Query 031912
Match_columns 150
No_of_seqs 170 out of 1079
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 2.3E-31 5E-36 183.9 14.6 117 31-149 1-124 (138)
2 KOG1717 Dual specificity phosp 100.0 9.6E-32 2.1E-36 198.9 9.9 120 28-149 169-297 (343)
3 KOG1718 Dual specificity phosp 100.0 2.5E-30 5.5E-35 179.8 11.7 118 29-148 15-139 (198)
4 KOG1716 Dual specificity phosp 100.0 6.6E-29 1.4E-33 190.5 13.0 119 29-149 73-201 (285)
5 cd00127 DSPc Dual specificity 100.0 8.1E-28 1.8E-32 165.9 14.9 116 31-148 2-126 (139)
6 PF00782 DSPc: Dual specificit 100.0 4.4E-28 9.5E-33 166.3 10.7 108 38-148 1-118 (133)
7 PRK12361 hypothetical protein; 99.9 1.8E-25 4E-30 184.8 16.8 118 29-149 93-222 (547)
8 KOG1719 Dual specificity phosp 99.8 9.7E-21 2.1E-25 130.3 9.2 113 33-147 27-153 (183)
9 PTZ00242 protein tyrosine phos 99.8 6.9E-20 1.5E-24 130.4 11.9 113 31-146 11-141 (166)
10 PTZ00393 protein tyrosine phos 99.8 7.2E-20 1.6E-24 135.5 10.2 97 48-147 108-213 (241)
11 COG2453 CDC14 Predicted protei 99.7 3.1E-16 6.7E-21 113.1 9.2 71 72-145 70-148 (180)
12 KOG1720 Protein tyrosine phosp 99.6 1E-14 2.2E-19 105.3 11.0 92 50-145 88-189 (225)
13 PF05706 CDKN3: Cyclin-depende 99.5 5.7E-14 1.2E-18 98.8 6.4 94 37-133 42-156 (168)
14 PF03162 Y_phosphatase2: Tyros 99.4 8.9E-14 1.9E-18 98.8 4.8 96 31-128 7-111 (164)
15 TIGR01244 conserved hypothetic 99.4 3.2E-12 6.9E-17 88.1 11.8 90 32-127 3-104 (135)
16 PF04273 DUF442: Putative phos 99.4 6.6E-13 1.4E-17 88.3 7.3 89 32-126 3-103 (110)
17 KOG2836 Protein tyrosine phosp 99.4 7.9E-12 1.7E-16 84.7 10.1 95 49-145 34-138 (173)
18 PLN02727 NAD kinase 99.2 2.4E-10 5.2E-15 97.9 10.5 92 37-133 262-364 (986)
19 smart00012 PTPc_DSPc Protein t 99.1 2.5E-10 5.4E-15 74.2 7.8 68 77-146 5-88 (105)
20 smart00404 PTPc_motif Protein 99.1 2.5E-10 5.4E-15 74.2 7.8 68 77-146 5-88 (105)
21 KOG1572 Predicted protein tyro 98.9 7.9E-09 1.7E-13 76.3 9.1 97 32-130 61-170 (249)
22 PF13350 Y_phosphatase3: Tyros 98.9 5.8E-09 1.2E-13 74.0 7.4 95 33-127 15-143 (164)
23 cd00047 PTPc Protein tyrosine 98.9 1E-08 2.2E-13 76.3 7.7 52 93-146 149-214 (231)
24 COG3453 Uncharacterized protei 98.9 1.4E-08 2.9E-13 67.6 7.3 86 32-124 4-102 (130)
25 smart00194 PTPc Protein tyrosi 98.8 1.5E-08 3.3E-13 76.6 7.4 51 94-146 178-241 (258)
26 COG5350 Predicted protein tyro 98.7 3.3E-07 7.1E-12 63.6 9.1 98 49-147 25-138 (172)
27 PHA02742 protein tyrosine phos 98.6 1.2E-07 2.6E-12 73.6 7.8 38 108-146 229-277 (303)
28 PHA02740 protein tyrosine phos 98.6 2.1E-07 4.5E-12 72.1 8.2 38 108-146 221-269 (298)
29 PF14566 PTPlike_phytase: Inos 98.6 1.5E-07 3.2E-12 65.9 6.1 58 72-133 90-147 (149)
30 PHA02746 protein tyrosine phos 98.6 2.3E-07 4.9E-12 72.7 7.3 37 109-146 248-295 (323)
31 PF04179 Init_tRNA_PT: Initiat 98.5 7.3E-07 1.6E-11 72.5 9.9 98 34-133 292-399 (451)
32 PHA02747 protein tyrosine phos 98.5 3.1E-07 6.6E-12 71.7 6.4 37 109-146 230-277 (312)
33 PHA02738 hypothetical protein; 98.4 5.7E-07 1.2E-11 70.4 6.8 38 108-146 227-275 (320)
34 PF00102 Y_phosphatase: Protei 98.4 4.3E-07 9.3E-12 67.1 5.4 51 94-146 152-218 (235)
35 KOG0792 Protein tyrosine phosp 98.4 8.8E-07 1.9E-11 76.9 7.5 67 79-145 1030-1110(1144)
36 KOG2283 Clathrin coat dissocia 98.4 7.1E-07 1.5E-11 72.2 6.3 86 56-144 53-149 (434)
37 COG5599 PTP2 Protein tyrosine 98.3 1.3E-06 2.8E-11 65.8 5.1 97 29-133 139-242 (302)
38 PRK15375 pathogenicity island 98.2 4.6E-06 1E-10 68.1 7.8 34 111-146 469-510 (535)
39 KOG0790 Protein tyrosine phosp 98.0 8.5E-06 1.8E-10 65.4 5.0 96 49-146 373-502 (600)
40 COG2365 Protein tyrosine/serin 97.9 2.3E-05 5.1E-10 59.3 5.7 35 94-128 121-156 (249)
41 KOG0789 Protein tyrosine phosp 97.7 0.0001 2.2E-09 59.2 6.5 38 107-145 298-347 (415)
42 KOG0793 Protein tyrosine phosp 97.6 0.00045 9.7E-09 58.5 8.4 40 107-147 926-977 (1004)
43 KOG0791 Protein tyrosine phosp 97.3 0.00053 1.2E-08 54.0 5.8 22 107-128 286-307 (374)
44 KOG2386 mRNA capping enzyme, g 97.2 0.00089 1.9E-08 53.5 6.0 97 49-147 54-168 (393)
45 KOG4228 Protein tyrosine phosp 96.9 0.0012 2.5E-08 58.4 4.3 46 82-127 700-749 (1087)
46 KOG4228 Protein tyrosine phosp 96.5 0.0074 1.6E-07 53.6 6.2 38 108-146 1018-1066(1087)
47 KOG4471 Phosphatidylinositol 3 96.4 0.0082 1.8E-07 50.2 5.7 39 95-134 361-399 (717)
48 PF06602 Myotub-related: Myotu 95.3 0.055 1.2E-06 43.1 6.0 28 106-134 229-256 (353)
49 KOG1089 Myotubularin-related p 94.9 0.079 1.7E-06 44.4 5.9 37 96-133 331-368 (573)
50 cd01518 RHOD_YceA Member of th 93.9 0.13 2.8E-06 32.9 4.3 20 106-126 59-78 (101)
51 COG0607 PspE Rhodanese-related 93.0 0.21 4.6E-06 32.1 4.2 63 52-126 15-78 (110)
52 PRK10886 DnaA initiator-associ 90.8 0.48 1E-05 34.6 4.3 36 90-128 23-58 (196)
53 COG0279 GmhA Phosphoheptose is 89.9 2.2 4.8E-05 30.5 6.8 34 90-126 23-56 (176)
54 cd01522 RHOD_1 Member of the R 88.5 2.1 4.5E-05 28.2 5.8 21 105-126 61-81 (117)
55 PF14671 DSPn: Dual specificit 86.6 3.9 8.4E-05 28.4 6.3 98 33-145 2-112 (141)
56 PLN02160 thiosulfate sulfurtra 83.3 1.9 4.2E-05 29.4 3.7 21 105-126 78-98 (136)
57 cd01443 Cdc25_Acr2p Cdc25 enzy 83.2 4.9 0.00011 26.1 5.5 20 107-126 65-84 (113)
58 PRK00414 gmhA phosphoheptose i 83.1 1.8 3.8E-05 31.4 3.6 34 90-126 26-59 (192)
59 cd01520 RHOD_YbbB Member of th 80.4 3.2 6.9E-05 27.8 3.8 22 105-126 83-104 (128)
60 cd01523 RHOD_Lact_B Member of 80.0 1.7 3.8E-05 27.5 2.4 20 106-126 59-78 (100)
61 PRK05728 DNA polymerase III su 78.9 3.8 8.3E-05 28.2 3.9 26 93-118 14-39 (142)
