No 226
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=41.64 E-value=41 Score=20.37 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCceeHHHHHHHHHHHcccCCh----HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CCCc
Q 031903 61 NGTIEFGEFLNLMAKKMKETDA----EEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADL-DGDG 135 (150)
Q Consensus 61 ~~~v~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g 135 (150)
+..|+..+|...+......... ...-..++.. .|...=+.+..+..|..+++++++..+...-. ..+|
T Consensus 47 g~~It~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g 119 (154)
T PF13624_consen 47 GEKITKSELDRRVQRYSRQYQQQEDEDQLKQQVLDQ-------LIDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENG 119 (154)
T ss_dssp TEEEEHHHHHHHHHHHHHHTT---TTS-HHHHHHHH-------HHHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH-
T ss_pred CEEeCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCC
Confidence 4568888888776642211100 0011112211 13333444445666777888877776666210 0125
Q ss_pred ceeHHHHHHHHHhcC
Q 031903 136 QVNYDEFVKMMMTIG 150 (150)
Q Consensus 136 ~i~~~eF~~~l~~~~ 150 (150)
..+-+.|.+++.+.|
T Consensus 120 ~~~~~~f~~~L~~~g 134 (154)
T PF13624_consen 120 KFDKEAFEEFLKQQG 134 (154)
T ss_dssp ---HHHHHHHHH---
T ss_pred CCCHHHHHHHHHHhh
Confidence 556667776665543
No 227
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=41.56 E-value=68 Score=25.50 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMT 148 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 148 (150)
.....+|+..-..+.-.+..+++..++ .+++++..+..++...++.|+++.|.....+
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 345677888877776677777666544 4678888888888877767999999877654
No 228
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=41.28 E-value=51 Score=16.73 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcc----eeHHHHHHHHHHcCC
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGC----ITVEELATVIRSLDQ 42 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~----l~~~~~~~~l~~~~~ 42 (150)
|.+++++...+...|... |+ .+..+...+...+|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCC
Confidence 568888999998888774 55 666677776666654
No 229
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=41.25 E-value=48 Score=16.49 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 105 ELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 105 ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
|.+..+...|+.++.+.++-++..+
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 4566677777778877776665544
No 230
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=41.17 E-value=96 Score=19.88 Aligned_cols=65 Identities=9% Similarity=0.297 Sum_probs=35.2
Q ss_pred HHHHhhcCCCCC--ceeHHHHHHHHHHHc-ccCChHHHHHHHhhh-hCCCCCCcccHHHHHHHHHHhCCC
Q 031903 51 DMINEVDSDRNG--TIEFGEFLNLMAKKM-KETDAEEELKEAFKV-FDKDQNGYISATELRHVMINLGEK 116 (150)
Q Consensus 51 ~~~~~~d~~~~~--~v~~~ef~~~~~~~~-~~~~~~~~~~~~f~~-~D~~~~g~i~~~ef~~~l~~~~~~ 116 (150)
.+|..+-. ..| .++.+.|+....... ......+....+.+. +-+.....|+..||..++.++|+.
T Consensus 23 ~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 23 SIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 45544433 345 788888887776554 222222222222222 233446678888888888888854
No 231
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=41.13 E-value=68 Score=19.64 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMINEADL 131 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (150)
.+.++++.+......+++++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4667777776666667777787777777764
No 232
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.00 E-value=1.2e+02 Score=22.53 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 031903 44 PTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
++-+-+..|-+.+|.+.+|.|+.+|=-.+++.-+........-...|.- .|..|+.+++......
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 3445567777888888888888876666666555443333333334422 3456888888776654
No 233
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.78 E-value=65 Score=17.80 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhcC
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVDS 58 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~ 58 (150)
|-+|+..+...|+....-=.+.++..+|....+.+. ..++..+-+++++.|..
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~ 65 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEK 65 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHH
Confidence 445555666666655544445566666666665554 45566666666666644
No 234
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.73 E-value=16 Score=18.96 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=9.1
Q ss_pred CcceeHHHHHHHHHhc
Q 031903 134 DGQVNYDEFVKMMMTI 149 (150)
Q Consensus 134 ~g~i~~~eF~~~l~~~ 149 (150)
.|.|+++.|++.++.+
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3556777776666554
No 235
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.43 E-value=1.1e+02 Score=20.44 Aligned_cols=88 Identities=9% Similarity=0.292 Sum_probs=58.3
Q ss_pred CCcceeHHHHHHHHHHcCCC----------CCHHHHHHHHHhhcC-----CCCCceeHHHHHHHHHHHcccCChHHHHHH
Q 031903 24 GDGCITVEELATVIRSLDQN----------PTEEELQDMINEVDS-----DRNGTIEFGEFLNLMAKKMKETDAEEELKE 88 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~d~-----~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (150)
.++.++.+.-..+++.+|.+ ...+++..+-..+.. ...|.|+.+.|...+...+. ......+.+
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ld-aGv~kviPH 209 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALD-AGVEKVIPH 209 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHH-cCCCeeccc
Confidence 45678888888888877632 245666665555432 45788888888888765543 224456777
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHH
Q 031903 89 AFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 89 ~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
+|..+=...+|.-..+++++++..
T Consensus 210 IYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 210 VYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cceeccccccCCCCHHHHHHHHHH
Confidence 887763455777778888877754
No 236
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=40.18 E-value=78 Score=18.58 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=36.5
Q ss_pred HhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 031903 16 AFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNL 72 (150)
Q Consensus 16 ~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~ 72 (150)
.+..+-.-++..+|.+++..++...|.......+..++..+.. .+.++.+..
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa~ 59 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIAA 59 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 3444444556668889999999988888888888888877732 456665553
No 237
>PRK04387 hypothetical protein; Provisional
Probab=39.57 E-value=71 Score=17.93 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhc
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVD 57 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d 57 (150)
|-+|+..+...|.....--..-|..++|....+.+. ..++..+=+++++.|.
