Query 031904
Match_columns 150
No_of_seqs 199 out of 1169
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.5 2.1E-14 4.6E-19 111.6 4.5 62 77-143 3-66 (173)
2 COG3897 Predicted methyltransf 98.6 2.3E-08 5E-13 80.8 2.5 52 93-148 54-105 (218)
3 KOG2920 Predicted methyltransf 98.5 7.1E-08 1.5E-12 81.2 4.2 50 95-145 90-139 (282)
4 KOG2793 Putative N2,N2-dimethy 98.1 6.1E-06 1.3E-10 68.5 5.4 54 93-146 50-110 (248)
5 COG2263 Predicted RNA methylas 98.0 3.4E-06 7.3E-11 67.8 1.8 30 119-148 42-71 (198)
6 PF06325 PrmA: Ribosomal prote 97.8 3.8E-05 8.1E-10 65.1 6.1 59 78-147 128-186 (295)
7 PF05175 MTS: Methyltransferas 97.7 0.00014 2.9E-09 56.0 6.4 54 80-146 2-55 (170)
8 COG2264 PrmA Ribosomal protein 97.6 0.00014 3E-09 62.0 5.8 59 78-147 129-187 (300)
9 KOG1499 Protein arginine N-met 97.3 0.00016 3.5E-09 62.6 2.8 31 117-147 55-85 (346)
10 COG4123 Predicted O-methyltran 97.3 0.00045 9.7E-09 57.5 4.9 54 76-145 14-67 (248)
11 KOG3201 Uncharacterized conser 97.2 6.3E-05 1.4E-09 59.8 -0.2 48 95-146 5-54 (201)
12 TIGR00406 prmA ribosomal prote 96.9 0.0024 5.2E-08 53.2 6.4 45 96-146 139-183 (288)
13 TIGR00478 tly hemolysin TlyA f 96.7 0.0028 6.1E-08 51.9 4.7 45 98-146 55-99 (228)
14 KOG2497 Predicted methyltransf 96.7 0.00035 7.6E-09 58.5 -0.7 63 78-144 50-112 (262)
15 TIGR00138 gidB 16S rRNA methyl 96.6 0.0028 6.1E-08 49.6 4.0 26 121-146 41-66 (181)
16 PRK00517 prmA ribosomal protei 96.5 0.0029 6.2E-08 51.5 4.0 58 78-146 86-143 (250)
17 PRK15001 SAM-dependent 23S rib 96.4 0.011 2.4E-07 51.8 7.0 64 70-146 189-252 (378)
18 TIGR00452 methyltransferase, p 96.4 0.0047 1E-07 52.7 4.6 43 99-146 103-145 (314)
19 COG2813 RsmC 16S RNA G1207 met 96.4 0.0037 8E-08 53.4 3.7 56 77-146 126-182 (300)
20 PRK00107 gidB 16S rRNA methylt 96.3 0.0056 1.2E-07 48.4 4.1 24 122-145 45-68 (187)
21 PRK15068 tRNA mo(5)U34 methylt 96.3 0.0068 1.5E-07 51.6 4.8 44 98-146 103-146 (322)
22 PRK14967 putative methyltransf 96.1 0.0074 1.6E-07 48.1 4.2 38 103-145 22-59 (223)
23 PRK08287 cobalt-precorrin-6Y C 96.0 0.007 1.5E-07 46.7 3.2 25 121-145 30-54 (187)
24 KOG3420 Predicted RNA methylas 95.9 0.0057 1.2E-07 48.1 2.4 28 119-146 45-72 (185)
25 TIGR00080 pimt protein-L-isoas 95.8 0.017 3.8E-07 45.7 4.8 27 120-146 75-101 (215)
26 PRK14968 putative methyltransf 95.7 0.015 3.2E-07 44.0 4.1 38 100-145 9-46 (188)
27 PF13489 Methyltransf_23: Meth 95.7 0.02 4.4E-07 41.7 4.6 27 120-146 20-46 (161)
28 TIGR02469 CbiT precorrin-6Y C5 95.6 0.028 6E-07 39.3 5.0 25 121-145 18-42 (124)
29 PRK00274 ksgA 16S ribosomal RN 95.6 0.016 3.5E-07 47.9 4.3 27 121-147 41-67 (272)
30 PRK01683 trans-aconitate 2-met 95.6 0.024 5.3E-07 45.6 5.0 25 121-145 30-54 (258)
31 COG2227 UbiG 2-polyprenyl-3-me 95.5 0.01 2.2E-07 49.3 2.7 30 120-149 57-86 (243)
32 PRK00312 pcm protein-L-isoaspa 95.5 0.023 5E-07 44.7 4.4 40 102-145 62-101 (212)
33 KOG1270 Methyltransferases [Co 95.4 0.0091 2E-07 50.5 2.1 29 120-148 87-115 (282)
34 PRK11207 tellurite resistance 95.4 0.014 3E-07 45.9 3.0 26 121-146 29-54 (197)
35 PLN02396 hexaprenyldihydroxybe 95.4 0.012 2.7E-07 50.3 2.9 27 121-147 130-156 (322)
36 TIGR00095 RNA methyltransferas 95.4 0.015 3.3E-07 45.8 3.2 27 120-146 47-73 (189)
37 KOG1500 Protein arginine N-met 95.4 0.014 3E-07 51.5 3.1 30 117-146 172-201 (517)
38 TIGR00477 tehB tellurite resis 95.3 0.017 3.6E-07 45.4 3.0 27 121-147 29-55 (195)
39 PRK14896 ksgA 16S ribosomal RN 95.0 0.031 6.7E-07 45.8 4.1 27 120-146 27-53 (258)
40 TIGR02143 trmA_only tRNA (urac 95.0 0.08 1.7E-06 45.6 6.8 24 123-146 198-221 (353)
41 PRK04266 fibrillarin; Provisio 95.0 0.034 7.4E-07 45.2 4.3 25 121-145 71-95 (226)
42 PRK12335 tellurite resistance 95.0 0.02 4.3E-07 47.5 2.9 28 121-148 119-146 (287)
43 PRK07402 precorrin-6B methylas 95.0 0.025 5.4E-07 44.1 3.2 25 121-145 39-63 (196)
44 TIGR02072 BioC biotin biosynth 95.0 0.044 9.5E-07 42.6 4.6 26 121-146 33-58 (240)
45 TIGR01983 UbiG ubiquinone bios 94.9 0.042 9.1E-07 43.0 4.4 46 100-145 23-68 (224)
46 PRK07580 Mg-protoporphyrin IX 94.7 0.028 6.1E-07 44.1 3.0 27 120-146 61-87 (230)
47 PRK13942 protein-L-isoaspartat 94.6 0.056 1.2E-06 43.0 4.5 39 102-144 60-98 (212)
48 PF02527 GidB: rRNA small subu 94.6 0.027 5.8E-07 44.7 2.7 24 123-146 49-72 (184)
49 PRK00121 trmB tRNA (guanine-N( 94.6 0.032 6.9E-07 44.1 3.1 25 122-146 40-64 (202)
50 TIGR00755 ksgA dimethyladenosi 94.6 0.052 1.1E-06 44.2 4.4 27 121-147 28-54 (253)
51 TIGR02021 BchM-ChlM magnesium 94.6 0.031 6.7E-07 44.1 3.0 26 120-145 53-78 (219)
52 PRK10909 rsmD 16S rRNA m(2)G96 94.6 0.032 6.9E-07 44.6 3.1 22 121-142 52-73 (199)
53 PRK14103 trans-aconitate 2-met 94.6 0.067 1.4E-06 43.3 5.0 25 121-145 28-52 (255)
54 PRK11036 putative S-adenosyl-L 94.5 0.031 6.7E-07 45.3 2.8 27 122-148 44-70 (255)
55 COG0357 GidB Predicted S-adeno 94.5 0.029 6.3E-07 45.8 2.6 24 123-146 68-91 (215)
56 PRK00377 cbiT cobalt-precorrin 94.5 0.038 8.1E-07 43.2 3.1 24 120-143 38-61 (198)
57 PRK11188 rrmJ 23S rRNA methylt 94.4 0.071 1.5E-06 42.5 4.7 25 120-144 49-73 (209)
58 PRK13944 protein-L-isoaspartat 94.4 0.075 1.6E-06 42.0 4.8 24 121-144 71-94 (205)
59 TIGR03587 Pse_Me-ase pseudamin 94.4 0.067 1.4E-06 42.6 4.4 23 121-143 42-64 (204)
60 TIGR00438 rrmJ cell division p 94.3 0.039 8.5E-07 42.6 3.0 26 119-144 29-54 (188)
61 COG4976 Predicted methyltransf 94.3 0.02 4.4E-07 48.0 1.3 20 124-143 127-146 (287)
62 TIGR03534 RF_mod_PrmC protein- 94.3 0.065 1.4E-06 42.5 4.2 42 99-145 69-110 (251)
63 PRK10258 biotin biosynthesis p 94.2 0.04 8.7E-07 44.2 2.8 24 122-145 42-65 (251)
64 PRK09489 rsmC 16S ribosomal RN 94.2 0.063 1.4E-06 46.2 4.1 23 123-145 197-219 (342)
65 PLN02585 magnesium protoporphy 94.2 0.043 9.3E-07 46.9 3.1 27 120-146 142-168 (315)
66 PRK05134 bifunctional 3-demeth 94.2 0.09 2E-06 41.6 4.7 35 106-144 36-70 (233)
67 PRK03522 rumB 23S rRNA methylu 93.9 0.061 1.3E-06 45.3 3.5 27 121-147 172-198 (315)
68 TIGR02752 MenG_heptapren 2-hep 93.7 0.057 1.2E-06 42.6 2.9 23 121-143 44-66 (231)
69 COG2890 HemK Methylase of poly 93.7 0.037 8.1E-07 46.3 1.9 22 125-146 113-134 (280)
70 PF08003 Methyltransf_9: Prote 93.7 0.091 2E-06 45.3 4.1 29 120-148 113-141 (315)
71 PRK13168 rumA 23S rRNA m(5)U19 93.6 0.1 2.2E-06 46.1 4.5 41 103-147 282-322 (443)
72 PF02353 CMAS: Mycolic acid cy 93.5 0.11 2.3E-06 43.5 4.2 38 102-143 46-83 (273)
73 COG2230 Cfa Cyclopropane fatty 93.5 0.06 1.3E-06 45.7 2.8 26 119-144 69-94 (283)
74 PLN02672 methionine S-methyltr 93.5 0.08 1.7E-06 52.2 3.9 42 101-145 100-141 (1082)
75 PRK09328 N5-glutamine S-adenos 93.3 0.12 2.7E-06 41.7 4.2 40 102-145 92-131 (275)
76 PRK11873 arsM arsenite S-adeno 93.2 0.075 1.6E-06 43.2 2.9 23 121-143 76-98 (272)
77 PRK06202 hypothetical protein; 93.2 0.076 1.6E-06 42.3 2.8 23 121-143 59-81 (232)
78 PRK05031 tRNA (uracil-5-)-meth 93.1 0.33 7.2E-06 41.9 6.7 41 102-147 191-231 (362)
79 PRK15451 tRNA cmo(5)U34 methyl 93.0 0.092 2E-06 42.6 3.1 22 121-142 55-76 (247)
80 COG2518 Pcm Protein-L-isoaspar 93.0 0.12 2.7E-06 42.0 3.8 30 119-148 69-98 (209)
81 PLN02781 Probable caffeoyl-CoA 92.9 0.09 1.9E-06 42.7 2.9 25 120-144 66-90 (234)
82 TIGR03533 L3_gln_methyl protei 92.9 0.085 1.8E-06 44.0 2.8 23 123-145 122-144 (284)
83 TIGR02085 meth_trns_rumB 23S r 92.9 0.082 1.8E-06 45.8 2.7 26 121-146 232-257 (374)
84 TIGR00740 methyltransferase, p 92.8 0.11 2.4E-06 41.5 3.2 24 121-144 52-75 (239)
85 PRK00216 ubiE ubiquinone/menaq 92.8 0.11 2.3E-06 40.6 3.0 24 122-145 51-74 (239)
86 TIGR03704 PrmC_rel_meth putati 92.7 0.092 2E-06 43.1 2.7 23 123-145 87-109 (251)
87 TIGR03840 TMPT_Se_Te thiopurin 92.7 0.17 3.7E-06 40.7 4.1 48 97-149 11-61 (213)
88 PTZ00338 dimethyladenosine tra 92.6 0.15 3.3E-06 43.1 3.9 28 120-147 34-61 (294)
89 PRK05785 hypothetical protein; 92.5 0.11 2.4E-06 41.9 2.8 22 122-143 51-72 (226)
90 PRK13255 thiopurine S-methyltr 92.5 0.19 4.2E-06 40.5 4.2 43 102-149 22-64 (218)
91 PRK13943 protein-L-isoaspartat 92.4 0.21 4.6E-06 42.8 4.6 25 121-145 79-103 (322)
92 PF03848 TehB: Tellurite resis 92.4 0.12 2.5E-06 41.5 2.8 30 120-149 28-57 (192)
93 PLN02244 tocopherol O-methyltr 92.3 0.13 2.7E-06 44.0 3.1 23 121-143 117-139 (340)
94 PF01135 PCMT: Protein-L-isoas 92.2 0.21 4.5E-06 40.3 4.1 27 120-146 70-96 (209)
95 PLN02336 phosphoethanolamine N 92.1 0.12 2.7E-06 45.5 2.9 26 121-146 36-61 (475)
96 PRK11783 rlmL 23S rRNA m(2)G24 92.0 0.13 2.8E-06 48.2 3.1 26 121-146 537-562 (702)
97 TIGR00536 hemK_fam HemK family 92.0 0.11 2.5E-06 43.0 2.4 22 124-145 116-137 (284)
98 PRK11705 cyclopropane fatty ac 91.8 0.28 6.2E-06 42.8 4.8 23 121-143 166-188 (383)