62 COG2927 HolC DNA polymerase II 78.4 2.8 6E-05 29.2 3.0 23 95-117 16-38 (144)
63 PRK13938 phosphoheptose isomer 78.3 5.9 0.00013 28.9 5.0 38 88-128 25-62 (196)
64 cd01533 4RHOD_Repeat_2 Member 77.4 4.1 9E-05 26.2 3.6 17 107-124 65-81 (109)
65 PRK00142 putative rhodanese-re 76.9 4.2 9.2E-05 31.9 4.1 19 107-126 170-188 (314)
66 cd01531 Acr2p Eukaryotic arsen 75.5 8.3 0.00018 24.9 4.7 21 106-126 60-80 (113)
67 PF04364 DNA_pol3_chi: DNA pol 75.2 4.6 0.0001 27.6 3.5 24 94-117 15-38 (137)
68 PRK01415 hypothetical protein; 75.2 4.2 9.1E-05 30.9 3.5 20 106-126 169-188 (247)
69 PRK06646 DNA polymerase III su 75.0 5.5 0.00012 28.0 3.9 26 93-118 14-39 (154)
70 PF13580 SIS_2: SIS domain; PD 75.0 9.3 0.0002 25.9 5.0 33 91-126 18-50 (138)
71 cd01528 RHOD_2 Member of the R 73.0 6.8 0.00015 24.7 3.7 19 107-126 57-75 (101)
72 TIGR00853 pts-lac PTS system, 72.8 3.2 6.9E-05 26.6 2.1 13 108-120 3-15 (95)
73 cd01448 TST_Repeat_1 Thiosulfa 72.7 8 0.00017 25.3 4.1 21 105-126 76-96 (122)
74 PF00581 Rhodanese: Rhodanese- 72.6 18 0.00039 22.7 5.7 72 54-126 10-84 (113)
75 PF03668 ATP_bind_2: P-loop AT 72.0 9.5 0.00021 29.6 4.8 18 110-127 244-261 (284)
76 PRK10287 thiosulfate:cyanide s 71.9 14 0.00031 23.9 5.1 19 107-126 59-77 (104)
77 cd05006 SIS_GmhA Phosphoheptos 71.2 15 0.00033 25.9 5.5 34 91-127 16-49 (177)
78 PRK05416 glmZ(sRNA)-inactivati 70.4 11 0.00024 29.3 4.9 34 94-127 224-264 (288)
79 PRK06036 translation initiatio 70.2 5.9 0.00013 31.5 3.4 19 105-123 145-163 (339)
80 cd05567 PTS_IIB_mannitol PTS_I 69.9 4.2 9E-05 25.4 2.1 15 109-123 1-15 (87)
81 TIGR03167 tRNA_sel_U_synt tRNA 68.7 8.9 0.00019 30.1 4.1 20 107-126 73-92 (311)
82 PRK11784 tRNA 2-selenouridine 66.3 7.2 0.00016 31.1 3.2 20 107-126 87-106 (345)
83 COG1054 Predicted sulfurtransf 65.6 35 0.00075 26.8 6.7 78 33-120 104-184 (308)
84 cd01534 4RHOD_Repeat_3 Member 63.5 7.3 0.00016 24.3 2.3 19 107-126 55-73 (95)
85 PF10302 DUF2407: DUF2407 ubiq 63.0 4.2 9.2E-05 26.3 1.2 10 109-118 86-95 (97)
86 cd01447 Polysulfide_ST Polysul 61.6 7.3 0.00016 24.4 2.1 19 105-124 58-76 (103)
87 PRK07411 hypothetical protein; 60.9 8 0.00017 31.3 2.6 19 107-126 341-359 (390)
88 PF06415 iPGM_N: BPG-independe 59.9 18 0.00038 27.1 4.1 47 82-133 36-84 (223)
89 cd01526 RHOD_ThiF Member of th 59.7 9.6 0.00021 25.1 2.5 20 106-126 70-89 (122)
90 TIGR03865 PQQ_CXXCW PQQ-depend 59.5 7.6 0.00016 27.3 2.0 21 106-126 114-134 (162)
91 cd01529 4RHOD_Repeats Member o 59.5 7.9 0.00017 24.2 2.0 20 106-126 54-73 (96)
92 PF02302 PTS_IIB: PTS system, 59.2 6.2 0.00013 24.4 1.4 15 110-124 1-15 (90)
93 cd01530 Cdc25 Cdc25 phosphatas 59.1 8.5 0.00019 25.5 2.2 20 106-126 66-86 (121)
94 cd01519 RHOD_HSP67B2 Member of 56.6 9.4 0.0002 24.1 2.0 18 107-125 65-82 (106)
95 COG1660 Predicted P-loop-conta 56.5 26 0.00057 27.1 4.5 22 106-127 238-262 (286)
96 cd01444 GlpE_ST GlpE sulfurtra 55.8 22 0.00048 21.8 3.6 20 105-125 53-72 (96)
97 PRK05772 translation initiatio 55.5 15 0.00034 29.5 3.4 15 105-119 164-178 (363)
98 PRK13936 phosphoheptose isomer 55.4 38 0.00083 24.5 5.2 32 92-126 27-58 (197)
99 PRK09590 celB cellobiose phosp 54.9 8.2 0.00018 25.2 1.5 14 109-122 2-15 (104)
100 cd01525 RHOD_Kc Member of the 54.6 12 0.00026 23.6 2.2 18 108-126 65-82 (105)
101 cd01532 4RHOD_Repeat_1 Member 53.9 21 0.00045 22.1 3.2 20 107-126 49-68 (92)
102 PRK01269 tRNA s(4)U8 sulfurtra 53.5 10 0.00022 31.5 2.2 21 105-126 446-466 (482)
103 cd01527 RHOD_YgaP Member of th 53.1 14 0.0003 23.1 2.3 21 105-126 51-71 (99)
104 PRK13937 phosphoheptose isomer 52.6 48 0.001 23.7 5.3 33 91-126 21-53 (188)
105 PRK10310 PTS system galactitol 50.6 12 0.00026 23.8 1.7 16 109-124 3-18 (94)
106 PRK10499 PTS system N,N'-diace 50.5 14 0.0003 24.1 2.0 15 108-122 3-17 (106)
107 PRK05320 rhodanese superfamily 50.4 27 0.00059 26.6 3.9 19 107-126 174-192 (257)
108 COG2897 SseA Rhodanese-related 50.1 11 0.00024 29.2 1.8 27 105-132 231-257 (285)
109 PRK02947 hypothetical protein; 50.0 35 0.00076 25.7 4.4 33 91-126 23-55 (246)
110 TIGR02981 phageshock_pspE phag 49.7 14 0.00031 23.7 2.0 19 107-126 57-75 (101)
111 COG0794 GutQ Predicted sugar p 49.5 46 0.001 24.6 4.8 29 93-127 27-55 (202)
112 cd05564 PTS_IIB_chitobiose_lic 48.8 13 0.00028 23.7 1.6 13 110-122 1-13 (96)
113 cd01720 Sm_D2 The eukaryotic S 48.7 14 0.00031 23.3 1.8 30 98-127 4-33 (87)
114 COG0182 Predicted translation 48.7 12 0.00026 29.7 1.7 14 105-118 147-160 (346)
115 PF02571 CbiJ: Precorrin-6x re 48.6 14 0.00031 28.0 2.1 76 37-114 46-136 (249)
116 PRK05333 NAD-dependent deacety 48.4 20 0.00044 27.6 3.0 22 104-125 15-36 (285)
117 PF09419 PGP_phosphatase: Mito 47.9 16 0.00035 26.1 2.1 31 30-61 13-45 (168)
118 COG4738 Predicted transcriptio 47.8 18 0.0004 24.1 2.2 16 116-133 22-37 (124)
119 PRK06371 translation initiatio 46.6 23 0.00049 28.2 3.0 22 98-119 127-148 (329)
120 cd02071 MM_CoA_mut_B12_BD meth 46.5 43 0.00094 22.1 4.0 31 37-67 83-113 (122)
121 smart00450 RHOD Rhodanese Homo 45.4 34 0.00073 20.6 3.2 19 105-124 53-71 (100)
122 cd01521 RHOD_PspE2 Member of t 44.4 19 0.00042 23.1 2.0 22 105-126 61-83 (110)
123 PRK00162 glpE thiosulfate sulf 43.8 48 0.001 21.0 3.8 19 105-124 55-73 (108)
124 TIGR00512 salvage_mtnA S-methy 43.2 30 0.00065 27.5 3.2 14 105-118 140-157 (331)
125 PRK05720 mtnA methylthioribose 43.0 29 0.00063 27.7 3.1 18 105-122 144-161 (344)
126 PRK08334 translation initiatio 42.0 26 0.00057 28.1 2.7 12 107-119 160-171 (356)
