Query 031907
Match_columns 150
No_of_seqs 105 out of 433
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3343 Vesicle coat complex C 100.0 5.7E-39 1.2E-43 243.2 12.0 133 2-138 9-143 (175)
2 PF01217 Clat_adaptor_s: Clath 100.0 5.5E-35 1.2E-39 218.2 16.9 131 1-137 1-134 (141)
3 KOG0936 Clathrin adaptor compl 100.0 1.8E-35 3.9E-40 223.1 12.0 131 1-135 1-138 (182)
4 COG5030 APS2 Clathrin adaptor 100.0 2.1E-35 4.6E-40 219.5 11.4 130 1-135 1-132 (152)
5 KOG0934 Clathrin adaptor compl 100.0 2E-31 4.3E-36 197.8 7.1 126 1-131 1-127 (145)
6 KOG0935 Clathrin adaptor compl 100.0 9.6E-29 2.1E-33 180.3 9.4 130 1-134 1-132 (143)
7 COG5541 RET3 Vesicle coat comp 99.9 2.6E-27 5.6E-32 179.6 8.8 132 2-137 8-149 (187)
8 KOG2635 Medium subunit of clat 99.3 4.1E-11 8.8E-16 103.8 11.2 129 1-135 2-131 (512)
9 KOG0938 Adaptor complexes medi 99.0 6.8E-09 1.5E-13 88.0 11.5 126 1-133 1-126 (446)
10 KOG2740 Clathrin-associated pr 98.6 1.3E-07 2.9E-12 80.6 7.3 124 1-134 1-130 (418)
11 KOG0937 Adaptor complexes medi 98.4 3.2E-06 6.9E-11 73.5 11.7 128 2-134 1-128 (424)
12 PF15001 AP-5_subunit_s1: AP-5 98.0 0.00025 5.4E-09 56.0 13.0 80 57-136 103-182 (189)
13 PF08923 MAPKK1_Int: Mitogen-a 95.9 0.29 6.2E-06 35.9 11.3 92 2-96 17-114 (119)
14 PF03164 Mon1: Trafficking pro 94.8 0.64 1.4E-05 40.7 12.0 108 3-114 12-130 (415)
15 PF03259 Robl_LC7: Roadblock/L 75.9 19 0.00042 23.5 9.9 67 2-72 15-89 (91)
16 KOG0862 Synaptobrevin/VAMP-lik 73.2 48 0.001 26.9 11.4 98 1-101 1-102 (216)
17 COG3322 Predicted periplasmic 69.0 23 0.00049 30.0 6.9 21 2-22 104-124 (295)
18 KOG0997 Uncharacterized conser 56.9 1.4E+02 0.003 27.3 9.8 83 3-95 118-207 (523)
19 KOG0859 Synaptobrevin/VAMP-lik 42.0 1.7E+02 0.0037 23.6 7.3 63 10-78 9-71 (217)
20 PF05184 SapB_1: Saposin-like 39.1 59 0.0013 18.1 3.3 33 84-116 4-36 (39)
21 cd03016 PRX_1cys Peroxiredoxin 31.7 80 0.0017 24.4 4.1 20 3-22 118-137 (203)
22 PF04099 Sybindin: Sybindin-li 29.5 2.3E+02 0.0051 20.9 11.5 98 2-101 1-119 (142)
23 PF08784 RPA_C: Replication pr 28.6 50 0.0011 22.6 2.2 31 101-131 65-99 (102)
24 PF05228 CHASE4: CHASE4 domain 28.3 59 0.0013 23.5 2.6 21 2-22 50-72 (161)
25 PRK13599 putative peroxiredoxi 26.8 96 0.0021 24.5 3.8 21 2-22 119-139 (215)
26 PF14903 WG_beta_rep: WG conta 26.4 76 0.0016 16.9 2.3 16 7-22 3-18 (35)
27 TIGR00307 S8e ribosomal protei 25.6 40 0.00086 25.1 1.2 25 119-143 92-119 (127)
28 PRK13190 putative peroxiredoxi 24.0 1.1E+02 0.0023 23.8 3.5 21 2-22 117-137 (202)
29 PRK04049 30S ribosomal protein 22.4 51 0.0011 24.5 1.3 38 106-143 79-119 (127)
30 PF02268 TFIIA_gamma_N: Transc 21.9 31 0.00067 21.5 0.1 11 117-127 18-28 (49)
31 COG5122 TRS23 Transport protei 20.7 3.6E+02 0.0078 20.0 10.3 97 2-101 3-109 (134)
32 COG3455 Type VI protein secret 20.6 3E+02 0.0066 22.9 5.7 48 77-124 61-109 (262)
No 1
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-39 Score=243.17 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=123.2
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHH-HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~-~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE 80 (150)
|||++|+|++|+|+++|||++|+.. -+++++|++.++.|++|+ + .+|..++|.++|||.+-||+|||+|+.+|||
T Consensus 9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt--~--~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENE 84 (175)
T KOG3343|consen 9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKT--E--SEILLLDGNTVVYKSVIDLHFYVVGSEEENE 84 (175)
T ss_pred hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccc--c--ceeEEecCcEEEEEecccEEEEEecCcchhH
Confidence 7999999999999999999997665 778888999999988774 2 3477788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccCC
Q 031907 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGHG 138 (150)
Q Consensus 81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~~ 138 (150)
|.|.++++++.+|++.+++++|+|+.++||+|.++|++|||||+|+|+||| .+|++|-
T Consensus 85 l~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv 143 (175)
T KOG3343|consen 85 LMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRV 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7888763
No 2
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=100.00 E-value=5.5e-35 Score=218.20 Aligned_cols=131 Identities=26% Similarity=0.396 Sum_probs=108.3
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHH-HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY 78 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~-~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~e 78 (150)
||+|++|+|++|+|+++|||++ +.++ ++..++....... +.++. ++++.++++++|||+++||+|+++|+++|
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~e 75 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSS---RNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENE 75 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHT---SSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTS
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHh---ccccc--ceeeecccceeeeEeeccEEEEEEeeccc
Confidence 9999999999999999999976 3333 3444544433332 32223 34888999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907 79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH 137 (150)
Q Consensus 79 NEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~ 137 (150)
|||+++++||.++++|+.+|+ ++||+++++|+++++++||||||+|+++||| ..|+++
T Consensus 76 Nel~~~e~l~~~v~~l~~~~~-~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~ 134 (141)
T PF01217_consen 76 NELLLLEFLHRLVEVLDDYFG-NVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKR 134 (141)
T ss_dssp BHHHHHHHHHHHHHHHHHHHS-S-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHH
T ss_pred chHHHHHHHHHhhhhhhhhhc-cccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence 999999999999999999987 6999999999999999999999999999999 667643
No 3
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=223.08 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=110.8
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHH-HHHHHHHhhhccCCCCCccce----EEEeeCCeEEEEEEeccEEEEEEe
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLH-WRSFLVKLGADNLKGVKNEEL----LVASHKSVYIVYTVLGDVSIFVVG 74 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~-~e~~~~~l~~~~~~~~~~~~~----~i~~~~~~~iVyr~~~dL~~~vVg 74 (150)
||||++|+|++||+|++|||+| |.+.|++ ++...+.+++ |....|+. ..+-..+.+++||+||+|||..+.
T Consensus 1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~---R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv 77 (182)
T KOG0936|consen 1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSK---RPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV 77 (182)
T ss_pred CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHc---CCchHhhhhccccccCCccceeehheeeeEEEEEEE
Confidence 9999999999999999999999 7776665 4444455554 43334441 122234789999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907 75 KDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD 135 (150)
Q Consensus 75 ~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~ 135 (150)
+++||||+++|+||.|||+||+ |+++|||+|+++|+++++.+|+|+|+||+++||+ ..|.
T Consensus 78 D~sEsEL~iLDLIQvfVEtLDk-CF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv 138 (182)
T KOG0936|consen 78 DSSESELGILDLIQVFVETLDK-CFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIV 138 (182)
T ss_pred cCCcchhHHHHHHHHHHHHHHH-HHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHH
Confidence 9999999999999999999995 7788999999999999999999999999999999 7764
No 4
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-35 Score=219.47 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=112.7
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN 79 (150)
|||++||.|++||+|++|||+| +.++|+.+.+.++.+. .+ |.++.|+ ++++.+.++|||+||+|||.++.++++|
T Consensus 1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lI-s~-R~~ke~N--~~e~k~~kiVYrrYA~LyF~f~Vd~~dn 76 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELI-SA-RKPKESN--FIEGKNEKIVYRRYATLYFVFGVDNDDN 76 (152)
T ss_pred CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHH-Hc-CCchhcc--cccccCcEEEeeecCcEEEEEEEcCCCC
Confidence 8999999999999999999998 6777777777776655 23 4445555 8888899999999999987777777889
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD 135 (150)
Q Consensus 80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~ 135 (150)
||+++++||.|||+||+.| ++|||+|+++|+.+++.+|||+|.||.+.|+| ..+-
T Consensus 77 El~iL~lIh~FVE~lDr~F-gnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl 132 (152)
T COG5030 77 ELIILELIHNFVEILDRFF-GNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVL 132 (152)
T ss_pred cchHHHHHHHHHHHHHHHh-ccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHH
Confidence 9999999999999999755 66999999999999999999999999999999 5554
No 5
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-31 Score=197.75 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=108.2
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN 79 (150)
||+++++.++|||.|++|||.+ +..+|+.+++.+.+.+ -+ |.++.|+ +++++++++|||+||+|+|++...+++|
T Consensus 1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~-La-r~pk~cs--fie~kd~kvVyrryasl~f~~~v~~~dN 76 (145)
T KOG0934|consen 1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSV-LA-RKPKMCS--FIEYKDEKVVYRRYASLFFCVGVEDNDN 76 (145)
T ss_pred CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHH-Hh-CCccccc--chhccCceehhhhhhhEEEEEEEecCCc
Confidence 8999999999999999999998 7778877776554322 12 4445555 8999999999999999965554456999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc
Q 031907 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK 131 (150)
Q Consensus 80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd 131 (150)
||+.+|+||.+||.||++|+ +|||+|+++|+++++.+|||.+.+|-+.|+.