T Consensus 12 steEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe 64 (90)
T PRK04387 12 STEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFE 64 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 445555555555555443334456666666555554 4455555555665554
No 238
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=39.04 E-value=72 Score=17.83 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhc
Q 031903 6 TNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLD-QNPTEEELQDMINEVD 57 (150)
Q Consensus 6 ~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d 57 (150)
|-+|+..+...|.....--.+-|+.++|....+.+. ..++..+-+++++.|.
T Consensus 12 steEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe 64 (88)
T PF05256_consen 12 STEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFE 64 (88)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444555555555544433334455555555555544 3445555555555554
No 239
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.97 E-value=72 Score=17.82 Aligned_cols=50 Identities=4% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhcC
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 150 (150)
.|.++.++...+-...+.+-..+.+..++...- .+. ==|..|+..|...|
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~ 80 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKE--GWFSKFLQALRETE 80 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcC
Confidence 456777766666665444455666677776665 322 24677777776654
No 240
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.37 E-value=54 Score=16.22 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=14.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 97 QNGYISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
..|.|+.+||..=+......-+..++..+
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l 48 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDAL 48 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45666666666655544333344444443
No 241
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=37.93 E-value=1.2e+02 Score=19.95 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=40.4
Q ss_pred eeHHHHHHHHHHcC-CCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCccc
Q 031903 28 ITVEELATVIRSLD-QNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYIS 102 (150)
Q Consensus 28 l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 102 (150)
+.-.++..++..+. .+..+..+..+-..+ |.-+.+.++.++|+.+.++.+........+...=-.+..+.+|.++
T Consensus 65 ~~Qk~~S~~l~~lW~~dp~k~~W~l~ak~ys~iRd~~gk~~~~L~~Fl~~~~p~~gi~~p~~YL~~~Gw~l~~~~~g~~~ 144 (201)
T PF04769_consen 65 LPQKELSGILTKLWEKDPFKNKWSLMAKAYSFIRDQLGKDKAPLDQFLAFACPLIGIIPPEDYLEQLGWQLSQNEEGTIT 144 (201)
T ss_pred cCHHHHHHHHHHHHhCCccHhHHHHHhhhhhhhccccccccCCHHHHHHHhhhhcCCCCHHHHHHHcCCeEeeCCCCCEE
Confidence 34445555555443 334433333222222 3334578999999999988877665655554443333344444443
No 242
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=37.83 E-value=62 Score=17.25 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.4
Q ss_pred CCceeHHHHHHHH
Q 031903 61 NGTIEFGEFLNLM 73 (150)
Q Consensus 61 ~~~v~~~ef~~~~ 73 (150)
.|+|.-++|-.++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555554443
No 243
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.41 E-value=53 Score=15.86 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMIN 54 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 54 (150)
..+++.....+..+|.. +.+.+..+...+...+| ++...+..-|.
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 45788888889999888 45778888888777765 55556655553
No 244
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=37.25 E-value=43 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCC
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDG 24 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~ 24 (150)
..||++|++.+......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 3688888888888888888765
No 245
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=36.47 E-value=33 Score=20.54 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=11.8
Q ss_pred CCcceeHHHHHHHHHhcC
Q 031903 133 GDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 133 ~~g~i~~~eF~~~l~~~~ 150 (150)
..|.++|.+|++-+.++|
T Consensus 80 q~Gqtdf~tfC~~~A~AG 97 (125)
T PF07166_consen 80 QQGQTDFETFCKDAAKAG 97 (125)
T ss_dssp HHT---HHHHHHHHHHTT
T ss_pred HcCCccHHHHHHHHHhcC
Confidence 567888888888887776
No 246
>PHA02105 hypothetical protein
Probab=36.40 E-value=62 Score=16.36 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=28.9
Q ss_pred ceeHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCC--CceeHHHHHHHH
Q 031903 27 CITVEELATVIRSLD---QNPTEEELQDMINEVDSDRN--GTIEFGEFLNLM 73 (150)
Q Consensus 27 ~l~~~~~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~--~~v~~~ef~~~~ 73 (150)
.++.++|..++.... +++..+.+..+-..+..-+- -.++|+||..++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 367777887775432 45566666666555544333 357788887765
No 247
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.84 E-value=1.7e+02 Score=23.05 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=12.3
Q ss_pred HHHHhhhhcCCCCcceeHHHHHHHH
Q 031903 13 FKEAFCLFDKDGDGCITVEELATVI 37 (150)
Q Consensus 13 ~~~~F~~~d~~~~g~l~~~~~~~~l 37 (150)
++-.|..+|. .+|.++.+++..++
T Consensus 20 l~~~f~~~~~-~~~~~~~~~~~~~~ 43 (646)
T KOG0039|consen 20 LQTFFDMYDK-GDGKLTEEEVRELI 43 (646)
T ss_pred HHHHHHHHhh-hcCCccHHHHHHHH
Confidence 4444555554 55555555555544
No 248
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=34.46 E-value=49 Score=17.83 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHhhhhc
Q 031903 5 LTNEQIVEFKEAFCLFD 21 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d 21 (150)
|+.+|.+.+..+.+.|-
T Consensus 16 Ls~~Er~~f~h~Ln~Y~ 32 (78)
T cd07356 16 LSEAEREEFIHCLNDYH 32 (78)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 249
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=33.63 E-value=64 Score=15.64 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMI 53 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~ 53 (150)
+.+++++...|..+|.. +.+++..+...+...+| ++...+..-|
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF 48 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWF 48 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCH
Confidence 46788899999999985 46677777777776664 5555555444
No 250
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=32.95 E-value=94 Score=17.39 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHhhhhcCC--CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 031903 3 EVLTNEQIVEFKEAFCLFDKD--GDGCITVEELATVIRSLDQNPTEEELQDMINEVDSD 59 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~--~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 59 (150)
+.|+++++..++......-++ ..+-|+.+.|..+-..+--.-..+.+..+.+.|.-+
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~ 60 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYD 60 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCC
Confidence 356777777777766665332 344577777766543332223334455566665443
No 251
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=32.92 E-value=1.1e+02 Score=18.12 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=18.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
.|.++.+++..-+..-+..+++.++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45666666666555445556666665555544
No 252
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.81 E-value=1e+02 Score=17.80 Aligned_cols=44 Identities=7% Similarity=0.179 Sum_probs=34.7
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 031903 28 ITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKK 76 (150)
Q Consensus 28 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~ 76 (150)
+|.+++..++...|.......+..+.+.+. ..+.++.+.-....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~k 60 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKEL 60 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHhh
Confidence 999999999999999999998888888872 24677777665543
No 253
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=32.47 E-value=58 Score=27.06 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 031903 94 DKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADLDG 133 (150)
Q Consensus 94 D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (150)
|.---|.|+-+.+..++..+|...+.+++..+|..++.+.