127 TIGR03642 cas_csx13 CRISPR-ass 41.8 1.1E+02 0.0023 20.8 5.3 55 77-133 56-112 (124)
128 KOG1905 Class IV sirtuins (SIR 41.0 45 0.00098 26.3 3.8 35 90-124 37-71 (353)
129 PF06838 Met_gamma_lyase: Meth 40.3 1.3E+02 0.0027 24.7 6.2 65 72-147 126-191 (403)
130 KOG0235 Phosphoglycerate mutas 39.8 49 0.0011 24.6 3.7 35 88-122 132-170 (214)
131 KOG1530 Rhodanese-related sulf 39.7 44 0.00095 23.0 3.1 71 52-125 33-105 (136)
132 PRK08335 translation initiatio 39.4 30 0.00065 26.8 2.6 15 104-118 106-120 (275)
133 cd01449 TST_Repeat_2 Thiosulfa 39.1 21 0.00045 23.0 1.6 20 106-126 76-95 (118)
134 PF08840 BAAT_C: BAAT / Acyl-C 37.4 30 0.00065 25.3 2.3 33 92-127 4-37 (213)
135 TIGR00524 eIF-2B_rel eIF-2B al 36.7 41 0.00089 26.3 3.1 14 105-118 116-129 (303)
136 PF09707 Cas_Cas2CT1978: CRISP 36.3 18 0.0004 22.8 0.9 18 29-46 19-36 (86)
137 cd00158 RHOD Rhodanese Homolog 35.4 37 0.0008 20.1 2.2 19 105-124 47-65 (89)
138 COG1440 CelA Phosphotransferas 35.3 30 0.00065 22.6 1.7 14 109-122 2-15 (102)
139 PF13378 MR_MLE_C: Enolase C-t 35.2 46 0.001 21.3 2.7 23 94-116 32-54 (111)
140 PRK00481 NAD-dependent deacety 35.1 39 0.00085 25.3 2.6 22 103-124 8-29 (242)
141 PF09623 Cas_NE0113: CRISPR-as 34.8 1.1E+02 0.0023 23.0 4.8 53 79-133 81-134 (224)
142 cd05566 PTS_IIB_galactitol PTS 34.8 35 0.00075 21.0 2.0 18 109-126 1-18 (89)
143 TIGR00640 acid_CoA_mut_C methy 34.5 40 0.00087 22.9 2.4 29 38-66 87-115 (132)
144 PF14532 Sigma54_activ_2: Sigm 34.4 1.1E+02 0.0023 20.4 4.5 32 93-124 6-37 (138)
145 TIGR00753 undec_PP_bacA undeca 34.1 41 0.00089 25.7 2.6 11 117-127 160-170 (255)
146 PF02673 BacA: Bacitracin resi 34.1 42 0.00091 25.7 2.7 11 117-127 160-170 (259)
147 PF05582 Peptidase_U57: YabG p 34.0 22 0.00047 27.6 1.1 19 50-68 123-141 (287)
148 cd00133 PTS_IIB PTS_IIB: subun 33.7 29 0.00064 20.3 1.5 17 110-126 1-17 (84)
149 PRK09629 bifunctional thiosulf 33.4 56 0.0012 28.2 3.6 20 105-125 220-239 (610)
150 PRK14118 gpmA phosphoglyceromu 33.3 57 0.0012 24.1 3.3 36 87-122 148-187 (227)
151 PRK12554 undecaprenyl pyrophos 33.0 43 0.00094 25.9 2.6 11 117-127 166-176 (276)
152 TIGR02855 spore_yabG sporulati 32.1 24 0.00053 27.3 1.1 19 50-68 122-140 (283)
153 PF01904 DUF72: Protein of unk 32.0 2.1E+02 0.0046 21.2 7.1 69 49-117 135-213 (230)
154 cd05563 PTS_IIB_ascorbate PTS_ 31.9 40 0.00088 20.5 2.0 17 110-126 1-17 (86)
155 PRK14116 gpmA phosphoglyceromu 31.2 75 0.0016 23.4 3.6 35 88-122 150-188 (228)
156 COG3414 SgaB Phosphotransferas 30.9 39 0.00085 21.6 1.8 18 109-126 2-19 (93)
157 smart00488 DEXDc2 DEAD-like he 30.7 1.3E+02 0.0027 23.2 4.9 33 95-127 14-46 (289)
158 smart00489 DEXDc3 DEAD-like he 30.7 1.3E+02 0.0027 23.2 4.9 33 95-127 14-46 (289)
159 cd05565 PTS_IIB_lactose PTS_II 30.7 40 0.00086 21.8 1.8 15 110-126 2-16 (99)
160 PRK05600 thiamine biosynthesis 30.6 36 0.00078 27.4 1.9 17 109-126 333-349 (370)
161 PTZ00138 small nuclear ribonuc 30.1 61 0.0013 20.6 2.5 25 98-122 16-40 (89)
162 TIGR03569 NeuB_NnaB N-acetylne 29.9 53 0.0011 26.1 2.7 28 93-120 147-175 (329)
163 PRK00281 undecaprenyl pyrophos 29.9 53 0.0012 25.2 2.6 11 117-127 164-174 (268)
164 PF13344 Hydrolase_6: Haloacid 29.8 1E+02 0.0022 19.6 3.7 32 94-126 16-47 (101)
165 PRK10318 hypothetical protein; 29.3 71 0.0015 21.6 2.8 29 94-122 70-102 (121)
166 PF03102 NeuB: NeuB family; I 29.3 92 0.002 23.5 3.8 34 85-120 120-153 (241)
167 PRK10425 DNase TatD; Provision 28.8 67 0.0015 24.4 3.0 19 101-119 114-132 (258)
168 cd01524 RHOD_Pyr_redox Member 28.7 52 0.0011 20.0 2.1 19 105-124 48-66 (90)
169 COG0696 GpmI Phosphoglyceromut 28.6 1.2E+02 0.0026 25.6 4.6 41 91-133 123-165 (509)
170 TIGR01307 pgm_bpd_ind 2,3-bisp 28.4 1.3E+02 0.0028 25.4 4.8 53 76-133 107-162 (501)
171 COG0084 TatD Mg-dependent DNas 28.1 99 0.0022 23.6 3.8 26 94-119 111-136 (256)
172 cd01535 4RHOD_Repeat_4 Member 27.9 99 0.0021 21.1 3.5 17 106-123 47-63 (145)
173 PF01026 TatD_DNase: TatD rela 27.4 50 0.0011 24.7 2.1 20 100-119 116-135 (255)
174 TIGR03675 arCOG00543 arCOG0054 27.4 1.9E+02 0.0041 25.2 5.7 36 90-126 384-419 (630)
175 PRK11070 ssDNA exonuclease Rec 27.3 1.2E+02 0.0026 26.1 4.5 36 84-119 45-80 (575)
176 PRK15129 L-Ala-D/L-Glu epimera 27.3 60 0.0013 25.3 2.6 29 94-122 254-282 (321)
177 PRK05434 phosphoglyceromutase; 27.2 1.4E+02 0.0031 25.2 4.9 41 91-133 124-166 (507)
178 PLN02538 2,3-bisphosphoglycera 27.0 1.2E+02 0.0027 26.0 4.5 41 91-133 141-183 (558)
179 TIGR00441 gmhA phosphoheptose 26.8 60 0.0013 22.4 2.3 25 99-126 2-26 (154)
180 KOG3020 TatD-related DNase [Re 26.5 79 0.0017 24.8 3.0 25 94-118 159-184 (296)
181 PRK13107 preprotein translocas 26.5 1.3E+02 0.0027 27.5 4.6 30 88-117 429-458 (908)
182 COG1099 Predicted metal-depend 26.4 36 0.00079 25.7 1.1 33 35-68 4-36 (254)
183 PRK08535 translation initiatio 26.3 91 0.002 24.4 3.4 13 105-117 118-130 (310)
184 PRK14119 gpmA phosphoglyceromu 26.3 87 0.0019 23.0 3.2 36 87-122 149-188 (228)
185 TIGR02764 spore_ybaN_pdaB poly 26.2 45 0.00098 23.6 1.6 28 97-126 141-168 (191)
186 PRK13462 acid phosphatase; Pro 25.8 1.1E+02 0.0024 22.1 3.6 36 87-122 116-153 (203)
187 COG1107 Archaea-specific RecJ- 25.8 2.7E+02 0.0058 24.4 6.1 56 89-146 324-390 (715)
188 PF00288 GHMP_kinases_N: GHMP 25.6 78 0.0017 18.2 2.4 17 117-133 12-28 (67)
189 KOG4542 Predicted membrane pro 25.6 29 0.00062 22.0 0.4 25 32-56 61-85 (96)
190 COG3564 Uncharacterized protei 25.5 1.2E+02 0.0026 19.7 3.2 25 94-118 10-34 (116)