99 PLN02233 ubiquinone biosynthes 91.7 0.16 3.4E-06 41.8 2.9 23 121-143 72-94 (261)
100 PF01596 Methyltransf_3: O-met 91.6 0.27 5.8E-06 39.5 4.1 40 102-145 29-68 (205)
101 PF05185 PRMT5: PRMT5 arginine 91.5 0.28 6E-06 43.9 4.4 24 121-144 185-208 (448)
102 PRK15128 23S rRNA m(5)C1962 me 91.4 0.18 3.8E-06 44.4 3.1 25 121-145 219-243 (396)
103 PHA03412 putative methyltransf 91.4 0.1 2.2E-06 43.4 1.5 23 122-144 49-71 (241)
104 PRK14966 unknown domain/N5-glu 91.4 0.28 6E-06 43.9 4.3 37 103-145 238-274 (423)
105 TIGR01934 MenG_MenH_UbiE ubiqu 91.3 0.2 4.4E-06 38.6 3.0 24 122-145 39-62 (223)
106 PHA03411 putative methyltransf 91.3 0.16 3.5E-06 43.1 2.6 22 123-144 65-86 (279)
107 PTZ00098 phosphoethanolamine N 91.0 0.22 4.7E-06 41.0 3.1 23 120-142 50-72 (263)
108 TIGR00479 rumA 23S rRNA (uraci 90.9 0.19 4.1E-06 44.0 2.7 26 122-147 292-317 (431)
109 COG2242 CobL Precorrin-6B meth 90.8 0.25 5.4E-06 39.7 3.2 29 120-148 32-60 (187)
110 PRK11088 rrmA 23S rRNA methylt 90.8 0.37 8E-06 39.5 4.3 24 122-145 85-108 (272)
111 TIGR03438 probable methyltrans 90.8 0.19 4.2E-06 42.1 2.6 23 122-144 63-85 (301)
112 PRK01544 bifunctional N5-gluta 90.6 0.2 4.2E-06 45.4 2.7 24 122-145 138-161 (506)
113 PRK11805 N5-glutamine S-adenos 90.6 0.19 4.2E-06 42.5 2.5 22 124-145 135-156 (307)
114 TIGR02716 C20_methyl_CrtF C-20 90.5 0.23 5.1E-06 41.2 2.9 25 122-146 149-173 (306)
115 COG3963 Phospholipid N-methylt 90.5 0.3 6.6E-06 39.2 3.3 42 93-139 24-65 (194)
116 PF01209 Ubie_methyltran: ubiE 90.3 0.27 5.8E-06 40.1 3.0 24 121-144 46-69 (233)
117 TIGR01177 conserved hypothetic 90.0 0.41 8.8E-06 40.5 4.0 40 104-147 168-207 (329)
118 PLN02490 MPBQ/MSBQ methyltrans 89.7 0.31 6.8E-06 42.2 3.1 23 122-144 113-135 (340)
119 PLN02476 O-methyltransferase 89.5 0.35 7.5E-06 40.9 3.1 25 121-145 117-141 (278)
120 PLN02336 phosphoethanolamine N 89.4 0.63 1.4E-05 41.0 4.8 22 122-143 266-287 (475)
121 PF13679 Methyltransf_32: Meth 89.3 0.58 1.3E-05 34.8 3.9 23 120-142 23-45 (141)
122 PRK14121 tRNA (guanine-N(7)-)- 89.3 0.35 7.7E-06 42.7 3.1 25 122-146 122-146 (390)
123 PRK10901 16S rRNA methyltransf 88.8 0.55 1.2E-05 41.3 4.0 25 121-145 243-267 (427)
124 PRK04457 spermidine synthase; 88.5 0.42 9E-06 39.5 2.9 25 122-146 66-90 (262)
125 COG4076 Predicted RNA methylas 88.1 0.31 6.7E-06 40.0 1.8 28 122-149 32-59 (252)
126 PRK06922 hypothetical protein; 88.1 0.48 1E-05 44.7 3.3 25 121-145 417-441 (677)
127 COG2226 UbiE Methylase involve 87.8 0.5 1.1E-05 39.1 2.9 24 122-145 51-74 (238)
128 PRK11727 23S rRNA mA1618 methy 87.3 0.69 1.5E-05 39.8 3.6 20 122-141 114-133 (321)
129 KOG3191 Predicted N6-DNA-methy 86.6 0.94 2E-05 36.8 3.8 40 103-143 25-64 (209)
130 PTZ00146 fibrillarin; Provisio 86.2 0.63 1.4E-05 39.7 2.7 47 96-144 106-154 (293)
131 PRK14904 16S rRNA methyltransf 86.1 1.4 3E-05 39.0 4.9 41 97-144 232-272 (445)
132 PF06080 DUF938: Protein of un 84.9 0.94 2E-05 36.8 3.0 22 125-146 28-49 (204)
133 TIGR00563 rsmB ribosomal RNA s 84.3 1.4 2.9E-05 38.8 4.0 24 122-145 238-261 (426)
134 PF05958 tRNA_U5-meth_tr: tRNA 83.9 2.7 5.8E-05 36.2 5.6 63 75-148 160-222 (352)
135 PHA01634 hypothetical protein 83.8 1 2.3E-05 34.8 2.7 30 118-147 24-53 (156)
136 PF05219 DREV: DREV methyltran 83.2 2 4.3E-05 36.3 4.4 30 120-149 92-121 (265)
137 PF00398 RrnaAD: Ribosomal RNA 83.1 0.96 2.1E-05 37.1 2.4 40 103-146 15-54 (262)
138 KOG2904 Predicted methyltransf 83.0 1.7 3.7E-05 37.4 4.0 47 98-146 126-172 (328)
139 PRK14902 16S rRNA methyltransf 82.4 1.6 3.5E-05 38.4 3.8 24 121-144 249-272 (444)
140 PLN02589 caffeoyl-CoA O-methyl 81.2 1.3 2.9E-05 36.6 2.6 26 120-145 77-102 (247)
141 PF09243 Rsm22: Mitochondrial 80.9 2.3 4.9E-05 35.4 3.9 27 119-145 30-56 (274)
142 KOG1541 Predicted protein carb 80.8 0.98 2.1E-05 37.9 1.7 23 122-144 50-72 (270)
143 TIGR00446 nop2p NOL1/NOP2/sun 80.0 1.7 3.7E-05 35.7 2.9 23 122-144 71-93 (264)
144 PRK04338 N(2),N(2)-dimethylgua 79.8 1.4 2.9E-05 38.7 2.4 23 123-145 58-80 (382)
145 KOG1501 Arginine N-methyltrans 79.4 1.4 3E-05 40.4 2.3 22 125-146 69-90 (636)
146 COG4122 Predicted O-methyltran 79.4 1.8 3.9E-05 35.4 2.8 25 121-145 58-82 (219)
147 PLN03075 nicotianamine synthas 79.4 3.6 7.7E-05 35.2 4.7 49 97-146 99-149 (296)
148 COG0030 KsgA Dimethyladenosine 79.3 1.8 3.9E-05 36.3 2.8 29 121-149 29-57 (259)
149 PRK14901 16S rRNA methyltransf 77.7 3 6.5E-05 36.7 3.9 24 121-144 251-274 (434)
150 PRK00811 spermidine synthase; 77.1 2.3 4.9E-05 35.5 2.8 22 122-143 76-97 (283)
151 PF08704 GCD14: tRNA methyltra 76.8 3.8 8.3E-05 34.0 4.1 27 119-145 37-64 (247)
152 smart00138 MeTrc Methyltransfe 75.7 3.7 8E-05 33.9 3.7 24 122-145 99-126 (264)
153 TIGR00417 speE spermidine synt 74.7 2.9 6.4E-05 34.4 2.9 22 122-143 72-93 (270)
154 KOG4300 Predicted methyltransf 74.4 1.6 3.6E-05 36.2 1.3 11 125-135 79-89 (252)
155 PF03602 Cons_hypoth95: Conser 73.5 2.6 5.7E-05 33.0 2.2 26 121-146 41-66 (183)
156 KOG2899 Predicted methyltransf 73.0 3.1 6.8E-05 35.3 2.6 29 119-147 55-83 (288)
157 PRK13256 thiopurine S-methyltr 72.4 6.9 0.00015 32.0 4.5 43 102-149 28-70 (226)
158 KOG2361 Predicted methyltransf 72.4 2.3 5E-05 35.8 1.7 12 125-136 74-85 (264)
159 KOG1271 Methyltransferases [Ge 72.3 4.2 9.1E-05 33.3 3.1 44 92-136 35-81 (227)
160 COG2519 GCD14 tRNA(1-methylade 71.2 5.8 0.00013 33.4 3.8 27 119-145 91-118 (256)
161 PF05401 NodS: Nodulation prot 70.5 2.6 5.7E-05 34.2 1.6 21 124-144 45-65 (201)
162 PF00891 Methyltransf_2: O-met 68.2 12 0.00027 29.6 5.1 25 122-146 100-124 (241)
163 PRK14903 16S rRNA methyltransf 67.1 5.6 0.00012 35.2 3.1 24 121-144 236-259 (431)
164 PRK03612 spermidine synthase; 66.8 5.7 0.00012 36.0 3.1 23 122-144 297-319 (521)
165 COG1189 Predicted rRNA methyla 65.5 13 0.00028 31.1 4.8 42 101-146 62-103 (245)
166 KOG3010 Methyltransferase [Gen 65.4 4.4 9.5E-05 34.1 2.0 26 124-149 35-60 (261)
167 PF07757 AdoMet_MTase: Predict 63.6 10 0.00022 28.2 3.4 21 124-144 60-80 (112)
168 PF01728 FtsJ: FtsJ-like methy 63.0 12 0.00025 28.4 3.8 40 102-144 5-45 (181)
169 PRK11760 putative 23S rRNA C24 62.0 15 0.00032 32.4 4.7 31 119-149 208-238 (357)
170 KOG1661 Protein-L-isoaspartate 61.0 6.7 0.00015 32.6 2.2 27 119-145 79-105 (237)
171 PF03291 Pox_MCEL: mRNA cappin 60.9 6.1 0.00013 34.0 2.1 31 100-134 44-74 (331)
172 KOG0820 Ribosomal RNA adenine 60.3 14 0.0003 31.9 4.1 49 96-149 37-85 (315)
173 COG4106 Tam Trans-aconitate me 56.6 9 0.0002 32.1 2.3 22 121-142 29-50 (257)
174 PF05724 TPMT: Thiopurine S-me 56.4 9.8 0.00021 30.7 2.5 41 103-148 23-63 (218)
175 PRK01581 speE spermidine synth 56.1 9.2 0.0002 33.8 2.4 23 121-143 149-171 (374)
176 PLN02366 spermidine synthase 56.0 11 0.00024 32.1 2.8 22 122-143 91-112 (308)
177 PLN02668 indole-3-acetate carb 55.4 8.2 0.00018 34.2 2.0 19 123-141 64-82 (386)
178 TIGR02987 met_A_Alw26 type II 53.0 18 0.00039 32.5 3.8 23 122-144 31-53 (524)
179 KOG2187 tRNA uracil-5-methyltr 47.1 23 0.0005 32.8 3.5 42 102-147 367-408 (534)
180 PF08123 DOT1: Histone methyla 46.5 20 0.00043 28.8 2.8 44 93-144 21-64 (205)
181 TIGR03439 methyl_EasF probable 44.7 14 0.00031 31.7 1.8 22 122-143 76-98 (319)
182 PF02475 Met_10: Met-10+ like- 43.0 18 0.00039 29.0 2.0 26 120-145 99-124 (200)
183 COG0742 N6-adenine-specific me 42.7 29 0.00062 27.8 3.1 27 120-146 41-67 (187)
184 COG1565 Uncharacterized conser 42.2 33 0.00072 30.4 3.7 32 105-137 61-92 (370)
185 TIGR00308 TRM1 tRNA(guanine-26 41.0 20 0.00043 31.4 2.1 21 123-143 45-65 (374)
186 COG0220 Predicted S-adenosylme 40.7 29 0.00063 28.3 3.0 23 124-146 50-72 (227)
187 COG0500 SmtA SAM-dependent met 40.5 26 0.00056 22.6 2.2 12 126-137 52-63 (257)
188 PF11968 DUF3321: Putative met 39.6 31 0.00068 28.4 3.0 32 101-132 30-61 (219)
189 KOG1663 O-methyltransferase [S 35.0 37 0.0008 28.3 2.7 39 104-146 59-97 (237)
190 PRK01544 bifunctional N5-gluta 32.3 45 0.00098 30.2 3.1 25 122-146 347-371 (506)
191 KOG0024 Sorbitol dehydrogenase 31.8 36 0.00078 29.9 2.2 26 121-146 168-195 (354)
192 COG2265 TrmA SAM-dependent met 30.0 67 0.0014 28.8 3.7 27 121-147 292-318 (432)
193 PLN02823 spermine synthase 25.9 66 0.0014 27.8 2.9 22 122-143 103-124 (336)
194 cd05191 NAD_bind_amino_acid_DH 24.3 2E+02 0.0044 19.0 4.6 28 106-133 6-33 (86)
195 KOG3987 Uncharacterized conser 23.6 29 0.00062 29.2 0.2 26 123-148 113-138 (288)
196 KOG2915 tRNA(1-methyladenosine 23.5 72 0.0016 27.6 2.6 25 120-144 103-127 (314)
197 COG0293 FtsJ 23S rRNA methylas 23.1 1.6E+02 0.0035 23.9 4.5 28 119-146 42-69 (205)
198 PF08515 TGF_beta_GS: Transfor 22.7 52 0.0011 18.8 1.1 10 130-139 14-23 (29)
