Query 031907
Match_columns 150
No_of_seqs 105 out of 433
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 4.3E-36 1.5E-40 227.5 15.3 130 1-137 12-145 (153)
2 2vgl_S AP-2 complex subunit si 100.0 2.3E-33 7.8E-38 209.1 17.5 130 1-135 1-132 (142)
3 1w63_Q Adapter-related protein 100.0 1E-32 3.4E-37 209.4 17.7 129 1-134 1-131 (158)
4 2vgl_M AP-2 complex subunit MU 99.9 4.8E-27 1.6E-31 201.9 16.6 129 1-135 1-130 (435)
5 1w63_M Adaptor-related protein 99.9 1.2E-26 3.9E-31 198.9 11.8 131 1-136 2-133 (423)
6 2nut_C Vesicle-trafficking pro 95.0 0.82 2.8E-05 34.5 13.2 97 1-99 2-101 (196)
7 3cpt_A Mitogen-activated prote 93.5 1.6 5.6E-05 32.0 11.3 91 2-95 38-134 (143)
8 3bw6_A Synaptobrevin homolog Y 88.8 4.6 0.00016 29.0 9.6 94 2-99 7-110 (144)
9 4b93_A Vesicle-associated memb 72.1 28 0.00095 25.9 10.1 86 3-97 5-90 (189)
10 2j3t_C Trafficking protein par 70.8 26 0.00089 25.0 11.4 93 1-96 2-107 (145)
11 2vx8_A Nucleoporin-like protei 53.8 63 0.0021 23.7 12.1 82 12-100 54-135 (169)
12 3cue_C Transport protein parti 49.4 72 0.0025 23.1 10.4 93 1-96 2-113 (159)
13 3kyq_A YKT6, synaptobrevin hom 48.2 84 0.0029 23.5 11.4 93 2-98 4-106 (199)
14 1vet_B P14, late endosomal/lys 41.1 86 0.003 21.6 13.9 97 2-98 19-119 (125)
15 4afi_A AP-3 complex subunit de 38.1 1.2E+02 0.004 22.3 10.7 88 2-98 56-143 (173)
16 2wmm_A Chromosome partition pr 30.3 39 0.0013 25.0 3.0 21 3-23 114-134 (162)
17 3drn_A Peroxiredoxin, bacterio 22.8 1.5E+02 0.0051 20.0 5.0 36 3-38 112-148 (161)
18 3l7h_A RE64145P, roadblock; LC 22.6 1.8E+02 0.006 19.4 6.9 18 2-19 18-35 (97)
19 2kcp_A 30S ribosomal protein S 22.4 33 0.0011 23.4 1.3 20 123-142 59-81 (98)
20 3a0s_A Sensor protein; PAS-fol 22.3 68 0.0023 17.8 2.7 16 2-17 2-17 (96)
21 3sbc_A Peroxiredoxin TSA1; alp 21.7 1.3E+02 0.0044 22.9 4.7 20 3-22 144-163 (216)
22 2fh5_A Signal recognition part 20.5 1.7E+02 0.0058 21.9 5.1 69 1-76 10-80 (185)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=4.3e-36 Score=227.52 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=112.8
Q ss_pred CeeEEEEEeCCCCEEEEecCCC---CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCC
Q 031907 1 MILAVLFANSEGNILVERFNGV---PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~---~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~ 77 (150)
||+|++|+|++|++|++|||.+ +.++|+++++.+.+.. .|. ++ +++.++++++|||++++|+|+++++.+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~---~r~--~~--~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT---HRT--DS--EIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH---SSC--CC--CEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCC--CC--CEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 8999999999999999999997 4456666665443333 232 23 477789999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907 78 YDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH 137 (150)
Q Consensus 78 eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~ 137 (150)
+|||+++++||.++++|+.+|++++||+++++||++++.+||||+|+|+++||| ..|.++
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~ 145 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHR 145 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHH
Confidence 999999999999999999999778999999999999999999999999999999 666544
No 2
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=2.3e-33 Score=209.11 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=110.6
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN 79 (150)
||+|++|+|++|++|++|||.+ +.+++++..+...+... + +.++ .++++.++++++|||++++|+|+++++.++|
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~-~-~~~~--~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N 76 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT-V-RDAK--HTNFVEFRNFKIIYRRYAGLYFCICVDVNDN 76 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH-T-CCTT--SCSEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh-c-CCCC--CCCEEEECCEEEEEEEECCEEEEEEeCCCCC
Confidence 9999999999999999999997 55555544443333332 2 3223 3458899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD 135 (150)
Q Consensus 80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~ 135 (150)
||+++++||.++++|+.+|+ ++||+++++|+++++.+||||+|+|+++||+ +.|.
