Query 031910
Match_columns 150
No_of_seqs 136 out of 1171
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 7.2E-45 1.6E-49 265.4 13.6 122 1-135 1-122 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 7.9E-44 1.7E-48 255.4 11.2 116 6-135 2-117 (148)
3 KOG0425 Ubiquitin-protein liga 100.0 4.3E-42 9.4E-47 247.2 13.9 136 1-136 1-136 (171)
4 KOG0419 Ubiquitin-protein liga 100.0 1.8E-42 3.9E-47 242.8 10.9 122 2-137 1-122 (152)
5 KOG0426 Ubiquitin-protein liga 100.0 1.5E-40 3.2E-45 233.5 12.0 132 1-133 1-132 (165)
6 PTZ00390 ubiquitin-conjugating 100.0 8.5E-40 1.8E-44 240.1 14.9 116 6-135 3-118 (152)
7 PLN00172 ubiquitin conjugating 100.0 1.9E-39 4.2E-44 237.1 14.6 116 6-135 2-117 (147)
8 KOG0418 Ubiquitin-protein liga 100.0 2.4E-36 5.2E-41 223.3 10.9 120 1-136 1-124 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3E-36 6.5E-41 218.1 11.2 112 9-132 1-112 (140)
10 KOG0424 Ubiquitin-protein liga 100.0 1.4E-35 3E-40 210.9 11.9 124 2-136 1-128 (158)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 6.6E-35 1.4E-39 211.4 13.9 113 8-133 2-114 (141)
12 KOG0421 Ubiquitin-protein liga 100.0 1E-35 2.2E-40 211.7 8.9 128 3-144 27-156 (175)
13 smart00212 UBCc Ubiquitin-conj 100.0 2.3E-33 5E-38 204.2 13.8 117 8-136 1-117 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 2.9E-33 6.4E-38 198.0 10.6 116 6-134 3-118 (153)
15 KOG0894 Ubiquitin-protein liga 100.0 2.1E-32 4.6E-37 206.2 12.9 125 1-138 1-125 (244)
16 KOG0427 Ubiquitin conjugating 100.0 6.3E-32 1.4E-36 189.7 12.5 112 4-130 14-126 (161)
17 KOG0420 Ubiquitin-protein liga 100.0 5.8E-29 1.2E-33 181.8 9.0 114 3-132 26-142 (184)
18 KOG0416 Ubiquitin-protein liga 99.9 1.3E-27 2.8E-32 174.5 7.7 109 5-130 3-112 (189)
19 KOG0423 Ubiquitin-protein liga 99.9 5.2E-28 1.1E-32 177.1 4.9 115 6-134 11-125 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 4.5E-24 9.7E-29 164.1 10.1 114 3-130 9-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.9 6E-23 1.3E-27 182.4 8.9 133 8-147 854-988 (1101)
22 KOG0895 Ubiquitin-conjugating 99.8 1.1E-18 2.4E-23 155.5 12.3 137 5-148 282-422 (1101)
23 KOG0429 Ubiquitin-conjugating 99.5 8.8E-14 1.9E-18 105.9 10.3 112 9-135 23-138 (258)
24 KOG0896 Ubiquitin-conjugating 99.4 2.5E-13 5.5E-18 96.1 6.9 120 1-131 1-124 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 1.3E-09 2.8E-14 75.3 3.1 64 55-130 13-77 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.5E-07 3.2E-12 67.6 5.8 67 51-130 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.5 5E-07 1.1E-11 64.0 6.5 84 36-133 29-120 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.3 3.2E-07 6.9E-12 66.0 1.3 82 6-94 25-117 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00011 2.3E-09 60.0 9.2 80 43-136 56-143 (365)
30 KOG3357 Uncharacterized conser 97.8 1.9E-05 4.1E-10 56.2 3.2 82 6-94 28-120 (167)
31 PF14462 Prok-E2_E: Prokaryoti 97.5 0.0019 4.1E-08 45.8 9.5 103 23-129 12-120 (122)
32 PF05773 RWD: RWD domain; Int 96.6 0.0084 1.8E-07 40.7 6.3 69 8-78 4-74 (113)
33 smart00591 RWD domain in RING 96.2 0.081 1.8E-06 35.4 8.9 41 37-77 24-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.6 0.018 4E-07 42.7 4.1 62 57-130 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 89.8 0.24 5.3E-06 40.1 2.3 93 7-136 101-194 (291)
36 KOG0309 Conserved WD40 repeat- 78.8 12 0.00026 34.5 7.8 70 6-77 421-491 (1081)
37 KOG4018 Uncharacterized conser 75.7 13 0.00028 28.9 6.3 65 8-75 5-71 (215)
38 PF06113 BRE: Brain and reprod 72.6 12 0.00025 31.1 5.7 67 35-126 53-122 (333)
39 PF14460 Prok-E2_D: Prokaryoti 70.2 5.7 0.00012 29.6 3.2 20 76-95 90-112 (175)
40 smart00340 HALZ homeobox assoc 65.8 6.1 0.00013 22.7 2.0 15 6-20 20-34 (44)
41 PF14455 Metal_CEHH: Predicted 56.6 54 0.0012 24.3 6.1 111 9-127 9-171 (177)
42 TIGR03737 PRTRC_B PRTRC system 51.8 8.1 0.00018 30.3 1.2 18 77-94 132-152 (228)
43 PRK11700 hypothetical protein; 51.5 1.1E+02 0.0023 23.4 9.8 93 3-95 49-175 (187)
44 cd00421 intradiol_dioxygenase 50.2 27 0.00059 25.1 3.8 26 51-76 64-90 (146)
45 cd03457 intradiol_dioxygenase_ 46.3 32 0.0007 26.0 3.8 26 51-76 85-110 (188)
46 PF06113 BRE: Brain and reprod 41.9 34 0.00074 28.4 3.5 24 53-76 306-329 (333)
47 KOG4445 Uncharacterized conser 40.8 34 0.00074 28.2 3.2 25 53-77 45-69 (368)
48 cd03459 3,4-PCD Protocatechuat 39.6 49 0.0011 24.3 3.7 25 52-76 72-101 (158)
49 KOG3285 Spindle assembly check 36.5 69 0.0015 24.4 4.1 42 6-48 120-161 (203)
50 PF09606 Med15: ARC105 or Med1 33.4 14 0.0003 34.1 0.0 24 54-77 715-738 (799)
51 PF00845 Gemini_BL1: Geminivir 33.2 1.1E+02 0.0024 24.5 4.9 47 34-80 101-155 (276)
52 PF03366 YEATS: YEATS family; 32.2 1.5E+02 0.0032 19.4 4.9 42 36-79 2-43 (84)
53 cd05845 Ig2_L1-CAM_like Second 31.7 1.5E+02 0.0032 19.8 4.8 26 50-77 16-41 (95)
54 PF13950 Epimerase_Csub: UDP-g 29.6 38 0.00081 20.8 1.5 20 109-128 36-55 (62)
55 KOG0177 20S proteasome, regula 29.4 28 0.00062 26.6 1.1 30 86-128 135-164 (200)
56 PF12065 DUF3545: Protein of u 29.3 38 0.00082 20.9 1.4 11 7-17 36-46 (59)
57 PF04881 Adeno_GP19K: Adenovir 27.7 60 0.0013 23.3 2.4 30 32-61 44-74 (139)
58 TIGR02423 protocat_alph protoc 27.5 94 0.002 23.6 3.6 25 52-76 96-125 (193)
59 cd03463 3,4-PCD_alpha Protocat 26.0 1.1E+02 0.0023 23.1 3.7 25 52-76 92-121 (185)
60 PF00779 BTK: BTK motif; Inte 24.3 24 0.00052 18.9 -0.1 17 78-94 2-19 (32)
61 COG0544 Tig FKBP-type peptidyl 24.0 2E+02 0.0044 24.7 5.4 14 54-67 210-223 (441)
62 KOG0700 Protein phosphatase 2C 20.9 2.3E+02 0.005 24.1 5.0 73 9-89 249-332 (390)
63 COG1343 CRISPR-associated prot 20.8 2.7E+02 0.0058 18.5 4.5 45 2-48 39-83 (89)
64 PF14135 DUF4302: Domain of un 20.7 1.7E+02 0.0036 22.7 3.9 15 5-19 9-23 (235)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-45 Score=265.44 Aligned_cols=122 Identities=47% Similarity=0.864 Sum_probs=116.3
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcc
Q 031910 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (150)
|++..|.+||++|+++|++++++++++.+.+++|+++|+++|.||++||||||.|++.|.||++||++||+|+|.+++||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 77777999999999999999999999999866699999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcccc
Q 031910 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFL 135 (150)
Q Consensus 81 pnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~ 135 (150)
|||+.+|+||+++|+ ++|+|+++|++||++|+++|.+|++-.