191 cd05007 SIS_Etherase N-acetylm 25.5 1.5E+02 0.0033 22.4 4.4 32 92-126 33-64 (257)
192 TIGR00197 yjeF_nterm yjeF N-te 25.3 1.7E+02 0.0036 21.3 4.5 28 99-126 36-63 (205)
193 COG1968 BacA Undecaprenyl pyro 25.3 73 0.0016 24.6 2.6 11 117-127 165-175 (270)
194 PF10740 DUF2529: Protein of u 25.2 1.3E+02 0.0029 21.6 3.8 26 92-117 22-47 (172)
195 TIGR01873 cas_CT1978 CRISPR-as 25.2 38 0.00083 21.4 0.9 18 29-46 19-36 (87)
196 cd00079 HELICc Helicase superf 25.2 1.8E+02 0.0039 18.3 4.3 26 92-117 12-37 (131)
197 PLN02723 3-mercaptopyruvate su 25.2 66 0.0014 25.2 2.5 15 105-119 266-280 (320)
198 KOG1529 Mercaptopyruvate sulfu 24.7 63 0.0014 25.1 2.2 27 100-126 228-254 (286)
199 KOG3985 Methylthioadenosine ph 24.4 2E+02 0.0043 21.9 4.7 71 47-119 76-175 (283)
200 PRK14117 gpmA phosphoglyceromu 24.2 1.1E+02 0.0023 22.7 3.3 35 88-122 150-188 (230)
201 PF08974 DUF1877: Domain of un 24.1 1.5E+02 0.0032 20.8 3.9 25 90-114 142-166 (167)
202 TIGR00511 ribulose_e2b2 ribose 23.9 1.1E+02 0.0024 23.8 3.5 13 105-117 113-125 (301)
203 COG2243 CobF Precorrin-2 methy 23.5 1.3E+02 0.0028 22.8 3.6 43 75-117 57-99 (234)
204 COG2089 SpsE Sialic acid synth 23.4 1.3E+02 0.0028 24.1 3.7 26 94-122 162-189 (347)
205 PF00676 E1_dh: Dehydrogenase 23.3 1.2E+02 0.0025 23.6 3.5 31 87-117 194-224 (300)
206 PF00270 DEAD: DEAD/DEAH box h 23.3 1.8E+02 0.0039 19.5 4.2 20 107-126 13-32 (169)
207 TIGR00644 recJ single-stranded 23.1 1.2E+02 0.0027 25.6 3.9 34 84-117 30-63 (539)
208 PRK14138 NAD-dependent deacety 23.1 79 0.0017 23.8 2.5 23 103-125 6-28 (244)
209 PF15192 TMEM213: TMEM213 fami 23.0 1.8E+02 0.0039 17.8 3.5 33 114-146 37-75 (82)
210 KOG0870 DNA polymerase epsilon 23.0 75 0.0016 22.7 2.1 47 99-148 18-67 (172)
211 cd02072 Glm_B12_BD B12 binding 22.9 1.1E+02 0.0024 20.7 3.0 26 38-63 84-115 (128)
212 PF04851 ResIII: Type III rest 22.8 2.5E+02 0.0054 18.9 5.5 36 92-127 6-44 (184)
213 PRK13104 secA preprotein trans 22.8 1.5E+02 0.0034 27.0 4.5 30 88-117 424-453 (896)
214 TIGR03586 PseI pseudaminic aci 22.7 88 0.0019 24.8 2.7 30 89-120 145-174 (327)
215 PRK11558 putative ssRNA endonu 22.5 47 0.001 21.5 1.0 18 29-46 21-38 (97)
216 cd00308 enolase_like Enolase-s 22.4 1.9E+02 0.0041 21.1 4.4 27 94-120 182-208 (229)
217 PRK12311 rpsB 30S ribosomal pr 22.0 1.5E+02 0.0033 23.6 3.9 27 91-117 42-68 (326)
218 COG0406 phoE Broad specificity 22.0 1.7E+02 0.0037 20.8 4.0 35 87-121 122-158 (208)
219 TIGR02584 cas_NE0113 CRISPR-as 22.0 2.9E+02 0.0062 20.6 5.0 38 94-133 103-140 (209)
220 PRK12326 preprotein translocas 21.9 2E+02 0.0042 25.8 4.8 28 88-115 407-434 (764)
221 PF03853 YjeF_N: YjeF-related 21.7 1.4E+02 0.003 20.9 3.4 32 96-127 11-44 (169)
222 TIGR01011 rpsB_bact ribosomal 21.6 1.6E+02 0.0036 21.9 3.9 27 91-117 45-71 (225)
223 TIGR00604 rad3 DNA repair heli 21.3 2.6E+02 0.0056 24.5 5.6 46 88-133 9-55 (705)
224 PRK08057 cobalt-precorrin-6x r 21.3 1.7E+02 0.0037 22.1 4.0 64 41-105 175-247 (248)
225 PF14417 MEDS: MEDS: MEthanoge 21.1 1.9E+02 0.004 20.6 4.0 27 91-117 30-56 (191)
226 KOG4513 Phosphoglycerate mutas 21.1 3.3E+02 0.0073 22.5 5.6 39 93-133 139-179 (531)
227 PF00076 RRM_1: RNA recognitio 21.1 75 0.0016 17.7 1.6 28 38-65 1-32 (70)
228 PRK11449 putative deoxyribonuc 21.0 2.2E+02 0.0048 21.5 4.6 24 94-117 113-136 (258)
229 PF04343 DUF488: Protein of un 21.0 2.5E+02 0.0055 18.3 6.8 34 50-83 7-53 (122)
230 TIGR00963 secA preprotein tran 20.9 2.2E+02 0.0048 25.4 5.0 28 89-116 386-413 (745)
231 COG0653 SecA Preprotein transl 20.9 1.4E+02 0.003 27.0 3.7 36 79-114 400-435 (822)
232 PF04309 G3P_antiterm: Glycero 20.8 1.5E+02 0.0033 21.3 3.4 27 100-126 36-64 (175)
233 COG0608 RecJ Single-stranded D 20.7 1.6E+02 0.0034 24.6 4.0 44 83-126 11-57 (491)
234 KOG1018 Cytosine deaminase FCY 20.7 1.3E+02 0.0029 21.4 3.1 25 91-115 12-41 (169)
235 cd01425 RPS2 Ribosomal protein 20.6 1.8E+02 0.0039 20.9 3.9 27 91-117 39-65 (193)
236 TIGR03848 MSMEG_4193 probable 20.6 1.7E+02 0.0037 20.8 3.8 35 88-122 117-158 (204)
237 PF02629 CoA_binding: CoA bind 20.5 52 0.0011 20.7 0.9 28 38-65 68-95 (96)
238 cd01310 TatD_DNAse TatD like p 20.1 2E+02 0.0044 20.8 4.2 20 99-118 112-131 (251)
239 COG1782 Predicted metal-depend 20.0 2.9E+02 0.0062 23.8 5.2 36 90-126 390-425 (637)
240 PRK08762 molybdopterin biosynt 20.0 1.4E+02 0.0031 23.9 3.5 20 106-126 55-74 (376)
241 PRK12570 N-acetylmuramic acid- 20.0 2.5E+02 0.0054 21.8 4.7 31 92-125 42-72 (296)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.98 E-value=2.3e-31 Score=183.88 Aligned_cols=117 Identities=37% Similarity=0.596 Sum_probs=108.4
Q ss_pred CeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCCCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 031912 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGG 110 (150)
Q Consensus 31 p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~ 110 (150)
|++|.|+||+|+.+++.+.+.++++||++|||++.+.+.....++.|+++|+.|.+..++.+.|..+++||+..+.+|++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGK 80 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCe
Confidence 78999999999999999999999999999999998876655788999999999987888888999999999999999999
Q ss_pred EEEEcCCCCcchhhHHHHHHHHH-------HHHHHHHhhcCCCCCC
Q 031912 111 VLVHCFAGRSRRCHLFPHLGYFS-------MIILVYSNDNRPSESG 149 (150)
Q Consensus 111 VLVHC~~G~sRS~~v~~~~aylm-------~~a~~~v~~~Rp~is~ 149 (150)
|||||.+|+|||++++ ++|+| .+|+++++++||.+..