T Consensus 77 ~l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il 132 (142)
T 2vgl_S 77 NLAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVL 132 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 99999999999999999885 5999999999999999999999999999997 7664
No 3
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1e-32 Score=209.43 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=111.4
Q ss_pred CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN 79 (150)
||+|++|+|++|++|++|||.+ +..+|+++++...++.. + +.++. ++++.++++++|||++++|+|+++++.++|
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~-~-~~~~~--~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~N 76 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVL-A-RKPKM--CSFLEWRDLKVVYKRYASLYFCCAIEGQDN 76 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHH-T-SCSSS--CSEEEETTEEEEEEEETTEEEEEEECSSSC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHh-c-cCCCC--CCeEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 9999999999999999999998 55666666654444432 1 22223 458899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccc
Q 031907 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASF 134 (150)
Q Consensus 80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I 134 (150)
||+++++||.++++|+.+|+ ++||+++++|+++++.+||||+|+|+++||| ..|
T Consensus 77 el~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l 131 (158)
T 1w63_Q 77 ELITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSV 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHH
Confidence 99999999999999999886 5999999999999999999999999999999 444
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.95 E-value=4.8e-27 Score=201.91 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=110.8
Q ss_pred CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE 80 (150)
||+|++|+|++|+++++|||.+... |...+.|.+.+..+ +..+ .+.++.++++++||+++++|+|+++++.++||
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~--~~~~--~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHA--RQQV--RSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTC--SSCC--CCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhcc--ccCC--CCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 9999999999999999999997222 44556666665532 2112 34588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD 135 (150)
Q Consensus 81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~ 135 (150)
|+++|+||.++++|+.+|+ ++||+++++||++++.+||||+|+|+++||| ..|.
T Consensus 76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~ 130 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALK 130 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHH
Confidence 9999999999999999997 5999999999999999999999999999999 5444
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.94 E-value=1.2e-26 Score=198.93 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=110.1
Q ss_pred CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE 80 (150)
||+|++|+|++|+++++|||.+..+ +...+.|.+.+..++ ...+. +.++.++++++||+++++|+|+++++.++||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~-~~~~~--~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE-EEGML--SPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH-HTSCC--CSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred ceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc-ccCCC--CCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 8999999999999999999997221 123455665555332 11122 4588899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccccc
Q 031907 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDG 136 (150)
Q Consensus 81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~ 136 (150)
|+++|+||.++++|+.+| +++||+++++||++++.+||||+|+|+++||| ..|..
T Consensus 78 l~~le~L~~~v~~l~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~ 133 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYF-KELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQE 133 (423)
T ss_dssp HHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTT
T ss_pred HHHHHHHHHHHHHHHHHH-hhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHH
Confidence 999999999999999988 56999999999999999999999999999999 55543
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.00 E-value=0.82 Score=34.49 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=64.9
Q ss_pred CeeEEEEEeCCCCEEEEecCCCC---HHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCC
Q 031907 1 MILAVLFANSEGNILVERFNGVP---AEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~---~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~ 77 (150)
||+..+|.-.....+|+.+++.+ ..++..+....+.+.++. ..... .-..+.++++.+-|-.-.++.++++++.+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki-~~~~~-~r~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKL-NEQSP-TRCTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHC-CTTSC-SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhc-CCCCC-CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 88999998875567777787742 223445555555666443 21111 22345678999999998999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhC
Q 031907 78 YDELALAEVIFAITSAVKDACG 99 (150)
Q Consensus 78 eNEL~l~evl~~~ve~L~~~~~ 99 (150)
+..-.....|+-+.+-...-++
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcc
Confidence 9888777777766665555444
No 7
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=93.48 E-value=1.6 Score=32.02 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=58.2
Q ss_pred eeEEEEEeCCCCEEEEecCCC-CHH-HHHHHHHHH----HHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907 2 ILAVLFANSEGNILVERFNGV-PAE-ERLHWRSFL----VKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK 75 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~-~~~-~~~~~e~~~----~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~ 75 (150)
+++++|.|++|-+++.-..+. |.. -|..+..-. .+..| +.-.++. .-+..|+++.+|--...-+++.++++
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sK--LglGknk-sII~~Y~~yqvVq~n~~Plvit~Ias 114 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSK--LGLSKNK-SIICYYNTYQVVQFNRLPLVVSFIAS 114 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHH--HTCCCEE-EEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhh--cCCCCCc-eEEEEecCeEEEEEecCCEEEEEEec
Confidence 589999999999999988876 321 122222211 12222 1111222 23456788888877899999999999
Q ss_pred CCccHHHHHHHHHHHHHHHH
Q 031907 76 DEYDELALAEVIFAITSAVK 95 (150)
Q Consensus 76 ~~eNEL~l~evl~~~ve~L~ 95 (150)
.+.|-=+++.+=+-+...|.