T Consensus 81 PNV~~~G~vCLdIL~-------------~~WsP~~~l~sILlsl~slL~~PN~~~ 122 (153)
T COG5078 81 PNVDPSGNVCLDILK-------------DRWSPVYTLETILLSLQSLLLSPNPDS 122 (153)
T ss_pred CCcCCCCCChhHHHh-------------CCCCccccHHHHHHHHHHHHcCCCCCC
Confidence 999999999999997 999999999999999999999876544
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-44 Score=255.42 Aligned_cols=116 Identities=39% Similarity=0.791 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 85 (150)
+.+||.||+++|++++++||++.+. ++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 3569999999999999999999975 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFL 135 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~ 135 (150)
.|+||++||+ +.|+|+++|++||++|+++|.+|+|..
T Consensus 81 ~G~IclDILk-------------~~WsPAl~i~~VllsI~sLL~~Pnpdd 117 (148)
T KOG0417|consen 81 NGRICLDILK-------------DQWSPALTISKVLLSICSLLSDPNPDD 117 (148)
T ss_pred cccchHHhhh-------------ccCChhhHHHHHHHHHHHHhcCCCCCc
Confidence 9999999997 889999999999999999999976543
No 3
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=247.21 Aligned_cols=136 Identities=65% Similarity=1.144 Sum_probs=131.2
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcc
Q 031910 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (150)
|+++++..-|+++|++|++++..|+++..+|++|+++|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.+++||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 78888999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccC
Q 031910 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 81 pnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~ 136 (150)
|||+++|++|++||++++.++.+|+...+.|+|..|+++|+++|.++|.+|+-...
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SP 136 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESP 136 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988765544
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-42 Score=242.84 Aligned_cols=122 Identities=40% Similarity=0.744 Sum_probs=116.3
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCccc
Q 031910 2 AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81 (150)
Q Consensus 2 as~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 81 (150)
|+.+|.+||++|+++++++++.|++..|. ++|+++|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 35789999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccCc
Q 031910 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMN 137 (150)
Q Consensus 82 nv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~~ 137 (150)
||+.+|.+|+++|. ..|+|+|++.+||.+||++|.+|.|-...
T Consensus 80 Nvya~G~iClDiLq-------------NrWsp~Ydva~ILtsiQslL~dPn~~sPa 122 (152)
T KOG0419|consen 80 NVYADGSICLDILQ-------------NRWSPTYDVASILTSIQSLLNDPNPNSPA 122 (152)
T ss_pred CcCCCCcchHHHHh-------------cCCCCchhHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999999997 89999999999999999999988875443
No 5
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=233.46 Aligned_cols=132 Identities=51% Similarity=0.940 Sum_probs=127.5
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcc
Q 031910 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (150)
|+ ..|.|||++||++|..++++||.+.|.++||+++|.|.|.||++|+|+||.|..++.||.|||..||+++|...+||
T Consensus 1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 44 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcc
Q 031910 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (150)
Q Consensus 81 pnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~ 133 (150)
|||+.+|+||++||+.++.++..|+...+.|+|..+++.||+++.++|..|+-
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPND 132 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999987653
No 6
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.5e-40 Score=240.12 Aligned_cols=116 Identities=28% Similarity=0.589 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 85 (150)
+.+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 6799999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFL 135 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~ 135 (150)
+|.||+++|. ++|+|++||++||++|+++|.+|++-.
T Consensus 82 ~G~iCl~iL~-------------~~W~p~~ti~~iL~~i~~ll~~P~~~~ 118 (152)
T PTZ00390 82 LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPEPDD 118 (152)
T ss_pred CCeEECccCc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCC
Confidence 9999999996 899999999999999999999876654
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-39 Score=237.08 Aligned_cols=116 Identities=40% Similarity=0.764 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 85 (150)
|.+||+||+++|++++++++++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 3589999999999999999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFL 135 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~ 135 (150)
+|.||+++|. ++|+|+++|++||++|+++|.+|++-.
T Consensus 81 ~G~iCl~il~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~ 117 (147)
T PLN00172 81 NGSICLDILR-------------DQWSPALTVSKVLLSISSLLTDPNPDD 117 (147)
T ss_pred CCEEEcccCc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCC
Confidence 9999999996 899999999999999999999887654
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=223.31 Aligned_cols=120 Identities=33% Similarity=0.614 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc
Q 031910 1 MAKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
|+ + +.+||++|.+++.+++ ..||.++.. ++|+.+....|.||+|||||||.|.++|++|++|||+||+|+|.|+
T Consensus 1 m~-~-~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MS-N-AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Cc-c-HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 55 3 8999999999999988 689999998 7899999999999999999999999999999999999999999999
Q ss_pred CcccccCC-CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccC
Q 031910 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 78 i~Hpnv~~-~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~ 136 (150)
||||||.+ .|.||+++|+ +.|++++||+++|++||++|.+++|...