T Consensus 81 VlVHC~~G~~RS~~v~--~~yl~~~~~~~~~~A~~~v~~~R~~~~p 124 (138)
T smart00195 81 VLVHCQAGVSRSATLI--IAYLMKYRNLSLNDAYDFVKDRRPIISP 124 (138)
T ss_pred EEEECCCCCchHHHHH--HHHHHHHhCCCHHHHHHHHHHHCCccCC
Confidence 9999999999999999 89999 3699999999998753
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=9.6e-32 Score=198.89 Aligned_cols=120 Identities=36% Similarity=0.587 Sum_probs=113.7
Q ss_pred CCCCeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCCC--CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHH
Q 031912 28 DRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH--PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (150)
Q Consensus 28 ~~~p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~~--~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~ 105 (150)
-.+|.+|+|+||+|+..++.+.+.|+++||++|||++...++.| ...+.|.+||+.|.-.+++.+.|++|+.||++++
T Consensus 169 a~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeAr 248 (343)
T KOG1717|consen 169 ASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEAR 248 (343)
T ss_pred cCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhh
Confidence 36899999999999999999999999999999999999998887 5567999999999999999999999999999999
Q ss_pred hCCCcEEEEcCCCCcchhhHHHHHHHHHH-------HHHHHHhhcCCCCCC
Q 031912 106 RQRGGVLVHCFAGRSRRCHLFPHLGYFSM-------IILVYSNDNRPSESG 149 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~~~~aylm~-------~a~~~v~~~Rp~is~ 149 (150)
.++..|||||-+|+|||+|++ +||||+ +||.+|+.++.+||.
T Consensus 249 sk~cgvLVHClaGISRSvTvt--vaYLMqkl~lslndAyd~Vk~kksnisP 297 (343)
T KOG1717|consen 249 SKNCGVLVHCLAGISRSVTVT--VAYLMQKLNLSLNDAYDFVKHKKSNISP 297 (343)
T ss_pred ccCCcEEEeeeccccchhHHH--HHHHHHHhccchhhHHHHHHHhccCCCC
Confidence 999999999999999999999 999995 599999999999985
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=2.5e-30 Score=179.82 Aligned_cols=118 Identities=29% Similarity=0.365 Sum_probs=111.0
Q ss_pred CCCeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCCCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCC
Q 031912 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQR 108 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~ 108 (150)
...+||+++|||++-..+.+...+++++||+|||.+.|.++....+++|..+|+.|.+...+.++|+.+.+.|+....+|
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g 94 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG 94 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC
Confidence 45689999999997777889999999999999999999988777899999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCcchhhHHHHHHHHH-------HHHHHHHhhcCCCCC
Q 031912 109 GGVLVHCFAGRSRRCHLFPHLGYFS-------MIILVYSNDNRPSES 148 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~~~~aylm-------~~a~~~v~~~Rp~is 148 (150)
|++||||.+|+|||+++| +|||| .+||.++|++||.|.
T Consensus 95 G~TLvHC~AGVSRSAsLC--lAYLmK~~~msLreAy~~vKa~RpiIR 139 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLC--LAYLMKYHCMSLREAYHWVKARRPIIR 139 (198)
T ss_pred CcEEEEEccccchhHHHH--HHHHHHHccchHHHHHHHHHhhCceeC
Confidence 999999999999999999 99999 479999999999885
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=6.6e-29 Score=190.53 Aligned_cols=119 Identities=38% Similarity=0.527 Sum_probs=111.3
Q ss_pred CCCeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC---CCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHH
Q 031912 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~---~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~ 105 (150)
..+++|.|+||+|+...+.+.+.+++.||++|+|+....+.. +..++.|+++|+.|.+..++.++|+++++||+.++
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999987764 24489999999999999999999999999999999
Q ss_pred hCCCcEEEEcCCCCcchhhHHHHHHHHH-------HHHHHHHhhcCCCCCC
Q 031912 106 RQRGGVLVHCFAGRSRRCHLFPHLGYFS-------MIILVYSNDNRPSESG 149 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~~~~aylm-------~~a~~~v~~~Rp~is~ 149 (150)
.+|++|||||.+|+|||+|++ +||+| .+||++|+++||+|+.
T Consensus 153 ~~~~~vlVHC~~GvSRSat~v--iAYlM~~~~~~l~~A~~~vk~~R~~i~P 201 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLV--IAYLMKYEGLSLEDAYELVKSRRPIISP 201 (285)
T ss_pred hCCCeEEEEcCCccchhHHHH--HHHHHHHcCCCHHHHHHHHHHhCCccCC
Confidence 999999999999999999999 99999 4799999999999963
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=8.1e-28 Score=165.85 Aligned_cols=116 Identities=41% Similarity=0.655 Sum_probs=106.6
Q ss_pred CeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCC--CCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCC
Q 031912 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQR 108 (150)
Q Consensus 31 p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~--~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~ 108 (150)
+++|.|+||+|+.+++.+.+.|++.||++|||++.+.+. ....++.|.++|+.|.+..++...++.+++||.....+|
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999987764 236789999999999998888888999999999999999
Q ss_pred CcEEEEcCCCCcchhhHHHHHHHHHH-------HHHHHHhhcCCCCC
Q 031912 109 GGVLVHCFAGRSRRCHLFPHLGYFSM-------IILVYSNDNRPSES 148 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~~~~aylm~-------~a~~~v~~~Rp~is 148 (150)
++|||||.+|.|||++++ ++|+|. +|+++++++||.+.
T Consensus 82 ~~vlVHC~~G~~Rs~~~~--~~~l~~~~~~~~~~a~~~vr~~r~~~~ 126 (139)
T cd00127 82 GKVLVHCLAGVSRSATLV--IAYLMKTLGLSLREAYEFVKSRRPIIS 126 (139)
T ss_pred CcEEEECCCCCchhHHHH--HHHHHHHcCCCHHHHHHHHHHHCCccC
Confidence 999999999999999999 899983 69999999999765
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=4.4e-28 Score=166.33 Aligned_cols=108 Identities=31% Similarity=0.501 Sum_probs=99.9
Q ss_pred eEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC---CCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 031912 38 LFLGSIGAASNKDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVH 114 (150)
Q Consensus 38 LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~---~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVH 114 (150)
||+|+.+.+. .+.++++||++|||++.+.+.. ...++.|+++|+.|....++.+.|+.+++||+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999999987752 36789999999999888888889999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHH-------HHHHHHhhcCCCCC
Q 031912 115 CFAGRSRRCHLFPHLGYFSM-------IILVYSNDNRPSES 148 (150)
Q Consensus 115 C~~G~sRS~~v~~~~aylm~-------~a~~~v~~~Rp~is 148 (150)
|.+|+|||++++ ++|||. +|+++++++||.+.
T Consensus 80 C~~G~~RS~~v~--~ayLm~~~~~~~~~A~~~v~~~rp~~~ 118 (133)
T PF00782_consen 80 CKAGLSRSGAVA--AAYLMKKNGMSLEEAIEYVRSRRPQIN 118 (133)
T ss_dssp ESSSSSHHHHHH--HHHHHHHHTSSHHHHHHHHHHHSTTST
T ss_pred eCCCcccchHHH--HHHHHHHcCCCHHHHHHHHHHHCCCCC
Confidence 999999999999 899994 59999999999875
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=184.81 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=104.8
Q ss_pred CCCeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCC----CCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHH
Q 031912 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP----AHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEA 104 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~----~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~ 104 (150)
+.+++|.|+||+|+.+.+.+.+.|+++||++|||++.+.+. .+..++.|+++|+.|...++. ++|+++++||++.