199 cd01080 NAD_bind_m-THF_DH_Cycl 21.1 92 0.002 24.1 2.6 23 119-142 40-62 (168)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.49 E-value=2.1e-14 Score=111.61 Aligned_cols=62 Identities=31% Similarity=0.530 Sum_probs=34.4
Q ss_pred CceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhc--CccccCCCeEEEeCCCCChhHHHHhhc
Q 031904 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS--GMLLLHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 77 g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~--~~~~~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
+.+|.|+|+.. ..||.++|+++++|++||.+.... .+..+++++|||||||||++||++|++
T Consensus 3 ~~~l~i~e~~~-----~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 3 NKTLQIEEDWG-----DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp -------------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT
T ss_pred ccccccccccc-----cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc
Confidence 45678888753 458999999999999999985311 256789999999999999999999999
No 2
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2.3e-08 Score=80.80 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=47.4
Q ss_pred CccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 93 g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
...++..|.+.+.||+|+..+ |..++||+|||+|+|.||++|++++.|..++
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~----PetVrgkrVLd~gagsgLvaIAaa~aGA~~v 105 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDH----PETVRGKRVLDLGAGSGLVAIAAARAGAAEV 105 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcC----ccccccceeeecccccChHHHHHHHhhhHHH
Confidence 447899999999999999984 7899999999999999999999999998754
No 3
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=7.1e-08 Score=81.22 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=44.3
Q ss_pred cceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 95 tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.|+++|.+|..|..++.... .....++||+|||||||+||+||.+..-+.
T Consensus 90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~ 139 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGA 139 (282)
T ss_pred cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhcc
Confidence 48999999999999999764 346789999999999999999999998774
No 4
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=98.07 E-value=6.1e-06 Score=68.52 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=40.6
Q ss_pred CccceeeechHHHHHHHHhhhhhcCc-----cccC--CCeEEEeCCCCChhHHHHhhcCCc
Q 031904 93 GVTGSVMWDSGVVLGKFLEHAVDSGM-----LLLH--GKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 93 g~tG~~vW~asi~La~~L~~~~~~~~-----~~~~--gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
....+++|+++-.++.++.....+.+ ..++ .++|||||+|||++||++|.+...
T Consensus 50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~ 110 (248)
T KOG2793|consen 50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGA 110 (248)
T ss_pred cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcc
Confidence 33678999999999999887643211 1122 457999999999999999995543
No 5
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=3.4e-06 Score=67.83 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=27.9
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
..+.|++|++||||||++||.++.+|++++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V 71 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRV 71 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEE
Confidence 578999999999999999999999999865
No 6
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.83 E-value=3.8e-05 Score=65.11 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=41.8
Q ss_pred ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..+.|.-+|.. . +|.=.-+.+..-.++|.+ ...+|++||++|||+|+++|+|+++|++.
T Consensus 128 ~~~~I~idPg~--A---FGTG~H~TT~lcl~~l~~------~~~~g~~vLDvG~GSGILaiaA~klGA~~ 186 (295)
T PF06325_consen 128 DEIVIEIDPGM--A---FGTGHHPTTRLCLELLEK------YVKPGKRVLDVGCGSGILAIAAAKLGAKK 186 (295)
T ss_dssp TSEEEEESTTS--S---S-SSHCHHHHHHHHHHHH------HSSTTSEEEEES-TTSHHHHHHHHTTBSE
T ss_pred CcEEEEECCCC--c---ccCCCCHHHHHHHHHHHH------hccCCCEEEEeCCcHHHHHHHHHHcCCCe
Confidence 45566666542 2 233334567777778876 36788999999999999999999999874
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.67 E-value=0.00014 Score=55.99 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 80 l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+++++.+...+... +=.++.+|++++... .+++|||||||+|++|+.+++.++.
T Consensus 2 ~~~~~~~gvFs~~~-----~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~ 55 (170)
T PF05175_consen 2 LEFITHPGVFSPPR-----LDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPD 55 (170)
T ss_dssp EEEEEETTSTTTTS-----HHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred EEEEECCCeeCCCC-----CCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCC
Confidence 56677654322111 112566777777762 6789999999999999999998876
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00014 Score=61.99 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=42.2
Q ss_pred ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..+.|+-+|.. .-| ||. -+.+..-.+||.+ ...+|++||++|||+|+++|+++++|+..
T Consensus 129 ~~~~i~lDPGl--AFG-TG~--HpTT~lcL~~Le~------~~~~g~~vlDvGcGSGILaIAa~kLGA~~ 187 (300)
T COG2264 129 DELNIELDPGL--AFG-TGT--HPTTSLCLEALEK------LLKKGKTVLDVGCGSGILAIAAAKLGAKK 187 (300)
T ss_pred CceEEEEcccc--ccC-CCC--ChhHHHHHHHHHH------hhcCCCEEEEecCChhHHHHHHHHcCCce
Confidence 46777777763 122 232 2445555566765 34599999999999999999999999873
No 9
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.29 E-value=0.00016 Score=62.63 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=28.2
Q ss_pred CccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 117 GMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 117 ~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
+..+|++|.||+.|||||++++.+|+.|+++
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~ 85 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARK 85 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcce
Confidence 3568999999999999999999999999774
No 10
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00045 Score=57.48 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=40.3
Q ss_pred cCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 76 ~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-++.+.|.|.+.. +..=--+++|+.|... ...++|||||||+|++||++|.-.+
T Consensus 14 ~~~~~~I~q~~~~--------~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~ 67 (248)
T COG4123 14 TFKQFFIIQDRCG--------FRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTE 67 (248)
T ss_pred cccceEEEeCCCc--------cccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCC
Confidence 3567889998753 3322367888888654 2288999999999999999998643
No 11
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=6.3e-05 Score=59.79 Aligned_cols=48 Identities=31% Similarity=0.516 Sum_probs=41.3
Q ss_pred cce-eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCC-ChhHHHHhhcCCc
Q 031904 95 TGS-VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGPFGCSSYPY 146 (150)
Q Consensus 95 tG~-~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGt-GL~Gi~aa~l~~~ 146 (150)
||. .+||+.-.|+.++.+. +..++|++|||||.|- ||.||..|...|.
T Consensus 5 tgnvciwpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~ 54 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPD 54 (201)
T ss_pred CCcEEecccHHHHHHHHHhc----hhHHhHHHHHHhcCchhhhhhhheeeecCC
Confidence 454 7899999999999985 6789999999999996 9999998876653
No 12
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.93 E-value=0.0024 Score=53.23 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=32.8
Q ss_pred ceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 96 G~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
|.-..+.+....++|.+ ...++++|||+|||+|+.++.++++++.
T Consensus 139 gtG~h~tt~l~l~~l~~------~~~~g~~VLDvGcGsG~lai~aa~~g~~ 183 (288)
T TIGR00406 139 GTGTHPTTSLCLEWLED------LDLKDKNVIDVGCGSGILSIAALKLGAA 183 (288)
T ss_pred cCCCCHHHHHHHHHHHh------hcCCCCEEEEeCCChhHHHHHHHHcCCC
Confidence 33344555555566655 2356899999999999999999988764
No 13
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.67 E-value=0.0028 Score=51.86 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=37.9
Q ss_pred eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.++.++.-|...+... ...+++++|||+|||||.....++..|+.
