Query 031906
Match_columns 150
No_of_seqs 204 out of 1138
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 3.6E-26 1.2E-30 158.4 12.0 88 26-114 6-93 (102)
2 1k99_A Upstream binding factor 99.9 1E-25 3.5E-30 155.5 8.7 85 29-114 2-86 (99)
3 2eqz_A High mobility group pro 99.9 3.5E-25 1.2E-29 148.8 10.6 79 28-107 6-86 (86)
4 2lhj_A High mobility group pro 99.9 5.7E-26 1.9E-30 156.0 6.0 82 28-110 13-96 (97)
5 1hme_A High mobility group pro 99.9 3.9E-25 1.3E-29 145.5 7.5 76 32-108 1-76 (77)
6 1cg7_A Protein (NON histone pr 99.9 1.2E-25 4.2E-30 153.3 4.6 83 27-110 10-92 (93)
7 2crj_A SWI/SNF-related matrix- 99.9 2.2E-24 7.7E-29 146.7 10.2 78 32-110 2-79 (92)
8 2e6o_A HMG box-containing prot 99.9 1.2E-24 4E-29 146.7 7.8 77 30-107 10-86 (87)
9 2cs1_A PMS1 protein homolog 1; 99.9 2.1E-24 7.3E-29 146.8 8.7 81 32-113 2-82 (92)
10 1wgf_A Upstream binding factor 99.9 2.8E-25 9.5E-30 150.7 4.1 79 26-105 9-87 (90)
11 3nm9_A HMG-D, high mobility gr 99.9 9.3E-24 3.2E-28 137.7 9.3 72 35-109 1-72 (73)
12 1aab_A High mobility group pro 99.9 1.1E-24 3.8E-29 145.3 5.0 78 32-110 2-81 (83)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 3.2E-24 1.1E-28 140.7 6.1 74 34-108 1-74 (76)
14 2yrq_A High mobility group pro 99.9 8.8E-24 3E-28 158.5 9.3 109 29-150 7-116 (173)
15 1wxl_A Single-strand recogniti 99.9 1.6E-23 5.4E-28 136.6 7.4 72 35-109 1-72 (73)
16 1j46_A SRY, sex-determining re 99.9 4E-23 1.4E-27 138.5 8.3 77 34-111 1-77 (85)
17 1ckt_A High mobility group 1 p 99.9 4.3E-23 1.5E-27 133.5 7.8 69 37-106 1-71 (71)
18 1wz6_A HMG-box transcription f 99.9 1.1E-23 3.7E-28 140.2 4.6 77 33-110 3-79 (82)
19 2gzk_A Sex-determining region 99.9 1E-22 3.4E-27 150.6 10.0 79 29-108 80-158 (159)
20 1v64_A Nucleolar transcription 99.9 1.6E-22 5.3E-27 141.6 9.6 81 27-112 6-87 (108)
21 4a3n_A Transcription factor SO 99.9 3.4E-23 1.2E-27 133.9 5.5 71 36-107 1-71 (71)
22 4euw_A Transcription factor SO 99.9 1.1E-22 3.8E-27 141.8 8.1 80 30-110 22-101 (106)
23 1gt0_D Transcription factor SO 99.9 1.1E-22 3.8E-27 134.6 7.5 75 36-111 1-75 (80)
24 3f27_D Transcription factor SO 99.9 8.3E-23 2.8E-27 136.0 6.8 76 34-110 3-78 (83)
25 3tmm_A Transcription factor A, 99.9 1.5E-23 5.1E-28 164.9 3.0 119 31-150 35-161 (238)
26 2lef_A LEF-1 HMG, protein (lym 99.9 2.1E-22 7.1E-27 135.2 8.1 75 36-111 1-75 (86)
27 2yrq_A High mobility group pro 99.9 5.2E-22 1.8E-26 148.8 10.3 80 29-109 93-172 (173)
28 3tq6_A Transcription factor A, 99.9 4E-23 1.4E-27 160.1 4.0 115 34-150 6-129 (214)
29 3u2b_C Transcription factor SO 99.9 1.7E-22 5.8E-27 133.3 6.4 74 36-110 1-74 (79)
30 1i11_A Transcription factor SO 99.9 1.9E-22 6.4E-27 133.9 6.5 74 35-109 2-75 (81)
31 1l8y_A Upstream binding factor 99.9 8.6E-22 2.9E-26 133.7 8.6 76 36-113 3-78 (91)
32 3fgh_A Transcription factor A, 99.9 3.6E-22 1.2E-26 128.0 6.1 66 36-106 1-66 (67)
33 1v63_A Nucleolar transcription 99.8 6.4E-21 2.2E-25 131.8 10.1 79 33-114 4-82 (101)
34 2d7l_A WD repeat and HMG-box D 99.8 4.8E-21 1.6E-25 127.6 6.2 61 34-95 2-63 (81)
35 2gzk_A Sex-determining region 99.8 5.3E-21 1.8E-25 141.3 6.7 102 35-150 2-103 (159)
36 2yuk_A Myeloid/lymphoid or mix 99.8 1.6E-21 5.4E-26 132.2 -0.3 69 29-102 14-84 (90)