T Consensus 78 IwHPnVSs~tGaICLDilk-------------d~Wa~slTlrtvLislQalL~~pEp~dP 124 (200)
T KOG0418|consen 78 IWHPNVSSQTGAICLDILK-------------DQWAASLTLRTVLISLQALLCAPEPKDP 124 (200)
T ss_pred eecCCCCcccccchhhhhh-------------cccchhhhHHHHHHHHHHHHcCCCCCCh
Confidence 99999986 9999999997 9999999999999999999999988653
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3e-36 Score=218.11 Aligned_cols=112 Identities=44% Similarity=0.867 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCCCCc
Q 031910 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGK 88 (150)
Q Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 88 (150)
||++|+++|+++++.|+.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999984459999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCc
Q 031910 89 VCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132 (150)
Q Consensus 89 iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~ 132 (150)
||+++|. .+.|+|+++|.+||.+|+++|.+++
T Consensus 81 icl~~l~------------~~~W~p~~~i~~il~~i~~ll~~p~ 112 (140)
T PF00179_consen 81 ICLDILN------------PESWSPSYTIESILLSIQSLLSEPN 112 (140)
T ss_dssp BGHGGGT------------TTTC-TTSHHHHHHHHHHHHHHSTC
T ss_pred chhhhhh------------cccCCcccccccHHHHHHHHHhCCC
Confidence 9999997 3569999999999999999998763
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=210.86 Aligned_cols=124 Identities=32% Similarity=0.584 Sum_probs=113.6
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc
Q 031910 2 AKSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 2 as~~a~~RL~kEl~~l~~~~~~~i~~~~~~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
+|..+..||++|-+.|.++.+-|+.+.|..+ .|++.|.|.|.|++||+||||.|.+.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 3467899999999999999999999998743 479999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccC
Q 031910 78 MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 78 i~Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~ 136 (150)
+|||||+..|.|||+||.. ..+|+|+.||.+||.+||.+|.+|++-..
T Consensus 81 l~HPNVypsgtVcLsiL~e-----------~~~W~paitikqiL~gIqdLL~~Pn~~~p 128 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNE-----------EKDWRPAITIKQILLGIQDLLDTPNITSP 128 (158)
T ss_pred CcCCCcCCCCcEehhhhcc-----------ccCCCchhhHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999972 24599999999999999999988876543
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.6e-35 Score=211.38 Aligned_cols=113 Identities=48% Similarity=0.834 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCCCC
Q 031910 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (150)
Q Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 87 (150)
+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999986 77999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCcc
Q 031910 88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (150)
Q Consensus 88 ~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~ 133 (150)
.||+++|. .++|+|+++|.+||.+|+++|.++++
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~ 114 (141)
T cd00195 81 KICLSILK------------THGWSPAYTLRTVLLSLQSLLNEPNP 114 (141)
T ss_pred CCchhhcC------------CCCcCCcCcHHHHHHHHHHHHhCCCC
Confidence 99999997 23599999999999999999997766
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=211.70 Aligned_cols=128 Identities=32% Similarity=0.558 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccc
Q 031910 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (150)
Q Consensus 3 s~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 82 (150)
.+...|||++||..|+....+||++.|. ++|++.|..+|.||++|+|+|..|++.+.||.+||++||.|+|.|+.||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPN 105 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPN 105 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCC
Confidence 3567899999999999999999999996 889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccc--cCchhhhhhc
Q 031910 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWF--LMNAGYEYVN 144 (150)
Q Consensus 83 v~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~--~~~~~~~~~~ 144 (150)
|+..|.||++||+ +.|+..|++++||++||++|-.|+.- +|..+.|-|+
T Consensus 106 VD~~GnIcLDILk-------------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~ 156 (175)
T KOG0421|consen 106 VDLSGNICLDILK-------------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS 156 (175)
T ss_pred ccccccchHHHHH-------------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc
Confidence 9999999999997 99999999999999999999776432 4555555554
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.3e-33 Score=204.17 Aligned_cols=117 Identities=41% Similarity=0.773 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCCCC
Q 031910 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (150)
Q Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 87 (150)
+||++|++++++++++|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 59999999999999999999887445999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccC
Q 031910 88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 88 ~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~ 136 (150)
.||+++|. .++|+|++++.+||.+|+++|.++++...
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~ 117 (145)
T smart00212 81 EICLDILK------------QEKWSPATTLETVLLSIQSLLSEPNPDSP 117 (145)
T ss_pred CEehhhcC------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCc
Confidence 99999995 27899999999999999999988766543
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-33 Score=198.03 Aligned_cols=116 Identities=34% Similarity=0.632 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 85 (150)
|.+||+|||.+|+++....+.-...+++|++.|.+.|. |++-||..|.|+++|.||.+|||+||+|.|.|++|||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 78999999999999998877766667899999999999 99999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWF 134 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~ 134 (150)
.|.+|+.+++ .++|.|+.++.+||+++.+++-+|+|=
T Consensus 82 ~gqvClPiis------------~EnWkP~T~teqVlqaLi~liN~P~pe 118 (153)
T KOG0422|consen 82 KGQVCLPIIS------------AENWKPATRTEQVLQALIALINDPEPE 118 (153)
T ss_pred CCceeeeeee------------cccccCcccHHHHHHHHHHHhcCCCcc
Confidence 9999999998 699999999999999999999988764
No 15
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=206.22 Aligned_cols=125 Identities=27% Similarity=0.533 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcc
Q 031910 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (150)
||+.+|.|||+|||+.|++++.++|.+.|. ++||.+||.+|.||++|||+||.||.++.||++||++||.|++.|+-
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN-- 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN-- 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--
Confidence 899999999999999999999999999996 99999999999999999999999999999999999999999999952
Q ss_pred cccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccCch
Q 031910 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNA 138 (150)
Q Consensus 81 pnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~~~ 138 (150)
..+-.+-++||++.+ .|.+.|+|.+++++||.+|.++|.+..|=+-++
T Consensus 78 GRFktntRLCLSiSD----------fHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD----------FHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred CceecCceEEEeccc----------cCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 223346689999997 457999999999999999999999988866544
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.3e-32 Score=189.67 Aligned_cols=112 Identities=31% Similarity=0.682 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccC-cccc
Q 031910 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN 82 (150)
Q Consensus 4 ~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 82 (150)
..|.+||+||+.+|+.+++.|+.... .+|+..|.+-+.|.+||.|+|.+|.++++||+.||++.|.|.|..++ .||+
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH 91 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH 91 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence 56899999999999999999999874 58999999999999999999999999999999999999999999985 7999
Q ss_pred cCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031910 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN 130 (150)
Q Consensus 83 v~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~ 130 (150)
|+.||.||+++|. +.|+|++++.+|+++|.++|..
T Consensus 92 iYSNGHICL~iL~-------------d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 92 IYSNGHICLDILY-------------DSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred eecCCeEEEEeec-------------ccCCcchhhHHHHHHHHHHHcc
Confidence 9999999999997 9999999999999999999976
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-29 Score=181.80 Aligned_cols=114 Identities=33% Similarity=0.588 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCcc--eEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCc
Q 031910 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79 (150)
Q Consensus 3 s~~a~~RL~kEl~~l~~~~~~~i~~~~~~-~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 79 (150)
.|.|..||++|+.++ +.+++++....+ .++.. ++.++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++|
T Consensus 26 ~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 26 VSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred ccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 356778888888877 455555533322 33333 5999998 99999999999999999999999999999999999
Q ss_pred ccccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCc
Q 031910 80 HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132 (150)
Q Consensus 80 Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~ 132 (150)
||||+.+|.|||+||+ ++|+|+.+|.+|+.+++.+|.++.
