Query 031911
Match_columns 150
No_of_seqs 105 out of 269
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpza1 a.35.1.5 (A:2-58) Puri 42.5 9.4 0.00069 22.5 2.8 26 95-120 29-54 (57)
2 d2hsga1 a.35.1.5 (A:2-58) Gluc 23.3 23 0.0016 20.7 2.1 25 95-119 30-54 (57)
3 d1efaa1 a.35.1.5 (A:2-60) Lac 23.1 22 0.0016 21.0 2.0 27 94-120 30-56 (59)
4 d1ewsa_ g.9.1.1 (A:) Alpha-def 14.9 28 0.002 18.0 0.9 13 48-60 18-30 (32)
5 d1smye_ a.143.1.1 (E:) RNA pol 10.5 84 0.0061 20.0 2.5 22 108-131 14-35 (95)
6 d2qsba1 a.29.14.1 (A:2-86) Unc 7.7 1E+02 0.0076 19.3 2.1 30 88-117 22-51 (85)
7 d1jhfa1 a.4.5.2 (A:2-72) LexA 7.5 1.2E+02 0.0086 17.6 2.2 28 91-118 4-31 (71)
8 d2zjr41 g.42.1.1 (4:1-37) Ribo 6.5 68 0.0049 17.3 0.6 19 16-37 12-30 (37)
9 d1yb0a1 d.118.1.1 (A:1-157) N- 6.3 1.9E+02 0.014 18.9 3.1 38 19-62 55-92 (157)
10 d1eh9a2 b.71.1.1 (A:491-557) G 6.1 96 0.007 18.7 1.2 14 9-22 12-25 (67)
No 1
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=42.54 E-value=9.4 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHccCCCHhHHHHHHH
Q 031911 95 PRMAKAVVNQVADNYYRPDLKKAALA 120 (150)
Q Consensus 95 R~~~k~I~~~~~~~~yR~DL~~~Al~ 120 (150)
..+-+.|...+..-+|+||....+|+
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 29 EETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 44566677777777899999887775
No 2
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.25 E-value=23 Score=20.67 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHccCCCHhHHHHHH
Q 031911 95 PRMAKAVVNQVADNYYRPDLKKAAL 119 (150)
Q Consensus 95 R~~~k~I~~~~~~~~yR~DL~~~Al 119 (150)
.++-+.|...+..-+|+||....+|
T Consensus 30 ~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 30 PSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 4455667777777789999866555
No 3
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.14 E-value=22 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHccCCCHhHHHHHHH
Q 031911 94 FPRMAKAVVNQVADNYYRPDLKKAALA 120 (150)
Q Consensus 94 ~R~~~k~I~~~~~~~~yR~DL~~~Al~ 120 (150)
...+.+.|...+.+-+|+||....+|+
T Consensus 30 s~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 30 SAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp CTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 345667777777778899998776653
No 4
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=14.88 E-value=28 Score=18.02 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=9.7
Q ss_pred ccCcccceeeeEE
Q 031911 48 HSGLANRKTVTIQ 60 (150)
Q Consensus 48 ysGLan~Kav~V~ 60 (150)
.+||.|+|+|--+
T Consensus 18 scglfnskyiccr 30 (32)
T d1ewsa_ 18 SCGLFNSKYICCR 30 (32)
T ss_dssp CCSSSSCSEEEEE
T ss_pred ccccccceeEEec
Confidence 4788898888644
No 5
>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus thermophilus [TaxId: 274]}
Probab=10.51 E-value=84 Score=20.03 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.9
Q ss_pred cCCCHhHHHHHHHHHHHHHhhcCC
Q 031911 108 NYYRPDLKKAALARLSAVNRSLKV 131 (150)
Q Consensus 108 ~~yR~DL~~~Al~RaSai~rsqk~ 131 (150)
..|| |.-..-+||.+++||+-+
