BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031912
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 54/88 (61%)
Query: 34 IEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQY 93
I+ L LGS AA + D LK +THIL VA + A +DF YK I + D +TN+ Y
Sbjct: 7 IKPWLLLGSQDAAHDLDTLKKNKVTHILNVAYGVENAFLSDFTYKSISILDLPETNILSY 66
Query: 94 FDECISFIDEAKRQRGGVLVHCFAGRSR 121
F EC FI+EAKR+ G VLVH AG SR
Sbjct: 67 FPECFEFIEEAKRKDGVVLVHSNAGVSR 94
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPN------DFVYKVIGVAD 84
P +I L+LGS ++N ++L I +IL V P PN DF YK I ++D
Sbjct: 3 PVQILPNLYLGSARDSANLESLAKLGIRYILNVT----PNLPNFFEKNGDFHYKQIPISD 58
Query: 85 KEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
NLS++F E I FIDEA Q GVLVHC AG SR
Sbjct: 59 HWSQNLSRFFPEAIEFIDEALSQNCGVLVHCLAGVSR 95
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPN--DFVYKVIGVADKEDT 88
P EI L+LG ++N D L+ I +IL V L N +F YK I ++D
Sbjct: 4 PVEILPFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPISDHWSQ 63
Query: 89 NLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
NLSQ+F E ISFIDEA+ + GVLVH AG SR
Sbjct: 64 NLSQFFPEAISFIDEARGKNCGVLVHSLAGISR 96
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPN------DFVYKVIGVAD 84
P +I L+LGS ++N ++L I +IL V P PN DF YK I ++D
Sbjct: 6 PVQILPNLYLGSARDSANLESLAKLGIRYILNVT----PNLPNFFEKNGDFHYKQIPISD 61
Query: 85 KEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
NLS++F E I FIDEA Q GVLVH AG SR
Sbjct: 62 HWSQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSR 98
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNL 90
P EI LFLGS +S+ L++ IT +L V+ + F YK I V D + +
Sbjct: 4 PVEILPYLFLGSCSHSSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEI 63
Query: 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
S +F E I FID K G VLVH AG SR
Sbjct: 64 SAWFQEAIGFIDWVKNSGGRVLVHSQAGISR 94
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNL 90
P EI L+LGS A+ +D L + IT +L V++ + YK I V D ++
Sbjct: 4 PVEILPFLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADI 63
Query: 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
S +F E I +ID K RG VLVH AG SR
Sbjct: 64 SSWFMEAIEYIDAVKDCRGRVLVHSQAGISR 94
>pdb|2NT2|A Chain A, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|B Chain B, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|C Chain C, Crystal Structure Of Slingshot Phosphatase 2
Length = 145
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNL 90
P +I + +FLGS ASN + L++R + +IL V + P F Y I V D+E T+L
Sbjct: 4 PTQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDL 63
Query: 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
Y+++ FI +AK+ LVH G SR
Sbjct: 64 LAYWNDTYKFISKAKKHGSKCLVHSKMGVSR 94
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 37 GLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDE 96
GL+LG+ A + D L ITHI+++ + P D Y I VAD + + ++F E
Sbjct: 14 GLYLGNFIDAKDLDQLGRNKITHIISIHESPQPLL-QDITYLRIPVADTPEVPIKKHFKE 72
Query: 97 CISFIDEAKRQRGGVLVHCFAGRSR 121
CI+FI + G LVH FAG SR
Sbjct: 73 CINFIHCCRLNGGNCLVHSFAGISR 97
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQ 92
+I GL++G+ A + + L +THIL+V ++ P Y I AD NL++
Sbjct: 9 KILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSARPM-LEGVKYLCIPAADSPSQNLTR 67
Query: 93 YFDECISFIDEAKRQRGGVLVHCFAGRSR 121
+F E I FI E + + LVHC AG SR
Sbjct: 68 HFKESIKFIHECRLRGESCLVHCLAGVSR 96
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNL 90
P EI L+LGS AS + L + +IT +L V+ + A YK I V D ++
Sbjct: 6 PVEILPFLYLGSAYHASKCEFLANLHITALLNVSRRTSEACMTHLHYKWIPVEDSHTADI 65
Query: 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
S +F E I FID + + G VLVH AG SR
Sbjct: 66 SSHFQEAIDFIDCVREKGGKVLVHSEAGISR 96
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQ 92
+I LFLG ASN+ L++R IT I+ + + F Y + +AD +
Sbjct: 28 QITSSLFLGRGSVASNRHLLQARGITCIVNATIEIPNFNWPQFEYVKVPLADMPHAPIGL 87
Query: 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRRCHL 125
