BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031910
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 84/109 (77%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP PP ++F
Sbjct: 14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
SE+WHPN+ +G VCISILH PGDD GYE ERW PVHT ++ S+
Sbjct: 74 SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 122
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 84/109 (77%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F
Sbjct: 28 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+E+WHPNV +G VCISILH PG+D GYE ERW P+HT ++ S+
Sbjct: 88 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 136
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 18 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 77
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV + + S+
Sbjct: 78 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 126
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 20 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 79
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV + + S+
Sbjct: 80 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 128
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 17 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV + + S+
Sbjct: 77 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 125
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV + + S+
Sbjct: 74 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+MWHPN+Y G VCISILHPP DDP EL +ERW P ++ S+
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 126
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+MWHPN+Y G VCISILHPP DDP EL +ERW P ++ S+
Sbjct: 76 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 123
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 73/109 (66%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L K+ G AG E+N+F W I GPPDT Y G FNA + FP +YP+SPP + FT
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ HPN+YP+G+VCISILH PGDDPN YELA ERW+PV + + S+
Sbjct: 75 PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 123
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
NV W+ IIGP DT YE G F ++ F + YP PP V+F SEM+HPNVY +G++C+ I
Sbjct: 32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDI 91
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSL----------SPGVLNYAWFLMNAGYEYV 143
L RWTP + AS+ S+ SP + A + +YV
Sbjct: 92 LQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYV 138
Query: 144 N 144
Sbjct: 139 K 139
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E+N+ +W+ I GP T +E G F ++ F + YP PPTVRF S
Sbjct: 16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+M+HPNVY DG +C+ IL RW+P + +S+ S+
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQ 110
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G ++N+ W+ I GP DT ++GG F + F ++YP PPTVRF S
Sbjct: 16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
M+HPN+Y DG +C+ IL +W+P++ A++ S+
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+M+HPNVY DG +C+ IL RW+P + A++ S+
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 110
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 19 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+M+HPNVY DG +C+ IL RW+P + A++ S+
Sbjct: 78 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 113
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 30 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 89 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 124
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 77 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 112
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 14 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 73 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 108
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 32 DLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPN+ G +C+ IL ++W+P T + V S+S
Sbjct: 91 TKIYHPNINSQGAICLDIL-------------KDQWSPALTISKVLLSIS 127
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 12 DLGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+ ++HPN+ +G +C+ IL ++W+P T + V S+S
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSIS 107
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPP++ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 74 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 109
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 76 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 111
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
++ W V I G P T +EGG + M FP+ YP PP RFT ++HPNVYP G VC+SI
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 94 LH 95
L+
Sbjct: 103 LN 104
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 89 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 124
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 116
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 76 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 111
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 116
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 20 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 78
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 79 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 114
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 106
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 70 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 105
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWGPALTISKVLLSI 108
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + +++ W SI+GP D+ Y GG F + FP +YP PP + FT
Sbjct: 13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT 71
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G +C+ IL ++W+P T + V S+
Sbjct: 72 TKIYHPNINANGNICLDILK-------------DQWSPALTLSKVLLSI 107
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ L +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDALR-------------SQWSPALTISKVLLSI 108