37 2cto_A Novel protein; high mob 99.8 3E-20 1E-24 126.8 3.8 70 32-104 5-77 (93)
38 3tq6_A Transcription factor A, 99.8 1E-20 3.4E-25 146.6 0.3 81 29-114 106-186 (214)
39 3tmm_A Transcription factor A, 99.8 1.6E-20 5.5E-25 147.5 0.2 81 29-114 138-218 (238)
40 2qgu_A Probable signal peptide 78.0 2.7 9.2E-05 31.5 4.4 47 64-110 72-120 (211)
41 3o39_A Periplasmic protein rel 25.4 70 0.0024 21.3 3.4 25 70-94 81-105 (108)
42 2lkw_A Membrane fusion protein 25.2 16 0.00053 17.9 0.1 11 36-46 9-19 (26)
43 3mhp_C TIC62_peptide, ferredox 23.5 11 0.00037 18.9 -0.7 11 38-48 2-12 (26)
44 2yua_A Williams-beuren syndrom 23.4 93 0.0032 19.8 3.7 36 50-85 36-75 (99)
45 1j1d_B Troponin T, TNT; THIN f 23.2 1.7E+02 0.0058 19.4 5.1 51 48-101 29-79 (106)
46 3itf_A Periplasmic adaptor pro 20.2 1.1E+02 0.0038 21.4 3.8 29 70-98 109-137 (145)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=3.6e-26 Score=158.42 Aligned_cols=88 Identities=28% Similarity=0.511 Sum_probs=82.7
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031906 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (150)
Q Consensus 26 k~~~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (150)
.+++++.+||++||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|++
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hHHhcCCCC
Q 031906 106 YNRRQAEGT 114 (150)
Q Consensus 106 y~~~~~~~~ 114 (150)
|..++....
T Consensus 85 Y~~~~~~~~ 93 (102)
T 2co9_A 85 YRASLVSKS 93 (102)
T ss_dssp HHHHHTSSC
T ss_pred HHhhccccc
Confidence 999988654
No 2
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=1e-25 Score=155.45 Aligned_cols=85 Identities=28% Similarity=0.525 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
+++.+||++||||+||||||+++.|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 031906 109 RQAEGT 114 (150)
Q Consensus 109 ~~~~~~ 114 (150)
.++.-.
T Consensus 81 ~~P~~~ 86 (99)
T 1k99_A 81 DHPDLI 86 (99)
T ss_dssp CCCCCS
T ss_pred HCCCcc
Confidence 877543
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=148.84 Aligned_cols=79 Identities=39% Similarity=0.671 Sum_probs=74.5
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031906 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (150)
Q Consensus 28 ~~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (150)
+++..+||++||||+||||||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 64 7999999999999999999999999999999999999999
Q ss_pred hH
Q 031906 106 YN 107 (150)
Q Consensus 106 y~ 107 (150)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 4
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=5.7e-26 Score=155.97 Aligned_cols=82 Identities=37% Similarity=0.708 Sum_probs=77.9
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031906 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (150)
Q Consensus 28 ~~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (150)
+++..+||++|+||+||||||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 91 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAE 91 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999 88 9999999999999999999999999999999999999999
Q ss_pred hHHhc
Q 031906 106 YNRRQ 110 (150)
Q Consensus 106 y~~~~ 110 (150)
|..+.
