BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031911
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82204|RL281_ARATH 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1
SV=1
Length = 143
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/143 (75%), Positives = 126/143 (88%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALA 120
KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 121 RLSAVNRSLKVSKSGVKKRNRQA 143
RLSA+++ L+V+KSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143
>sp|Q9M0E2|RL282_ARATH 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2
SV=1
Length = 143
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 107/143 (74%), Positives = 124/143 (86%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALA 120
GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61 AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120
Query: 121 RLSAVNRSLKVSKSGVKKRNRQA 143
RLSA+++ L+V+KSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143
>sp|P46779|RL28_HUMAN 60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3
Length = 137
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 6 GQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKD 65
L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 3 AHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADG 57
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+
Sbjct: 58 KGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 126 NRSLK 130
RS K
Sbjct: 118 LRSQK 122
>sp|P41105|RL28_MOUSE 60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2
Length = 137
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 6 GQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKD 65
L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 3 AHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADG 57
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+
Sbjct: 58 KGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 126 NRSLK 130
RS K
Sbjct: 118 LRSQK 122
>sp|Q3T0L7|RL28_BOVIN 60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3
Length = 137
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 6 GQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKD 65
L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 3 AHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADG 57
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+
Sbjct: 58 KGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 126 NRSLK 130
RS K
Sbjct: 118 LRSQK 122
>sp|Q962T2|RL28_SPOFR 60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2
SV=1
Length = 139
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 4 VPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QP 61
+ L W I++ NN FLVK+ N FSKEPNN+ NLNS++++GL +K V + P
Sbjct: 1 MSSHLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENP 57
Query: 62 GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVAD----NYYRPDLKKA 117
K +VV AK NKPA K+ +R++F A+ + +V N+YR DL KA
Sbjct: 58 DRKGFTVVYKKAKA--TNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKA 111
Query: 118 ALARLSAVNRS 128
L R SA+ RS
Sbjct: 112 TLRRASAILRS 122
>sp|P17702|RL28_RAT 60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4
Length = 137
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 6 GQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ--PGG 63
L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++ P G
Sbjct: 3 AHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDG 57
Query: 64 KDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLS 123
K + VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R S
Sbjct: 58 KGVVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 115
Query: 124 AVNRSLK 130
A+ RS K
Sbjct: 116 AILRSQK 122
>sp|O14069|RL28E_SCHPO Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpl28e PE=1 SV=1
Length = 134
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 3 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
+V LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q
Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 57
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAAL 119
V++ K KPA L K + R K++ ++ YR DL K ++
Sbjct: 58 ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 117
Query: 120 ARLSAV 125
AR SA+
Sbjct: 118 ARASAI 123
>sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=2
SV=1
Length = 144
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ +
Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVV 56
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEF---PRMA-KAVVNQVADNYYRPDLKK 116
P K K +PA K+T+R +F PR + K + N + + YR DL +
Sbjct: 57 PAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQ 112
Query: 117 AALARLSAVNRSLK 130
AAL R SAV RS K
Sbjct: 113 AALRRASAVLRSQK 126
>sp|Q9GS21|RL28_DICDI 60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2
SV=1
Length = 132
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 7 QLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKD 65
L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK
Sbjct: 4 DLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK- 57
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125
VV+++ KK PA +T R V +A Y P+L+ AAL RL V
Sbjct: 58 --VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQYA-PELRAAALGRLHRV 114
Query: 126 NRSLK 130
+L+
Sbjct: 115 QSALR 119
>sp|Q21930|RL28_CAEEL 60S ribosomal protein L28 OS=Caenorhabditis elegans GN=rpl-28 PE=1
SV=3
Length = 126
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L+W++++ N+ FL Q G G FS E NL +NS K+SGLAN+ + + K
Sbjct: 5 LVWQVIRNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAK--G 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV++T K +PA + ST+ K A V ++A N K A R +A+ R
Sbjct: 60 VVVSTKNEK--GRPAKAVTTSTLSK----TPVASVRRLAKNAGFNKFNKLAQRRAAAIVR 113
Query: 128 SLKVSKSGVKK 138
S +V K+ V+K
Sbjct: 114 S-QVKKAKVQK 123
>sp|P0DJ20|RL28_TETTH 60S ribosomal protein L28 OS=Tetrahymena thermophila GN=RPL28 PE=1
SV=1
Length = 134
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 7 QLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKD- 65
QL+WEIVK NN FLVK N V F+ +P ++ N+ G +R V ++ G K
Sbjct: 3 QLVWEIVKNNNAFLVK-----NNGVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAKQA 57
Query: 66 LSVVLATAKTKKQNKPASLLHKS-TMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSA 124
++ L ++ K K ++ ++ T++ R+AK + + + LK+ AL +L
Sbjct: 58 IATSLRKNQSHKVKKTGTIEAETLTVKGGVQRVAKVIRGR----FQSKGLKQFALKKLVN 113
Query: 125 VNRS 128
+R+
Sbjct: 114 FHRA 117
>sp|A1KAI4|GCP_AZOSB Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Azoarcus sp. (strain BH72) GN=gcp PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDL 114
PGG LS + A + P +LH F + AV+N+V+ + + P L
Sbjct: 179 PGGPQLSALAAQGCAGRFKLPRPMLHSGDFDFSFSGLKTAVLNRVSSDDWEPGL 232
>sp|Q9FYH1|HAC2_ARATH Histone acetyltransferase HAC2 OS=Arabidopsis thaliana GN=HAC2 PE=2
SV=2
Length = 1367
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 60 QPGGKDLSVVLATAKTKKQNKP-ASLLHKSTMRKEFPRMAKAVV 102
+P G L VV + +T NK ASLLHK EFP +K ++
Sbjct: 823 EPEGLTLRVVFSADRTLTVNKQFASLLHKENFPSEFPYRSKVIL 866
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1
Length = 922
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 34 SKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKE 93
+++P N F GLA +T + + V++ T + K Q + +LHK+ +
Sbjct: 284 TQKPKRQSNTFPFFSDGLARSRTAQEKVAALEQQVLMLTKELKSQKELVIILHKALEAAQ 343
Query: 94 FPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVPVRK 150
+ A + ++ R +L + + +++ +N+ ++ + G R R A + +R+
Sbjct: 344 QEKRASSAYLAATEDRDRLELVRHKVRQIAELNQRVEALEQG---RERLAHEAGLRE 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,385,102
Number of Sequences: 539616
Number of extensions: 1793620
Number of successful extensions: 5824
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5801
Number of HSP's gapped (non-prelim): 33
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)