T Consensus 103 HPNId~~GnVCLnILR-------------edW~P~lnL~sIi~GL~~LF~epn 142 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYGLQFLFLEPN 142 (184)
T ss_pred cCCcCCcchHHHHHHH-------------hcCccccchHHHHHHHHHHhccCC
Confidence 9999999999999998 899999999999999999998865
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-27 Score=174.46 Aligned_cols=109 Identities=25% Similarity=0.683 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccC
Q 031910 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY 84 (150)
Q Consensus 5 ~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 84 (150)
...|||..|+.+|.... ..+..+ ++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||+
T Consensus 3 ~~~rRid~Dv~KL~~s~---yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID 78 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSD---YEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID 78 (189)
T ss_pred CcccchhhHHHHHHhcC---CeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence 46799999999997554 557776 78899999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031910 85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN 130 (150)
Q Consensus 85 ~-~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~ 130 (150)
. .|.|||+++. ..|+|.|++-.|+..+.-.|+.
T Consensus 79 e~SGsVCLDViN-------------QtWSp~yDL~NIfetfLPQLL~ 112 (189)
T KOG0416|consen 79 EASGSVCLDVIN-------------QTWSPLYDLVNIFETFLPQLLR 112 (189)
T ss_pred hccCccHHHHHh-------------hhhhHHHHHHHHHHHHhHHHhc
Confidence 8 9999999997 8999999999999998777766
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-28 Score=177.09 Aligned_cols=115 Identities=27% Similarity=0.509 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 85 (150)
.++.|.||++.+..+++.||.|.+. +.|+....+.|.||.||||++|.|++.+.+..|||++||+-.|+|+||||||-.
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 6788999999999999999999875 889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWF 134 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~ 134 (150)
+|.||.+.|+ ..|+|++.|+.||+.|.++|..|.|-
T Consensus 90 NGEICVNtLK-------------kDW~p~LGirHvLltikCLLI~PnPE 125 (223)
T KOG0423|consen 90 NGEICVNTLK-------------KDWNPSLGIRHVLLTIKCLLIEPNPE 125 (223)
T ss_pred Cceehhhhhh-------------cccCcccchhhHhhhhheeeecCChH
Confidence 9999999997 99999999999999999999887763
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.5e-24 Score=164.10 Aligned_cols=114 Identities=31% Similarity=0.598 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccc
Q 031910 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (150)
Q Consensus 3 s~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 82 (150)
.+++.|||+||.++++ ++...+.+.+. ++|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+-.+|+- ..
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GR 84 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GR 84 (314)
T ss_pred cCHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cc
Confidence 3679999999999997 88888888898 99999999999999999999999999999999999999999999952 22
Q ss_pred cCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031910 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN 130 (150)
Q Consensus 83 v~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~ 130 (150)
+.-+-+||++|.. .|.+.|.|+++|++-|+.|..+|-+
T Consensus 85 FE~nkKiCLSISg----------yHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 85 FEVNKKICLSISG----------YHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeeCceEEEEecC----------CCccccCcchhHHHHHHHHHccccC
Confidence 3346689999985 4569999999999999999999843
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6e-23 Score=182.38 Aligned_cols=133 Identities=32% Similarity=0.470 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc--CcccccCC
Q 031910 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE--MWHPNVYP 85 (150)
Q Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~ 85 (150)
+..+.|++-|..+.+.+|.|... ++.+.-..+.|.|+.+|||..|.|.|.|.||++||..||.|...+. .++||+|.
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 44555666777788999999886 8888888999999999999999999999999999999999999987 58999999
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCCccccCchhhhhhccCC
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYVNLGG 147 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~~~~~~~~~~~~~~~~~ 147 (150)
+|+||+++|.++.+-+. +-|+|+-++.+||.+||+++++.+||+|++|||.+...+
T Consensus 933 ~g~vc~s~l~tw~g~~~------e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~ 988 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGN------EVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTA 988 (1101)
T ss_pred ccceehhhhccccCCCc------cccCcchhHHHHHHHhhhhhcccccccCccccccccccc
Confidence 99999999987665553 899999999999999999999999999999999987654
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-18 Score=155.52 Aligned_cols=137 Identities=32% Similarity=0.487 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc---Cccc
Q 031910 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE---MWHP 81 (150)
Q Consensus 5 ~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hp 81 (150)
...+|+++|++-+.++.+.++.+.+. +..+...++.|.||.++||++|.|.|+|.||..||..||.|.+++. .+.|
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 46789999999999999999999886 8999999999999999999999999999999999999999999998 5789
Q ss_pred ccCCCCcEEeccCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcCCccccCchhhhhhccCCC
Q 031910 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPV-HTAASVWRSLSPGVLNYAWFLMNAGYEYVNLGGD 148 (150)
Q Consensus 82 nv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~-~~l~~il~~I~~~l~~~~~~~~~~~~~~~~~~~~ 148 (150)
|.|.+|+||+++|..+.+..+ +.|+|. .+|.++|.+||.++.+..||+++.+|+....+.+
T Consensus 361 NlYn~GKVcLslLgTwtg~~~------e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~ga~~~~~~a~ 422 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRR------EKWTPNGSSLLQVLESIQGLILNEEPYFNEPGALQKRTSAD 422 (1101)
T ss_pred CcccCceEEeeeeeecccccc------cCCCccccchhhhhhhhhhhhcccCcccccccccccccCCC
Confidence 999999999999975544333 899998 8999999999999999999999999998776543
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.8e-14 Score=105.93 Aligned_cols=112 Identities=22% Similarity=0.386 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCC--CCCeEEEeccCcccccCC-
Q 031910 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV--SPPTVRFTSEMWHPNVYP- 85 (150)
Q Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~- 85 (150)
-|..|+..+++.+.+||.+.|. -.|-+.|..+|++ ..+.|+||+|+|+|.+|++||. .-|+|.|.+.++||+|.+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHhccCCceEEccc-ccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 5777888889999999999997 7889999999995 5569999999999999999994 789999999999999987
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcCCcccc
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPV-HTAASVWRSLSPGVLNYAWFL 135 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~-~~l~~il~~I~~~l~~~~~~~ 135 (150)
++.+|++--- ..|.-. ..|..||..||..+.+++--.