T Consensus 115 ~~aNtG~Il~Le~~L~p~l~ 134 (143)
T 3cpt_A 115 SSANTGLIVSLEKELAPLFE 134 (143)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHhhhHHHHHHHHH
Confidence 99998766665555555444
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=88.80 E-value=4.6 Score=28.97 Aligned_cols=94 Identities=11% Similarity=0.019 Sum_probs=61.0
Q ss_pred eeEEEEEeCCC--CEEEEecCCCC---HHHHHHHHHHH----HHhhhccCCCCCccceEEEeeCCeEEEEE-EeccEEEE
Q 031907 2 ILAVLFANSEG--NILVERFNGVP---AEERLHWRSFL----VKLGADNLKGVKNEELLVASHKSVYIVYT-VLGDVSIF 71 (150)
Q Consensus 2 I~avlIln~~G--~r~lakyY~~~---~~~~~~~e~~~----~~l~~~~~~~~~~~~~~i~~~~~~~iVyr-~~~dL~~~ 71 (150)
|-+++|+-..+ ..+|+..++-+ .-+|...+++. +++.+|. .. +. -.-+.++++.+-|- +-.++.+.
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~-~~--~~-R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRT-GA--GQ-RQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHC-CT--TE-EEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhC-CC--Cc-eEEEEeCCEEEEEEEecCCEEEE
Confidence 55666776543 67899999862 23444444332 3444433 22 22 23456788888777 77899999
Q ss_pred EEecCCccHHHHHHHHHHHHHHHHHHhC
Q 031907 72 VVGKDEYDELALAEVIFAITSAVKDACG 99 (150)
Q Consensus 72 vVg~~~eNEL~l~evl~~~ve~L~~~~~ 99 (150)
++++.++-.-.....|+-+.+-....+.
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 9999999988888887777776655443
No 9
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=72.06 E-value=28 Score=25.87 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=51.7
Q ss_pred eEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHHH
Q 031907 3 LAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELA 82 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL~ 82 (150)
...+|. .|.++||.|=..+..-....+ .+.++- .+ .+ +-..+.++++.+-|-.-.++.++++++.+...-.
T Consensus 5 lYa~VA--rg~~iLae~t~~~gnf~~ia~----~iL~ki-p~-~~-~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~ 75 (189)
T 4b93_A 5 LFAVVA--RGTTILAKHAWCGGNFLEVTE----QILAKI-PS-EN-NKLTYSHGNYLFHYICQDRIVYLCITDDDFERSR 75 (189)
T ss_dssp EEEEEE--ETTEEEEEEESSEECHHHHHH----HHHTTC-CS-SS-EEEEEEETTEEEEEEEETTEEEEEEEETTSCHHH
T ss_pred EEEEEE--eCCEEEEeCCCCCCCHHHHHH----HHHHhC-CC-CC-CeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHH
Confidence 334444 389999998444221111222 223221 11 12 2334568899999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHH
Q 031907 83 LAEVIFAITSAVKDA 97 (150)
Q Consensus 83 l~evl~~~ve~L~~~ 97 (150)
....|.-+.+-....