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W + +GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G +C+ IL +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
++++HPN+ +G + + IL +W+P T + V S+
Sbjct: 77 TKIYHPNINSNGSIKLDILR-------------SQWSPALTVSKVLLSI 112
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G + + IL +W+P T + V S+
Sbjct: 73 TRIYHPNINSNGSISLDILRS-------------QWSPALTISKVLLSI 108
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G + + IL +W+P T + V S+
Sbjct: 74 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSI 109
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G + + IL +W+P T + V S+
Sbjct: 71 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSI 106
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HPN+ +G + + IL +W+P T + V S+
Sbjct: 89 TRIYHPNINSNGSIXLDILR-------------SQWSPALTISKVLLSI 124
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D N+F+W ++ GP DT+YE + + FP +YP PP V+FT+ WHPNV G +C
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 91 ISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+ IL E WT + ++ SL
Sbjct: 94 LDILK-------------ENWTASYDVRTILLSLQ 115
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G + + IL
Sbjct: 70 TRIYHPNINSNGSISLDILR 89
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGD 99
L D
Sbjct: 99 LEEDKD 104
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 94 LHPPGD 99
L D
Sbjct: 98 LEEDKD 103
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGD 99
L D
Sbjct: 99 LEEDKD 104
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 94 LHPPGD 99
L D
Sbjct: 102 LEEDKD 107
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 20 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+++HPNV G++C+ IL ++W+P +V S+
Sbjct: 79 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 114
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+++HPNV G++C+ IL ++W+P +V S+
Sbjct: 74 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 109
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 13 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+++HPNV G++C+ IL ++W+P +V S+
Sbjct: 72 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 107
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 17 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+++HPNV G++C+ IL ++W+P +V S+
Sbjct: 76 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 111
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 18 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+++HPNV G++C+ IL ++W+P +V S+
Sbjct: 77 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 112
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD-GK 88
+ +SN FEW I GP T YEGG F +T P++YP +PP ++F +++WHPN+ G
Sbjct: 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 89 VCISILH 95
+C+ +L
Sbjct: 107 ICLDVLK 113
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HP VYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 84 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 88 KVCISILH 95
+C+ IL
Sbjct: 143 AICLDILK 150
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
+ LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN
Sbjct: 27 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 85
Query: 83 VYP-DGKVCISILH 95
+ G +C+ IL
Sbjct: 86 ISSVTGAICLDILK 99
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 48 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106
Query: 88 KVCISILH 95
+C+ IL
Sbjct: 107 AICLDILK 114
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
+ LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN
Sbjct: 29 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 87
Query: 83 VYP-DGKVCISILH 95
+ G +C+ IL
Sbjct: 88 ISSVTGAICLDILK 101
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
+ LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN
Sbjct: 26 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84
Query: 83 VYP-DGKVCISILH 95
+ G +C+ IL
Sbjct: 85 ISSVTGAICLDILK 98
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++HP + +G + + IL +W+P T + V S+
Sbjct: 71 TRIYHPAINSNGSISLDILR-------------SQWSPALTISKVLLSI 106
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNV P G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N++EW +I+GPP ++YEGG F +TF +YP PP V F + ++H N+ G +C+ I
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSL 124
L + W+P T + V S+
Sbjct: 91 LK-------------DNWSPALTISKVLLSI 108
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
++ ++P SAG V + ++F W+ +I GP D+ Y+GG F + FP +YP P V F
Sbjct: 15 EIQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPN+ +G +C+ IL ++W+P T + V S+S
Sbjct: 74 TKVYHPNINKNGVICLDILK-------------DQWSPALTLSRVLLSIS 110
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D+ +P SAG + N++EW +I+GPP ++YEGG F +TF YP PP V F
Sbjct: 59 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFR 117
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
+ ++H N+ G +C+ IL + W+P T + V S+
Sbjct: 118 TRIYHCNINSQGVICLDILK-------------DNWSPALTISKVLLSI 153
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++C+ +L
Sbjct: 74 KIYHPNIDRLGRICLDVLK 92
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++C+ +L
Sbjct: 76 KIYHPNIDRLGRICLDVLK 94
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPGVLN 130
+ H NV G++C++IL P E WTPV H +VWR L V +
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCD 136
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPGV 128
+ H NV G++C++IL P E WTPV H +VWR L V
Sbjct: 90 NILHSNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPV 134
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPGVLN 130
+ H NV G++C++IL P E WTPV H +VWR L V +
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCD 136
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPN+ G++C+ IL ++W+P +V S+
Sbjct: 71 TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 107
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPN+ G++C+ IL ++W+P +V S+