T Consensus 77 EL~~LE~IH~~vE~lDkYFg-~VCELDiiFNfekay~ILde~~~~g~~~e~~ 127 (145)
T KOG0934|consen 77 ELAILEFIHNYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLLGGEIQETS 127 (145)
T ss_pred hhhHHHHHHHHHHHHHHHhc-cceeeEEEEehHhHHHHHHHHhcCcchHhhh
Confidence 99999999999999998875 5999999999999999999999999998887
No 6
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.6e-29 Score=180.27 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=103.4
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN 79 (150)
||++++|.|++|++|+||||-| +.++++..++..+++.. . |..+..+ .+......++++|+|++|+|.+..+..+|
T Consensus 1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs-~-Rd~K~~~-~~~~~~~~~~~~rryagLyf~~~vd~tDn 77 (143)
T KOG0935|consen 1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVT-V-RDAKHTN-FVEFRNFKIIYRRRYAGLYFCICVDVTDN 77 (143)
T ss_pred CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHh-h-ccchhhh-heeeeeceEEEEEeeCCEEEEEEEecCCc
Confidence 9999999999999999999988 44555666666666552 2 3222222 13333344666679999977766677999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccc
Q 031907 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASF 134 (150)
Q Consensus 80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I 134 (150)
||+.++.||.|||+||..+ ++|||+|+++|+.||++++|||+-+|.|.||+ +.+
T Consensus 78 elayLe~IHlFVEvLd~fF-~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~v 132 (143)
T KOG0935|consen 78 ELAYLEHIHLFVEVLDEFF-HNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKV 132 (143)
T ss_pred hHHHHHHHHHHHHHHHHHh-ccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHH
Confidence 9999999999999999766 56999999999999999999999999999999 443
No 7
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-27 Score=179.56 Aligned_cols=132 Identities=21% Similarity=0.264 Sum_probs=118.6
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHH---------HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEE
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEE---------RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFV 72 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~---------~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~v 72 (150)
|+|+||+|+||+|+++|||.||+-. -+..+.+++++++|+|+.. . .|..+++..++|+++-|+.+|+
T Consensus 8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~--~--~Il~f~d~lV~~k~~~dv~~yi 83 (187)
T COG5541 8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDR--E--SILMFYDRLVMCKRLDDVLLYI 83 (187)
T ss_pred eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCc--c--ceeeEcceeeeeeeehhEEEEE
Confidence 6899999999999999999996532 2466678889998887752 2 3677889999999999999999
Q ss_pred EecCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907 73 VGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH 137 (150)
Q Consensus 73 Vg~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~ 137 (150)
|++-+|||..+.+++..+..||..+++...+|+.+.+|||.+++++||.||+|+|+||+ ..|+.+
T Consensus 84 v~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~r 149 (187)
T COG5541 84 VSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADR 149 (187)
T ss_pred ecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHh
Confidence 99999999999999999999999999988999999999999999999999999999999 889865
No 8
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.1e-11 Score=103.77 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=113.2
Q ss_pred CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE 80 (150)
|+-|..+++++||.++||.|. ...|.++|.++....+ . .+ ...++.+++.++++.||++...+|+.+|++.+.|-
T Consensus 2 vvlaa~i~t~~Gk~ivsRqf~--~Msr~RIEgLl~aFpk-L-v~-~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNI 76 (512)
T KOG2635|consen 2 VVLAASINTKTGKAIVSRQFR--EMSRSRIEGLLAAFPK-L-VS-AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNI 76 (512)
T ss_pred eEEEEEEeecCCceeeehHhH--hhhHHHHHHHHHHhHH-h-hc-cCCCccEEecccEEEEEEecccEEEEEEeccccch
Confidence 467889999999999999887 3567888988877664 2 11 22357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD 135 (150)
Q Consensus 81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~ 135 (150)
|..++.|+.|..+...+|.. ++|+.+++|......++||+|.-|+-...+ ++|-
T Consensus 77 leDl~TL~Lfskvipey~~s-lde~eI~~~~FelifAFDEivsLGyre~v~laQik 131 (512)
T KOG2635|consen 77 LEDLETLRLFSKVIPEYCSS-LDEKEILENAFELIFAFDEIVSLGYRENVNLAQIK 131 (512)
T ss_pred hhHHHHHHHHHHhchhhhhh-hhHHHHHHhhhhhhhccchhhhhcccccccHHHhh
Confidence 99999999999999999965 999999999999999999999999999988 8764
No 9
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.8e-09 Score=87.97 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=103.5
Q ss_pred CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE 80 (150)
||-++++.|..|..++.|.|..+.. +...+.|-..+. .+.+..+++...++...+|-+..+|++..|+.++.|=
T Consensus 1 misglfi~n~rGevlink~fr~dlk-rs~~diFRv~vi-----~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nv 74 (446)
T KOG0938|consen 1 MISGLFIYNLRGEVLINKTFRDDLK-RSIVDIFRVQVI-----NNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANV 74 (446)
T ss_pred CcceEEEEeccCcEEEehhhhhhhh-hhHHHHHHHhhh-----hccccCCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence 8999999999999999999976322 122222222222 1123345677788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcccc
Q 031907 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKAS 133 (150)
Q Consensus 81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~ 133 (150)
.+..+.+--+...+..+++ ...|..+-+|+-.++=.||||+|-|+...|++.