T Consensus 101 skeLdl~raf-------------~eWRk~ehhiwqvL~ylqriF~dpd~si 138 (258)
T KOG0429|consen 101 SKELDLNRAF-------------PEWRKEEHHIWQVLVYLQRIFYDPDVSI 138 (258)
T ss_pred ccceeHhhhh-------------hhhhccccHHHHHHHHHHHHhcCcccch
Confidence 9999997654 459774 599999999999999877543
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-13 Score=96.11 Aligned_cols=120 Identities=29% Similarity=0.474 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCC-eEEEecCCCCcc--eEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc
Q 031910 1 MAKSQASLLLQKQLKDLCKNPVDG-FSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 1 Mas~~a~~RL~kEl~~l~~~~~~~-i~~~~~~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
|+..++.-||.+|+.+=++-..++ ++....|.+|+. .|..+|.||+.|+||+..|.++|...++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 455667789999998877655444 666666555644 89999999999999999999999999999999999999999
Q ss_pred CcccccCC-CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCC
Q 031910 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131 (150)
Q Consensus 78 i~Hpnv~~-~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~~ 131 (150)
+--..|+. +|.+--..++ .-.+|+-.|+++.||..++..+...
T Consensus 81 inm~gvn~~~g~Vd~~~i~-----------~L~~W~~~y~~~~vl~~lr~~m~~~ 124 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDIT-----------VLARWQRSYSIKMVLGQLRKEMMSK 124 (138)
T ss_pred eeecccccCCCccCccccc-----------hhhcccccchhhHHHHhhhHHHHHH
Confidence 86666665 6665432221 0289999999999999998766543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.3e-09 Score=75.31 Aligned_cols=64 Identities=20% Similarity=0.464 Sum_probs=54.8
Q ss_pred EEEEEecCCCCCCCCCeEEEeccCc-ccccCCCCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 031910 55 FNAIMTFPDNYPVSPPTVRFTSEMW-HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN 130 (150)
Q Consensus 55 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l~~ 130 (150)
..+.+.|+++||+.||.++.+.+.- -.-|-.+|.||+.+|. +++|+.+|+++.++++|.+.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt------------~qgwssay~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT------------KQGWSSAYEVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc------------cccccchhhHHHHHHHHHHHhhc
Confidence 4567789999999999999998743 3445679999999998 59999999999999999998865
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.57 E-value=1.5e-07 Score=67.62 Aligned_cols=67 Identities=28% Similarity=0.583 Sum_probs=59.3
Q ss_pred CCCeEEEEEecCCCCCCCCCeEEEeccC---cccccCCCCcEEe---ccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH
Q 031910 51 EGGFFNAIMTFPDNYPVSPPTVRFTSEM---WHPNVYPDGKVCI---SILHPPGDDPNGYELATERWTPVHTAASVWRSL 124 (150)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~iCl---~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I 124 (150)
.|+.+.++|.||++||..||.|....+. +=|||+.+|.+|+ +..- +.|.|.-++.++|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------------D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------------DPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------------CccCHHHHHHHHHHHH
Confidence 6899999999999999999999998654 5799999999999 4443 9999999999999999
Q ss_pred HHhhcC
Q 031910 125 SPGVLN 130 (150)
Q Consensus 125 ~~~l~~ 130 (150)
+.+|.+
T Consensus 101 ~~lL~~ 106 (133)
T PF14461_consen 101 IRLLED 106 (133)
T ss_pred HHHHHH
Confidence 988864
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.47 E-value=5e-07 Score=63.97 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=57.0
Q ss_pred ceEEEEEeCCCCCCCCCCeEE--EEEecCCCCCCCCCeEEEeccC-----cccccCCCCcEEeccCCCCCCCCCCCCCCC
Q 031910 36 FEWSVSIIGPPDTLYEGGFFN--AIMTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISILHPPGDDPNGYELAT 108 (150)
Q Consensus 36 ~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~ 108 (150)
.+--+.+.|----.|+|..|. +.|-+|.+||.+||.|.+.... -+.+|+.+|+|.+..|
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-------------- 94 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-------------- 94 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH--------------
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh--------------
Confidence 333344444333358888886 5566899999999999876542 2449999999999999
Q ss_pred CCCCc-cCcHHHHHHHHHHhhcCCcc
Q 031910 109 ERWTP-VHTAASVWRSLSPGVLNYAW 133 (150)
Q Consensus 109 ~~W~P-~~~l~~il~~I~~~l~~~~~ 133 (150)
++|++ ..+|.+++..++..|....|
T Consensus 95 ~~W~~~~s~L~~lv~~l~~~F~~~pP 120 (121)
T PF05743_consen 95 QNWNPPSSNLVDLVQELQAVFSEEPP 120 (121)
T ss_dssp HT--TTTS-HHHHHHHHHHCCCHS-S
T ss_pred ccCCCCCCCHHHHHHHHHHHHhHcCC
Confidence 78998 78999999999988876655
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.26 E-value=3.2e-07 Score=65.97 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCC----------eEEEEEecCCCCCCCCCeEEEe
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRFT 75 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~ 75 (150)
-.+||++||+.|-+ +...+..+-..|.-.-..++||-|.|. .|.+++++|..||..||.|...
T Consensus 25 W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 25 WVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 46899999998732 111112222344333344566655553 3567777899999999999876
Q ss_pred ccC-cccccCCCCcEEeccC
Q 031910 76 SEM-WHPNVYPDGKVCISIL 94 (150)
Q Consensus 76 t~i-~Hpnv~~~G~iCl~~L 94 (150)
.-- -....+.+|+||+++-
T Consensus 98 eLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp GGTTT-SSBCCCCBB---TT
T ss_pred ccCCchhhhhcCceEeeecc
Confidence 532 2345678999999865
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00011 Score=59.97 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=63.5
Q ss_pred eCCCCCCCCCCeEEEEEe--cCCCCCCCCCeEEEecc-----CcccccCCCCcEEeccCCCCCCCCCCCCCCCCCCCc-c
Q 031910 43 IGPPDTLYEGGFFNAIMT--FPDNYPVSPPTVRFTSE-----MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP-V 114 (150)
Q Consensus 43 ~gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P-~ 114 (150)
.|---.+|.|.+|.+-|. +.+.||..||.+..... -.|-+|+.+|+|.|..| ..|.| +
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL--------------h~W~~ps 121 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL--------------HNWDPPS 121 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh--------------ccCCCcc
Confidence 343345788988876655 69999999999977543 14899999999999999 68987 6
Q ss_pred CcHHHHHHHHHHhhcCCccccC
Q 031910 115 HTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 115 ~~l~~il~~I~~~l~~~~~~~~ 136 (150)
..|..++..+.+.|.++.|-+-
T Consensus 122 sdLv~Liq~l~a~f~~~pP~ys 143 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFSEDPPVYS 143 (365)
T ss_pred chHHHHHHHHHHHhcCCCcccc
Confidence 7999999999998887666543
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.9e-05 Score=56.17 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCC----------eEEEEEecCCCCCCCCCeEEEe
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRFT 75 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~ 75 (150)
-.+||++||+.|- .+...+.++-..|.-.-..++||-|-|. .|.+++.+|-.||..+|.+...