Sbjct: 71 TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 107
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 32 ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW--HPNVYPDGKV 89
++++ +W V + G P TLYEG F + F YP P V FT E HP+VY +G +
Sbjct: 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 90 CISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
C+SIL TE W+P + SV S+
Sbjct: 110 CLSIL-------------TEDWSPALSVQSVCLSI 131
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 15 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPNV +G++C+ I +++E W P V +L+
Sbjct: 74 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALN 111
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 12 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
++++HPNV +G++C+ I +++E W P V +L+
Sbjct: 71 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALN 108
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 23 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 80 HPNVYPDGKVCISILHPPGD 99
HPNVYP G +C+SIL+ D
Sbjct: 83 HPNVYPSGTICLSILNEDQD 102
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 25 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 84
Query: 80 HPNVYPDGKVCISILHPPGD 99
HPNVYP G +C+SIL+ D
Sbjct: 85 HPNVYPSGTICLSILNEDQD 104
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 22 VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
+ F VDE+N+ W +I P + Y+ G F + FP YP PP + F ++++HP
Sbjct: 21 MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 79
Query: 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
N+ G+VC+ + ++ E W P V +SL
Sbjct: 80 NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSL 110
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 22 VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
+ F VDE+N+ W +I P + Y+ G F + FP YP PP + F ++++HP
Sbjct: 19 MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77
Query: 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
N+ G+VC+ + ++ E W P V +SL
Sbjct: 78 NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSL 108
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++ + +L
Sbjct: 74 KIYHPNIDRLGRISLDVLK 92
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D+ + + I+G +T YE G F + P+ YP PP +RF + ++HPN+ G++C
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 91 ISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+ +L P P G W P A+V S+
Sbjct: 89 LDVLKLP---PKGA------WRPSLNIATVLTSIQ 114
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 24 GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
G SA +V ++ W I GP T YEGG F + P +YP +PP ++F +++WHPN+
Sbjct: 64 GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 84 YPD-GKVCISIL 94
G +C+ IL
Sbjct: 123 SSQTGAICLDIL 134
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
HPN+ G +C+ IL W+PV T S SL
Sbjct: 77 HPNISSVTGAICLDILR-------------NAWSPVITLKSALISLQ 110
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 16 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75
Query: 80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
HPN+ G +C+ IL W+PV T S SL
Sbjct: 76 HPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQ 109
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 37 EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
++ V GP T YEGG + +T PD+YP + P++ F +++ HPNV G VC+ +++
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 96 PPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
+ WTP+++ +V+ P +L Y
Sbjct: 90 -------------QTWTPLYSLVNVFEVFLPQLLTY 112
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HP + G++ + +L
Sbjct: 74 KIYHPAIDRLGRISLDVLK 92
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +P DG +E ++ + V+I GP T Y GG F + ++P SPP F +
Sbjct: 25 LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 77 EMWHPNVYPDGKVCISIL 94
+++HPNV +G++C+++L
Sbjct: 84 KIFHPNVGANGEICVNVL 101
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH-----PNVYP 85
DE + V I GP DT Y G F + FP +YP SPP V + H PN+Y
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 86 DGKVCISILHPPGDDPNGYELATERWTPVHTA-ASVWRSLSPGVLNYAWFLMNAGYE 141
DGKVC+SIL+ P E+W P ++ V S+ +L + GYE
Sbjct: 165 DGKVCLSILNTWHGRPE------EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V SN+ W V +G +T+Y + + FPDNYP+ PP V F + H +VY +G
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 104 ICLSVL---GDDYN 114
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTAASV---WRSLSPGVLNY 131
G W P T V SL +LN+
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTAASV---WRSLSPGVLNY 131
G W P T V SL +LN+
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL +N G +A V E ++ EW V I G +++++G F + F Y +PP V+F
Sbjct: 34 DLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92
Query: 76 SEMWHPNVYPD-GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+ +HPNV P G+ CI L D+P E+W +T +S+ +L
Sbjct: 93 TIPFHPNVDPHTGQPCIDFL----DNP-------EKWNTNYTLSSILLALQ 132
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 37 EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
E+ V GP T YEGG + + PD YP P++ F ++++HPN+ G VC+ +++
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
Query: 96 PPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
+ WT ++ +++ S P +L Y
Sbjct: 112 -------------QTWTALYDLTNIFESFLPQLLAY 134
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
+ N+F+W +I G T+YE + + FP YP + PTV+F + +HPNV G +
Sbjct: 55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114
Query: 91 ISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
+ IL E+W+ ++ ++ S+
Sbjct: 115 LDILK-------------EKWSALYDVRTILLSIQ 136
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V +N+ W V +G +T+Y + + FPD+YP+ PP V F + H +VY +G
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 90 ICLSLL---GDDYN 100
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 78 MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132
+ V G+V + LH + W +T ++ SL +L+ A
Sbjct: 101 IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSA 144