YFD I R+ G LVHC AG SR L
Sbjct: 88 YFDTVADKIHSVSRKHGATLVHCAAGVSRSATL 120
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 33 EIEQGLFLGSIGAA--SNKDALKSRNITHILTV-----ANALAPAHPNDFVYKVIGVADK 85
EI GLFLG +A S L+ ITHI+ + AN + P F Y V+ +AD
Sbjct: 8 EILPGLFLGPYSSAMKSKLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADN 67
Query: 86 EDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
N+ ++F FID + + G VLVH AG SR
Sbjct: 68 PVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISR 103
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPND---------FVYKVIGVA 83
E+ +++G+ A + L+ ITH+L A + H N Y I
Sbjct: 31 EVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAN 90
Query: 84 DKEDTNLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSR 121
D ++ NLS YF+ FID+A Q+ G VLVHC G SR
Sbjct: 91 DTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSR 129
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPND---------FVYKVIGVA 83
E+ +++G+ A + L+ ITH+L A + H N Y I
Sbjct: 30 EVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAN 89
Query: 84 DKEDTNLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSR 121
D ++ NLS YF+ FID+A Q+ G VLVHC G SR
Sbjct: 90 DTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSR 128
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQ 92
+I + L++ + AA+NK L S IT ++ V+ + D Y + VAD ++ L
Sbjct: 22 QITKSLYISNGVAANNKLMLSSNQITMVINVSVEVVNTLYEDIQYMQVPVADSPNSRLCD 81
Query: 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRRCHL 125
+FD I + ++G L+HC AG SR L
Sbjct: 82 FFDPIADHIHSVEMKQGRTLLHCAAGVSRSAAL 114
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPND---------FVYKVIGVA 83
E+ +++G+ A + L+ ITH+L A + H N Y I
Sbjct: 31 EVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAN 90
Query: 84 DKEDTNLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRRCHLFPHLGYFSM 134
D ++ NLS YF+ FID+A Q+ G VLVH G SR L + Y M
Sbjct: 91 DTQEFNLSAYFERAADFIDQALAQKNGRVLVHSREGYSRSPTLV--IAYLMM 140
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFV-----YKVIGVADKED 87
E+ GL+LG A+N+ L+ ITH+L +++ P + Y + D
Sbjct: 4 EVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPA 63
Query: 88 TNLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRRCHL 125
++S +F FI A Q GG +LVHC G SR L
Sbjct: 64 FDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATL 102
>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
Length = 160
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFV-----YKVIGVADKED 87
E+ GL+LG A+N+ L+ ITH+L +++ P + Y + D
Sbjct: 5 EVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPA 64
Query: 88 TNLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRRCHL 125
++S +F FI A Q GG +LVH G SR L
Sbjct: 65 FDMSIHFQTAADFIHRALSQPGGKILVHSAVGVSRSATL 103
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 38 LFLGSIGAASNKDALKSRNITHILTVANALAPAHPND--FVYKVIGVADKEDTNLSQYFD 95
LFLG+ A + D ++ NI +++ V L H F YK + D NL QYF+
Sbjct: 11 LFLGNEQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFE 70
Query: 96 ECISFIDEAKRQRGGVLVHCFAGRSR 121
E FI+EA + G+L+HC AG SR
Sbjct: 71 EAFEFIEEAHQCGKGLLIHCQAGVSR 96
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 38 LFLGSIGAASNKDALKSRNITHILTVANALAPAHPND--FVYKVIGVADKEDTNLSQYFD 95
LFLG+ A + D ++ NI +++ V L H F YK + D NL QYF+
Sbjct: 15 LFLGNEQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFE 74
Query: 96 ECISFIDEAKRQRGGVLVHCFAGRSR 121
E FI+EA + G+L+HC AG SR
Sbjct: 75 EAFEFIEEAHQCGKGLLIHCQAGVSR 100
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANA-----LAPAHPNDFVYKVIGV-ADKE 86
E+ L++G A ++ L+ TH+L A+ P + D + GV AD
Sbjct: 56 EVWPKLYIGDEATALDRYRLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDL 115
Query: 87 DT-NLSQYFDECISFIDEA-KRQRGGVLVHCFAGRSRRCHL 125
T +LS +F +FID A +LVHC GRSR L
Sbjct: 116 PTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATL 156
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 80 IGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