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999976542 235678999999999877665 5699999999999
Q ss_pred HhCCCcEEEEcCCCCcchhhHHHHHHHHH--------HHHHHHHhhcCCCCCC
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLFPHLGYFS--------MIILVYSNDNRPSESG 149 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~~~~aylm--------~~a~~~v~~~Rp~is~ 149 (150)
+++|++|||||.+|+|||++++ +|||| .+|+++||++||.|..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv--~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~ 222 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVL--AAYLLCKDPDLTVEEVLQQIKQIRKTARL 222 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHH--HHHHHHhccCCCHHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999 89999 3599999999998763
No 8
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.84 E-value=9.7e-21 Score=130.35 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=97.3
Q ss_pred eccCCeEEcChhhc-CCHHHHHhCCCceEEEcCCCCCCC-----C-CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHH
Q 031912 33 EIEQGLFLGSIGAA-SNKDALKSRNITHILTVANALAPA-----H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (150)
Q Consensus 33 ~I~~~LylG~~~~~-~~~~~l~~~gI~~Vvnl~~~~~~~-----~-~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~ 105 (150)
.+.+...+|..+.. ++.+.+++.|+..|+.++++.+.. | ..+++++.+|..|....+....+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 77777778865533 567789999999999999876532 3 5689999999999877766667999999999999
Q ss_pred hCCCcEEEEcCCCCcchhhHHHHHHHHHH-------HHHHHHhhcCCCC
Q 031912 106 RQRGGVLVHCFAGRSRRCHLFPHLGYFSM-------IILVYSNDNRPSE 147 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~~~~aylm~-------~a~~~v~~~Rp~i 147 (150)
..|+.|+|||++|.+||+|++ .+|||+ .|+++++++||.|
T Consensus 107 sLGktvYVHCKAGRtRSaTvV--~cYLmq~~~wtpe~A~~~vr~iRp~V 153 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVV--ACYLMQHKNWTPEAAVEHVRKIRPRV 153 (183)
T ss_pred ccCCeEEEEecCCCccchhhh--hhhhhhhcCCCHHHHHHHHHhcCcce
Confidence 999999999999999999999 899994 5999999999976
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.83 E-value=6.9e-20 Score=130.44 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=86.5
Q ss_pred CeeccCCeEEcChhhcC----CHHHHHhCCCceEEEcCCCCCCC--C-CCCceEEEEeeecCCCCCHHHHHHHHHHHHHH
Q 031912 31 PFEIEQGLFLGSIGAAS----NKDALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDE 103 (150)
Q Consensus 31 p~~I~~~LylG~~~~~~----~~~~l~~~gI~~Vvnl~~~~~~~--~-~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~ 103 (150)
-+-+...+..-..+... ..+.|++.||++|||++.+..+. + ..++.++++|+.|...+... .+.+.++++++
T Consensus 11 ~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~-~i~~~~~~i~~ 89 (166)
T PTZ00242 11 IEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKA-VIDNWLRLLDQ 89 (166)
T ss_pred eeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHH-HHHHHHHHHHH
Confidence 34455555554444332 34778999999999998754332 2 46899999999887655443 47777888887
Q ss_pred HHhC----CCcEEEEcCCCCcchhhHHHHHHHHH-------HHHHHHHhhcCCC
Q 031912 104 AKRQ----RGGVLVHCFAGRSRRCHLFPHLGYFS-------MIILVYSNDNRPS 146 (150)
Q Consensus 104 ~~~~----~~~VLVHC~~G~sRS~~v~~~~aylm-------~~a~~~v~~~Rp~ 146 (150)
.+.. |++|+|||.+|+||||+++ ++||| .+|+++++++||.
T Consensus 90 ~~~~~~~~g~~V~VHC~aGigRSgt~~--a~yL~~~~~~s~~eAi~~vr~~R~~ 141 (166)
T PTZ00242 90 EFAKQSTPPETIAVHCVAGLGRAPILV--ALALVEYGGMEPLDAVGFVREKRKG 141 (166)
T ss_pred HHHhhccCCCeEEEECCCCCCHHHHHH--HHHHHHhCCCCHHHHHHHHHHHCCC
Confidence 7654 9999999999999999999 88998 4699999999995
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=7.2e-20 Score=135.46 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=83.3
Q ss_pred CHHHHHhCCCceEEEcCCCCCCC--C-CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhh
Q 031912 48 NKDALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 48 ~~~~l~~~gI~~Vvnl~~~~~~~--~-~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~ 124 (150)
..+.|++.||++||++++..++. + ..++.++++|+.|...++.. .+++.+++++..+..|++|+|||.+|+||||+
T Consensus 108 yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~-~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGt 186 (241)
T PTZ00393 108 YIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVD-IVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPV 186 (241)
T ss_pred HHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHH-HHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34778999999999998765533 2 67899999999998776654 48888999999999999999999999999999
Q ss_pred HHHHHHHHH------HHHHHHHhhcCCCC
Q 031912 125 LFPHLGYFS------MIILVYSNDNRPSE 147 (150)
Q Consensus 125 v~~~~aylm------~~a~~~v~~~Rp~i 147 (150)
++ .+||| .+|+++||++||.+
T Consensus 187 l~--AayLI~~GmspeeAI~~VR~~RPgA 213 (241)
T PTZ00393 187 LA--SIVLIEFGMDPIDAIVFIRDRRKGA 213 (241)
T ss_pred HH--HHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 99 78998 57999999999953
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-16 Score=113.07 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=64.4
Q ss_pred CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHH--------HHHHHHHhhc
Q 031912 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFS--------MIILVYSNDN 143 (150)
Q Consensus 72 ~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm--------~~a~~~v~~~ 143 (150)
+.+..++++|+.|...+++. .+.++++||..+.++|++|+|||.+|+|||||++ .||+| +++..+++.+
T Consensus 70 ~~~~~~~~~~~~D~~~p~~~-~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtvi--aA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDLE-DLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVI--AAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred cCCceeeeeeecCCCCCcHH-HHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHH--HHHHHHHcCCCCHHHHHHHHHhc
Confidence 67889999999999999884 5999999999999999999999999999999999 88999 3577778888
Q ss_pred CC
Q 031912 144 RP 145 (150)
Q Consensus 144 Rp 145 (150)
||
T Consensus 147 r~ 148 (180)
T COG2453 147 RP 148 (180)
T ss_pred CC
Confidence 87
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.61 E-value=1e-14 Score=105.35 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=79.5
Q ss_pred HHHHhCCCceEEEcCCCCCCC--C-CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 50 DALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 50 ~~l~~~gI~~Vvnl~~~~~~~--~-~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..++.++++.++.+....++. | ..|+.++.+++.|...+++.. +.+.++..+.+.+ |++|.|||.+|.|||++++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 446678999999999877544 4 778999999999998888776 7778888888887 9999999999999999999
Q ss_pred HHHHHHHH-------HHHHHHhhcCC
Q 031912 127 PHLGYFSM-------IILVYSNDNRP 145 (150)
Q Consensus 127 ~~~aylm~-------~a~~~v~~~Rp 145 (150)
.+|+|. +|+..+|..||
T Consensus 166 --Ac~lmy~~g~ta~eaI~~lR~~Rp 189 (225)
T KOG1720|consen 166 --ACYLMYEYGMTAGEAIAWLRICRP 189 (225)
T ss_pred --HHHHHHHhCCCHHHHHHHHHhcCC
Confidence 789993 69999999999
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.49 E-value=5.7e-14 Score=98.84 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=60.2
Q ss_pred CeEEcChhh----------cCCHHHHHhCCCceEEEcCCCCC------CCC-----CCCceEEEEeeecCCCCCHHHHHH
Q 031912 37 GLFLGSIGA----------ASNKDALKSRNITHILTVANALA------PAH-----PNDFVYKVIGVADKEDTNLSQYFD 95 (150)
Q Consensus 37 ~LylG~~~~----------~~~~~~l~~~gI~~Vvnl~~~~~------~~~-----~~~~~~~~ip~~D~~~~~l~~~~~ 95 (150)
.|.+...+- ..|.+.|++.|++.||.+++..+ +.+ ..++.++++|+.|...+++.. +.
T Consensus 42 ~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~~ 120 (168)
T PF05706_consen 42 FLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-AW 120 (168)
T ss_dssp EEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-HH
T ss_pred eeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-HH
Confidence 466666554 23567899999999999987653 111 578999999999998888765 45
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 96 ECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 96 ~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
++.+.|...+++|++|+|||..|.|||++++ .++|+
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvA--AcLLl 156 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVA--ACLLL 156 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHH--HHHHH
Confidence 6788889999999999999999999999999 45554
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.45 E-value=8.9e-14 Score=98.79 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=60.6
Q ss_pred CeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC----C--CCCceEEEEeeecCCCC---CHHHHHHHHHHHH
Q 031912 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--PNDFVYKVIGVADKEDT---NLSQYFDECISFI 101 (150)
Q Consensus 31 p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~----~--~~~~~~~~ip~~D~~~~---~l~~~~~~~~~fI 101 (150)
-..|.++||.|+++...+..+|+++|+++|||++.+.... | ..++.+.++++...... -..+.+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999875432 2 67899999998755431 1233466666655
Q ss_pred HHHHhCCCcEEEEcCCCCcchhhHHHH
Q 031912 102 DEAKRQRGGVLVHCFAGRSRRCHLFPH 128 (150)
Q Consensus 102 ~~~~~~~~~VLVHC~~G~sRS~~v~~~ 128 (150)
.+. .+.+|||||..|..||++++++
T Consensus 87 ld~--~n~PvLiHC~~G~~rTG~vvg~ 111 (164)
T PF03162_consen 87 LDP--RNYPVLIHCNHGKDRTGLVVGC 111 (164)
T ss_dssp H-G--GG-SEEEE-SSSSSHHHHHHHH
T ss_pred hCC--CCCCEEEEeCCCCcchhhHHHH
Confidence 443 4579999999999999999965
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.44 E-value=3.2e-12 Score=88.14 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=66.7
Q ss_pred eeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC----C--------CCCceEEEEeeecCCCCCHHHHHHHHHH
Q 031912 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--------PNDFVYKVIGVADKEDTNLSQYFDECIS 99 (150)
Q Consensus 32 ~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~----~--------~~~~~~~~ip~~D~~~~~l~~~~~~~~~ 99 (150)
.+|.+++|+++..+..+.+.|.++||+.|||+..+.+.. . ..++.|+++|+..... +.. ......+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~~-~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TPD-DVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CHH-HHHHHHH
Confidence 589999999999999999999999999999998654321 1 2588999999875321 111 1333333
Q ss_pred HHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 100 FIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 100 fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
+++ ...++||+||.+|. ||+++.+
T Consensus 81 ~~~---~~~~pvL~HC~sG~-Rt~~l~a 104 (135)
T TIGR01244 81 AIG---AAEGPVLAYCRSGT-RSSLLWG 104 (135)
T ss_pred HHH---hCCCCEEEEcCCCh-HHHHHHH
Confidence 333 34689999999999 9988773
No 16
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.42 E-value=6.6e-13 Score=88.32 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=55.2
Q ss_pred eeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC------------CCCCceEEEEeeecCCCCCHHHHHHHHHH
Q 031912 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------------HPNDFVYKVIGVADKEDTNLSQYFDECIS 99 (150)
Q Consensus 32 ~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~------------~~~~~~~~~ip~~D~~~~~l~~~~~~~~~ 99 (150)
.+|.+.+|++++.+..+.+.+.+.|+++|||+..+.+.. ...|+.|.++|+.... +. .+.+..