T Consensus 75 a~v~eFl~kl~avm~aYfg-k~~Eeaiknnf~lI~ElLDemld~G~pqnte~~ 126 (446)
T KOG0938|consen 75 AAVFEFLYKLDAVMNAYFG-KDREEAIKNNFVLIYELLDEMLDFGIPQNTEPN 126 (446)
T ss_pred hhHHHHHHHHHHHHHHHhc-ccchhhhhhceEeHHHHHHHHHhcCCCccCChh
Confidence 9999999999999998886 499999999999999999999999999998843
No 10
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.3e-07 Score=80.59 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=87.6
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-----CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907 1 MILAVLFANSEGNILVERFNGV-----PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK 75 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-----~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~ 75 (150)
||+++.+.|.+|+..+.|-... +... .-+|.+.++. + ..+...+..-.+...+.-+.+..+++..+
T Consensus 1 mi~siflidtsg~l~lek~~~g~t~~rsic~-~f~e~~~~~~-----~---~e~~ppvi~~p~hylfsv~~~~i~~~~~s 71 (418)
T KOG2740|consen 1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICD-YFFEDQSSDD-----D---LEHVPPVISTPHHYLFSVYRDLIFFCAVS 71 (418)
T ss_pred CeeEEEEEcCCchhhhhHhhCCceeeeehHH-HHHHhhhhcc-----c---cccCCceecCCceeeeeeeccCcEEEEEE
Confidence 9999999999999999888763 1111 1233322111 1 11122222223344555555665656555
Q ss_pred C-CccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccc
Q 031907 76 D-EYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASF 134 (150)
Q Consensus 76 ~-~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I 134 (150)
. +--.|...|+||.+++++..+|++ .++..+.+|++.++..||||||+|.-.-|++.|
T Consensus 72 t~e~pPL~~iefL~rv~dv~~eyFg~-~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~Ni 130 (418)
T KOG2740|consen 72 TVETPPLMVIEFLHRVVDVLLEYFGG-LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNI 130 (418)
T ss_pred eccCCChhHHHHHHHHHHHHHHHhcc-cCHhHhhcceeeHHHHHHHHHHcCCCcccChhH
Confidence 4 445899999999999999998875 999999999999999999999999988888654
No 11
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.2e-06 Score=73.54 Aligned_cols=128 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHH
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDEL 81 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL 81 (150)
+.|+.++|..|+.+.+|=|... -.....++|...++.+. ..+....++.+++...+|-+..++++.+.+..+-|=.