T Consensus 76 af~fL~~i~~eF~~~ 90 (189)
T 4b93_A 76 AFSFLNEVKKRFQTT 90 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 666665555544433
No 10
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=70.78 E-value=26 Score=25.02 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=54.9
Q ss_pred CeeEEEEEeCCCCEEEEecCCCC-------HHHHHHHHHHHH---Hhhhcc-CCCCCccceEEEeeCCeE-EEEEEeccE
Q 031907 1 MILAVLFANSEGNILVERFNGVP-------AEERLHWRSFLV---KLGADN-LKGVKNEELLVASHKSVY-IVYTVLGDV 68 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~-------~~~~~~~e~~~~---~l~~~~-~~~~~~~~~~i~~~~~~~-iVyr~~~dL 68 (150)
||.++.|+|++|.+++.+=|.++ .++.+..-..++ .+.++- +.. .......+..++++ --|.....+
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~-~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLD-MKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSC-CSSCEEEEECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCC-CCCceEEEecCCEEEEEEEcCCCC
Confidence 48899999999999999988652 233333322222 233221 121 11223444566664 456666789
Q ss_pred EEEEEecCCccHHHHHHHHHHHH-HHHHH
Q 031907 69 SIFVVGKDEYDELALAEVIFAIT-SAVKD 96 (150)
Q Consensus 69 ~~~vVg~~~eNEL~l~evl~~~v-e~L~~ 96 (150)
.|+++.+..+++ +-++++-+. +..-+
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 999998876554 446666666 44444
No 11
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=53.84 E-value=63 Score=23.69 Aligned_cols=82 Identities=11% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHHHHHHHHHHHH
Q 031907 12 GNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAIT 91 (150)
Q Consensus 12 G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL~l~evl~~~v 91 (150)
|.++|+.|-+.+.. +....+.+.++... .+ .-..+.++++.+-|..-.++.+++|.+.+..--.....|.-+.
T Consensus 54 G~~VLae~t~~~gn----f~~iak~ll~kl~~--~~-~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~ 126 (169)
T 2vx8_A 54 GTTILAKHAWCGGN----FLEVTEQILAKIPS--EN-NKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 126 (169)
T ss_dssp TTEEEEEEESSCBS----HHHHHHHHHTTSCS--SC-EEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCEEEEEeccCCCC----HHHHHHHHHhhCCC--CC-CceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHH
Confidence 67899988554321 12223344543312 11 1234567899999998899999999998888777777777777
Q ss_pred HHHHHHhCC
Q 031907 92 SAVKDACGK 100 (150)
Q Consensus 92 e~L~~~~~~ 100 (150)
+-....+++
T Consensus 127 ~eF~~~y~~ 135 (169)
T 2vx8_A 127 KRFQTTYGS 135 (169)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhh
Confidence 776665543
No 12
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=49.41 E-value=72 Score=23.08 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=49.6
Q ss_pred CeeEEEEEeCCCCEEEEecCCCC-------------HHHHHHHHHHH---HHhhhccCCCCC-ccceEEEeeCCeEE-EE
Q 031907 1 MILAVLFANSEGNILVERFNGVP-------------AEERLHWRSFL---VKLGADNLKGVK-NEELLVASHKSVYI-VY 62 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~-------------~~~~~~~e~~~---~~l~~~~~~~~~-~~~~~i~~~~~~~i-Vy 62 (150)
||.++.|+|++|+.++.|=|.++ .++.+..-..+ ..+.++- .+.. .+....+..+.+++ -|
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kl-s~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKL-SKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHS-CCSSSCCCEEEEECSSCBEEEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEeeCCEEEEEE
Confidence 48899999999999999877531 11111111111 2223221 2211 12233334444543 45
Q ss_pred EEeccEEEEEEecCCccHHHHHHHHHHHHH-HHHH
Q 031907 63 TVLGDVSIFVVGKDEYDELALAEVIFAITS-AVKD 96 (150)
Q Consensus 63 r~~~dL~~~vVg~~~eNEL~l~evl~~~ve-~L~~ 96 (150)
..-..+.|+++.+..++++ -++++.+.+ ..-+
T Consensus 81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVK 113 (159)
T ss_dssp CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHH
Confidence 5566899988888766554 355555554 4444
No 13
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=48.25 E-value=84 Score=23.54 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=58.6
Q ss_pred eeEEEEEeCCCC--EEEEecCCC---CHHHHHHHHHH---HH-HhhhccCCCCCccceEEEeeCCeEEE-EEEeccEEEE
Q 031907 2 ILAVLFANSEGN--ILVERFNGV---PAEERLHWRSF---LV-KLGADNLKGVKNEELLVASHKSVYIV-YTVLGDVSIF 71 (150)
Q Consensus 2 I~avlIln~~G~--r~lakyY~~---~~~~~~~~e~~---~~-~l~~~~~~~~~~~~~~i~~~~~~~iV-yr~~~dL~~~ 71 (150)
|-++.|+.+.|. .+++.-|+- +.-+|....++ .. .+.++. +.+. -..+.++++.+- |..-.++.+.