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccH
Confidence 4456799999999999999999999999999999987654
No 254
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=32.37 E-value=51 Score=16.81 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=7.3
Q ss_pred hcCCCCcceeHHHHHH
Q 031903 20 FDKDGDGCITVEELAT 35 (150)
Q Consensus 20 ~d~~~~g~l~~~~~~~ 35 (150)
++.+++|+|+...+..
T Consensus 24 ~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 24 MDSNPDGWVPISTILS 39 (61)
T ss_dssp HCTTTTTBEEHHHHTT
T ss_pred HHhcCCCcEeHHHHHc
Confidence 3444455555544433
No 255
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=32.34 E-value=1.4e+02 Score=20.31 Aligned_cols=70 Identities=14% Similarity=0.319 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAK 75 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~ 75 (150)
+-|++.+.+.+.+.|...=.+..|.+-..+..-++..-....+.+++..--..+. ...|.|.+|+.-+..
T Consensus 12 q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 81 (257)
T PRK14074 12 QGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIK---ESLIAYSDFLEDLTK 81 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHH---HHHHHHHHHHHHHHH
Confidence 4689999999999999988889999999999988766444555555443222221 234666666655543
No 256
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=32.25 E-value=1.3e+02 Score=18.70 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhcCCCCcceeHHHHHHHH
Q 031903 8 EQIVEFKEAFCLFDKDGDGCITVEELATVI 37 (150)
Q Consensus 8 ~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l 37 (150)
..+..+.......|.++.++||..+++.++
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHH
Confidence 345566666777788787888888888865
No 257
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=31.99 E-value=1.4e+02 Score=19.11 Aligned_cols=38 Identities=3% Similarity=0.184 Sum_probs=28.7
Q ss_pred hCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcC
Q 031903 93 FDKDQNGYISATELRHVMINLG--EKLTDDEVEQMINEAD 130 (150)
Q Consensus 93 ~D~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~~~~~~~d 130 (150)
+.++...+++.++|.+..+... ..++++.+..++...-
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 3455567899999999988664 4788888888887654
No 258
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=1.4e+02 Score=19.76 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.8
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 031903 95 KDQNGYISATELRHVMINLGEKLTDDEVEQMINEADL 131 (150)
Q Consensus 95 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (150)
.|..|+.+.+++...++..+..++.+.+..+...-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 5678999999999999998888998888777766554
No 259
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.93 E-value=67 Score=15.36 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=18.1
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031903 98 NGYIS-ATELRHVMINLGEKLTDDEVEQMINE 128 (150)
Q Consensus 98 ~g~i~-~~ef~~~l~~~~~~~~~~~~~~~~~~ 128 (150)
.|.|+ ...+.+.+...|..+++..++.+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 35554 44445555566777777766666554
No 260
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=31.59 E-value=1.6e+02 Score=21.00 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=38.3
Q ss_pred HcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 031903 39 SLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVM 110 (150)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l 110 (150)
.+|......++.... ..|.++-+|=+..+... ......+.+..+++.++ |+.+||..++
T Consensus 284 KfG~~~~~~~~s~~I------R~G~itReeal~~v~~~-d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFGRATDHASIDI------RSGRITREEAIELVKEY-DGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred hcCCCcCchHHHHHH------HcCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 466655544444333 25889998877777663 33334567888888887 7777887764
No 261
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=30.56 E-value=98 Score=16.86 Aligned_cols=15 Identities=0% Similarity=0.191 Sum_probs=10.3
Q ss_pred ceeHHHHHHHHHhcC
Q 031903 136 QVNYDEFVKMMMTIG 150 (150)
Q Consensus 136 ~i~~~eF~~~l~~~~ 150 (150)
.-++...++.|..++
T Consensus 57 ~At~~~L~~aLr~~~ 71 (80)
T cd08313 57 YATLQHLLSVLRDME 71 (80)
T ss_pred cchHHHHHHHHHHcC
Confidence 567777777776653
No 262
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=30.20 E-value=1.1e+02 Score=20.53 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=35.4
Q ss_pred cHHHHHHHHH----HhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhc
Q 031903 102 SATELRHVMI----NLGEKLTDDEVEQMINEADLDGDGQVNYDEFVKMMMTI 149 (150)
Q Consensus 102 ~~~ef~~~l~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 149 (150)
+.++++.+.. ..+..++++++..+...+..=.+-.+++.+|.+-+.++
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~l 224 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNNL 224 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 6777777654 45788999998888888766566667788888777654
No 263
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.06 E-value=1.1e+02 Score=17.97 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
-+..|++.++...+..+++++++.++.-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35678888888888778888887776544
No 264
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=29.76 E-value=1.5e+02 Score=18.74 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=18.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCH-HHHHHHHHhcC
Q 031903 97 QNGYISATELRHVMINLGEKLTD-DEVEQMINEAD 130 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~~~~~~~~~-~~~~~~~~~~d 130 (150)
....|+..++..+++..|....+ ..+...|....