T Consensus 1 ~sa~fild~~G~~lisr~yr~d-v~~s~~~~F~~~l~~~e---~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~ 76 (424)
T KOG0937|consen 1 ASAVFILDHKGEVLISRDYRGD-VPMSSTEKFFRKLFEKE---EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA 76 (424)
T ss_pred CceEEEEcCCCcEeEeeccccc-CChhhhhhHHHHHhhhc---ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence 4689999999999999999763 12345666776655432 1233345777899999999999998877776799999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccc
Q 031907 82 ALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASF 134 (150)
Q Consensus 82 ~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I 134 (150)
.++++++.+++++..+|. .+.|..+..|+..++=.|||+.|=|+.+-|++.|
T Consensus 77 ~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~i 128 (424)
T KOG0937|consen 77 LVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEI 128 (424)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHH
Confidence 999999999999999997 5999999999999999999999999997777554
No 12
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=98.00 E-value=0.00025 Score=56.01 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=69.1
Q ss_pred CeEEEEEEeccEEEEEEecCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccccc
Q 031907 57 SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDG 136 (150)
Q Consensus 57 ~~~iVyr~~~dL~~~vVg~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I~~ 136 (150)
...+||+...++.|.+|++++||-++.-.+|+.++..|...++.-..-..++.+.|.+..+|+...-.|..+=.|.+.++
T Consensus 103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~k 182 (189)
T PF15001_consen 103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFVK 182 (189)
T ss_pred CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHHH
Confidence 56899999999999999999999999999999999999877754334467888999999999999999988877754443
No 13
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=95.87 E-value=0.29 Score=35.90 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=59.5
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHH--HHHHHHH----HHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907 2 ILAVLFANSEGNILVERFNGVPAE--ERLHWRS----FLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK 75 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~--~~~~~e~----~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~ 75 (150)
+.+++|.|++|-++..=..+...+ -+..+-. ...+..| +.-.++ ...+..|+++.++--....+++.++++
T Consensus 17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~K--L~lG~n-k~ii~~Y~~~qvv~~~~~pl~it~ias 93 (119)
T PF08923_consen 17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASK--LGLGKN-KSIIAYYDSYQVVQFNKLPLYITFIAS 93 (119)
T ss_dssp EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTT--SSS-SE-EEEEEEESSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccc--cCCCCc-eEEEEEeCCEEEEEEeCCCeEEEEEec
Confidence 579999999999988866554211 1122111 1112221 122122 244667899999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHH
Q 031907 76 DEYDELALAEVIFAITSAVKD 96 (150)
Q Consensus 76 ~~eNEL~l~evl~~~ve~L~~ 96 (150)
.+.|-=.++.+=+-+...+..
T Consensus 94 ~~aN~G~il~l~~~L~~~l~~ 114 (119)
T PF08923_consen 94 SNANTGLILSLEEELAPILNE 114 (119)
T ss_dssp TTS-HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHHHHHHHH
Confidence 999998888887777777764
No 14
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=94.84 E-value=0.64 Score=40.69 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=64.4
Q ss_pred eEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHHH
Q 031907 3 LAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELA 82 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL~ 82 (150)
|-++|+++.||+++++|=+ .+.-..+-+...++.. -... ...+..-+..+++++||-.=+-|+++.|....|.+-.
T Consensus 12 kh~fIlS~AGKPIysr~G~--e~~l~~~~g~~~aiiS-~~~~-~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~ 87 (415)
T PF03164_consen 12 KHFFILSSAGKPIYSRYGD--EDKLSSLMGVIQAIIS-FFQS-NGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQ 87 (415)
T ss_pred CeEEEECCCCceeEEecCC--hHHHHHHHHHHHHHHH-HHHh-CCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHH
Confidence 4589999999999999922 2222233333333321 0011 1123334557899999999999999888888888766
Q ss_pred HHHHHHHHHH---------HHHHHhCCC--CCHHHHHhhhhhH
Q 031907 83 LAEVIFAITS---------AVKDACGKI--PTERLFLDKYGKI 114 (150)
Q Consensus 83 l~evl~~~ve---------~L~~~~~~~--v~e~~ll~n~d~v 114 (150)
|..-|+.+.. .+++++.++ -+-+.++..-|..
T Consensus 88 l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~ 130 (415)
T PF03164_consen 88 LRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRF 130 (415)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHH
Confidence 6555544443 344444432 3455555555544
No 15
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=75.89 E-value=19 Score=23.50 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=38.4
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHH--HH-HH----HHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEecc-EEEEE
Q 031907 2 ILAVLFANSEGNILVERFNGVPAE--ER-LH----WRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGD-VSIFV 72 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~--~~-~~----~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~d-L~~~v 72 (150)
|++++++|++|.++.+ ..++.. ++ .. .-+.-.+..+ ... ....+...++.++..++.++.++ .++.+
T Consensus 15 v~~~~l~~~dG~~i~~--~~~~~~~~~~~aa~~a~~~~~~~~~~~-~l~-~~~~~~v~i~~~~~~i~i~~~~~~~~L~v 89 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIAS--SGIDDDDAEKLAAMAASLLAAAEKLAK-ELG-EGELEQVRIETEKGEIIITPVGDFYLLVV 89 (91)
T ss_dssp EEEEEEEETTSEEEEE--TSSSHHHHHHHHHHHHHHHHHHHHHHH-HHT-TSSEEEEEEEESSEEEEEEECSTCEEEEE
T ss_pred eeEEEEEcCCCCEEEE--ecCCcccHHHHHHHHHHHHHHHHHHHH-HhC-CCCcEEEEEEECCCEEEEEEcCCCEEEEE
Confidence 6789999999999999 333222 11 11 1111122221 112 22334566778888888899998 54443
No 16
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=48 Score=26.85 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=66.2
Q ss_pred CeeEEEEEe-CCCCEEEEecC-C-CCHHHHHHHHHHHHHhhhccCCC-CCccceEEEeeCCeEEEEEEeccEEEEEEecC
Q 031907 1 MILAVLFAN-SEGNILVERFN-G-VPAEERLHWRSFLVKLGADNLKG-VKNEELLVASHKSVYIVYTVLGDVSIFVVGKD 76 (150)
Q Consensus 1 MI~avlIln-~~G~r~lakyY-~-~~~~~~~~~e~~~~~l~~~~~~~-~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~ 76 (150)
||+.-+|.- ++|-++.+-+= + .+...-.++++..+.++++-... +..|. ++.+.+.+-|..-+++++.++++.