T Consensus 92 y~~~~ 96 (97)
T 2lhj_A 92 YAQRK 96 (97)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99764
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=3.9e-25 Score=145.46 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 32 ~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
++||++|+||+||||||++++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++.+|..+|+.|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 899999999999999999999999999999999999999999974
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.91 E-value=1.2e-25 Score=153.29 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.9
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHh
Q 031906 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (150)
Q Consensus 27 ~~~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (150)
++++..+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 031906 107 NRRQ 110 (150)
Q Consensus 107 ~~~~ 110 (150)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9864
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.91 E-value=2.2e-24 Score=146.65 Aligned_cols=78 Identities=29% Similarity=0.591 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 031906 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (150)
Q Consensus 32 ~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (150)
.+||++||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|++|..+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 4799999999999999999999999999999 89999999999999999999999999999999999999999999764
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=146.66 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhH
Q 031906 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (150)
Q Consensus 30 k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (150)
+..+||++||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 567799999999999999999999999999999 99999999999999999999999999999999999999998885
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=146.76 Aligned_cols=81 Identities=28% Similarity=0.424 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 031906 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (150)
Q Consensus 32 ~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (150)
..+|++||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|.+++++|..+|..|..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999 899999999999999999999999999999999999999999998876
Q ss_pred CC
Q 031906 112 EG 113 (150)
Q Consensus 112 ~~ 113 (150)
..
T Consensus 81 ~~ 82 (92)
T 2cs1_A 81 QM 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=2.8e-25 Score=150.66 Aligned_cols=79 Identities=30% Similarity=0.480 Sum_probs=73.1
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031906 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (150)
Q Consensus 26 k~~~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (150)
++++++.+||++||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 999999999999999999999999999999999999877653
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.90 E-value=9.3e-24 Score=137.73 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 031906 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (150)
Q Consensus 35 p~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (150)
+++||||+|||||||+++|..|+.+||+ +++++|+++||++|++|++ |++|.++|.+++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999 8999999999999999998 9999999999999999999999875
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.90 E-value=1.1e-24 Score=145.32 Aligned_cols=78 Identities=35% Similarity=0.618 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 031906 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (150)
Q Consensus 32 ~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (150)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++++|..+|..|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 65 59999999999999999999999999999999999999999865
Q ss_pred c
Q 031906 110 Q 110 (150)
Q Consensus 110 ~ 110 (150)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 3
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=3.2e-24 Score=140.69 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=70.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 34 dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
||++||||+||||||++++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..++++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 899999999999999999999999999999999999999999864
No 14
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=8.8e-24 Score=158.47 Aligned_cols=109 Identities=28% Similarity=0.541 Sum_probs=95.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~-~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (150)
+...+||++||||+|||+||++++|..|+.+||+. +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999994 48999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCchhhhhhhhhhccCCCCCCCCCCcccccccccCC
Q 031906 108 RRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 150 (150)
Q Consensus 108 ~~~~~~~~~~~~e~~~k~k~e~~~~~~~e~~~~~~f~~~~~~~ 150 (150)
...... . ....++..+......||+||.++
T Consensus 87 ~~~~~~-----------k--k~~kdp~~pKrP~saf~lf~~~~ 116 (173)
T 2yrq_A 87 PPKGET-----------K--KKFKDPNAPKRPPSAFFLFCSEY 116 (173)
T ss_dssp CCCCCS-----------S--CSCCCSSSCCCCCCHHHHHHHHH
T ss_pred hhhhhh-----------c--ccccCCccccCcccHHHHHHHHH
Confidence 764421 0 11236678889999999999763
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.89 E-value=1.6e-23 Score=136.65 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 031906 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (150)
Q Consensus 35 p~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (150)
|++||||+||||||++++|..|+.+||+ +++++|+++||++|++| ++|++|.++|..++++|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999 89999999999999999 899999999999999999999999764
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.89 E-value=4e-23 Score=138.49 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=73.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 031906 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (150)
Q Consensus 34 dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (150)
.|++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..++++|.....