T Consensus 112 ~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~ 146 (172)
T cd04790 112 EQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKME 146 (172)
T ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhC
Confidence 34457777777777776633222 33444444443
No 265
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=29.52 E-value=1.1e+02 Score=16.99 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMINE 128 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 128 (150)
|+.+++..+.+-....++++++..+...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6677777777766666777665544333
No 266
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=29.44 E-value=1.1e+02 Score=16.97 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMIN 127 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~ 127 (150)
|+.+++..+.+-....++++++..+..
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 355666666665566666666544433
No 267
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=29.13 E-value=1.1e+02 Score=16.97 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=28.1
Q ss_pred ceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031903 63 TIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQM 125 (150)
Q Consensus 63 ~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 125 (150)
.+++.+++.+ .+...+.....-..+...+ +=|+.+-.+|..-|..+| ++.+++..+
T Consensus 30 ~it~~dL~~~--GL~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~a 85 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEA 85 (87)
T ss_pred cCCHHHHHHC--CCCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 3666665544 1222222333333444444 336666667776666665 555555544
No 268
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=29.00 E-value=91 Score=15.97 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=7.7
Q ss_pred CcccHHHHHHHHHHhC
Q 031903 99 GYISATELRHVMINLG 114 (150)
Q Consensus 99 g~i~~~ef~~~l~~~~ 114 (150)
+.++...+++.+...|
T Consensus 43 ~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 43 RKVDPSKLKEWLDSQG 58 (64)
T ss_pred ceeCHHHHHHHHHHCC
Confidence 3455555555544443
No 269
>PRK10945 gene expression modulator; Provisional
Probab=28.11 E-value=1e+02 Score=16.41 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=15.0
Q ss_pred hHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 82 AEEELKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
..+.+..+|... ...++-.|+..+..+..
T Consensus 20 s~eTLEkvie~~----~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 20 TIDTLERVIEKN----KYELSDDELAVFYSAAD 48 (72)
T ss_pred cHHHHHHHHHHh----hccCCHHHHHHHHHHHH
Confidence 334555555443 23455566666665543
No 270
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=27.49 E-value=99 Score=15.91 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=7.2
Q ss_pred CCcccHHHHHHHHH
Q 031903 98 NGYISATELRHVMI 111 (150)
Q Consensus 98 ~g~i~~~ef~~~l~ 111 (150)
+|.+...++...+.
T Consensus 21 ~g~v~ls~l~~~~~ 34 (74)
T PF12872_consen 21 DGWVSLSQLGQEYK 34 (74)
T ss_dssp TSSEEHHHHHHHHH
T ss_pred CceEEHHHHHHHHH
Confidence 34555555554443
No 271
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=27.21 E-value=2.4e+02 Score=21.56 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc---CC----C-CCcceeHHHHHHHH
Q 031903 88 EAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEA---DL----D-GDGQVNYDEFVKMM 146 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~---d~----~-~~g~i~~~eF~~~l 146 (150)
-+|..+-...++.+++.-|..+|+..|..-++..+..++..+ +. + ..+.++-+.|.+++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 355555333358899999999999999877766666554433 32 2 23568888887765
No 272
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.19 E-value=82 Score=19.93 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=8.1
Q ss_pred eHHHHHHHHHHHcc
Q 031903 65 EFGEFLNLMAKKMK 78 (150)
Q Consensus 65 ~~~ef~~~~~~~~~ 78 (150)
+.+||++.++..+.
T Consensus 2 ~k~efL~~L~~~L~ 15 (181)
T PF08006_consen 2 NKNEFLNELEKYLK 15 (181)
T ss_pred CHHHHHHHHHHHHH
Confidence 45566666665544
No 273
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=26.69 E-value=53 Score=14.79 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=15.3
Q ss_pred hcCCCCcceeHHHHHHHHHHc
Q 031903 20 FDKDGDGCITVEELATVIRSL 40 (150)
Q Consensus 20 ~d~~~~g~l~~~~~~~~l~~~ 40 (150)
-|..+++.++...|.+++.++
T Consensus 7 kdit~~ntltkrgfykligcl 27 (41)
T PF13121_consen 7 KDITKDNTLTKRGFYKLIGCL 27 (41)
T ss_pred eeccCCCeeehhhHHHHHHHH
Confidence 456677888888888876553
No 274
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=26.33 E-value=2e+02 Score=18.96 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCCCCcce
Q 031903 120 DEVEQMINEADLDGDGQV 137 (150)
Q Consensus 120 ~~~~~~~~~~d~~~~g~i 137 (150)
+.+-.+.+.+|++..|.|
T Consensus 209 ~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 209 PKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred HHHHHHHHhcCCCCcCce
Confidence 345667777777776655
No 275
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=26.31 E-value=1.6e+02 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHH-----HhCCCCCHHHHHHHHHhc-CC---CCCcceeHHHHHH
Q 031903 98 NGYISATELRHVMI-----NLGEKLTDDEVEQMINEA-DL---DGDGQVNYDEFVK 144 (150)
Q Consensus 98 ~g~i~~~ef~~~l~-----~~~~~~~~~~~~~~~~~~-d~---~~~g~i~~~eF~~ 144 (150)
...++..++.++|. ..|.+++++++..+...+ .. ..+..|++.+|.+
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 44677888887765 347788888887776643 22 2457899999975
No 276
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=25.97 E-value=2.4e+02 Score=22.72 Aligned_cols=56 Identities=20% Similarity=0.458 Sum_probs=35.6
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 031903 50 QDMINEVDSDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINL 113 (150)
Q Consensus 50 ~~~~~~~d~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 113 (150)
..+|+.....+...+..+.|..++ ..+..+.++..++...++.|+.+.|+.....+
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~--------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFM--------GDEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcC--------CHHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 345555555444455555555554 44567777777776566669999988876544
No 277
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=25.64 E-value=2.9e+02 Score=20.76 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHH---HhhcCCCCCceeHHHHHHH
Q 031903 24 GDGCITVEELATVIRSLDQNPTEEELQDMI---NEVDSDRNGTIEFGEFLNL 72 (150)
Q Consensus 24 ~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~---~~~d~~~~~~v~~~ef~~~ 72 (150)
.+|++... +..+...++. ...+++..++ ..+++-|-|-=++.|.+..