T Consensus 55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~ 99 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAK 99 (228)
T ss_pred hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCC
Confidence 5578888888888874 45689999999999999999999998654
No 14
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=96.65 E-value=0.00035 Score=58.48 Aligned_cols=63 Identities=25% Similarity=0.173 Sum_probs=51.7
Q ss_pred ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
....|.|..+.....+.||..+|.+++.|..+|.++ +....+++|.|||||+++..++++++.
T Consensus 50 ~~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~----~d~~~~~~v~~l~~gi~~~~~~~a~~~ 112 (262)
T KOG2497|consen 50 GTKVILQSHSLRFLLARTGLSVWESALSLEADLRDK----PDLSSELTVEELGCDIALKHVLAARVP 112 (262)
T ss_pred cCeeeecchHHHHHHHHhccccchHHHHHHHHHhhC----cccccccchHhhccCHHHHHHHHHhcc
Confidence 456677777644456779999999999999999985 556889999999999999987777654
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.57 E-value=0.0028 Score=49.58 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=22.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+++++|||+|||+|..++.++...+.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~ 66 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPE 66 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCC
Confidence 45899999999999999999877654
No 16
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.55 E-value=0.0029 Score=51.55 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=40.3
Q ss_pred ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..+.|..++.. . .|.-..+.+..+.++|... ..++++|||+|||+|+.++.+++.++.
T Consensus 86 ~~~~i~i~p~~--a---fgtg~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~ 143 (250)
T PRK00517 86 DEINIELDPGM--A---FGTGTHPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAK 143 (250)
T ss_pred CeEEEEECCCC--c---cCCCCCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCC
Confidence 34556666542 1 2333366677777777652 357899999999999999999988765
No 17
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.40 E-value=0.011 Score=51.76 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred eEEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 70 ~l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+++.+.+..++|.-.+.-.+..+. =..+ ++|.+.. +. ..+.+|||||||+|++|+.++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~~~L-----D~Gt----rllL~~l---p~-~~~~~VLDLGCGtGvi~i~la~~~P~ 252 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSRTGL-----DIGA----RFFMQHL---PE-NLEGEIVDLGCGNGVIGLTLLDKNPQ 252 (378)
T ss_pred eeEEEEcCceEEEEecCCccCCCCc-----ChHH----HHHHHhC---Cc-ccCCeEEEEeccccHHHHHHHHhCCC
Confidence 3456677788888877653221111 0122 2333321 11 12359999999999999999988764
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.39 E-value=0.0047 Score=52.74 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.1
Q ss_pred eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
-|.+.+....++.+ -..++|++|||+|||+|...+.++..++.
T Consensus 103 e~~s~~~~~~~l~~-----l~~~~g~~VLDvGCG~G~~~~~~~~~g~~ 145 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-----LSPLKGRTILDVGCGSGYHMWRMLGHGAK 145 (314)
T ss_pred HHHHHHHHHHHHHh-----cCCCCCCEEEEeccCCcHHHHHHHHcCCC
Confidence 46666665555554 23578999999999999998888877764
No 19
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0037 Score=53.37 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=36.2
Q ss_pred CceEEEEecCCCCCC-CCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 77 GHSLSILQSPSSLGT-PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 77 g~~l~I~Q~~ss~~~-~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+..++++-.+.-.+. .=+.| ++.|.++. +....+ +||+||||.|++|+.+++..|.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l---~~~~~~-~vlDlGCG~Gvlg~~la~~~p~ 182 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKG----------SRLLLETL---PPDLGG-KVLDLGCGYGVLGLVLAKKSPQ 182 (300)
T ss_pred cCceEEEeCCCCCcCCCcChH----------HHHHHHhC---CccCCC-cEEEeCCCccHHHHHHHHhCCC
Confidence 677788777652211 11122 23455532 233444 9999999999999999999873
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.26 E-value=0.0056 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++++|||+|||+|..++.++...+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~ 68 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP 68 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC
Confidence 389999999999999999887544
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.26 E-value=0.0068 Score=51.57 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=31.2
Q ss_pred eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.-|++-+.....+.. -..++|++|||+|||+|...+.++..++.
T Consensus 103 ~ew~s~~k~~~l~~~-----l~~l~g~~VLDIGCG~G~~~~~la~~g~~ 146 (322)
T PRK15068 103 TEWRSDWKWDRVLPH-----LSPLKGRTVLDVGCGNGYHMWRMLGAGAK 146 (322)
T ss_pred ceehHHhHHHHHHHh-----hCCCCCCEEEEeccCCcHHHHHHHHcCCC
Confidence 456665543333322 12468999999999999999988888765
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=96.14 E-value=0.0074 Score=48.10 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+..|++++... ...++.+|||+|||+|..++.++..+.
T Consensus 22 s~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~ 59 (223)
T PRK14967 22 TQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGA 59 (223)
T ss_pred HHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCC
Confidence 45677777652 234578999999999999999988754
No 23
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.96 E-value=0.007 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=22.0
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.++.+|||+|||+|..++.+++..+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~ 54 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP 54 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC
Confidence 3678999999999999999988765
No 24
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.0057 Score=48.10 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.5
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..+.||++++||||||.+++.++..++.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e 72 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNE 72 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCc
Confidence 4699999999999999999888777664
No 25
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.76 E-value=0.017 Score=45.72 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=22.9
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++.+|||+|||+|..++.++...+.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~ 101 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGR 101 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCC
Confidence 346789999999999999999887654
No 26
>PRK14968 putative methyltransferase; Provisional
Probab=95.72 E-value=0.015 Score=43.98 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=28.2
Q ss_pred echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
|+-+.+|.+++.. .++++|||+|||+|..++.++..+.
T Consensus 9 ~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~ 46 (188)
T PRK14968 9 AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGK 46 (188)
T ss_pred chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcc
Confidence 4555566665542 4678999999999999998887643
No 27
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.68 E-value=0.02 Score=41.75 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.5
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++++|||+|||+|.....++..+..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~ 46 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE 46 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE
Confidence 567889999999999988888776653
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.64 E-value=0.028 Score=39.35 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.++++|||||||+|...+.++...+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~ 42 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP 42 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 3578999999999999998887654
No 29
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.63 E-value=0.016 Score=47.88 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.++.+|||+|||+|..+..++..++..
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v 67 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKV 67 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcE
Confidence 467899999999999999998876643
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.56 E-value=0.024 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=20.6
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.++++|||+|||+|...+.++...+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~ 54 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP 54 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC
Confidence 3578999999999999988876543
No 31
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.54 E-value=0.01 Score=49.34 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.8
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
.+.|++||+.|||-|+++.-+|++|..+.+
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga~Vtg 86 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGASVTG 86 (243)
T ss_pred CCCCCeEEEecCCccHhhHHHHHCCCeeEE
Confidence 489999999999999999999999976643
No 32
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.45 E-value=0.023 Score=44.69 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++..+..++... ...-++.+|||+|||+|..+..++.+..
T Consensus 62 ~~p~~~~~l~~~----l~~~~~~~VLeiG~GsG~~t~~la~~~~ 101 (212)
T PRK00312 62 SQPYMVARMTEL----LELKPGDRVLEIGTGSGYQAAVLAHLVR 101 (212)
T ss_pred CcHHHHHHHHHh----cCCCCCCEEEEECCCccHHHHHHHHHhC
Confidence 444555555542 1234678999999999999888877654
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=95.42 E-value=0.0091 Score=50.46 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=25.0
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
.+-|++|||.|||+||++.=+|++|..+-
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~ 115 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVT 115 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeE
Confidence 35578999999999999999999997653
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.41 E-value=0.014 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.++++|||+|||+|..++.+|..+..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~ 54 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFD 54 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCE
Confidence 46789999999999999999886644
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.41 E-value=0.012 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.8
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
+.+.+|||+|||+|..++.++..+...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V 156 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATV 156 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEE
Confidence 578899999999999999888766443
No 36
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.40 E-value=0.015 Score=45.78 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=24.2
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+.|++||||+||+|.+|+.++.-|++
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~ 73 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAK 73 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCC
Confidence 468999999999999999999988764
No 37
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.36 E-value=0.014 Score=51.49 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=27.3
Q ss_pred CccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 117 GMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 117 ~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+...|++|.||+.|||.|++++++|..|++
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~ 201 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAK 201 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHhCcc
Confidence 346799999999999999999999999976
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.26 E-value=0.017 Score=45.35 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.6
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.++.+|||+|||+|..++.++..+..+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V 55 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDV 55 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeE
Confidence 456799999999999999999876544
No 39
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.03 E-value=0.031 Score=45.82 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.6
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++++|||+|||+|...+.++..+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~ 53 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKK 53 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCE
Confidence 346789999999999999999887543
No 40
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.02 E-value=0.08 Score=45.60 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.2
Q ss_pred CCeEEEeCCCCChhHHHHhhcCCc
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+++||||+||+|..++.++.....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~ 221 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRR 221 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCE
Confidence 447999999999999999876543
No 41
>PRK04266 fibrillarin; Provisional
Probab=95.02 E-value=0.034 Score=45.19 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.5
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-+|.+|||+|||||...+.++...+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~ 95 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE 95 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC
Confidence 4678999999999999999988653
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.98 E-value=0.02 Score=47.51 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=23.2
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
+++++|||+|||+|..++.++..+....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~ 146 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVT 146 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEE
Confidence 4567999999999999999998775443
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.98 E-value=0.025 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.1
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-++.+|||+|||+|..++.++...+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~ 63 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP 63 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 3568999999999999998887654
No 44
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.97 E-value=0.044 Score=42.61 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=21.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..+++|||||||+|.....++..++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~ 58 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQ 58 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCC
Confidence 45689999999999999888887754
No 45
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.90 E-value=0.042 Score=43.00 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=31.4
Q ss_pred echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
|........|+...........++.+|||+|||+|...+.++..+.
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~ 68 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA 68 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence 4445555677776542222235688999999999999888776554
No 46
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.74 E-value=0.028 Score=44.07 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.9
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++.+|||+|||+|.....++..+..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~ 87 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAK 87 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCE
Confidence 356789999999999999888776543
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.65 E-value=0.056 Score=43.04 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
++..+..++.... ..-++.+|||+|||+|.....++.+.
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~ 98 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIV 98 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhc
Confidence 4455555555531 23467899999999999998888764
No 48
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.64 E-value=0.027 Score=44.67 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.8
Q ss_pred CCeEEEeCCCCChhHHHHhhcCCc
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+++++++|+|.|++||.+|.+.|.
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~ 72 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPD 72 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TT
T ss_pred CceEEecCCCCCChhHHHHHhCCC
Confidence 338999999999999999999886
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.64 E-value=0.032 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.1
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+.+|||+|||+|...+.++...+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~ 64 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD 64 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC
Confidence 5679999999999999988876553
No 50
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.63 E-value=0.052 Score=44.17 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.++.+|||+|||+|.....++..++..