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~pr 77 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPR 77 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 48999999999999999999999999999 899999999999999999999999999999999999999999987554
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.89 E-value=4.3e-23 Score=133.54 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=66.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHh
Q 031906 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (150)
Q Consensus 37 ~PKrP~sAy~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (150)
+||||+|||+||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 59999999999999999999999999999999999999887
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=1.1e-23 Score=140.24 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=73.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 031906 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (150)
Q Consensus 33 ~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (150)
.+|++||||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|++|+...
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 89999999999999999999999999999999999999999997654
No 19
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.88 E-value=1e-22 Score=150.62 Aligned_cols=79 Identities=48% Similarity=0.795 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
++..+||++||||+|||+|||+++|..|+.+||+ +++++|+++||++|++|++++|++|.++|..++++|..+|++|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 20
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1.6e-22 Score=141.58 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=75.2
Q ss_pred ccCCCCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031906 27 KSGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (150)
Q Consensus 27 ~~~k~~~dp~~P-KrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (150)
.+.++.+||++| |||+|||+|||+++|..|+ + +++.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999 9999999999999999886 5 799999999999999999999999999999999999999999
Q ss_pred hHHhcCC
Q 031906 106 YNRRQAE 112 (150)
Q Consensus 106 y~~~~~~ 112 (150)
|..++.+
T Consensus 81 Y~~~~~~ 87 (108)
T 1v64_A 81 FLESLPE 87 (108)
T ss_dssp HHHHSCH
T ss_pred HHhhCCH
Confidence 9998863
No 21
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.88 E-value=3.4e-23 Score=133.86 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhH
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (150)
++||||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 89999999999999999999999999999999999999999885
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=141.80 Aligned_cols=80 Identities=29% Similarity=0.555 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 031906 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (150)
Q Consensus 30 k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (150)
...++|+.||||+||||||++++|..|+.++|+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|+-.
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 446789999999999999999999999999999 9999999999999999999999999999999999999999999765
Q ss_pred c
Q 031906 110 Q 110 (150)
Q Consensus 110 ~ 110 (150)
.
T Consensus 101 P 101 (106)
T 4euw_A 101 P 101 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.88 E-value=1.1e-22 Score=134.64 Aligned_cols=75 Identities=28% Similarity=0.555 Sum_probs=71.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (150)
+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|++|.....
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 579999999999999999999999999 999999999999999999999999999999999999999999986543
No 24
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.87 E-value=8.3e-23 Score=136.04 Aligned_cols=76 Identities=30% Similarity=0.564 Sum_probs=69.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 031906 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (150)
Q Consensus 34 dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (150)
.++.||||+||||||++++|..|+.+||+ +++++|+++||++|++|++++|++|.++|..++++|..+|++|+-..
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 46799999999999999999999999999 89999999999999999999999999999999999999999997543
No 25
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.5e-23 Score=164.85 Aligned_cols=119 Identities=11% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 031906 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (150)
Q Consensus 31 ~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (150)
...||++||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999 89999999999999999999999999999999999999999999887
Q ss_pred CCCCCCc-h----h---hhhhhhhhccCCCCCCCCCCcccccccccCC
Q 031906 111 AEGTKPE-E----E---EESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 150 (150)
Q Consensus 111 ~~~~~~~-~----~---e~~~k~k~e~~~~~~~e~~~~~~f~~~~~~~ 150 (150)
++..... . . ......+...-.+++.+...-..||+||.++
T Consensus 114 ~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~ 161 (238)
T 3tmm_A 114 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 161 (238)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHH
Confidence 6422100 0 0 0000011111235788999999999999864
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=2.1e-22 Score=135.17 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=71.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (150)
+.|+||+||||||++++|..|..+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|++|.....