T Consensus 122 d~GYl~~~-le~~~~~l~~-~~~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~l 171 (444)
T COG1508 122 DEGYLTES-LEEIAELLGS-VDEEEVEKVLARIQSLDPAGVGARDLRECLLL 171 (444)
T ss_pred cCCCcccC-HHHHHHhccc-ccHHHHHHHHHHHhcCCCCccccCcHHHHHHH
Confidence 45555544 3333333322 3444444433 3334444444444444333
No 278
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.23 E-value=3e+02 Score=20.69 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhcCCCCcceeHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 031903 10 IVEFKEAFCLFDKDGDGCITVEELATVIRS-LDQNPTEEELQDMINEVDSDRNGTIEFGEFLNLMA 74 (150)
Q Consensus 10 ~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~~~ 74 (150)
.+.++.+-+.+|.+.+|.|+.++=..+++. +.+.-+...-.+-|. ..+..|+.++....+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH----~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH----GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc----CCccceeHHHHHHHHH
Confidence 466788889999999999999988888765 333322222222221 2355677777665554
No 279
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=25.02 E-value=1.3e+02 Score=21.51 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHhhc--CCCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCC
Q 031903 41 DQNPTEEELQDMINEVD--SDRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLT 118 (150)
Q Consensus 41 ~~~~~~~~~~~~~~~~d--~~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~ 118 (150)
......+++..+...+. .|...-+-=++|-..+.. +.+.....-+.-+-+.+-..-+|.+=..|+.+-++..
T Consensus 35 d~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~-l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~----- 108 (357)
T PLN02508 35 NKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADK-IQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT----- 108 (357)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhccchhh-CCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC-----
Confidence 45567788888888874 444445555666554433 2211111112223334455667888777777655432
Q ss_pred HHHHHHHHHhcCCCCCc
Q 031903 119 DDEVEQMINEADLDGDG 135 (150)
Q Consensus 119 ~~~~~~~~~~~d~~~~g 135 (150)
...+.++|..+.+|...
T Consensus 109 nP~lae~F~lMaRDEAR 125 (357)
T PLN02508 109 NPVVAEIFTLMSRDEAR 125 (357)
T ss_pred ChHHHHHHHHhCchhHH
Confidence 24678888888877643
No 280
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=24.69 E-value=95 Score=15.91 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=12.1
Q ss_pred CCCCcceeHHHHHHHH
Q 031903 131 LDGDGQVNYDEFVKMM 146 (150)
Q Consensus 131 ~~~~g~i~~~eF~~~l 146 (150)
.|.+|++|--.|++++
T Consensus 5 TN~dGrLSTT~~iQff 20 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFF 20 (60)
T ss_pred cCCCCcEehHHHHHHH
Confidence 4668888888887765
No 281
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=24.64 E-value=95 Score=17.38 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=18.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC
Q 031903 98 NGYISATELRHVMINLGEKLTDDEVEQMINEADLDGD 134 (150)
Q Consensus 98 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 134 (150)
.|.|+.+|-.+ .+ .++++++......++..+.
T Consensus 47 ~Glis~~EA~~---rY--~Ls~eEf~~W~~av~rhge 78 (90)
T PF06627_consen 47 GGLISVEEACR---RY--GLSEEEFESWQRAVDRHGE 78 (90)
T ss_dssp CTTS-HHHHHH---CT--TSSHHHHHHHHHHCCT--T
T ss_pred cCCCCHHHHHH---Hh--CCCHHHHHHHHHHHHHHhH
Confidence 46676665443 32 2777888877777766554
No 282
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=24.61 E-value=79 Score=13.78 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=12.0
Q ss_pred cccHHHHHHHHHHhCCCC
Q 031903 100 YISATELRHVMINLGEKL 117 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~ 117 (150)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456777777777776443
No 283
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.75 E-value=1.3e+02 Score=15.98 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.8
Q ss_pred hHHHHHHHhhhh
Q 031903 82 AEEELKEAFKVF 93 (150)
Q Consensus 82 ~~~~~~~~f~~~ 93 (150)
..+.+.++|...