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v 54 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKV 54 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcE
Confidence 467899999999999999998877653
No 51
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.62 E-value=0.031 Score=44.10 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.7
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
..++++|||+|||+|.....++..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~ 78 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA 78 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC
Confidence 35689999999999999988887544
No 52
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.62 E-value=0.032 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhh
Q 031904 121 LHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
..+++|||||||+|..|+.++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALS 73 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHH
Confidence 4578999999999999996443
No 53
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.59 E-value=0.067 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=21.1
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
..+.+|||+|||+|.....++...|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p 52 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP 52 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC
Confidence 4678999999999999988887644
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.52 E-value=0.031 Score=45.34 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=22.6
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
++.+|||+|||+|...+.++..+....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~ 70 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVI 70 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEE
Confidence 467999999999999999988775543
No 55
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.48 E-value=0.029 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.8
Q ss_pred CCeEEEeCCCCChhHHHHhhcCCc
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+++++++|||.|++||.+|.+.|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~ 91 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD 91 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC
Confidence 799999999999999999977664
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.47 E-value=0.038 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
..++.+|||+|||+|..++.+++.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~ 61 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLL 61 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHH
Confidence 457889999999999999998875
No 57
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.44 E-value=0.071 Score=42.51 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.6
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..++.+|||||||||.....++...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~ 73 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQI 73 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHc
Confidence 4567899999999999988777654
No 58
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.42 E-value=0.075 Score=41.97 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
-.+.+|||+|||+|..+..++.+.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~ 94 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAI 94 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhc
Confidence 356899999999999998888754
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.38 E-value=0.067 Score=42.58 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=19.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
.++.+|||+|||+|.....++..
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~ 64 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRL 64 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHh
Confidence 46779999999999999888765
No 60
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.35 E-value=0.039 Score=42.64 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.2
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..-+|++|||+|||+|...+.++...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~ 54 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQV 54 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHh
Confidence 44678999999999999888777654
No 61
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.31 E-value=0.02 Score=47.98 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=16.9
Q ss_pred CeEEEeCCCCChhHHHHhhc
Q 031904 124 KKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l 143 (150)
+++|+|||||||.|..+-.+
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~ 146 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM 146 (287)
T ss_pred ceeeecccCcCcccHhHHHH
Confidence 79999999999999876443
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=94.27 E-value=0.065 Score=42.45 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=29.9
Q ss_pred eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-++.+..+.+++.+.. .-.+++|||+|||+|..++.++...+
T Consensus 69 p~~~~~~l~~~~l~~~-----~~~~~~ilDig~G~G~~~~~l~~~~~ 110 (251)
T TIGR03534 69 PRPDTEELVEAALERL-----KKGPLRVLDLGTGSGAIALALAKERP 110 (251)
T ss_pred CCCChHHHHHHHHHhc-----ccCCCeEEEEeCcHhHHHHHHHHHCC
Confidence 3455666666666532 12456999999999999999988654
No 63
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=94.20 E-value=0.04 Score=44.24 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++++|||+|||+|.....++..+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~ 65 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS 65 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC
Confidence 467999999999988777766543
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.17 E-value=0.063 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.3
Q ss_pred CCeEEEeCCCCChhHHHHhhcCC
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
..+|||||||+|..++.++...|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p 219 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP 219 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC
Confidence 34799999999999999998876
No 65
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.17 E-value=0.043 Score=46.86 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++.+|||+|||+|..++.++..+..
T Consensus 142 ~~~~~~VLDlGcGtG~~a~~la~~g~~ 168 (315)
T PLN02585 142 SLAGVTVCDAGCGTGSLAIPLALEGAI 168 (315)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence 356889999999999999999987644
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.15 E-value=0.09 Score=41.58 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 106 La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..+|+.... ...++++|||+|||+|..++.++..+
T Consensus 36 ~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~ 70 (233)
T PRK05134 36 RLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLG 70 (233)
T ss_pred HHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcC
Confidence 345665532 24578999999999999988887654
No 67
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.91 E-value=0.061 Score=45.29 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.6
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.++++|||||||+|..++.+|..+...
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V 198 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQL 198 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEE
Confidence 357899999999999999999866433
No 68
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.75 E-value=0.057 Score=42.61 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=19.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
.++++|||+|||+|..++.++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~ 66 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEA 66 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHH
Confidence 35789999999999999888764
No 69
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.037 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEeCCCCChhHHHHhhcCCc
Q 031904 125 KIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 125 ~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+|||||||+|..+|.+++-.+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~ 134 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD 134 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC
Confidence 8999999999999999998873
No 70
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=93.66 E-value=0.091 Score=45.26 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=26.0
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
.++||+|||+|||-|--+.-++.-|++.+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~V 141 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSV 141 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEE
Confidence 68999999999999999999998888753
No 71
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=93.64 E-value=0.1 Score=46.10 Aligned_cols=41 Identities=10% Similarity=-0.110 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
+-.|.+++.... ...++.+|||||||+|..++.+|..+...
T Consensus 282 ~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~~~V 322 (443)
T PRK13168 282 NQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQAAEV 322 (443)
T ss_pred HHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhCCEE
Confidence 344555555431 12456899999999999999998876443
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=93.53 E-value=0.11 Score=43.50 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=24.5
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
|-....+++... ..+-.|.+|||+|||.|-+.+.+|.-
T Consensus 46 AQ~~k~~~~~~~----~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 46 AQERKLDLLCEK----LGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp HHHHHHHHHHTT----TT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 333444455543 24557899999999999999998875
No 73
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.52 E-value=0.06 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.9
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+-.|++|||+|||.|-+.+-+|...
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 34578999999999999999999875
No 74
>PLN02672 methionine S-methyltransferase
Probab=93.50 E-value=0.08 Score=52.16 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=31.2
Q ss_pred chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+-+..|.+.|... ....+++++|||||||+|..+|.++...+
T Consensus 100 peTE~lve~L~~~---~~~~~~~~~VLDlG~GSG~Iai~La~~~~ 141 (1082)
T PLN02672 100 DWSFTFYEGLNRH---PDSIFRDKTVAELGCGNGWISIAIAEKWL 141 (1082)
T ss_pred hhHHHHHHHHHhc---ccccCCCCEEEEEecchHHHHHHHHHHCC
Confidence 3456677775442 12346788999999999999999998765
No 75
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.27 E-value=0.12 Score=41.67 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-+-.|.+++... ....++.+|||+|||+|..++.++...+
T Consensus 92 ~te~l~~~~~~~----~~~~~~~~vLDiG~GsG~~~~~la~~~~ 131 (275)
T PRK09328 92 ETEELVEWALEA----LLLKEPLRVLDLGTGSGAIALALAKERP 131 (275)
T ss_pred CcHHHHHHHHHh----ccccCCCEEEEEcCcHHHHHHHHHHHCC
Confidence 344556655532 1234567999999999999999988764
No 76
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.23 E-value=0.075 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
-.|++|||+|||+|+..+.++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~ 98 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARR 98 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHH
Confidence 46889999999999988876654
No 77
>PRK06202 hypothetical protein; Provisional
Probab=93.20 E-value=0.076 Score=42.31 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=18.5
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
.++.+|||||||+|.....++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~ 81 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARW 81 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHH
Confidence 35679999999999988777653
No 78
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=93.07 E-value=0.33 Score=41.89 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.+-.|.+++.... ...+.+||||+||+|..++.++......
T Consensus 191 ~~e~l~~~v~~~~-----~~~~~~vLDl~~G~G~~sl~la~~~~~v 231 (362)
T PRK05031 191 VNEKMLEWALDAT-----KGSKGDLLELYCGNGNFTLALARNFRRV 231 (362)
T ss_pred HHHHHHHHHHHHh-----hcCCCeEEEEeccccHHHHHHHhhCCEE
Confidence 3445555555421 1123579999999999999888765543
No 79
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.05 E-value=0.092 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhh
Q 031904 121 LHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
..+.+|||+|||+|...+.++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHH
Confidence 3678999999999998887766
No 80
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.12 Score=42.05 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.5
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
..-.+.+|||+|||+|-..-++|.+..+++
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~ 98 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVV 98 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEE
Confidence 345679999999999999999999887654
No 81
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.91 E-value=0.09 Score=42.69 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.5
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..+.++|||+|||||..++.++...
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhC
Confidence 3567899999999999888777643
No 82
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=92.91 E-value=0.085 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred CCeEEEeCCCCChhHHHHhhcCC
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+++|||+|||+|..++.++...+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~ 144 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP 144 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC
Confidence 47899999999999999998765
No 83
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=92.87 E-value=0.082 Score=45.78 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=21.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..+++|||||||+|..++.+|..+..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~ 257 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQ 257 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCe
Confidence 45689999999999999999876543
No 84
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.77 E-value=0.11 Score=41.51 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..+.+|||+|||+|...+.++...
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~ 75 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNI 75 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhc
Confidence 367799999999999988877653
No 85
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.76 E-value=0.11 Score=40.59 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+.+|||+|||+|...+.++..++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~ 74 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG 74 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC
Confidence 568999999999999998888764
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.73 E-value=0.092 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.6
Q ss_pred CCeEEEeCCCCChhHHHHhhcCC
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+.+|||||||+|..++.++...+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~ 109 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD 109 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC
Confidence 45899999999999999887654
No 87
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.67 E-value=0.17 Score=40.66 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=34.8
Q ss_pred eeeec---hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 97 SVMWD---SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 97 ~~vW~---asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
...|+ ....|.+|+... ..-++.+||++|||.|--.+.+|..|..+.|
T Consensus 11 ~~~w~~~~p~~~l~~~~~~l-----~~~~~~rvLd~GCG~G~da~~LA~~G~~V~g 61 (213)
T TIGR03840 11 QIGFHQSEVNPLLVKHWPAL-----GLPAGARVFVPLCGKSLDLAWLAEQGHRVLG 61 (213)
T ss_pred CCCCccCCCCHHHHHHHHhh-----CCCCCCeEEEeCCCchhHHHHHHhCCCeEEE
Confidence 34664 456777776641 1126679999999999999999998876654
No 88
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.60 E-value=0.15 Score=43.07 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.5
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..++.+|||+|||+|.+...++..+.+.
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V 61 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKV 61 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcE
Confidence 3467899999999999998887765543
No 89
>PRK05785 hypothetical protein; Provisional
Probab=92.52 E-value=0.11 Score=41.86 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.9
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
.+.+|||||||||.....++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHh
Confidence 3679999999999998887765
No 90
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=92.51 E-value=0.19 Score=40.49 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
....|.+|+... ..-++.+||++|||.|--.+.+|..|-.+.|
T Consensus 22 p~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~a 64 (218)
T PRK13255 22 VNPLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLG 64 (218)
T ss_pred CCHHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEE
Confidence 345566666541 1235679999999999999999998876654
No 91
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.43 E-value=0.21 Score=42.82 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.4
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
-++.+|||+|||+|..++.++...+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~ 103 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVG 103 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcC
Confidence 4678999999999999998887654
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.35 E-value=0.12 Score=41.48 Aligned_cols=30 Identities=30% Similarity=0.210 Sum_probs=23.7
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
.+++.++|+||||.|--++.+|..|-.+.|
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtA 57 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTA 57 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEE
Confidence 467889999999999999999999977654
No 93
>PLN02244 tocopherol O-methyltransferase
Probab=92.30 E-value=0.13 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
-++++|||+|||+|...+.++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~ 139 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK 139 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh
Confidence 46789999999999999888774
No 94
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=92.24 E-value=0.21 Score=40.27 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.-+|.+|||+|||+|-..-++|.+..+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~ 96 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGP 96 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHST
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCc
Confidence 457889999999999999999887543
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.12 E-value=0.12 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.++++|||||||+|..+..++..+..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~ 61 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQ 61 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCE
Confidence 35689999999999999998876544
No 96
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.02 E-value=0.13 Score=48.21 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=23.1
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+|++|||||||||..++.++..|..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~ 562 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAK 562 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCC
Confidence 46899999999999999999987654
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=91.99 E-value=0.11 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.0
Q ss_pred CeEEEeCCCCChhHHHHhhcCC
Q 031904 124 KKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++|||||||+|..++.++...+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~ 137 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP 137 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC
Confidence 6899999999999999998765
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.82 E-value=0.28 Score=42.76 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=19.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
-+|.+|||+|||+|...+.++..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH
Confidence 46789999999999999888764
No 99
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.68 E-value=0.16 Score=41.76 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.2
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
.++.+|||+|||+|...+.++..