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~---~~~~-r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERS---AKGS-RASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTS---CTTE-EEEEECSSEEEEEEECTTSEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcC---CCCC-eEEEEeCCEEEEEEEecCCEEEE
Confidence 567888876554 356777775 33345444443 32 455433 2222 234557888876 8888999999
Q ss_pred EEecCCccHHHHHHHHHHHHHHHHHHh
Q 031907 72 VVGKDEYDELALAEVIFAITSAVKDAC 98 (150)
Q Consensus 72 vVg~~~eNEL~l~evl~~~ve~L~~~~ 98 (150)
++++.+...-.....|+-+.+-...-+
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~ 106 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQV 106 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999988776666666665554444
No 14
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=41.12 E-value=86 Score=21.63 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=58.2
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHHH-HHHHHHHHHhhhcc---CCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCC
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEER-LHWRSFLVKLGADN---LKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~~-~~~e~~~~~l~~~~---~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~ 77 (150)
|++.++++++|-.+.+.-.++...++ ...-+-...+.++. .-....-+..+++.++-.+.-.+.++.++.|+++++
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 57899999999999987765533333 23333333333221 011122345677776666666666889999998887
Q ss_pred ccHHHHHHHHHHHHHHHHHHh
Q 031907 78 YDELALAEVIFAITSAVKDAC 98 (150)
Q Consensus 78 eNEL~l~evl~~~ve~L~~~~ 98 (150)
-|-=.+.-=++.+++-|..-+
T Consensus 99 a~lGlv~~~m~~lv~~L~~~l 119 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEEPL 119 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHCC-
T ss_pred CChHHHHHHHHHHHHHHhhhh
Confidence 665455555566666665433
No 15
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=38.13 E-value=1.2e+02 Score=22.29 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=52.0
Q ss_pred eeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHH
Q 031907 2 ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDEL 81 (150)
Q Consensus 2 I~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL 81 (150)
|...+|.. |.++||.|=..+..-.... +++.++. .. .+ +-..+.++++.+-|-.-.++.+++|++.+..--
T Consensus 56 I~Ya~VAr--g~tiLAE~t~~~gnf~~va----~~iL~ki-p~-~~-~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr 126 (173)
T 4afi_A 56 ILFAVVAR--GTTILAKHAWCGGNFLEVT----EQILAKI-PS-EN-NKLTYSHGNYLFHYICQDRIVYLCITDDDFERS 126 (173)
T ss_dssp EEEEEEEE--TTEEEEEEESSCCCHHHHH----HHHHTTS-CS-SS-EEEEEEETTEEEEEEEETTEEEEEEEETTSCHH
T ss_pred EEEEEEEC--CCEEEEEccCCCCCHHHHH----HHHHHhC-CC-CC-CeEEEEECCEEEEEEEECCEEEEEEECCccChh
Confidence 33444443 8899999865432111222 2333322 11 11 223456789999998889999999999888766
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031907 82 ALAEVIFAITSAVKDAC 98 (150)
Q Consensus 82 ~l~evl~~~ve~L~~~~ 98 (150)
.....|.-+.+-....+
T Consensus 127 ~aF~FLedI~~eF~~~y 143 (173)
T 4afi_A 127 RAFSFLNEVKKRFQTTY 143 (173)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 65555555555444433
No 16
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=30.30 E-value=39 Score=25.03 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCEEEEecCCCC
Q 031907 3 LAVLFANSEGNILVERFNGVP 23 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~~ 23 (150)
+++++..++.+.|+|||-+.|
T Consensus 114 ~av~V~~~~rq~RySr~P~~P 134 (162)
T 2wmm_A 114 KAVVVKIADRQWRYSRFPEVP 134 (162)
T ss_dssp TEEEEEEETTEEEEEECCSSC
T ss_pred CceEEEecCceeeeccCCCcc