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~~ 77 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVEA 77 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHHH
Confidence 578999999999999999999999999999998764321 1468999999998532 21 233344
Q ss_pred HHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 100 FIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 100 fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
|....-...++||+||..|. ||+++.
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~ 103 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALW 103 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHH
Confidence 43333335789999999995 887665
No 17
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.38 E-value=7.9e-12 Score=84.68 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=67.6
Q ss_pred HHHHHhCCCceEEEcCCCCCCCC---CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHH-H-hCCCcEEEEcCCCCcchh
Q 031912 49 KDALKSRNITHILTVANALAPAH---PNDFVYKVIGVADKEDTNLSQYFDECISFIDEA-K-RQRGGVLVHCFAGRSRRC 123 (150)
Q Consensus 49 ~~~l~~~gI~~Vvnl~~~~~~~~---~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~-~-~~~~~VLVHC~~G~sRS~ 123 (150)
.+.|+++|+++||.+|+..+... .+|+..+.+|++|...+. .+..++=.+..... . .-|..|-|||.+|+||++
T Consensus 34 ieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrap 112 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAP 112 (173)
T ss_pred HHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcch
Confidence 37799999999999998776542 688999999998865432 12122222222222 2 247899999999999999
Q ss_pred hHHHHHHHHH-----HHHHHHHhhcCC
Q 031912 124 HLFPHLGYFS-----MIILVYSNDNRP 145 (150)
Q Consensus 124 ~v~~~~aylm-----~~a~~~v~~~Rp 145 (150)
++++ +|.+- .+|.+++|++|-
T Consensus 113 vlva-lalie~gmkyedave~ir~krr 138 (173)
T KOG2836|consen 113 VLVA-LALIEAGMKYEDAVEMIRQKRR 138 (173)
T ss_pred HHHH-HHHHHccccHHHHHHHHHHHhh
Confidence 9996 33321 579999999875
No 18
>PLN02727 NAD kinase
Probab=99.17 E-value=2.4e-10 Score=97.89 Aligned_cols=92 Identities=11% Similarity=0.171 Sum_probs=72.0
Q ss_pred CeEEcChhhcCCHHHHHhCCCceEEEcCCCCCC-CC----------CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHH
Q 031912 37 GLFLGSIGAASNKDALKSRNITHILTVANALAP-AH----------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (150)
Q Consensus 37 ~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~-~~----------~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~ 105 (150)
.+|.|++++..+.+.+.+.|+++|||+..+.+. .+ ..++.|+++|+.+.......+ ++++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~Eq-Ve~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQ-VEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHh--
Confidence 479999999888999999999999999877652 21 258999999997765554443 6666666633
Q ss_pred hCCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
...++||+||+.|..|+++++ .+|+.
T Consensus 339 slpkPVLvHCKSGarRAGamv--A~yl~ 364 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMV--SRWKQ 364 (986)
T ss_pred hcCCCEEEECCCCCchHHHHH--HHHHH
Confidence 357899999999999999999 56665
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.15 E-value=2.5e-10 Score=74.24 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=47.2
Q ss_pred EEEEeeecCCCCCHHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCcchhhHHHHHHHHHH-------------HHHHHH
Q 031912 77 YKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRRCHLFPHLGYFSM-------------IILVYS 140 (150)
Q Consensus 77 ~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~---~~~~VLVHC~~G~sRS~~v~~~~aylm~-------------~a~~~v 140 (150)
|+..++.|...++....|.+.++.+..... .+++|+|||.+|+|||++++ .+|++. +++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV--ALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH--HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 334444454444444556666666666554 36799999999999999999 566552 467889
Q ss_pred hhcCCC
Q 031912 141 NDNRPS 146 (150)
Q Consensus 141 ~~~Rp~ 146 (150)
|..||.
T Consensus 83 r~~r~~ 88 (105)
T smart00012 83 RKQRPG 88 (105)
T ss_pred Hhhhhh
Confidence 999885
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.15 E-value=2.5e-10 Score=74.24 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=47.2
Q ss_pred EEEEeeecCCCCCHHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCcchhhHHHHHHHHHH-------------HHHHHH
Q 031912 77 YKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRRCHLFPHLGYFSM-------------IILVYS 140 (150)
Q Consensus 77 ~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~---~~~~VLVHC~~G~sRS~~v~~~~aylm~-------------~a~~~v 140 (150)
|+..++.|...++....|.+.++.+..... .+++|+|||.+|+|||++++ .+|++. +++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV--ALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH--HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 334444454444444556666666666554 36799999999999999999 566552 467889
Q ss_pred hhcCCC
Q 031912 141 NDNRPS 146 (150)
Q Consensus 141 ~~~Rp~ 146 (150)
|..||.
T Consensus 83 r~~r~~ 88 (105)
T smart00404 83 RKQRPG 88 (105)
T ss_pred Hhhhhh
Confidence 999885
No 21
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.94 E-value=7.9e-09 Score=76.31 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=77.2
Q ss_pred eeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC----C--CCCceEEEEeeecCC------CCCHH-HHHHHHH
Q 031912 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--PNDFVYKVIGVADKE------DTNLS-QYFDECI 98 (150)
Q Consensus 32 ~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~----~--~~~~~~~~ip~~D~~------~~~l~-~~~~~~~ 98 (150)
+-|.++||-|+++...+..+|+.++.+.|+.++.+..+. | ..++++.++.+.... ..++. ..+..++
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l 140 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKAL 140 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHH
Confidence 457779999999999999999999999999999987554 2 678899999987433 33433 3377777
Q ss_pred HHHHHHHhCCCcEEEEcCCCCcchhhHHHHHH
Q 031912 99 SFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLG 130 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~a 130 (150)
+++-. ..+.++||||..|..|+++++.++-
T Consensus 141 ~~lld--~~N~P~Lihc~rGkhRtg~lVgclR 170 (249)
T KOG1572|consen 141 KVLLD--KRNYPILIHCKRGKHRTGCLVGCLR 170 (249)
T ss_pred HHHhc--ccCCceEEecCCCCcchhhhHHHHH
Confidence 76333 4578999999999999999998633
No 22
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.91 E-value=5.8e-09 Score=74.01 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=49.1
Q ss_pred eccCC-eEEcChhhcC---CHHHHHhCCCceEEEcCCCCC-----CCCCCCceEEEEeeecCCCCC---HH---------
Q 031912 33 EIEQG-LFLGSIGAAS---NKDALKSRNITHILTVANALA-----PAHPNDFVYKVIGVADKEDTN---LS--------- 91 (150)
Q Consensus 33 ~I~~~-LylG~~~~~~---~~~~l~~~gI~~Vvnl~~~~~-----~~~~~~~~~~~ip~~D~~~~~---l~--------- 91 (150)
.|-++ ||-++..... +.+.|.++||++||++..+.+ .....++.+.++|+.+..... +.