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 75 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 479999999999999999999999999 899999999999999999999999999999999999999999986654
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=148.78 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
+++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||.+|++|++++|++|.++|..++++|..+|++|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred h
Q 031906 109 R 109 (150)
Q Consensus 109 ~ 109 (150)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 28
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.87 E-value=4e-23 Score=160.07 Aligned_cols=115 Identities=11% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcCCC
Q 031906 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113 (150)
Q Consensus 34 dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~ 113 (150)
.|++||||+|||+|||+++|..|+.+||+ +++++|+++||++|+.||+++|++|.++|..++++|..+|..|...+++.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999999887642
Q ss_pred CCCch-hh--------hhhhhhhccCCCCCCCCCCcccccccccCC
Q 031906 114 TKPEE-EE--------ESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 150 (150)
Q Consensus 114 ~~~~~-~e--------~~~k~k~e~~~~~~~e~~~~~~f~~~~~~~ 150 (150)
..... .+ +..+. ...--+++.+...-+.||+||.++
T Consensus 85 q~~~~~~~~~~~~~krk~~kk-kk~~kdp~~PKrP~say~lF~~e~ 129 (214)
T 3tq6_A 85 QIMSLEKEIMDKHLKRKAMTK-KKELTLLGKPKRPRSAYNVYVAER 129 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchhh-hhhhccccCcccccchhhhhHHHH
Confidence 21000 00 00111 111235688899999999999863
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.7e-22 Score=133.25 Aligned_cols=74 Identities=28% Similarity=0.550 Sum_probs=70.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (150)
|.||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+-..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~P 74 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 74 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999997543
No 30
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.9e-22 Score=133.90 Aligned_cols=74 Identities=23% Similarity=0.473 Sum_probs=68.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 031906 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (150)
Q Consensus 35 p~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (150)
++.||||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++.+|..++++|+-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 4789999999999999999999999999 8999999999999999999999999999999999999999999864
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.86 E-value=8.6e-22 Score=133.65 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcCCC
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~ 113 (150)
+.|+||+|||+||+++.|..++..+|+ ++++|++.||++|++|++++|++|+++|..++++|..+|..|+.+....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~ 78 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT 78 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 689999999999999999999999998 7899999999999999999999999999999999999999999877653
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=128.04 Aligned_cols=66 Identities=35% Similarity=0.633 Sum_probs=62.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHh
Q 031906 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (150)
Q Consensus 36 ~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (150)
|+||||+|||+||++++|..|+..|| ++|+++||++|++||+++|++|.++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999976554 6999999999999999999999999999999999999998
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=6.4e-21 Score=131.85 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcCC
Q 031906 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (150)
Q Consensus 33 ~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (150)
...++||||+|||+|||++++. ...+++ +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|..++.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3457999999999999999974 234555 6899999999999999999999999999999999999999999999876
Q ss_pred CC
Q 031906 113 GT 114 (150)
Q Consensus 113 ~~ 114 (150)
..
T Consensus 81 ~~ 82 (101)
T 1v63_A 81 QD 82 (101)
T ss_dssp TH
T ss_pred HH
Confidence 44
No 34
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=127.62 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=59.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 031906 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (150)
Q Consensus 34 dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~-~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~ 95 (150)
++++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 87 999999999999999999999999999987
No 35
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.83 E-value=5.3e-21 Score=141.31 Aligned_cols=102 Identities=25% Similarity=0.489 Sum_probs=89.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHHhcCCCC
Q 031906 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114 (150)
Q Consensus 35 p~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~~ 114 (150)
|+.|+||+||||||+.+.|..|..+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..+|..|......
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~-- 78 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGE-- 78 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCC--
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccccc--
Confidence 6799999999999999999999999999 9999999999999999999999999999999999999999999765321
Q ss_pred CCchhhhhhhhhhccCCCCCCCCCCcccccccccCC
Q 031906 115 KPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 150 (150)
Q Consensus 115 ~~~~~e~~~k~k~e~~~~~~~e~~~~~~f~~~~~~~ 150 (150)
+ .....+++.+...-+.||+||.++
T Consensus 79 ---------~--kk~~kdp~~pKrp~say~lf~~~~ 103 (159)
T 2gzk_A 79 ---------T--KKKFKDPNAPKRPPSAFFLFCSEY 103 (159)
T ss_dssp ---------C--GGGSCCTTCCCCCCCHHHHHHHHH
T ss_pred ---------c--cccccccccccccccccchhhHhh
Confidence 0 112346788899999999999864
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-21 Score=132.24 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e 102 (150)
.+..+||++||||+|||||||+++|..|+.+||+ ++ +++|+ ++|++|++++|++|+++|.+++++|...