T Consensus 28 wvqrlkeey~sli-------~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 28 WVQRLKEEYQSLI-------AYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHH-------HHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 3689999999883 2222234444556555555888888774 3566777899999999999765
Q ss_pred ccC-cccccCCCCcEEeccC
Q 031910 76 SEM-WHPNVYPDGKVCISIL 94 (150)
Q Consensus 76 t~i-~Hpnv~~~G~iCl~~L 94 (150)
.-- -.-..+.+|+||+..-
T Consensus 101 eldgktakmyrggkiclt~h 120 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLTDH 120 (167)
T ss_pred ccCchhhhhhcCceEeeccc
Confidence 421 1234567999999644
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.48 E-value=0.0019 Score=45.80 Aligned_cols=103 Identities=15% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCeEEEecCCCCcceEEEEEeC--CCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCCCCcE--EeccCC-CC
Q 031910 23 DGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKV--CISILH-PP 97 (150)
Q Consensus 23 ~~i~~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~i--Cl~~L~-~~ 97 (150)
.|+.++.+ .+.-..|.+ |.| -+.+.|....-.+-|.+|+.||..+|.+.+..+-.... .+|.+ |-+... ..
T Consensus 12 ~g~~~E~v-~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETV-TEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEE-EeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence 46777766 333455655 555 55667999999999999999999999988887633211 23445 555443 22
Q ss_pred CCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhc
Q 031910 98 GDDPNGYELATERWTPVH-TAASVWRSLSPGVL 129 (150)
Q Consensus 98 ~~~~~~~~~~~~~W~P~~-~l~~il~~I~~~l~ 129 (150)
+-.-.+|+-|...|.|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 444556888899999977 89999988887775
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.65 E-value=0.0084 Score=40.65 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeC--CCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccC
Q 031910 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (150)
Q Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 78 (150)
.+.+.|+..|+.--...+ ... +..+...+.+.+.. ...+.-....+++.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467888888877555444 112 23445566666632 2333344568999999999999999999887753
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.16 E-value=0.081 Score=35.44 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=28.0
Q ss_pred eEEEEEeCCCC-CCCCCCeEEEEEecCCCCCCCCCeEEEecc
Q 031910 37 EWSVSIIGPPD-TLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 37 ~w~~~i~gp~~-tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
.+.+.+....+ +.-....+.+.+.||++||..+|.|.+.+.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45555542211 122345688999999999999999988763
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.60 E-value=0.018 Score=42.70 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=49.2
Q ss_pred EEEecCCCCCCCCCeEEEeccCc---ccccCCC-----CcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhh
Q 031910 57 AIMTFPDNYPVSPPTVRFTSEMW---HPNVYPD-----GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV 128 (150)
Q Consensus 57 ~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l 128 (150)
+.|.|+.+||..+|.|.+..+.| +||++.. .++|+.--. ...|.++.++..+|..|...|
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHHHHHHH
Confidence 56899999999999877766532 4777665 679996554 378999999999999998887
Q ss_pred cC
Q 031910 129 LN 130 (150)
Q Consensus 129 ~~ 130 (150)
..
T Consensus 125 ~~ 126 (162)
T PF14457_consen 125 RD 126 (162)
T ss_pred HH
Confidence 43
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.78 E-value=0.24 Score=40.10 Aligned_cols=93 Identities=14% Similarity=0.292 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCcccccCCC
Q 031910 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (150)
Q Consensus 7 ~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 86 (150)
..+|.+|+.++..+.. +.+. . ++++....+++... .....++|.++.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~-d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-F-DDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E--CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHhccccc--eEEe-c-CCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 3578888888865543 2222 2 46778888887621 245678999999999999976433321
Q ss_pred CcEEeccCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcCCccccC
Q 031910 87 GKVCISILHPPGDDPNGYELATERWTP-VHTAASVWRSLSPGVLNYAWFLM 136 (150)
Q Consensus 87 G~iCl~~L~~~~~~~~~~~~~~~~W~P-~~~l~~il~~I~~~l~~~~~~~~ 136 (150)
.+ ...|.+ ..++.+++.+.+..|..-.+|..
T Consensus 163 -----~~--------------~~~w~~~~ssL~~v~~qF~~~le~lq~fw~ 194 (291)
T PF09765_consen 163 -----PF--------------SLSWSPSQSSLKDVVQQFQEALESLQEFWD 194 (291)
T ss_dssp ------H--------------HHHHHCHT-SHHHHHHHHHHHHHHTHHHHH
T ss_pred -----ch--------------hhhhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 11 157998 77999999999988877666654
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.85 E-value=12 Score=34.47 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCC-CCCeEEEecc
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV-SPPTVRFTSE 77 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 77 (150)
..+-|.+|+.-|-. ..+.+.++..| -.-..-.+.+.||--..-..-..++.|.||.+||. .+|.+.|..+
T Consensus 421 ~pQnLgeE~S~Ig~-k~~nV~fEkid-va~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGV-KIRNVNFEKID-VADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhc-cccccceEeec-cccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34557777776632 33455566552 22345556666654433222345788999999999 5788888765
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=75.66 E-value=13 Score=28.86 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCC--CCCCCCeEEEEEecCCCCCCCCCeEEEe
Q 031910 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPD--TLYEGGFFNAIMTFPDNYPVSPPTVRFT 75 (150)
Q Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 75 (150)
.-..+|+..|....+..+... .+.+...+.++|.-..+ .-+.+ .+.+.+.++++||.++|-|.+.
T Consensus 5 EeQe~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 335567777766555544211 12333336666652111 12222 7889999999999999999443
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=72.62 E-value=12 Score=31.08 Aligned_cols=67 Identities=22% Similarity=0.437 Sum_probs=46.7
Q ss_pred cceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEec-cCcccccCCCCcEEeccCCCCCCCCCCCCCCCCCCCc
Q 031910 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS-EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP 113 (150)
Q Consensus 35 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpnv~~~G~iCl~~L~~~~~~~~~~~~~~~~W~P 113 (150)
...+.+.| ||.|...+-+|.|-..||..||.+.|-. .-|+|... . +..| .+|++
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L--------------~~Wd~ 107 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL--------------VNWDP 107 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh--------------hcCCC
Confidence 34566665 6899999999999999999999999963 34777421 1 2334 67877
Q ss_pred cC--cHHHHHHHHHH
Q 031910 114 VH--TAASVWRSLSP 126 (150)
Q Consensus 114 ~~--~l~~il~~I~~ 126 (150)
.- .+..++..++.