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 78 MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132
+ V G+V + LH + W +T ++ SL +L+ A
Sbjct: 97 IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSA 140
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 30 VDESNVFEWSVSIIGPPDTLY--EGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87
VD ++ W + + P D++Y G + + F D+YP PPTVRF + ++ P V +G
Sbjct: 44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWR 122
+C +++ + WTP A+ V +
Sbjct: 104 GICDRMVN-------------DFWTPDQHASDVIK 125
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISI 93
V E+ V GP T YE G + + P +YP P++ F + + HPNV G VC+ +
Sbjct: 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDV 96
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
++ + WTP++ +++ P +L Y
Sbjct: 97 IN-------------QTWTPMYQLENIFDVFLPQLLRY 121
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G VC++IL
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR------ 93
Query: 102 NGYELATERWTPVHTAASVWRSLS 125
E W PV T S+ L
Sbjct: 94 -------EDWKPVLTINSIIYGLQ 110
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 33 SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN--VYPDGKVC 90
SN+ EW + GP T YEGG+++ + FP +P PP++ M PN + ++C
Sbjct: 41 SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLC 96
Query: 91 ISI--LHP 96
+SI HP
Sbjct: 97 LSITDFHP 104
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
I+ P + Y G N + F + YP+ PP V +++HPN+ G VC++IL
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR------ 122
Query: 102 NGYELATERWTPVHTAASVWRSL 124
E W+P S+ L
Sbjct: 123 -------EDWSPALDLQSIITGL 138
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G V ++IL
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR------ 113
Query: 102 NGYELATERWTPVHTAASVWRSLS 125
E W PV T S+ L
Sbjct: 114 -------EDWKPVLTINSIIYGLQ 130
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 23 DGFSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80
+ S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++
Sbjct: 25 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84
Query: 81 PNVYPDGKVCISILHPPGDDPNGYELAT 108
P V P + H D Y + T
Sbjct: 85 PCVNPTTGEVQTDFHTLRDWKRAYTMET 112
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 23 DGFSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80
+ S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++
Sbjct: 24 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 83
Query: 81 PNVYPDGKVCISILHPPGDDPNGYELAT 108
P V P + H D Y + T
Sbjct: 84 PCVNPTTGEVQTDFHTLRDWKRAYTMET 111
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 59 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 49 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 29 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 39 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 28 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 34 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 GLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
GL D+ + + W+ I+GPP T+YE ++ + YP +PP VRF +++
Sbjct: 31 GLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 60 TFPDNYPVSPPTVRFTSEMWHPN-VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAA 118
+F DN+P PP VR S + V G +C+ +L G W+ ++
Sbjct: 75 SFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQG------------WSSAYSIE 122
Query: 119 SVWRSLSPGVLN 130
SV +S ++
Sbjct: 123 SVIMQISATLVK 134
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 86 DGKVCISILHPPGDDPNGYELATERWTPVHT 116
D S+++ PG++P GY L+ E W V T
Sbjct: 176 DSDRIASLINSPGNNPTGYSLSDEEWDEVIT 206
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 100 DPNGYELATERWTPVHTAASVWR 122
+ NGY++ TE+ TPV A S+ R
Sbjct: 119 NSNGYKIVTEKSTPVRAAESIRR 141
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSLSPG 127
+ P G+ P+ +++ T RWTP +AA V + +PG
Sbjct: 157 MTPQGNKPSCHDVITNRWTP--SAADVAANRTPG 188
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 38 WSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPP 70
W PP+TLY GGF + DN S P
Sbjct: 131 WGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRP 163
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYE 141
+ P G+ P+ +++ T RW P A+ R+ GV+ ++N G E
Sbjct: 215 MTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITN---IVNGGLE 259
>pdb|1QHK|A Chain A, N-Terminal Domain Of Saccharomyces Cerevisiae Rnase Hi
Reveals A Fold With A Resemblance To The N-Terminal
Domain Of Ribosomal Protein L9
Length = 47
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 18 CKNPVDGFSAGLVDESNVFEWSVSIIG 44
CKN VDG+ + + N +E + S +G
Sbjct: 21 CKNQVDGYGGAIYKKFNSYEQAKSFLG 47
>pdb|3VK7|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK7|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK8|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
pdb|3VK8|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
Length = 295
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
>pdb|3A45|A Chain A, Crystal Structure Of Mvnei1_2
pdb|3A45|B Chain B, Crystal Structure Of Mvnei1_2
pdb|3A46|A Chain A, Crystal Structure Of Mvnei1/thf Complex
pdb|3A46|B Chain B, Crystal Structure Of Mvnei1/thf Complex
Length = 289
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
>pdb|3A42|A Chain A, Crystal Structure Of Mvnei1
Length = 295
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDN 64
+ D +++F+ + +G P Y GGFF I T N
Sbjct: 334 IRDRADIFKQEAAQVGLPXLPYRGGFFITIPTDSAN 369
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 94 LHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYE 141
+ P G+ P+ +++ T RWTP + R GV+ ++N G E
Sbjct: 158 MTPQGNKPSCHDVITNRWTPSAADKAANRVPGFGVITN---IINGGLE 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,454,564
Number of Sequences: 62578
Number of extensions: 245311
Number of successful extensions: 513
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 144
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)