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~ 94 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEK 94 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHH
Confidence 35789999999999988877764
No 100
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=91.63 E-value=0.27 Score=39.51 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+..-+++|..- -...+.|+|||+|++||..+|.+|...|
T Consensus 29 i~~~~g~lL~~l----~~~~~~k~vLEIGt~~GySal~la~~l~ 68 (205)
T PF01596_consen 29 ISPETGQLLQML----VRLTRPKRVLEIGTFTGYSALWLAEALP 68 (205)
T ss_dssp HHHHHHHHHHHH----HHHHT-SEEEEESTTTSHHHHHHHHTST
T ss_pred cCHHHHHHHHHH----HHhcCCceEEEeccccccHHHHHHHhhc
Confidence 455555555542 1246779999999999999999997654
No 101
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=91.48 E-value=0.28 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=19.5
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+++.|+++|||+|++.+.+++.+
T Consensus 185 ~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 185 SKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp ETT-EEEEES-TTSHHHHHHHHTT
T ss_pred ccceEEEEeCCCccHHHHHHHHHH
Confidence 367899999999999999988876
No 102
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.44 E-value=0.18 Score=44.39 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=20.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+|++|||||||||-.+|.++.-+.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga 243 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGC 243 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCC
Confidence 4689999999999999988776443
No 103
>PHA03412 putative methyltransferase; Provisional
Probab=91.42 E-value=0.1 Score=43.40 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+.+|||+|||+|.+++.++...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~ 71 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMM 71 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhc
Confidence 36799999999999999988753
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=91.37 E-value=0.28 Score=43.86 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+-.+.+++... ..++.+|||||||+|..++.++...+
T Consensus 238 TE~LVe~aL~~------l~~~~rVLDLGcGSG~IaiaLA~~~p 274 (423)
T PRK14966 238 TEHLVEAVLAR------LPENGRVWDLGTGSGAVAVTVALERP 274 (423)
T ss_pred HHHHHHHhhhc------cCCCCEEEEEeChhhHHHHHHHHhCC
Confidence 34556655542 12456999999999999998886543
No 105
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.34 E-value=0.2 Score=38.57 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++++|||+|||+|.....++...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~ 62 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP 62 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC
Confidence 688999999999999888877665
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=91.31 E-value=0.16 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCeEEEeCCCCChhHHHHhhcC
Q 031904 123 GKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
+.+|||||||+|.+++.++...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~ 86 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC 86 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC
Confidence 4689999999999998887653
No 107
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=90.98 E-value=0.22 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=18.9
Q ss_pred ccCCCeEEEeCCCCChhHHHHhh
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
.-++.+|||+|||+|...+.++.
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~ 72 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINE 72 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHh
Confidence 34678999999999998877765
No 108
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=90.87 E-value=0.19 Score=43.99 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=21.9
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
.+.+|||||||+|..++.+|..+.+.
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V 317 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSV 317 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEE
Confidence 45799999999999999999866543
No 109
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=90.82 E-value=0.25 Score=39.65 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=24.7
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
.-+|.+++|.|||||-++|-++.++|...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~ 60 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGR 60 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCce
Confidence 35678999999999999999998888743
No 110
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.81 E-value=0.37 Score=39.50 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=18.9
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+.+|||+|||+|.....++...+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~ 108 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALP 108 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcc
Confidence 447899999999998877765543
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.75 E-value=0.19 Score=42.07 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.5
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
++.+|||||||+|.....++...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh
Confidence 56899999999999877666544
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.63 E-value=0.2 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=19.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++++|||+|||+|..++.++...+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p 161 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP 161 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC
Confidence 356899999999999998876543
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.62 E-value=0.19 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.9
Q ss_pred CeEEEeCCCCChhHHHHhhcCC
Q 031904 124 KKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~~ 145 (150)
++|||+|||+|..++.++...+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p 156 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP 156 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC
Confidence 6899999999999999988765
No 114
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=90.54 E-value=0.23 Score=41.23 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
++++|||+|||+|..++.+++..|.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~ 173 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE 173 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC
Confidence 4579999999999999999887764
No 115
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.45 E-value=0.3 Score=39.17 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=29.5
Q ss_pred CccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHH
Q 031904 93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPF 139 (150)
Q Consensus 93 g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~ 139 (150)
.+.|+.+ ++|-.+|+-+.+.. ..-+|+-|||||.|||+.-=+
T Consensus 24 rtVGaI~-PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~Tka 65 (194)
T COG3963 24 RTVGAIL-PSSSILARKMASVI----DPESGLPVLELGPGTGVITKA 65 (194)
T ss_pred ceeeeec-CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHH
Confidence 4456655 66667777777642 345789999999999987533
No 116
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.35 E-value=0.27 Score=40.08 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=17.2
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+|.+||+||||||.+.+.++...
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~ 69 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV 69 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC
Confidence 457799999999999999887653
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=90.05 E-value=0.41 Score=40.52 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..|+..+... ...-+|++|||.|||+|...+.++..+...
T Consensus 168 ~~la~~~~~l----~~~~~g~~vLDp~cGtG~~lieaa~~~~~v 207 (329)
T TIGR01177 168 PKLARAMVNL----ARVTEGDRVLDPFCGTGGFLIEAGLMGAKV 207 (329)
T ss_pred HHHHHHHHHH----hCCCCcCEEEECCCCCCHHHHHHHHhCCeE
Confidence 3455555542 123457899999999999988887766543
No 118
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=89.73 E-value=0.31 Score=42.17 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.0
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+.+|||||||+|...+.++...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~ 135 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV 135 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC
Confidence 46799999999999888776643
No 119
>PLN02476 O-methyltransferase
Probab=89.47 E-value=0.35 Score=40.87 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.6
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+.|+|||+|+++|..+|.+|...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~ 141 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP 141 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC
Confidence 4679999999999999999987543
No 120
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.38 E-value=0.63 Score=40.98 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=18.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
++.+|||+|||+|..++.++..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~ 287 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN 287 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh
Confidence 5789999999999988877764
No 121
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=89.27 E-value=0.58 Score=34.77 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred ccCCCeEEEeCCCCChhHHHHhh
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
..+..+|+|+|||-|.+|.+++.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35567999999999999999998
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=89.26 E-value=0.35 Score=42.73 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.5
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+..+||+|||+|-..+.+|...|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~ 146 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN 146 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC
Confidence 3579999999999999999987664
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=88.81 E-value=0.55 Score=41.29 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.7
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+|.+|||||||+|..++.++..++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~ 267 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP 267 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC
Confidence 3678999999999999999888765
No 124
>PRK04457 spermidine synthase; Provisional
Probab=88.45 E-value=0.42 Score=39.48 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
++++||+||||+|.....++...|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~ 90 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD 90 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC
Confidence 4689999999999999888776553
No 125
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=88.06 E-value=0.31 Score=40.03 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
....+-+||+|+|+++++||+...++.|
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViA 59 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIA 59 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEE
Confidence 3467889999999999999998777665
No 126
>PRK06922 hypothetical protein; Provisional
Probab=88.06 E-value=0.48 Score=44.69 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+++.+|||+|||+|.....++...|
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P 441 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETE 441 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCC
Confidence 4678999999999998877776544
No 127
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=87.84 E-value=0.5 Score=39.10 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+|.+|||+|||||-..+.++...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g 74 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG 74 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC
Confidence 789999999999999999988664
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=87.33 E-value=0.69 Score=39.79 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=14.8
Q ss_pred CCCeEEEeCCCCChhHHHHh
Q 031904 122 HGKKIVELGSGCGLVGPFGC 141 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa 141 (150)
.+.+|||||||+|.+..+++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCceEEEecCCccHHHHHHH
Confidence 45799999999975554443
No 129
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.65 E-value=0.94 Score=36.82 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
++.|-+-|++.... -.....+-|+|+|||+|+++-++++.
T Consensus 25 TFlLlDaLekd~~e-L~~~~~~i~lEIG~GSGvvstfL~~~ 64 (209)
T KOG3191|consen 25 TFLLLDALEKDAAE-LKGHNPEICLEIGCGSGVVSTFLASV 64 (209)
T ss_pred hhHHHHHHHHHHHH-HhhcCceeEEEecCCcchHHHHHHHh
Confidence 45666666664210 01112567999999999998877764
No 130
>PTZ00146 fibrillarin; Provisional
Probab=86.19 E-value=0.63 Score=39.70 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=30.3
Q ss_pred ceeeech--HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 96 GSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 96 G~~vW~a--si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
-+.+|+- |-+-|-.|.- .. .-..-++.+|||||||+|...+.+|...
T Consensus 106 eyR~w~p~rSKlaa~i~~g-~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGG-VA-NIPIKPGSKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred eeeeeCCcccHHHHHHHCC-cc-eeccCCCCEEEEeCCcCCHHHHHHHHHh
Confidence 4899986 3233333332 10 1123567899999999999888888764
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=86.06 E-value=1.4 Score=38.99 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=28.4
Q ss_pred eeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 97 ~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
..+++.+-.++..+.. ..+|++|||+|||+|-.++.++.+.
T Consensus 232 ~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~ 272 (445)
T PRK14904 232 VSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELM 272 (445)
T ss_pred EEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHh
Confidence 4777655444444443 2467899999999998887777643
No 132
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=84.89 E-value=0.94 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.0
Q ss_pred eEEEeCCCCChhHHHHhhcCCc
Q 031904 125 KIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 125 ~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+|||+|||||--.+..|...|.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~ 49 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH 49 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC
Confidence 7999999999988888877664
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=84.26 E-value=1.4 Score=38.77 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.6
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+|.+|||+|||+|-.++.++.+.+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~ 261 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP 261 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC
Confidence 578999999999999988887654
No 134
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=83.91 E-value=2.7 Score=36.20 Aligned_cols=63 Identities=19% Similarity=0.025 Sum_probs=37.0
Q ss_pred ecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 75 ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 75 ~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
+.+..+.++.++.+.. .+=+.....|-++.... ...++.+||||=||+|..|+.+|..+.++.
T Consensus 160 ~~~~~~~~~~~~~sFf------QvN~~~~~~l~~~~~~~-----l~~~~~~vlDlycG~G~fsl~la~~~~~V~ 222 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFF------QVNPEQNEKLYEQALEW-----LDLSKGDVLDLYCGVGTFSLPLAKKAKKVI 222 (352)
T ss_dssp ECCCTEEEEEETTS---------SBHHHHHHHHHHHHHH-----CTT-TTEEEEES-TTTCCHHHHHCCSSEEE
T ss_pred eeccceEEEECCCcCc------cCcHHHHHHHHHHHHHH-----hhcCCCcEEEEeecCCHHHHHHHhhCCeEE
Confidence 3444566666554322 23334455555555543 122233799999999999999999877654
No 135
>PHA01634 hypothetical protein
Probab=83.82 E-value=1 Score=34.76 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=26.9
Q ss_pred ccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 118 MLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 118 ~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
...+++|+|+++|+++|=.+|--+..|++.