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~S---ietg~f~fHfli~~~Vcylvicd~ 77 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCS---IETGPFVFHFLIESGVCYLVICDK 77 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccc---cccCCeEEEEEecCCEEEEEEecC
Confidence 778777777 58888776653 1 23333345555666666532122 12222 345668999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHHhCCC
Q 031907 77 EYDELALAEVIFAITSAVKDACGKI 101 (150)
Q Consensus 77 ~eNEL~l~evl~~~ve~L~~~~~~~ 101 (150)
+.---....-|+.+.+-+++...++
T Consensus 78 ~yP~kLAF~YLedL~~EF~~~~~~~ 102 (216)
T KOG0862|consen 78 SYPRKLAFSYLEDLAQEFDKSYGKN 102 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9877777888888888888777654
No 17
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=68.98 E-value=23 Score=29.97 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=19.3
Q ss_pred eeEEEEEeCCCCEEEEecCCC
Q 031907 2 ILAVLFANSEGNILVERFNGV 22 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~ 22 (150)
+.+++++|.+|+++|+|.|++
T Consensus 104 ~d~vf~vd~~G~~vy~~~~d~ 124 (295)
T COG3322 104 LDGVFVVDPSGKLVYSKLVDQ 124 (295)
T ss_pred ccEEEEECCCCCEEEEeeecc
Confidence 368999999999999999987
No 18
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]
Probab=56.87 E-value=1.4e+02 Score=27.27 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCEEEEecCCC-----CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecC-
Q 031907 3 LAVLFANSEGNILVERFNGV-----PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKD- 76 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~-----~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~- 76 (150)
|-++|+..-||+++++|=+. +.+-.+....+ ++.+ ++. ..-+...+.++||-+=+-++++.+.-.
T Consensus 118 khifilseaGKPiyS~~gs~e~l~stmGv~~alISf----~q~~----~~~-i~si~a~g~k~vfl~kspl~LvA~s~t~ 188 (523)
T KOG0997|consen 118 KHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISF----FQVS----GLA-ITSIHAFGNKLVFLQKSPLLLVAVSRTS 188 (523)
T ss_pred ceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHH----HhhC----Cce-EEEEEecCceEEEEecCcEEEEEEcccc
Confidence 45899999999999999764 11223333333 3222 111 223446788999998888888777654
Q ss_pred -CccHHHHHHHHHHHHHHHH
Q 031907 77 -EYDELALAEVIFAITSAVK 95 (150)
Q Consensus 77 -~eNEL~l~evl~~~ve~L~ 95 (150)
+.+|| +.++.-.+...|+
T Consensus 189 ~Sa~qL-~~qL~~ly~QIlS 207 (523)
T KOG0997|consen 189 QSAAQL-LQQLLLLYCQILS 207 (523)
T ss_pred cCHHHH-HHHHHHHHHHHHH
Confidence 33444 3333333444443
No 19
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.98 E-value=1.7e+02 Score=23.61 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCc
Q 031907 10 SEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY 78 (150)
Q Consensus 10 ~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~e 78 (150)
..|.+++|+|=+.+..--.-.+.-+.+++ ++++ +..-..+|+|+.-|..-..+.+.+|.+++-
T Consensus 9 ARGTvvLaeft~~~gNf~sva~qiL~klp-----~~~n-~k~tYs~d~y~Fh~l~~dg~tylcvadds~ 71 (217)
T KOG0859|consen 9 ARGTVILAEFTEFSGNFSSIAAQILQKLP-----SSSN-SKFTYSCDGYTFHYLVEDGLTYLCVADDSA 71 (217)
T ss_pred ecceEEEEeeeeccCCHHHHHHHHHHhCC-----CCCC-CceEEecCCeEEEEEEeCCeEEEEEEeccc
Confidence 47999999997642211111122223333 2222 234556789999999999999999988743
No 20
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=39.05 E-value=59 Score=18.05 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHH
Q 031907 84 AEVIFAITSAVKDACGKIPTERLFLDKYGKICL 116 (150)
Q Consensus 84 ~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l 116 (150)
.++.+.++..++..+.++-++..+..-+++++-
T Consensus 4 C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 4 CDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 467778888899999888999999988887763
No 21
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.74 E-value=80 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.5
Q ss_pred eEEEEEeCCCCEEEEecCCC
Q 031907 3 LAVLFANSEGNILVERFNGV 22 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~ 22 (150)
-+.+|+|++|+.++..+|..
