BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031907
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
           GN=Os01g0838800 PE=2 SV=1
          Length = 177

 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 57  SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICL 116
           S ++VY  + D+  FV G DE +EL LA V+   + A+          R  L+    I L
Sbjct: 62  SYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFL 121

Query: 117 CLDEIVWKTLSYTTKA-----SFDGHG 138
           CLDE+V   +   T A        GHG
Sbjct: 122 CLDEVVDGGIVLETDAKAILEKVSGHG 148


>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
           PE=2 SV=1
          Length = 177

 Score = 40.0 bits (92), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 30  WRSFLVKLGADNLKGVKNEELLVASHKSVY------IVYTVLGDVSIFVVGKDEYDELAL 83
           W +   KL  +    VK ++    +   +       +VY  + D+  FV G +E +EL L
Sbjct: 29  WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELIL 88

Query: 84  AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIV 122
           A V+   T AV         +R  L+    I LCLDEIV
Sbjct: 89  ASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIV 127


>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
           GN=copZb PE=3 SV=1
          Length = 178

 Score = 35.8 bits (81), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 47  NEELLVASHKSVYIVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----I 101
           N EL +  +K V  + +   DV IFVVG     +ELAL +V+  + S  K AC      +
Sbjct: 54  NCELEIIDNKVV--IGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIM 111

Query: 102 PTERLFLDKYGKICLCLDEIV 122
            T++ FL+ Y  I L +DEIV
Sbjct: 112 ITKKTFLENYALIRLYIDEIV 132


>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
           PE=2 SV=1
          Length = 182

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 60  IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
           +VY  + D+  FV   D+ +EL +A V+   + +V         +R  L+    I LC+D
Sbjct: 70  VVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCID 129

Query: 120 EIV 122
           EIV
Sbjct: 130 EIV 132


>sp|Q6P0D9|CIAO1_DANRE Probable cytosolic iron-sulfur protein assembly protein ciao1
           OS=Danio rerio GN=ciao1 PE=2 SV=1
          Length = 330

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 42  LKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKI 101
           L+G +NE   VA   S  ++ T   D S+++   DE DE     V+ + T  VK      
Sbjct: 101 LEGHENEVKCVAWAPSGSLLATCSRDKSVWIWEVDEEDEYECLSVVNSHTQDVKHVVWHP 160

Query: 102 PTERLFLDKY-GKICLCLDEIVWKTLSYTTKASFDGH 137
             E L    Y  KIC+  +E       +  +A+ +GH
Sbjct: 161 TQELLASASYDNKICIYKEE----DDDWECRATLEGH 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.142    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,211,702
Number of Sequences: 539616
Number of extensions: 2189668
Number of successful extensions: 4126
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4118
Number of HSP's gapped (non-prelim): 11
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)