T Consensus 108 ~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 108 SDPNCLLNLISELRQ 122 (333)
T ss_pred CCchHHHHHHHHHHH
Confidence 54 55566665543
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=70.21 E-value=5.7 Score=29.62 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=15.3
Q ss_pred ccCcc---cccCCCCcEEeccCC
Q 031910 76 SEMWH---PNVYPDGKVCISILH 95 (150)
Q Consensus 76 t~i~H---pnv~~~G~iCl~~L~ 95 (150)
|++|| +||+.+|+||+.-..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~ 112 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS 112 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc
Confidence 44566 699999999997653
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=65.77 E-value=6.1 Score=22.72 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhC
Q 031910 6 ASLLLQKQLKDLCKN 20 (150)
Q Consensus 6 a~~RL~kEl~~l~~~ 20 (150)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999754
No 41
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=56.65 E-value=54 Score=24.30 Aligned_cols=111 Identities=13% Similarity=0.215 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhCC----CCCeEEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEecc-------
Q 031910 9 LLQKQLKDLCKNP----VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE------- 77 (150)
Q Consensus 9 RL~kEl~~l~~~~----~~~i~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~------- 77 (150)
..-+|++.+.... ..|+.+.. .+.-...+.+..|+-.|-- -...+++.| .+|-..||.|.|+.+
T Consensus 9 kFdR~V~~~~~~~~a~r~rgwfLiq---a~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp~T~~~~~ 83 (177)
T PF14455_consen 9 KFDRQVGRFRPRADAYRMRGWFLIQ---ASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDPFTGTPLA 83 (177)
T ss_pred HHHHHHhhhhhhhhHhhhcCeEEEE---ccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEeccccCCccc
Confidence 3456666665433 24565432 3444444555445555521 224566667 589999999999877
Q ss_pred -----------------------Cccc----------ccCC-CCc--EEeccCCCCCCCCCCCCCCCCCC-----CccCc
Q 031910 78 -----------------------MWHP----------NVYP-DGK--VCISILHPPGDDPNGYELATERW-----TPVHT 116 (150)
Q Consensus 78 -----------------------i~Hp----------nv~~-~G~--iCl~~L~~~~~~~~~~~~~~~~W-----~P~~~ 116 (150)
++|+ .-++ +|+ +||.-.. +++.+-+-..+.| +..++
T Consensus 84 ~k~l~~~mlr~~~L~~app~~~~~l~qq~~~s~~~~~~ah~~~~~pF~Cm~G~r---EYH~h~sH~gd~W~~~Rgsg~~~ 160 (177)
T PF14455_consen 84 RKDLGLKMLRRPHLPGAPPEMISVLMQQQALSLQDFLSAHPNTGRPFLCMRGVR---EYHTHPSHTGDLWLLHRGSGEGD 160 (177)
T ss_pred ccccchhhhhcCCCCCCCchhhhhcccccchhhhhhccCCCCCCCcEEEeccch---hhcCCcccccchHhhhcccCCch
Confidence 1222 0011 344 7886654 4555555556677 45678
Q ss_pred HHHHHHHHHHh
Q 031910 117 AASVWRSLSPG 127 (150)
Q Consensus 117 l~~il~~I~~~ 127 (150)
+.-||.+|...
T Consensus 161 L~~Il~qiw~~ 171 (177)
T PF14455_consen 161 LGGILDQIWRA 171 (177)
T ss_pred hHHHHHHHHHh
Confidence 88888887643
No 42
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=51.81 E-value=8.1 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=13.8
Q ss_pred cCcc---cccCCCCcEEeccC
Q 031910 77 EMWH---PNVYPDGKVCISIL 94 (150)
Q Consensus 77 ~i~H---pnv~~~G~iCl~~L 94 (150)
++|| .||+.+|+||+.-.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eeccCCcCccCCCCeEeeCCC
Confidence 3566 59999999999644
No 43
>PRK11700 hypothetical protein; Provisional
Probab=51.55 E-value=1.1e+02 Score=23.38 Aligned_cols=93 Identities=18% Similarity=0.385 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHh----hCCCCC--eEE-EecCCCCcceEEEEEe---CCCCCCC-CCCeEEEEEecC---------
Q 031910 3 KSQASLLLQKQLKDLC----KNPVDG--FSA-GLVDESNVFEWSVSII---GPPDTLY-EGGFFNAIMTFP--------- 62 (150)
Q Consensus 3 s~~a~~RL~kEl~~l~----~~~~~~--i~~-~~~~~~n~~~w~~~i~---gp~~tpy-~gg~f~~~i~fp--------- 62 (150)
+...++|+++.+.+.- .+...| |.+ .....-.+..|.+.+. -|.+.-| ..|.=|+++++|
T Consensus 49 ~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~ 128 (187)
T PRK11700 49 QNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDAR 128 (187)
T ss_pred CHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHH
Confidence 3456778888877643 233334 333 3322335556766543 2444433 447889999988
Q ss_pred -----CCCCCCCCeEEEec--c------CcccccC-CCCcEEeccCC
Q 031910 63 -----DNYPVSPPTVRFTS--E------MWHPNVY-PDGKVCISILH 95 (150)
Q Consensus 63 -----~~YP~~pP~v~f~t--~------i~Hpnv~-~~G~iCl~~L~ 95 (150)
++.+..++-|++.. | .-.|-|- .+|.+|+.+--
T Consensus 129 ~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~HP 175 (187)
T PRK11700 129 ALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFHP 175 (187)
T ss_pred HHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEcC
Confidence 34455555555543 3 4556663 58999998763
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=50.19 E-value=27 Score=25.06 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCC-CCCCeEEEec
Q 031910 51 EGGFFNAIMTFPDNYP-VSPPTVRFTS 76 (150)
Q Consensus 51 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 76 (150)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3489999999999999 9999998865
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=46.27 E-value=32 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCCeEEEEEecCCCCCCCCCeEEEec
Q 031910 51 EGGFFNAIMTFPDNYPVSPPTVRFTS 76 (150)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t 76 (150)
+.|.|.|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 34889999999999999999998865
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=41.90 E-value=34 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCCCCCCCeEEEec
Q 031910 53 GFFNAIMTFPDNYPVSPPTVRFTS 76 (150)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~v~f~t 76 (150)
=.|-++|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788899999999999999987
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=40.79 E-value=34 Score=28.17 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCCCCCCCeEEEecc
Q 031910 53 GFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
-.+.+.+..++.||.+.|.|++..+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678899999999999999999876
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=39.61 E-value=49 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCCC-----CCCCeEEEec
Q 031910 52 GGFFNAIMTFPDNYP-----VSPPTVRFTS 76 (150)
Q Consensus 52 gg~f~~~i~fp~~YP-----~~pP~v~f~t 76 (150)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998865
No 49
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.53 E-value=69 Score=24.37 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCC
Q 031910 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDT 48 (150)
Q Consensus 6 a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~t 48 (150)
..+||++|++.+.++-...++.-|. =+....+.+.+....++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~-Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPL-LEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccc-ccceeEEEEEEEeCCCc
Confidence 5689999999999988777877775 45567888888755443
No 50
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=33.38 E-value=14 Score=34.13 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCCCCCCeEEEecc
Q 031910 54 FFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 54 ~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
+=-+.|.+|.|||..+|.+.+.+.