T Consensus 118 r~~fiID~~G~I~~~~~~~~ 137 (203)
T cd03016 118 RAVFIIDPDKKIRLILYYPA 137 (203)
T ss_pred eEEEEECCCCeEEEEEecCC
Confidence 36899999999999999864
No 22
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=29.45 E-value=2.3e+02 Score=20.85 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=48.7
Q ss_pred eeEEEEEeCCCCEEEEecCCCC---------HHHHHHHHHHH---HHhhhccCCC-------CCccceEEEeeCCeEE-E
Q 031907 2 ILAVLFANSEGNILVERFNGVP---------AEERLHWRSFL---VKLGADNLKG-------VKNEELLVASHKSVYI-V 61 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~---------~~~~~~~e~~~---~~l~~~~~~~-------~~~~~~~i~~~~~~~i-V 61 (150)
|.++.|+|+.|..++.|=|..+ .++++.+=..+ ++++++- .+ ...+...-+..+.+++ .
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~kl-sp~~~~~~~~~~~g~~~~~T~~yklh~ 79 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKL-SPVDSKPNEPGSSGFESFETDTYKLHC 79 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT--SSSSSS-SSS--SEEEEEESS-EEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHh-CCCCcccccccceeEEEEEeCCEEEEE
Confidence 6789999999999999999862 12333333322 2233221 11 0112344556667755 4
Q ss_pred EEEeccEEEEEEecCCccHHHHHHHHHHHHHHHHH-HhCCC
Q 031907 62 YTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKD-ACGKI 101 (150)
Q Consensus 62 yr~~~dL~~~vVg~~~eNEL~l~evl~~~ve~L~~-~~~~~ 101 (150)
|..-.++.|+++.+.+-.- ...++++-+.+..-+ +.++.
T Consensus 80 ~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNP 119 (142)
T PF04099_consen 80 FETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNP 119 (142)
T ss_dssp EE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-T
T ss_pred EEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCC
Confidence 5667778898888875421 233344555555433 34443
No 23
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=28.60 E-value=50 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=25.2
Q ss_pred CCCHHHHHhhh----hhHHHHHhhhhcCCEEEEcc
Q 031907 101 IPTERLFLDKY----GKICLCLDEIVWKTLSYTTK 131 (150)
Q Consensus 101 ~v~e~~ll~n~----d~v~l~lDEiI~~GiI~Etd 131 (150)
.+....|..++ +.|--++|++++.|+|..|-
T Consensus 65 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 65 GVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp TEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESS
T ss_pred cccHHHHHHHhCcCHHHHHHHHHHHHhCCeEeccc
Confidence 36666776654 78999999999999999874
No 24
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=28.30 E-value=59 Score=23.46 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=17.8
Q ss_pred eeEEEEEeCCCCEEE--EecCCC
Q 031907 2 ILAVLFANSEGNILV--ERFNGV 22 (150)
Q Consensus 2 I~avlIln~~G~r~l--akyY~~ 22 (150)
+.+++++|.+|++++ ++.++.
T Consensus 50 ~d~~~~~d~~g~~~~~~~~~~~~ 72 (161)
T PF05228_consen 50 LDLIFILDPDGRVLYSSSKGYDF 72 (161)
T ss_pred ccEEEEEcCCCCEEEEeccCccc
Confidence 468999999999999 777765
No 25
>PRK13599 putative peroxiredoxin; Provisional
Probab=26.81 E-value=96 Score=24.51 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.0
Q ss_pred eeEEEEEeCCCCEEEEecCCC
Q 031907 2 ILAVLFANSEGNILVERFNGV 22 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~ 22 (150)
+-+++|+|.+|+.+++-+|..
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~ 139 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQ 139 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCC
Confidence 357899999999999988764
No 26
>PF14903 WG_beta_rep: WG containing repeat
Probab=26.38 E-value=76 Score=16.88 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEeCCCCEEEEecCCC
Q 031907 7 FANSEGNILVERFNGV 22 (150)
Q Consensus 7 Iln~~G~r~lakyY~~ 22 (150)
++|.+|+.++.--|+.
T Consensus 3 ~id~~G~~vi~~~yd~ 18 (35)
T PF14903_consen 3 YIDKNGKIVIPPKYDE 18 (35)
T ss_pred EEeCCCCEEEEccccC
Confidence 5789999998877775
No 27
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=25.57 E-value=40 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=19.8
Q ss_pred hhhhcCCEEEEcc---cccccCCCcceE
Q 031907 119 DEIVWKTLSYTTK---ASFDGHGGQDFF 143 (150)
Q Consensus 119 DEiI~~GiI~Etd---~~I~~~~~~~~~ 143 (150)
=-++--|-|.||| +.|.++-|||=.