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3445699999999999999999999999999999 88 88887 9999999999999999999999999753
No 37
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3e-20 Score=126.76 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 031906 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (150)
Q Consensus 32 ~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l---~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (150)
..++++||||+|||||||+++|.+|+.+ + +++.+|+++| |++|++|++++|++|+++|.+++++|.+++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4578999999999999999999999988 5 7889999999 9999999999999999999999999988763
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=1e-20 Score=146.60 Aligned_cols=81 Identities=30% Similarity=0.457 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
++..+||++||||+|||+|||+++|..|+..+ +.+|+++||++|++|++++|++|.++|..++++|..+|++|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999998886544 4599999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 031906 109 RQAEGT 114 (150)
Q Consensus 109 ~~~~~~ 114 (150)
+++...
T Consensus 181 ~~~~~~ 186 (214)
T 3tq6_A 181 QMIEVG 186 (214)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 985433
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.6e-20 Score=147.53 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 031906 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (150)
Q Consensus 29 ~k~~~dp~~PKrP~sAy~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (150)
++..+||++||||+|||+|||+++|..|+..|| .+|+++||++|++|++++|++|.++|..++++|..+|++|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999999999988865544 599999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 031906 109 RQAEGT 114 (150)
Q Consensus 109 ~~~~~~ 114 (150)
++....
T Consensus 213 k~~~~~ 218 (238)
T 3tmm_A 213 QMIEVG 218 (238)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 985433
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=78.00 E-value=2.7 Score=31.52 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCHHHHHHH-HHhhhcCCChhhhhHHHHHHHHH-HHHHHHHHHHhHHhc
Q 031906 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRRQ 110 (150)
Q Consensus 64 ~~~~ei~k~-l~~~Wk~Ls~eeK~~Y~~~a~~~-k~~y~~e~~~y~~~~ 110 (150)
.++..+++. ||..|+.+++++++.|.+..... ..-|-..+..|....
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 456666554 58999999999999999988774 667889999998543
No 41
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=25.44 E-value=70 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHH
Q 031906 70 GKAGGEKWKSMSEADKAPYVAKAEK 94 (150)
Q Consensus 70 ~k~l~~~Wk~Ls~eeK~~Y~~~a~~ 94 (150)
.+.-..++.-|++++|..|.+..++
T Consensus 81 ~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 81 METQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4445789999999999999876653
No 42
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=25.19 E-value=16 Score=17.86 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=8.0
Q ss_pred CCCCCCCChHH
Q 031906 36 NKPKRPASAFF 46 (150)
Q Consensus 36 ~~PKrP~sAy~ 46 (150)
.+|-.|+|||+
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46677888875
No 43
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=23.45 E-value=11 Score=18.88 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.6
Q ss_pred CCCCCChHHHH
Q 031906 38 PKRPASAFFVF 48 (150)
Q Consensus 38 PKrP~sAy~lF 48 (150)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35788887655
No 44
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.36 E-value=93 Score=19.76 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHhhhcCCChhhh
Q 031906 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADK 85 (150)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~Ls~eeK 85 (150)
+..|..++.-||+... ..+..+.|.+.|..|++..+
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 3455666778888321 35778889999998887655
No 45
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.21 E-value=1.7e+02 Score=19.41 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHH
Q 031906 48 FMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (150)
Q Consensus 48 F~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~y~~ 101 (150)
|+.++++.+ ..++ ++..++...+-+.|..+..-+=..|.-.+...+..|..
T Consensus 29 iLaER~kpL--~id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI 79 (106)
T 1j1d_B 29 ILAERRKVL--AIDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEI 79 (106)
T ss_dssp HHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHH
Confidence 566666555 3344 78889999999999988877777888888887777753
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=20.16 E-value=1.1e+02 Score=21.35 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=21.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHH
Q 031906 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVE 98 (150)
Q Consensus 70 ~k~l~~~Wk~Ls~eeK~~Y~~~a~~~k~~ 98 (150)
++.-.+++.-|++++|..|.+..++-...
T Consensus 109 ~k~~~qiy~vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 109 AKVRNQMYRLLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 44446889999999999988876665443
Done!