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~ 53 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASF 53 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccE
Confidence 467999999999999999999999888774
No 136
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=83.20 E-value=2 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.1
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
..+.+++|+||||.|=+-..++.+...++|
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f~~v~a 121 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLFKEVYA 121 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhcceEEe
Confidence 346679999999999998888888877765
No 137
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=83.08 E-value=0.96 Score=37.07 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..-+++-+.+.. ..-++..|||+|+|+|...-.++..+.+
T Consensus 15 ~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~~~ 54 (262)
T PF00398_consen 15 DPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRGKR 54 (262)
T ss_dssp HHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHSSE
T ss_pred CHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhcccCc
Confidence 334555555542 1237899999999999999888776643
No 138
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=83.03 E-value=1.7 Score=37.41 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=31.3
Q ss_pred eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.-|+.- .+.+++..... +...+++..+||||||+|..++.+++-.|.
T Consensus 126 PRpETE-E~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~ 172 (328)
T KOG2904|consen 126 PRPETE-EWVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQ 172 (328)
T ss_pred cCccHH-HHHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence 345443 44455554331 235577779999999999999988876553
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=82.37 E-value=1.6 Score=38.42 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.2
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.++.+|||+|||+|-.++.++...
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~ 272 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELL 272 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh
Confidence 356899999999999998888753
No 140
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=81.16 E-value=1.3 Score=36.61 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.5
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
..+-++|||+|.++|..++.+|...+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 35668999999999999998886543
No 141
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=80.90 E-value=2.3 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=20.3
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
..|+.++||++|||+|....++..+.+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~ 56 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWP 56 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhc
Confidence 358889999999999976665554433
No 142
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=80.80 E-value=0.98 Score=37.85 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
+..-||++|||+||.|=++..-|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G 72 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG 72 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC
Confidence 55689999999999997665544
No 143
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=80.03 E-value=1.7 Score=35.68 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=19.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.|.+|||+|||+|-.++.++.+.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~ 93 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALM 93 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHc
Confidence 57899999999999998877754
No 144
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=79.81 E-value=1.4 Score=38.68 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred CCeEEEeCCCCChhHHHHhhcCC
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
+.+|||++||+|+.||.++...+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~ 80 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG 80 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC
Confidence 46899999999999999987544
No 145
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=79.43 E-value=1.4 Score=40.36 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEeCCCCChhHHHHhhcCCc
Q 031904 125 KIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 125 ~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
-||++|.||||++|.|++.|+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD 90 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD 90 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC
Confidence 6899999999999999998865
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=79.43 E-value=1.8 Score=35.44 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.5
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
...|+|||+|.++|..+|.+|.-.|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~ 82 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP 82 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC
Confidence 4679999999999999999998776
No 147
>PLN03075 nicotianamine synthase; Provisional
Probab=79.40 E-value=3.6 Score=35.16 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=28.3
Q ss_pred eeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCC-ChhHHHHhh-cCCc
Q 031904 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGPFGCS-SYPY 146 (150)
Q Consensus 97 ~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGt-GL~Gi~aa~-l~~~ 146 (150)
+..|+--+.|++.=..-.... .....++|+|+|||. |+.++++++ +.|.
T Consensus 99 Fpy~~nY~~L~~lE~~~L~~~-~~~~p~~VldIGcGpgpltaiilaa~~~p~ 149 (296)
T PLN03075 99 FPYYNNYLKLSKLEFDLLSQH-VNGVPTKVAFVGSGPLPLTSIVLAKHHLPT 149 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHh-hcCCCCEEEEECCCCcHHHHHHHHHhcCCC
Confidence 456666665555422211001 112779999999995 677777663 4443
No 148
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=79.26 E-value=1.8 Score=36.30 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
..+.+|||+|+|.|.+-..++..+.+..|
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~a 57 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTA 57 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEE
Confidence 34789999999999999888888777544
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=77.66 E-value=3 Score=36.74 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=20.2
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+|.+|||+|||+|-.++.++.+.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~ 274 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELM 274 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHh
Confidence 357899999999999998887764
No 150
>PRK00811 spermidine synthase; Provisional
Probab=77.14 E-value=2.3 Score=35.45 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.1
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
+.++||+||||.|....-+.+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC
Confidence 4689999999999888766654
No 151
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=76.83 E-value=3.8 Score=33.96 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=18.7
Q ss_pred cccCCCeEEEeCCCCChhHHHHhh-cCC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCS-SYP 145 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~-l~~ 145 (150)
....|++|||=|.|.|-+.+.++. ++|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p 64 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGP 64 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCC
Confidence 456899999999999999999995 444
No 152
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=75.71 E-value=3.7 Score=33.85 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=17.8
Q ss_pred CCCeEEEeCCCCCh----hHHHHhhcCC
Q 031904 122 HGKKIVELGSGCGL----VGPFGCSSYP 145 (150)
Q Consensus 122 ~gk~VLELGaGtGL----~Gi~aa~l~~ 145 (150)
++.+|+++|||||- ++|.++..++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~ 126 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLP 126 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhh
Confidence 34699999999996 5666665543
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=74.70 E-value=2.9 Score=34.36 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.8
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
+.++||+||||+|.....+.+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~ 93 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKH 93 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhC
Confidence 4579999999998776655544
No 154
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=74.40 E-value=1.6 Score=36.21 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.8
Q ss_pred eEEEeCCCCCh
Q 031904 125 KIVELGSGCGL 135 (150)
Q Consensus 125 ~VLELGaGtGL 135 (150)
.|||+|||||-
T Consensus 79 ~vLEvgcGtG~ 89 (252)
T KOG4300|consen 79 DVLEVGCGTGA 89 (252)
T ss_pred ceEEecccCCC
Confidence 68999999995
No 155
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=73.54 E-value=2.6 Score=33.05 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=19.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
+.|++||||=||+|.+||=|..=|.+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~ 66 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAK 66 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-S
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCC
Confidence 89999999999999999977665544
No 156
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=73.00 E-value=3.1 Score=35.27 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.7
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..+.++.+|++||-+|.+.+..|+....|
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r 83 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPR 83 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccc
Confidence 56889999999999999999998865443
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=72.44 E-value=6.9 Score=32.04 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
....|.+|+... ..-++.+||-.|||.|.-.+.+|..|..+.+
T Consensus 28 pnp~L~~~~~~l-----~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~G 70 (226)
T PRK13256 28 PNEFLVKHFSKL-----NINDSSVCLIPMCGCSIDMLFFLSKGVKVIG 70 (226)
T ss_pred CCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHhCCCcEEE
Confidence 456677776552 1125789999999999999999999887653
No 158
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=72.41 E-value=2.3 Score=35.81 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=10.1
Q ss_pred eEEEeCCCCChh
Q 031904 125 KIVELGSGCGLV 136 (150)
Q Consensus 125 ~VLELGaGtGL~ 136 (150)
+|||+|||.|=.
T Consensus 74 ~ilEvGCGvGNt 85 (264)
T KOG2361|consen 74 TILEVGCGVGNT 85 (264)
T ss_pred hheeeccCCCcc
Confidence 799999998743
No 159
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=72.26 E-value=4.2 Score=33.31 Aligned_cols=44 Identities=20% Similarity=0.476 Sum_probs=25.8
Q ss_pred CCccceeee---chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChh
Q 031904 92 PGVTGSVMW---DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLV 136 (150)
Q Consensus 92 ~g~tG~~vW---~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~ 136 (150)
.|.+| -+| ++--...+||.......+..-.-.+||+||||-|.+
T Consensus 35 hgd~G-EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~ 81 (227)
T KOG1271|consen 35 HGDEG-EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHL 81 (227)
T ss_pred CCCcc-ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHH
Confidence 34444 456 445677889887642101111123999999997654
No 160
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=71.24 E-value=5.8 Score=33.38 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.7
Q ss_pred cccCCCeEEEeCCCCChhHHHHhh-cCC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCS-SYP 145 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~-l~~ 145 (150)
....|.+|||-|.|+|.+.+.+|. +++
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~ 118 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGP 118 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCC
Confidence 356899999999999999999985 544
No 161
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=70.52 E-value=2.6 Score=34.22 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=15.2
Q ss_pred CeEEEeCCCCChhHHHHhhcC
Q 031904 124 KKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~ 144 (150)
.++||+|||+|...-.+|...
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC 65 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC 65 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE
T ss_pred ceeEecCCCccHHHHHHHHhh
Confidence 489999999999887776543
No 162
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=68.20 E-value=12 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..++||++|.|.|..++.+++..|.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~ 124 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPN 124 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTT
T ss_pred CccEEEeccCcchHHHHHHHHHCCC
Confidence 3468999999999999999988776
No 163
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=67.13 E-value=5.6 Score=35.23 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=19.8
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcC
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
-+|.+|||+|||+|--++.++.+.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~ 259 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELM 259 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc
Confidence 357899999999998888777653
No 164
>PRK03612 spermidine synthase; Provisional
Probab=66.79 E-value=5.7 Score=36.04 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.0
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
+.++||++|||+|.....+.+..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~ 319 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP 319 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC
Confidence 56899999999999887776653
No 165
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.51 E-value=13 Score=31.11 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=32.2
Q ss_pred chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.++.-|-..|.+. ...++|++||++||-||=.--++...|++
T Consensus 62 RG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk 103 (245)
T COG1189 62 RGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAK 103 (245)
T ss_pred cHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCc
Confidence 4577788888874 57899999999999997666666666544
No 166
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=65.45 E-value=4.4 Score=34.15 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.9
Q ss_pred CeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 124 KKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
+.++|+|||+|...+.+|-+.....|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIa 60 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIA 60 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhhee
Confidence 37889999999999998887655544
No 167
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=63.61 E-value=10 Score=28.18 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=15.5
Q ss_pred CeEEEeCCCCChhHHHHhhcC
Q 031904 124 KKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~ 144 (150)
..-++||||-||+==++..-|
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EG 80 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEG 80 (112)
T ss_pred CceEEccCCchHHHHHHHhCC
Confidence 467899999998766655543
No 168
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=63.00 E-value=12 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhhhhcCcccc-CCCeEEEeCCCCChhHHHHhhcC
Q 031904 102 SGVVLGKFLEHAVDSGMLLL-HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~-~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
|+.-|.+-+... +-... .+.+||+|||++|=-.=++...+
T Consensus 5 a~~KL~ei~~~~---~~~~~~~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 5 AAFKLYEIDEKF---KIFKPGKGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp HHHHHHHHHHTT---SSS-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred HHHHHHHHHHHC---CCCCcccccEEEEcCCcccceeeeeeecc
Confidence 455566655553 11222 45899999999976665655554
No 169
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=62.05 E-value=15 Score=32.36 Aligned_cols=31 Identities=23% Similarity=0.074 Sum_probs=24.2
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
...+|++||+|||.+|--.-.+...|.+++|
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~A 238 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGMFVTA 238 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCCEEEE
Confidence 3578999999999998777777777765544
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=6.7 Score=32.56 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.0
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.+.+|.+.|++|+|+|-+.-+.+.+..