T Consensus 92 ~niitKGaIIetd~g~A~VTsrPgQdG~ 119 (127)
T TIGR00307 92 RNVITKGAIVETDIGYARVTSRPGQDGV 119 (127)
T ss_pred cCcEecceEEEEeeeEEEEecCCCcCce
Confidence 3456678888888 889999999944
No 28
>PRK13190 putative peroxiredoxin; Provisional
Probab=24.04 E-value=1.1e+02 Score=23.80 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=18.4
Q ss_pred eeEEEEEeCCCCEEEEecCCC
Q 031907 2 ILAVLFANSEGNILVERFNGV 22 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~ 22 (150)
+-+.+|+|++|+.++..+|..
T Consensus 117 ~p~~fiId~~G~I~~~~~~~~ 137 (202)
T PRK13190 117 VRGVFIIDPNQIVRWMIYYPA 137 (202)
T ss_pred EeEEEEECCCCEEEEEEEeCC
Confidence 357899999999999998876
No 29
>PRK04049 30S ribosomal protein S8e; Validated
Probab=22.40 E-value=51 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHhhhhcCCEEEEcc---cccccCCCcceE
Q 031907 106 LFLDKYGKICLCLDEIVWKTLSYTTK---ASFDGHGGQDFF 143 (150)
Q Consensus 106 ~ll~n~d~v~l~lDEiI~~GiI~Etd---~~I~~~~~~~~~ 143 (150)
++++|-.--.++==-+|--|-|.||+ +.|.++-|||=-
T Consensus 79 ~Vv~N~aN~~yvRrniitKGaII~te~G~A~VTSRPGQdG~ 119 (127)
T PRK04049 79 TVVENPANPHYARRNIITKGAIIETELGKAKVTSRPGQDGV 119 (127)
T ss_pred EEEECCCCHHHhhcCCEecceEEEeccceEEEecCCCcCce
Confidence 34444444444444567788888998 889999999943
No 30
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.94 E-value=31 Score=21.47 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=9.1
Q ss_pred HHhhhhcCCEE
Q 031907 117 CLDEIVWKTLS 127 (150)
Q Consensus 117 ~lDEiI~~GiI 127 (150)
+|||+|..|.|
T Consensus 18 tLDeli~~~~I 28 (49)
T PF02268_consen 18 TLDELIQEGKI 28 (49)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCCC
Confidence 68999998865
No 31
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=20.66 E-value=3.6e+02 Score=19.95 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=53.7
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHHHHH-----HHHHH---HHhhhccCCCCCccceEEEeeCCe-EEEEEEeccEEEEE
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEERLH-----WRSFL---VKLGADNLKGVKNEELLVASHKSV-YIVYTVLGDVSIFV 72 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~~~~-----~e~~~---~~l~~~~~~~~~~~~~~i~~~~~~-~iVyr~~~dL~~~v 72 (150)
|++++|+|+.|.-++-|=|...+.+... +-.-+ ..+..+...-...+-...++.++. .-+||..-++.|+.
T Consensus 3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~ 82 (134)
T COG5122 3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVF 82 (134)
T ss_pred eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEE
Confidence 7899999999999999999652211100 00011 111111111011122345555555 55889999998988
Q ss_pred EecC-CccHHHHHHHHHHHHHHHHHHhCCC
Q 031907 73 VGKD-EYDELALAEVIFAITSAVKDACGKI 101 (150)
Q Consensus 73 Vg~~-~eNEL~l~evl~~~ve~L~~~~~~~ 101 (150)
+..+ ..|-+.- ++-+++-.+++.-++
T Consensus 83 ~~~k~t~na~~q---l~kiY~lYsdYV~kn 109 (134)
T COG5122 83 VAEKRTVNALFQ---LQKIYSLYSDYVTKN 109 (134)
T ss_pred EecCCchhHHHH---HHHHHHHHHHHhhcC
Confidence 8855 4453332 555666665554443
No 32
>COG3455 Type VI protein secretion system component VasF [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.62 E-value=3e+02 Score=22.87 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=36.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHhhhhhHHHHHhhhhcC
Q 031907 77 EYDELALAEVIFAITSAVKDACGK-IPTERLFLDKYGKICLCLDEIVWK 124 (150)
Q Consensus 77 ~eNEL~l~evl~~~ve~L~~~~~~-~v~e~~ll~n~d~v~l~lDEiI~~ 124 (150)
.+|.-.+..-+-.-.+..+..+.+ ++.+.+++.=-..+|.++||++.+
T Consensus 61 ~~~~~~lr~~~v~~i~~fe~~l~~ag~~~e~v~~arY~lCa~lDE~vl~ 109 (262)
T COG3455 61 EANPEALRQRLVAEIEAFEQALQQAGYSPEDVMAARYALCALLDETVLG 109 (262)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 457777776666666666665554 688888888888999999999975
Done!