Confidence 689999999999999998865
No 17
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=22.84 E-value=1.5e+02 Score=20.02 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCEEEEecCC-CCHHHHHHHHHHHHHhh
Q 031907 3 LAVLFANSEGNILVERFNG-VPAEERLHWRSFLVKLG 38 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~-~~~~~~~~~e~~~~~l~ 38 (150)
-+.+++|++|+.+..-... .+.+...++.+.++++-
T Consensus 112 P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~ 148 (161)
T 3drn_A 112 RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIK 148 (161)
T ss_dssp CEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhh
Confidence 4689999999988764432 23333344444555554
No 18
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=22.59 E-value=1.8e+02 Score=19.39 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.3
Q ss_pred eeEEEEEeCCCCEEEEec
Q 031907 2 ILAVLFANSEGNILVERF 19 (150)
Q Consensus 2 I~avlIln~~G~r~laky 19 (150)
+.+++|+|++|.++-+.+
T Consensus 18 V~G~iI~n~~G~pirst~ 35 (97)
T 3l7h_A 18 VVGTIVVNNEGIPVKSTL 35 (97)
T ss_dssp EEEEEEEETTSCEEEESS
T ss_pred ceEEEEECCCCCEeEEeC
Confidence 579999999999987653
No 19
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=22.44 E-value=33 Score=23.45 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=15.2
Q ss_pred cCCEEEEcc---cccccCCCcce
Q 031907 123 WKTLSYTTK---ASFDGHGGQDF 142 (150)
Q Consensus 123 ~~GiI~Etd---~~I~~~~~~~~ 142 (150)
-.|-|.||| +.|+++-|||=
T Consensus 59 tKGaII~~d~GkA~VTSRPGQdG 81 (98)
T 2kcp_A 59 TRGAVVETNLGNVRVTSRPGQDG 81 (98)
T ss_dssp CTTCEEEESSSEEEECSCTTGGG
T ss_pred EeeeEEEecCcEEEEecCCCCcc
Confidence 456666776 88999999983
No 20
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=22.29 E-value=68 Score=17.80 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.1
Q ss_pred eeEEEEEeCCCCEEEE
Q 031907 2 ILAVLFANSEGNILVE 17 (150)
Q Consensus 2 I~avlIln~~G~r~la 17 (150)
=.+++++|.+|+.+++
T Consensus 2 ~~~i~~~d~~g~i~~~ 17 (96)
T 3a0s_A 2 ETAIITLSKDGRITEW 17 (96)
T ss_dssp CCEEEEEETTSBEEEE
T ss_pred CceEEEEcCCCCEeeh
Confidence 4589999999998764
No 21
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=21.70 E-value=1.3e+02 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCEEEEecCCC
Q 031907 3 LAVLFANSEGNILVERFNGV 22 (150)
Q Consensus 3 ~avlIln~~G~r~lakyY~~ 22 (150)
.+++|+|.+|+.|+.-+|+.
T Consensus 144 R~tFiID~~G~Ir~~~v~~~ 163 (216)
T 3sbc_A 144 RGLFIIDPKGVIRHITINDL 163 (216)
T ss_dssp EEEEEECTTSBEEEEEEECT
T ss_pred eEEEEECCCCeEEEEEEcCC
Confidence 57999999999999999985
No 22
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=20.49 E-value=1.7e+02 Score=21.94 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred CeeEEEEEeCCCCEEEEecCCCCH-HHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEE-EEEecC
Q 031907 1 MILAVLFANSEGNILVERFNGVPA-EERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSI-FVVGKD 76 (150)
Q Consensus 1 MI~avlIln~~G~r~lakyY~~~~-~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~-~vVg~~ 76 (150)
|+..+.|+++.|=++.+ |.++. ....-+-+.++.++=.. |+. + ..+.++++.+-|+...++-+ ||+.-.
T Consensus 10 ~~D~~~IfTkGGvVLWs--~~~~~~~~~~~IN~LIr~VlLEE-R~~-~---~~y~~d~ytlkW~l~NEl~LVFVvVYQ 80 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWC--FQGVSDSCTGPVNALIRSVLLQE-RGG-N---NSFTHEALTLKYKLDNQFELVFVVGFQ 80 (185)
T ss_dssp SCSEEEEEETTSBEEEE--EBTTTBSCCCHHHHHHHHTGGGC------------CCCCCEEEEEEETTTTEEEEEEES
T ss_pred ceeEEEEEeCCeEEEEe--ecCCcccccchHHHHHHHhhhcc-ccC-C---CceeEcCeEEEEEEeccCCEEEEEEEc
Confidence 88999999999999998 33211 00011222333322111 321 1 24567899999998876544 343444
Done!