T Consensus 15 s~eTLEkv~e~~ 26 (71)
T PRK10391 15 SLESLEKLFDHL 26 (71)
T ss_pred cHHHHHHHHHHh
Confidence 334555555444
No 284
>PTZ00315 2'-phosphotransferase; Provisional
Probab=23.73 E-value=2.2e+02 Score=22.26 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 031903 94 DKDQNGYISATELRHVMINLGEKLTDDEVEQMINEADL 131 (150)
Q Consensus 94 D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (150)
..+.+|++..+++.+.....+..++.+.+..+...-|+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 34678999999999988766667888888888776543
No 285
>PRK10788 periplasmic folding chaperone; Provisional
Probab=23.58 E-value=3.5e+02 Score=21.16 Aligned_cols=50 Identities=22% Similarity=0.461 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCCCcceeHHHHHHHHHhcC
Q 031903 101 ISATELRHVMINLGEKLTDDEVEQMINEAD-LDGDGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 101 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~eF~~~l~~~~ 150 (150)
|+..=+.+.....|..++++++...+...- -..+|.++.+.|.++|...|
T Consensus 96 I~~~Ll~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g 146 (623)
T PRK10788 96 IDEALLDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQMG 146 (623)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHcC
Confidence 333344445566678888888877766532 12457777777777776544
No 286
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.56 E-value=3.2e+02 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=14.0
Q ss_pred CCCCCcccHHHHHHHHHHh
Q 031903 95 KDQNGYISATELRHVMINL 113 (150)
Q Consensus 95 ~~~~g~i~~~ef~~~l~~~ 113 (150)
..+.+.++.+|+.++++.+
T Consensus 370 ~~~~~~ls~~ei~~lfk~a 388 (467)
T KOG2623|consen 370 KAGLSGLSLSEILQLFKDA 388 (467)
T ss_pred ccccccCCHHHHHHHHhcC
Confidence 4567788888888888744
No 287
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=23.51 E-value=72 Score=17.44 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.7
Q ss_pred CCcccHHHHHHHH
Q 031903 98 NGYISATELRHVM 110 (150)
Q Consensus 98 ~g~i~~~ef~~~l 110 (150)
.|.|+.+.|...+
T Consensus 33 ~~~~tVealV~aL 45 (81)
T cd07357 33 SGHISVDALVMAL 45 (81)
T ss_pred cCCCCHHHHHHHH
Confidence 3444444444443
No 288
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.24 E-value=1.8e+02 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHc
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSL 40 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~ 40 (150)
|++.+-..+..+|+..|.++--.|+.++++.+++.+
T Consensus 122 LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 122 LNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred cchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 566677788999999999999999999999998765
No 289
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=23.09 E-value=3.1e+02 Score=20.11 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=47.6
Q ss_pred hhhhcCCCCcceeHHHHHHHHHHcCCCC-------CHHH----HHHHHHhhcCCCCCceeHHHHHHHHH--HHcccCChH
Q 031903 17 FCLFDKDGDGCITVEELATVIRSLDQNP-------TEEE----LQDMINEVDSDRNGTIEFGEFLNLMA--KKMKETDAE 83 (150)
Q Consensus 17 F~~~d~~~~g~l~~~~~~~~l~~~~~~~-------~~~~----~~~~~~~~d~~~~~~v~~~ef~~~~~--~~~~~~~~~ 83 (150)
|..+|.+....++.++-..++...|+.. +..+ +..+...++..+...|-+.+=-.... .......+-
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 4445556688999999999988887543 3333 44555556554433343321100000 111122233
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 031903 84 EELKEAFKVFDKDQNGYISATELRHVMIN 112 (150)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 112 (150)
.+++.+|+.+---+.+++.-.=++..+..
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~ 271 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQS 271 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHH
Confidence 45555665553344445444444444433
No 290
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.90 E-value=2.1e+02 Score=18.20 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCC
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQN 43 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~ 43 (150)
++++-..++..+|..+-.+ ++-+..+++..++..+..+
T Consensus 8 i~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 8 IPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred CChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCC
Confidence 5556666777888777543 5568899999999887754
No 291
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.84 E-value=1.7e+02 Score=16.92 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=21.3
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031903 27 CITVEELATVIRSLDQNPTEEELQDMINEV 56 (150)
Q Consensus 27 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 56 (150)
.+|.+++...++.-+..++...+.+....+
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 788888888888777777777766666555
No 292
>PHA00003 B internal scaffolding protein
Probab=22.74 E-value=1e+02 Score=17.85 Aligned_cols=34 Identities=12% Similarity=0.351 Sum_probs=20.4
Q ss_pred HHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 031903 38 RSLDQNPTEEELQDMINEVDSDRNGTIEFGEFLNL 72 (150)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~ef~~~ 72 (150)
+.+|.....+...+++..||.+ +-.|...||.++
T Consensus 76 RrFGgAtcddksa~iya~FD~~-d~rVQpaEFYRF 109 (120)
T PHA00003 76 RRFGGATCDDKSAKIYAQFDPN-DRRVQPAEFYRF 109 (120)
T ss_pred HHcCCCCcchHHHHHhcccCcc-cceechhHheec
Confidence 4566555556666667677654 455666666554
No 293
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=22.73 E-value=1.4e+02 Score=19.23 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 94 DKDQNGYISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 94 D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
...++|++..+++.+.-+--+.+.+-+++..+.+.-|
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 4556777777777766554455555566666555443
No 294
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=22.54 E-value=39 Score=18.41 Aligned_cols=8 Identities=25% Similarity=0.966 Sum_probs=3.2
Q ss_pred eHHHHHHH
Q 031903 138 NYDEFVKM 145 (150)
Q Consensus 138 ~~~eF~~~ 145 (150)
+|++|.+.
T Consensus 23 ~f~ef~~l 30 (80)
T cd06403 23 KFEDFYKL 30 (80)
T ss_pred CHHHHHHH
Confidence 34444333
No 295
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.44 E-value=2.5e+02 Score=18.76 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCccCCHHHHHHHHHHhhhhcCCCCcceeHHHHH-HH-HHHcCCCCCHHHHHHHHHhhc
Q 031903 1 MSEVLTNEQIVEFKEAFCLFDKDGDGCITVEELA-TV-IRSLDQNPTEEELQDMINEVD 57 (150)
Q Consensus 1 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~d 57 (150)
|+|-+++.|++-++++...+-...+..+-...+. .. ++.-+..+.+..++.+...+-
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~ 147 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFI 147 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5778899999988888877755533333333332 22 233346777778877776653
No 296
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.33 E-value=2.4e+02 Score=18.46 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031903 88 EAFKVFDKDQNGYISATELRHVMINLGEKLTDDEVEQMINEA 129 (150)
Q Consensus 88 ~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 129 (150)
-+-..|..|+.|.|+...+..+.+- .+.++.+...+..+
T Consensus 123 lV~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI 161 (195)
T PF11363_consen 123 LVNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAI 161 (195)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHH
Confidence 3445567778888888877776653 24445555555444
No 297
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.12 E-value=82 Score=24.84 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHH---------HHHHHHhhcCCCC------------------
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEE---------LQDMINEVDSDRN------------------ 61 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~d~~~~------------------ 61 (150)
+...-..++...|.+-++.+++.+|..+...++..+...+ ...++..+|.+++
T Consensus 435 ~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~ 514 (975)
T KOG2419|consen 435 EECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPF 514 (975)
T ss_pred hhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccc
Confidence 3344456677788888899998888887776654332222 3345666666665
Q ss_pred -----CceeHHHHHHHHH
Q 031903 62 -----GTIEFGEFLNLMA 74 (150)
Q Consensus 62 -----~~v~~~ef~~~~~ 74 (150)
|.++.++.+.++.