T Consensus 14 SkYR--LsvVvakRA~QlLr~g~~ 35 (95)
T d1smye_ 14 SKYR--LTVVVAKRAQQLLRHGFK 35 (95)
T ss_dssp SHHH--HHHHHHHHHHHHHHTCTT
T ss_pred ccee--eehhhHHHHHHHHHcCCC
Confidence 4577 999999999999999865
No 6
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.69 E-value=1e+02 Score=19.31 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.8
Q ss_pred eeecCChhHHHHHHHHHHHccCCCHhHHHH
Q 031911 88 STMRKEFPRMAKAVVNQVADNYYRPDLKKA 117 (150)
Q Consensus 88 ~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~ 117 (150)
.++.+|-|+++..+...+....|-+|++.+
T Consensus 22 ~sVPRNIRr~a~e~~~~L~n~~~~~~vRaa 51 (85)
T d2qsba1 22 ITVPKNVRKVAQDSKAKLSQENESLDLRCA 51 (85)
T ss_dssp TTSCHHHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHCCCcchhHHHH
Confidence 456788999998888888877888888764
No 7
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=7.53 E-value=1.2e+02 Score=17.62 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=22.8
Q ss_pred cCChhHHHHHHHHHHHccCCCHhHHHHH
Q 031911 91 RKEFPRMAKAVVNQVADNYYRPDLKKAA 118 (150)
Q Consensus 91 ~k~~R~~~k~I~~~~~~~~yR~DL~~~A 118 (150)
+.--++++..|+..+..++|=|-++..|
T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~Ps~rei~ 31 (71)
T d1jhfa1 4 TARQQEVFDLIRDHISQTGMPPTRAEIA 31 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3345678999999999999999888765
No 8
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.51 E-value=68 Score=17.30 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=12.5
Q ss_pred CceeEEeecCCCCCccccccCC
Q 031911 16 NNCFLVKQFGRGNASVEFSKEP 37 (150)
Q Consensus 16 nnsFl~K~~~~~~~~~~FS~EP 37 (150)
.+|++++++|.- ...+.+|
T Consensus 12 ~~C~virR~g~v---~ViC~np 30 (37)
T d2zjr41 12 DNCKVVRRHGRV---LVICSNV 30 (37)
T ss_dssp TTCCCEECSSCE---EECCSSS
T ss_pred cCceEEEeCCEE---EEEeCCC
Confidence 478999988742 3456555
No 9
>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus anthracis [TaxId: 1392]}
Probab=6.28 E-value=1.9e+02 Score=18.94 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=29.9
Q ss_pred eEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeC
Q 031911 19 FLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPG 62 (150)
Q Consensus 19 Fl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~ 62 (150)
|++...+ ..-.-|.|-.+-|...++|-.|..+|||+..
T Consensus 55 y~I~dg~------i~q~~p~~~~awHag~~~~~~N~~sIGIE~~ 92 (157)
T d1yb0a1 55 VAVDDKQ------AIQGIPWERNAWACGDGNGPGNRESISVEIC 92 (157)
T ss_dssp EEECSSC------EEECSCTTBCCSCSSCSSSHHHHHEEEEEET
T ss_pred EEecccc------eeeeeeccceeeeeecccccCCceEEEEEEe
Confidence 7775332 4556778999999988888889999999975
No 10
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=6.12 E-value=96 Score=18.67 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.4
Q ss_pred hheeeecCceeEEe
Q 031911 9 IWEIVKKNNCFLVK 22 (150)
Q Consensus 9 ~W~ivr~nnsFl~K 22 (150)
.|++|+.+-+|++=
T Consensus 12 ~Wl~i~~~~~l~v~ 25 (67)
T d1eh9a2 12 NWLIIKGREYFSLY 25 (67)
T ss_dssp TEEEEECSSCCEEE
T ss_pred eEEEEcCCcEEEEE
Confidence 59999998888764
Done!