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg 105 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVG 105 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhc
Confidence 357899999999999988888885543
No 171
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=60.90 E-value=6.1 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=18.6
Q ss_pred echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCC
Q 031904 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCG 134 (150)
Q Consensus 100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtG 134 (150)
|=-+++..+|+... ....++.+|||||||=|
T Consensus 44 wvKs~LI~~~~~~~----~~~~~~~~VLDl~CGkG 74 (331)
T PF03291_consen 44 WVKSVLIQKYAKKV----KQNRPGLTVLDLCCGKG 74 (331)
T ss_dssp HHHHHHHHHHCHCC----CCTTTT-EEEEET-TTT
T ss_pred HHHHHHHHHHHHhh----hccCCCCeEEEecCCCc
Confidence 66666666665432 11127889999999965
No 172
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=60.33 E-value=14 Score=31.86 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=33.6
Q ss_pred ceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA 149 (150)
Q Consensus 96 G~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~ 149 (150)
|..+=+-+.++...+.. ...-.+..|||.|-|||.+-..+--.+..++|
T Consensus 37 GQHilkNp~v~~~I~~k-----a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA 85 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEK-----ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVA 85 (315)
T ss_pred chhhhcCHHHHHHHHhc-----cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEE
Confidence 44444444444444433 23456679999999999999988888887765
No 173
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=56.61 E-value=9 Score=32.09 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=16.3
Q ss_pred cCCCeEEEeCCCCChhHHHHhh
Q 031904 121 LHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
-.-.+|.+||||+|-.-=.++.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~ 50 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLAR 50 (257)
T ss_pred cccceeeecCCCCCHHHHHHHH
Confidence 3457999999999976655444
No 174
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=56.38 E-value=9.8 Score=30.70 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
+..|.+|+.+. ..-.+.+||-.|||.|.=.+.+|..|..++
T Consensus 23 ~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~~Vv 63 (218)
T PF05724_consen 23 NPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVV 63 (218)
T ss_dssp THHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTEEEE
T ss_pred CHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCCeEE
Confidence 77888888762 234467999999999999999998886554
No 175
>PRK01581 speE spermidine synthase; Validated
Probab=56.12 E-value=9.2 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.9
Q ss_pred cCCCeEEEeCCCCChhHHHHhhc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l 143 (150)
...++||+||+|+|.....+.+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc
Confidence 45689999999998765544443
No 176
>PLN02366 spermidine synthase
Probab=55.96 E-value=11 Score=32.12 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=18.2
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
..++||.+|+|.|.....+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC
Confidence 4689999999999887776665
No 177
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.43 E-value=8.2 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=15.6
Q ss_pred CCeEEEeCCCCChhHHHHh
Q 031904 123 GKKIVELGSGCGLVGPFGC 141 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa 141 (150)
.-+|+|||||+|...+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999998887653
No 178
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=53.01 E-value=18 Score=32.54 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=18.9
Q ss_pred CCCeEEEeCCCCChhHHHHhhcC
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
.+.+|||.+||+|...+.++...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 56799999999999888776543
No 179
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=23 Score=32.78 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
++-+|-+++..+ ...-.++.+|++=||||+.|+++|+-..++
T Consensus 367 ~aevLys~i~e~----~~l~~~k~llDv~CGTG~iglala~~~~~V 408 (534)
T KOG2187|consen 367 AAEVLYSTIGEW----AGLPADKTLLDVCCGTGTIGLALARGVKRV 408 (534)
T ss_pred HHHHHHHHHHHH----hCCCCCcEEEEEeecCCceehhhhccccce
Confidence 455666666664 234455899999999999999999865543
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=46.46 E-value=20 Score=28.77 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=25.3
Q ss_pred CccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 93 g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
-+.|-..+. .+++.|..- ..-++...++||||.|=+=+.+|...
T Consensus 21 ~~YGEi~~~---~~~~il~~~-----~l~~~dvF~DlGSG~G~~v~~aal~~ 64 (205)
T PF08123_consen 21 ETYGEISPE---FVSKILDEL-----NLTPDDVFYDLGSGVGNVVFQAALQT 64 (205)
T ss_dssp CCGGGCHHH---HHHHHHHHT-----T--TT-EEEEES-TTSHHHHHHHHHH
T ss_pred cceeecCHH---HHHHHHHHh-----CCCCCCEEEECCCCCCHHHHHHHHHc
Confidence 345666553 344444331 23346789999999998877777543
No 181
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=44.74 E-value=14 Score=31.71 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCCeEEEeCCCCCh-hHHHHhhc
Q 031904 122 HGKKIVELGSGCGL-VGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL-~Gi~aa~l 143 (150)
++.+++|||||.|- ..+++..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL 98 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEAL 98 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHH
Confidence 45689999999875 45555554
No 182
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=42.98 E-value=18 Score=28.99 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=19.1
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYP 145 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~ 145 (150)
.-+|.+|+++-||+|-.+|.+|+.++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~ 124 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK 124 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC
Confidence 34688999999999999999998543
No 183
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=42.72 E-value=29 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+.|.+||||=||+|.+|+=|..=|.+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~ 67 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAA 67 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCc
Confidence 589999999999999999988765554
No 184
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=42.23 E-value=33 Score=30.37 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHhhhhhcCccccCCCeEEEeCCCCChhH
Q 031904 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137 (150)
Q Consensus 105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~G 137 (150)
.++.|+.+.... -.......++|||+|.|...
T Consensus 61 lla~~~~~~wq~-~g~p~~~~lvEiGaG~G~l~ 92 (370)
T COG1565 61 LLAEQFLQLWQE-LGRPAPLKLVEIGAGRGTLA 92 (370)
T ss_pred HHHHHHHHHHHH-hcCCCCceEEEeCCCcChHH
Confidence 466666654311 01122358999999999765
No 185
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=40.96 E-value=20 Score=31.43 Aligned_cols=21 Identities=14% Similarity=-0.040 Sum_probs=18.9
Q ss_pred CCeEEEeCCCCChhHHHHhhc
Q 031904 123 GKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l 143 (150)
+.+|||+-||+|+.||-+++-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e 65 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHE 65 (374)
T ss_pred CCEEEECCCchhHHHHHHHhh
Confidence 458999999999999999885
No 186
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=40.74 E-value=29 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=17.4
Q ss_pred CeEEEeCCCCChhHHHHhhcCCc
Q 031904 124 KKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 124 k~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..+||+|||.|=.=+-.|..-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~ 72 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE 72 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC
Confidence 57999999998766666665543
No 187
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=40.46 E-value=26 Score=22.56 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=10.8
Q ss_pred EEEeCCCCChhH
Q 031904 126 IVELGSGCGLVG 137 (150)
Q Consensus 126 VLELGaGtGL~G 137 (150)
++++|||+|...
T Consensus 52 ~ld~~~g~g~~~ 63 (257)
T COG0500 52 VLDIGCGTGRLA 63 (257)
T ss_pred eEEecCCcCHHH
Confidence 999999999765
No 188
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=39.57 E-value=31 Score=28.38 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=20.8
Q ss_pred chHHHHHHHHhhhhhcCccccCCCeEEEeCCC
Q 031904 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSG 132 (150)
Q Consensus 101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaG 132 (150)
++|-+|.+||..........-...++||.||=
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGal 61 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGAL 61 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeeccc
Confidence 47889999998853111111123699999984
No 189
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.99 E-value=37 Score=28.34 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..-++|+..- -..++.|++||||.=||...++.|...|.
T Consensus 59 ~d~g~fl~~l----i~~~~ak~~lelGvfTGySaL~~Alalp~ 97 (237)
T KOG1663|consen 59 PDKGQFLQML----IRLLNAKRTLELGVFTGYSALAVALALPE 97 (237)
T ss_pred hHHHHHHHHH----HHHhCCceEEEEecccCHHHHHHHHhcCC
Confidence 3444555442 13578899999999999999999988776
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=32.32 E-value=45 Score=30.23 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
.+..+||+|||.|=.-+-.|..-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~ 371 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD 371 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC
Confidence 4678999999999777777776664
No 191
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.84 E-value=36 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred cCCCeEEEeCCCC-ChhHHHHhh-cCCc
Q 031904 121 LHGKKIVELGSGC-GLVGPFGCS-SYPY 146 (150)
Q Consensus 121 ~~gk~VLELGaGt-GL~Gi~aa~-l~~~ 146 (150)
-.|.+||=||||+ ||+.+++|+ +|.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~ 195 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGAS 195 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence 3578999999999 998888777 4443
No 192
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.95 E-value=67 Score=28.77 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.1
Q ss_pred cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904 121 LHGKKIVELGSGCGLVGPFGCSSYPYR 147 (150)
Q Consensus 121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~ 147 (150)
..+.+||||=||.|..|+.+|.-..++
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V 318 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKV 318 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEE
Confidence 456799999999999999999655443
No 193
>PLN02823 spermine synthase
Probab=25.88 E-value=66 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.9
Q ss_pred CCCeEEEeCCCCChhHHHHhhc
Q 031904 122 HGKKIVELGSGCGLVGPFGCSS 143 (150)
Q Consensus 122 ~gk~VLELGaGtGL~Gi~aa~l 143 (150)
..++||.||.|.|....-+.+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~ 124 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH 124 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC
Confidence 4589999999998777655543
No 194
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=24.29 E-value=2e+02 Score=19.04 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHhhhhhcCccccCCCeEEEeCCCC
Q 031904 106 LGKFLEHAVDSGMLLLHGKKIVELGSGC 133 (150)
Q Consensus 106 La~~L~~~~~~~~~~~~gk~VLELGaGt 133 (150)
..+||.+........+++++++=+|+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~v~i~G~G~ 33 (86)
T cd05191 6 AVALLKAAGKVTNKSLKGKTVVVLGAGE 33 (86)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEECCCH
Confidence 3455555422223458899999999974
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=23.63 E-value=29 Score=29.17 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=18.7
Q ss_pred CCeEEEeCCCCChhHHHHhhcCCccc
Q 031904 123 GKKIVELGSGCGLVGPFGCSSYPYRF 148 (150)
Q Consensus 123 gk~VLELGaGtGL~Gi~aa~l~~~~~ 148 (150)
.+++|+||||-|=+....+......|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevy 138 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVY 138 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHH
Confidence 47999999999987766655443333
No 196
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=23.47 E-value=72 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.1
Q ss_pred ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904 120 LLHGKKIVELGSGCGLVGPFGCSSY 144 (150)
Q Consensus 120 ~~~gk~VLELGaGtGL~Gi~aa~l~ 144 (150)
...|.+|||=|.|.|-++.+.++..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV 127 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAV 127 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhh
Confidence 4578999999999999998888744
No 197
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.09 E-value=1.6e+02 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.1
Q ss_pred cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCSSYPY 146 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~ 146 (150)
..-.|.+|++|||-.|-=+=++++....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~ 69 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGA 69 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCC
Confidence 4456799999999997666666654443
No 198
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=22.75 E-value=52 Score=18.78 Aligned_cols=10 Identities=50% Similarity=0.590 Sum_probs=6.9
Q ss_pred CCCCChhHHH
Q 031904 130 GSGCGLVGPF 139 (150)
Q Consensus 130 GaGtGL~Gi~ 139 (150)
|+|.|++-++
T Consensus 14 GSGSGlplLv 23 (29)
T PF08515_consen 14 GSGSGLPLLV 23 (29)
T ss_dssp TSSSSS-HHH
T ss_pred CCCCCchhhh
Confidence 7888888665
No 199
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=21.08 E-value=92 Score=24.09 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=16.0
Q ss_pred cccCCCeEEEeCCCCChhHHHHhh
Q 031904 119 LLLHGKKIVELGSGCGLVGPFGCS 142 (150)
Q Consensus 119 ~~~~gk~VLELGaGtGL~Gi~aa~ 142 (150)
..+.||+||=+|+|- .+|..+++
T Consensus 40 ~~l~gk~vlViG~G~-~~G~~~a~ 62 (168)
T cd01080 40 IDLAGKKVVVVGRSN-IVGKPLAA 62 (168)
T ss_pred CCCCCCEEEEECCcH-HHHHHHHH
Confidence 468999999999982 34553333
Done!