T Consensus 515 ~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 515 LKKSFGVVTVDELVALLA 532 (975)
T ss_pred cccccCeeEHHHHHHHHH
Confidence 7777777776665
No 298
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.85 E-value=2e+02 Score=17.47 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=17.0
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031903 26 GCITVEELATVIRSLDQNPTEEELQDMINEV 56 (150)
Q Consensus 26 g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 56 (150)
+.+|.+++...++.-+..++...+.+.+..+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 4566666666665555555555555444444
No 299
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=21.83 E-value=1.8e+02 Score=16.92 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQMINEAD 130 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 130 (150)
.||.+++..++...|..+.+..+..+.+.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999998888888887763
No 300
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=21.78 E-value=1.8e+02 Score=16.94 Aligned_cols=12 Identities=17% Similarity=0.590 Sum_probs=5.1
Q ss_pred CHHHHHHHHHhh
Q 031903 45 TEEELQDMINEV 56 (150)
Q Consensus 45 ~~~~~~~~~~~~ 56 (150)
+.++...+...+
T Consensus 48 ~~e~a~elve~L 59 (112)
T PRK14981 48 DPEDAEELVEEL 59 (112)
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 301
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=21.75 E-value=89 Score=13.34 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=5.2
Q ss_pred CCcccHHHHHH
Q 031903 98 NGYISATELRH 108 (150)
Q Consensus 98 ~g~i~~~ef~~ 108 (150)
.|.||.+||.+
T Consensus 14 ~G~IseeEy~~ 24 (31)
T PF09851_consen 14 KGEISEEEYEQ 24 (31)
T ss_pred cCCCCHHHHHH
Confidence 34455555443
No 302
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.74 E-value=94 Score=13.64 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=10.5
Q ss_pred cccHHHHHHHHHHhCCC
Q 031903 100 YISATELRHVMINLGEK 116 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~ 116 (150)
.++..|++..++..|.+
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 35666777777776643
No 303
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=21.65 E-value=1e+02 Score=16.84 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=11.1
Q ss_pred CcceeHHHHHHHHHhcC
Q 031903 134 DGQVNYDEFVKMMMTIG 150 (150)
Q Consensus 134 ~g~i~~~eF~~~l~~~~ 150 (150)
-...+|++|+..+..+|
T Consensus 50 fPk~~F~d~i~~vE~LG 66 (83)
T PF07962_consen 50 FPKASFEDFIERVEKLG 66 (83)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 34567777777766654
No 304
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=21.46 E-value=73 Score=17.30 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=6.6
Q ss_pred CCCCceeHHHHHHHHH
Q 031903 59 DRNGTIEFGEFLNLMA 74 (150)
Q Consensus 59 ~~~~~v~~~ef~~~~~ 74 (150)
+..+.++..+-...+.
T Consensus 49 n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 49 NPNKYLTKTDARKLIK 64 (86)
T ss_dssp HTTS---HHHHHHHTT
T ss_pred CCCCcccHHHHHHHcc
Confidence 3455566666544443
No 305
>PF13730 HTH_36: Helix-turn-helix domain
Probab=21.44 E-value=1.2e+02 Score=14.55 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031903 3 EVLTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV 56 (150)
Q Consensus 3 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 56 (150)
+.|++.+..-+..+....+.++.-+.+.+.+...+ ..+...+.+..+.+
T Consensus 1 ~~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~-----g~s~~Tv~~~i~~L 49 (55)
T PF13730_consen 1 KNLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL-----GVSRRTVQRAIKEL 49 (55)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH-----CcCHHHHHHHHHHH
Confidence 35788888888888888866655555666666544 34466666555544
No 306
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=21.37 E-value=1e+02 Score=21.21 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHhhhh--cCCCCcceeHHHHHHHH
Q 031903 4 VLTNEQIVEFKEAFCLF--DKDGDGCITVEELATVI 37 (150)
Q Consensus 4 ~l~~~~~~~~~~~F~~~--d~~~~g~l~~~~~~~~l 37 (150)
.|+++|..+|......- +.. .|.++.+++..-+
T Consensus 208 tL~~~E~~~W~~~~~~rL~~~~-~~~~tl~~~~~~i 242 (269)
T PF08411_consen 208 TLSEEEQQRWQEYCQQRLTDPD-GGWLTLEEYFQEI 242 (269)
T ss_dssp G--HHHHHHHHHHHHHHS-HHH------HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHH
Confidence 44555555544433221 222 4445555444443
No 307
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=21.31 E-value=1.3e+02 Score=15.14 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeH
Q 031903 5 LTNEQIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEVDSDRNGTIEF 66 (150)
Q Consensus 5 l~~~~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~v~~ 66 (150)
|++....-++.+|.... ..+.++..++.+.+ ..+.+.+..+++.+.. .|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHHH--CCCEEe
Confidence 45556666777887775 67789988888876 4667777777777643 345543
No 308
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.25 E-value=1.4e+02 Score=15.29 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 031903 87 KEAFKVFDKDQNGYISATELRHVMINLGE 115 (150)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~ef~~~l~~~~~ 115 (150)
..+++.++.+...-++.+|..+-.+.+|.