I + D T++S+YFD+ +F+ + ++ VLVHC AG +R
Sbjct: 76 IPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCVAGVNR 117
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 80 IGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
I + D T++S+YFD+ +F+ + ++ VLVHC AG +R
Sbjct: 97 IPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNR 138
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVA-------DK 85
E+ LFLG AA +K L ITH++ A Y+ + + D
Sbjct: 48 EVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDN 107
Query: 86 EDTNLSQYFDECISFIDEA-KRQRGGVLVHCFAGRSRRCHL 125
+LS YF +I A +G VLVHC G SR L
Sbjct: 108 PFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATL 148
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVA-------DK 85
E+ LFLG AA +K L ITH++ A Y+ + + D
Sbjct: 48 EVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDN 107
Query: 86 EDTNLSQYFDECISFIDEA-KRQRGGVLVHCFAGRSRRCHL 125
+LS YF +I A +G VLVHC G SR L
Sbjct: 108 PFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATL 148
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 80 IGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
I + D T++S+YFD+ +F+ + ++ VLVH AG +R
Sbjct: 80 IPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHSAAGVNR 121
>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity
Phosphatase Complexed With Zinc Tungstate, New York
Structural Genomics Consortium
Length = 164
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 31 PF-EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTN 89
PF + LF+G+ AA + L IT + V+ + V D +
Sbjct: 11 PFARVAPALFIGNARAAGATELLVRAGITLCVNVSRQQPGPRAPGVAELRVPVFDDPAED 70
Query: 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
L + + + ++ A R G LV+C GRSR
Sbjct: 71 LLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSR 102
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNL 90
P +I Q + LGS A N D + + NI+ IL V + + + + +E L
Sbjct: 10 PTQIIQYIHLGSFLNAHNVDYIHNNNISSILLVGIEVPSLFKDQCDILRLDIVSEEGHQL 69
Query: 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSR 121
I FI + +++ GVL+ G ++
Sbjct: 70 YDSIPNAIKFIIRSIQRKEGVLIISGTGVNK 100
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 3 QMDNAYRNQIAAILRVLNLTTCLREDRVPFEIEQGLFL------GSIGAAS--NKDALKS 54
Q+D Y+ +A + + C+ + +P +E FL +GA+S +LK+
Sbjct: 664 QVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKT 723
Query: 55 RNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVL 112
+T L +++ P+ V+ + D Y + IS D AKR G ++
Sbjct: 724 LPLTAELAYNSSVVFNFPSKQQSMVLHIQD-------LYKENGISLSDLAKRHMGKIV 774
>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|D Chain D, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|I Chain I, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|J Chain J, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 240
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 67 LAPAHP---------NDFVYKVIGVADKEDTNLSQYFDECISFID 102
LAP HP + F Y+++ DK Q FDE IS +D
Sbjct: 169 LAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELD 213
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 38 LFLGSIG-------AASNKDALKSRNITHIL-TVANALAPAHPNDFVYKVIGVADKEDTN 89
LF G +G AS + A+K N+ + L T + L + N FVYKV V DK T
Sbjct: 16 LFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT- 74
Query: 90 LSQYFDECI 98
+S + CI
Sbjct: 75 VSGLPEPCI 83
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 38 LFLGSIG-------AASNKDALKSRNITHIL-TVANALAPAHPNDFVYKVIGVADKEDTN 89
LF G +G AS + A+K N+ + L T + L + N FVYKV V DK T
Sbjct: 17 LFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMT- 75
Query: 90 LSQYFDECI 98
+S + CI
Sbjct: 76 VSGLPEPCI 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,180,656
Number of Sequences: 62578
Number of extensions: 155808
Number of successful extensions: 434
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 32
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)