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp ------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHH
Confidence 334789999999999999877554
No 51
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=33.17 E-value=1.1e+02 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=28.8
Q ss_pred CcceEEEEEeCCCCCCCCC---CeEEEEEecC-----CCCCCCCCeEEEeccCcc
Q 031910 34 NVFEWSVSIIGPPDTLYEG---GFFNAIMTFP-----DNYPVSPPTVRFTSEMWH 80 (150)
Q Consensus 34 n~~~w~~~i~gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 80 (150)
|..-|.+.....+.-.-+| +.|+.++.++ .|-||+||+|..+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 3344665555322222233 3455666664 788999999999998553
No 52
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=32.21 E-value=1.5e+02 Score=19.36 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCCeEEEeccCc
Q 031910 36 FEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79 (150)
Q Consensus 36 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 79 (150)
+.|.+-+.|+.+.-...-+=++...+.++|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999877754444555677788888764 6655555533
No 53
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=31.73 E-value=1.5e+02 Score=19.77 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCeEEEecc
Q 031910 50 YEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 50 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (150)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 689988865
No 54
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=29.57 E-value=38 Score=20.77 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=12.6
Q ss_pred CCCCccCcHHHHHHHHHHhh
Q 031910 109 ERWTPVHTAASVWRSLSPGV 128 (150)
Q Consensus 109 ~~W~P~~~l~~il~~I~~~l 128 (150)
=+|.|.++|.++|.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 37999999999998776543
No 55
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.37 E-value=28 Score=26.57 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhh
Q 031910 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV 128 (150)
Q Consensus 86 ~G~iCl~~L~~~~~~~~~~~~~~~~W~P~~~l~~il~~I~~~l 128 (150)
.+..|+++|+ ..|+|.+|++.-+.-++.++
T Consensus 135 ~~~f~~sIlD-------------r~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILD-------------RYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHH-------------hhhCCCCCHHHHHHHHHHHH
Confidence 5679999997 89999999988776665443
No 56
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.27 E-value=38 Score=20.89 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 031910 7 SLLLQKQLKDL 17 (150)
Q Consensus 7 ~~RL~kEl~~l 17 (150)
.+||+|||+++
T Consensus 36 r~rL~kEL~d~ 46 (59)
T PF12065_consen 36 RQRLRKELQDM 46 (59)
T ss_pred HHHHHHHHHHc
Confidence 46899999988
No 57
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=27.68 E-value=60 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=20.6
Q ss_pred CCCcceEEEEEeCCCCCCCCC-CeEEEEEec
Q 031910 32 ESNVFEWSVSIIGPPDTLYEG-GFFNAIMTF 61 (150)
Q Consensus 32 ~~n~~~w~~~i~gp~~tpy~g-g~f~~~i~f 61 (150)
..|...|.|++.|++||+... .+|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 467778899999999988754 344444333
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.54 E-value=94 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCCC-----CCCeEEEec
Q 031910 52 GGFFNAIMTFPDNYPV-----SPPTVRFTS 76 (150)
Q Consensus 52 gg~f~~~i~fp~~YP~-----~pP~v~f~t 76 (150)
.|.|.|+-..|-.||. .||.|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4789999999999998 888877654
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=25.96 E-value=1.1e+02 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.0
Q ss_pred CCeEEEEEecCCCCCC-----CCCeEEEec
Q 031910 52 GGFFNAIMTFPDNYPV-----SPPTVRFTS 76 (150)
Q Consensus 52 gg~f~~~i~fp~~YP~-----~pP~v~f~t 76 (150)
.|.|.|.-.+|--||. .||.|.|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3789999999999995 777776643
No 60
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=24.33 E-value=24 Score=18.95 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=9.9
Q ss_pred CcccccCCCCc-EEeccC
Q 031910 78 MWHPNVYPDGK-VCISIL 94 (150)
Q Consensus 78 i~Hpnv~~~G~-iCl~~L 94 (150)
.|||.++.+|+ .|....
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999999887 455443
No 61
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=2e+02 Score=24.72 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.0
Q ss_pred eEEEEEecCCCCCC
Q 031910 54 FFNAIMTFPDNYPV 67 (150)
Q Consensus 54 ~f~~~i~fp~~YP~ 67 (150)
...+.++||.+|+.
T Consensus 210 ~k~i~vtFP~dy~a 223 (441)
T COG0544 210 EKDIKVTFPEDYHA 223 (441)
T ss_pred eeEEEEEcccccch
Confidence 46688999999997
No 62
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=20.86 E-value=2.3e+02 Score=24.09 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCcceEEEE--EeCCCCCCCCCCeEE---------EEEecCCCCCCCCCeEEEecc
Q 031910 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVS--IIGPPDTLYEGGFFN---------AIMTFPDNYPVSPPTVRFTSE 77 (150)
Q Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~--i~gp~~tpy~gg~f~---------~~i~fp~~YP~~pP~v~f~t~ 77 (150)
.+..|.++|....|..-.+... .. |.+. |. ...-|..+.++ +. .|...|++.||-++....
T Consensus 249 ~ne~Ev~Rir~eHPdd~~~vv~-~~----~RvkG~L~--vsRAfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~ 320 (390)
T KOG0700|consen 249 SNEDEVRRIRSEHPDDPHIVVN-KH----WRVKGILQ--VSRAFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPS 320 (390)
T ss_pred ccHHHHHHHHHhCCCCcceEee-cc----ceeeEEEE--eeeeccceeecchhhccchhHh-hcCCCCCCCCCceeccce
Confidence 4677888888777765444433 21 5332 22 11123223222 12 678899999999999999
Q ss_pred CcccccCCCCcE
Q 031910 78 MWHPNVYPDGKV 89 (150)
Q Consensus 78 i~Hpnv~~~G~i 89 (150)
+.|..+.++-++
T Consensus 321 i~~HrL~p~DkF 332 (390)
T KOG0700|consen 321 ITHHKLTPNDKF 332 (390)
T ss_pred EEEEEcCCCCeE
Confidence 988888776654
No 63
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=20.83 E-value=2.7e+02 Score=18.51 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCC
Q 031910 2 AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDT 48 (150)
Q Consensus 2 as~~a~~RL~kEl~~l~~~~~~~i~~~~~~~~n~~~w~~~i~gp~~t 48 (150)
.+.....+|.+++.++.......+.+.+.... ..-...+.|++++
T Consensus 39 l~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~~--~~~~~~~iG~~~~ 83 (89)
T COG1343 39 LTPADLEKLKRRLKKIIDEDEDSIRIYPLRRR--AARTREVIGPEKS 83 (89)
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEEEccch--hhccceeccCCCC
Confidence 35567789999999998877778887776332 2223345565544
No 64
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=20.66 E-value=1.7e+02 Score=22.70 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhh
Q 031910 5 QASLLLQKQLKDLCK 19 (150)
Q Consensus 5 ~a~~RL~kEl~~l~~ 19 (150)
++..||.+.++++++
T Consensus 9 s~~eR~~e~~~~~k~ 23 (235)
T PF14135_consen 9 SPAERINEALAEYKK 23 (235)
T ss_pred CHHHHHHHHHHHHHH
Confidence 466888877666653
Done!