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 44555555445555677777777777764
No 309
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.04 E-value=1.4e+02 Score=15.27 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHHhhc
Q 031903 42 QNPTEEELQDMINEVD 57 (150)
Q Consensus 42 ~~~~~~~~~~~~~~~d 57 (150)
.+++.+++..++..+-
T Consensus 13 ~~Ls~~e~~~~~~~i~ 28 (66)
T PF02885_consen 13 EDLSREEAKAAFDAIL 28 (66)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5566666666666654
No 310
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=1.8e+02 Score=16.49 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031903 100 YISATELRHVMINLGEKLTDDEVEQMINE 128 (150)
Q Consensus 100 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 128 (150)
.|+.+++.++.+-.-..+++++...+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 46777777777666666777665554443
No 311
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=20.86 E-value=3.3e+02 Score=19.61 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCCcceeHHHHHHHHHHcCCCC----------CHHHHHHHHHhhcC
Q 031903 22 KDGDGCITVEELATVIRSLDQNP----------TEEELQDMINEVDS 58 (150)
Q Consensus 22 ~~~~g~l~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~d~ 58 (150)
.+..+.++..+-..++..++.+. ...++..++.....
T Consensus 136 ~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~ 182 (342)
T cd07894 136 KNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDK 182 (342)
T ss_pred cCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHH
Confidence 34456788888888888776432 12455666655543
No 312
>PF14647 FAM91_N: FAM91 N-terminus
Probab=20.79 E-value=2.7e+02 Score=19.75 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCCceeHHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 031903 59 DRNGTIEFGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMI 111 (150)
Q Consensus 59 ~~~~~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 111 (150)
..+..|...-.-.++.........+.-+.++|-.+| ...|..|+-++|.
T Consensus 223 ~~~D~i~VppLegFVmNR~~gDy~E~LLYkifvsid----e~ttv~eLa~~Lq 271 (308)
T PF14647_consen 223 SDDDYISVPPLEGFVMNRVSGDYFETLLYKIFVSID----ERTTVAELAQILQ 271 (308)
T ss_pred CCCCEEeccCchhhcccCCcccHHHHHHHHHheeec----ccccHHHHHHHHh
Confidence 334445444444444444444445556777887775 4467788888775
No 313
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.78 E-value=1.7e+02 Score=17.10 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=6.9
Q ss_pred CCCcccHHHHHHHHH
Q 031903 97 QNGYISATELRHVMI 111 (150)
Q Consensus 97 ~~g~i~~~ef~~~l~ 111 (150)
..|.|+......+++
T Consensus 82 r~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 82 REGKIPLSVPLTLLK 96 (117)
T ss_pred HcCCccHHHHHHHHH
Confidence 444444444444443
No 314
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.71 E-value=40 Score=18.56 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=15.3
Q ss_pred CHHHHHHHHHhcCCCCCcceeH
Q 031903 118 TDDEVEQMINEADLDGDGQVNY 139 (150)
Q Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~ 139 (150)
|+.++...++.+..|++..+..
T Consensus 57 S~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 57 SQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CHHHHHHHHHHHHhcCcccEEE
Confidence 4667777777777777765543
No 315
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.51 E-value=1.7e+02 Score=16.19 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHhhcCCCCCcee---HHHHHHHHHHHcccCChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC
Q 031903 43 NPTEEELQDMINEVDSDRNGTIE---FGEFLNLMAKKMKETDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEK 116 (150)
Q Consensus 43 ~~~~~~~~~~~~~~d~~~~~~v~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~ 116 (150)
.++..-+..+.+.- +-..|+ +++....+... ..+.++.+-......+--.|+.+|+..+++..|.+
T Consensus 13 gi~k~~I~RLarr~---GvkRIS~d~y~e~~~~l~~~-----l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRG---GVKRISGGVYDEVRNVLKSY-----LEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHc---CcchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 35555555555443 233444 55555554433 22334444444445566679999999999888754
No 316
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=20.34 E-value=59 Score=20.84 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhcCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHccc-----
Q 031903 9 QIVEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMINEV----DSDRNGTIEFGEFLNLMAKKMKE----- 79 (150)
Q Consensus 9 ~~~~~~~~F~~~d~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~v~~~ef~~~~~~~~~~----- 79 (150)
....++++|.-+|+..--.++.+++..+++.-+.-.+...+..+.... +.. ...-+|.+|+.-+....+.
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~~~l~i~-~e~gsF~~ylw~f~~~~~i~~~~~ 125 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNARAILKIQ-EEFGSFSDYLWSFVNGKPIVNHWR 125 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHHHHHHHH-HTTS-HHHHHHHCTTTS-EE---S
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHhcCCCcCcccccc
Confidence 345788999999998888899999999988777767777766554332 111 1224677776654332110
Q ss_pred -----CChHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 031903 80 -----TDAEEELKEAFKVFDKDQNGYISATELRHVMINLG 114 (150)
Q Consensus 80 -----~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~ 114 (150)
+.....-..+-+.+-+.|-.+|..-....+|.+.|
T Consensus 126 ~~~~~p~~t~~s~~isk~lkk~GF~FvGpt~vysflqA~G 165 (179)
T PF03352_consen 126 SPEDVPASTPLSEAISKDLKKRGFKFVGPTTVYSFLQAIG 165 (179)
T ss_dssp SGGGS-S--HHHHHHHHHHHHTT--S--HHHHHHHHHHTT
T ss_pred ccccCcCccHHHHHHHHHHHhCcceeECHHHHHHHHHHhC
Confidence 01112223333333333444555555666666655
Done!