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 57777 8998766533 456788999999999986643 234678999999988554431 11
Q ss_pred -HHHH-----------HHH-HHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 92 -QYFD-----------ECI-SFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 92 -~~~~-----------~~~-~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
..+. +++ +++.......++||+||.+|..||+.+++
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~a 143 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAA 143 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHH
Confidence 0011 111 12222333457999999999999999885
No 23
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.87 E-value=1e-08 Score=76.33 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEcCCCCcchhhHHHHHHHHH------------HHHHHHHhhcCCC
Q 031912 93 YFDECISFIDEAKR--QRGGVLVHCFAGRSRRCHLFPHLGYFS------------MIILVYSNDNRPS 146 (150)
Q Consensus 93 ~~~~~~~fI~~~~~--~~~~VLVHC~~G~sRS~~v~~~~aylm------------~~a~~~v~~~Rp~ 146 (150)
.|.+.++.+..... .+++|+|||.+|+|||++++ +++++ .+++..+|+.||.
T Consensus 149 ~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~--a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~ 214 (231)
T cd00047 149 SLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFI--AIDILLQRLEAEGVVDIFQTVKELRSQRPG 214 (231)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHH--HHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 35555555554442 36799999999999999999 44443 2589999999994
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=1.4e-08 Score=67.62 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=63.2
Q ss_pred eeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCCCC----C--------CCCceEEEEeeecCC-CCCHHHHHHHHH
Q 031912 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--------PNDFVYKVIGVADKE-DTNLSQYFDECI 98 (150)
Q Consensus 32 ~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~----~--------~~~~~~~~ip~~D~~-~~~l~~~~~~~~ 98 (150)
.+|.+.|+++++.+..+...++.+|++.|||-.++.+.+ + ..++.|.++|+.... .++--+.|.+++
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al 83 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRAL 83 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999998776543 1 467899999997432 221112233332
Q ss_pred HHHHHHHhCCCcEEEEcCCCCcchhh
Q 031912 99 SFIDEAKRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~~G~sRS~~ 124 (150)
+ +.+++||.||+.| .||-+
T Consensus 84 ~------eaegPVlayCrsG-tRs~~ 102 (130)
T COG3453 84 D------EAEGPVLAYCRSG-TRSLN 102 (130)
T ss_pred H------HhCCCEEeeecCC-chHHH
Confidence 2 3568999999999 66644
No 25
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.82 E-value=1.5e-08 Score=76.64 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEcCCCCcchhhHHHHHHHHH------------HHHHHHHhhcCCC
Q 031912 94 FDECISFIDEAKRQ-RGGVLVHCFAGRSRRCHLFPHLGYFS------------MIILVYSNDNRPS 146 (150)
Q Consensus 94 ~~~~~~fI~~~~~~-~~~VLVHC~~G~sRS~~v~~~~aylm------------~~a~~~v~~~Rp~ 146 (150)
+.+.++.+...... +++|+|||.+|+||||++++ ++++ .+++..+|..||.
T Consensus 178 ~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a--~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 178 ILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIA--IDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 44444444444332 67999999999999999994 4443 2589999999995
No 26
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.65 E-value=3.3e-07 Score=63.58 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHhCCCceEEEcCCCCCCC-CCCCc---eEEEEeeecCCCC------CHHHHHHHHHHHHHHHHhCCCcEEEEcCCC
Q 031912 49 KDALKSRNITHILTVANALAPA-HPNDF---VYKVIGVADKEDT------NLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (150)
Q Consensus 49 ~~~l~~~gI~~Vvnl~~~~~~~-~~~~~---~~~~ip~~D~~~~------~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G 118 (150)
.+.-.+.|-+++|++....... .+..+ .++.+-+.|...+ .-..+...+++|+++.-. ..+.||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~-~apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPR-FAPLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCcc-ccceeeeeccc
Confidence 3455578899999998753321 12222 3455555554322 234668899999887654 45899999999
Q ss_pred CcchhhHHHHHHHHH------HHHHHHHhhcCCCC
Q 031912 119 RSRRCHLFPHLGYFS------MIILVYSNDNRPSE 147 (150)
Q Consensus 119 ~sRS~~v~~~~aylm------~~a~~~v~~~Rp~i 147 (150)
+|||.+++...+..+ .+..+.++..+|..
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~a 138 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYA 138 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCccc
Confidence 999998884222223 35788888888865
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.65 E-value=1.2e-07 Score=73.62 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCCcchhhHHHHHHHHH-----------HHHHHHHhhcCCC
Q 031912 108 RGGVLVHCFAGRSRRCHLFPHLGYFS-----------MIILVYSNDNRPS 146 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS~~v~~~~aylm-----------~~a~~~v~~~Rp~ 146 (150)
.++++|||.+|+||||++++ +..++ .+....+|+.||.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~a-id~~i~~~~~~~~v~v~~~V~~lR~qR~~ 277 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCA-IDICISKYNERAIIPLLSIVRDLRKQRHN 277 (303)
T ss_pred CCCeEEECCCCCchhHHHHH-HHHHHHHHHhcCCCCHHHHHHHHHhhccc
Confidence 36999999999999999997 34444 2478888888883
No 28
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.61 E-value=2.1e-07 Score=72.12 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCCcchhhHHHHHHHHH-----------HHHHHHHhhcCCC
Q 031912 108 RGGVLVHCFAGRSRRCHLFPHLGYFS-----------MIILVYSNDNRPS 146 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS~~v~~~~aylm-----------~~a~~~v~~~Rp~ 146 (150)
.++++|||.+|+||||++++. -..+ ......+|+.||.
T Consensus 221 ~~PIVVHCSaGvGRTGtFcai-Di~l~~~~~~~~vdi~~~V~~lR~qR~~ 269 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVF-DICATEFDKTGMLSIANALKKVRQKKYG 269 (298)
T ss_pred CCCEEEECCCCCchhHHHHHH-HHHHHHHHhcCcccHHHHHHHHHhhCcc
Confidence 369999999999999999973 3333 1378888888883
No 29
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.58 E-value=1.5e-07 Score=65.91 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=42.3
Q ss_pred CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 72 ~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
..++.|.++|+.|...+... .|++.++|+... .++.-+.+||.+|.|||.+.. +.|.|
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~-~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~M--v~~~l 147 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPE-DIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFM--VMYDL 147 (149)
T ss_dssp HTT-EEEEEEE-TTS---HH-HHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHH--HHHHH
T ss_pred cCCceEEEEeCCCcCCCCHH-HHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHH--HHHHH
Confidence 56889999999998766554 499999999888 678899999999999999888 55544
No 30
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.57 E-value=2.3e-07 Score=72.71 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=29.7
Q ss_pred CcEEEEcCCCCcchhhHHHHHHHHH-----------HHHHHHHhhcCCC
Q 031912 109 GGVLVHCFAGRSRRCHLFPHLGYFS-----------MIILVYSNDNRPS 146 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~~~~aylm-----------~~a~~~v~~~Rp~ 146 (150)
++++|||.+|+||||++++ +-+++ .+++..+|..||.
T Consensus 248 ~PIvVHCsaGvGRTGtfca-id~~l~~l~~~~~vdv~~~V~~lR~qR~~ 295 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCA-IDNALEQLEKEKEVCLGEIVLKIRKQRHS 295 (323)
T ss_pred CCEEEEcCCCCCcchhHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 6999999999999999996 34443 2478888888884
No 31
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.54 E-value=7.3e-07 Score=72.45 Aligned_cols=98 Identities=14% Similarity=0.275 Sum_probs=74.6
Q ss_pred ccCCeEEcChhhcCCH----HHHHhCCCceEEEcCCCCCC--CCCCCceEEEEeeecCC--CCCHHHHHHHHHHHHHHHH
Q 031912 34 IEQGLFLGSIGAASNK----DALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKE--DTNLSQYFDECISFIDEAK 105 (150)
Q Consensus 34 I~~~LylG~~~~~~~~----~~l~~~gI~~Vvnl~~~~~~--~~~~~~~~~~ip~~D~~--~~~l~~~~~~~~~fI~~~~ 105 (150)
++.+||+|........ ..-....+..||+|.+.... .......++++++.... ..++...+++++.|+...+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4668999987752211 11224578899999977643 34677889999987543 3468888999999999999
Q ss_pred hC--CCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 106 RQ--RGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 106 ~~--~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
.+ ++++||+|..|...|+.++ ++.|.
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVa--LaILc 399 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVA--LAILC 399 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHH--HHHHH
Confidence 88 8999999999999999999 44444
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.50 E-value=3.1e-07 Score=71.66 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=29.7
Q ss_pred CcEEEEcCCCCcchhhHHHHHHHHH-----------HHHHHHHhhcCCC
Q 031912 109 GGVLVHCFAGRSRRCHLFPHLGYFS-----------MIILVYSNDNRPS 146 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~~~~aylm-----------~~a~~~v~~~Rp~ 146 (150)
++++|||.+|+||||++++ +...+ .++...+|..||.
T Consensus 230 ~PIvVHCsaGvGRtGtfca-idi~i~~l~~~~~v~v~~~V~~lR~qR~~ 277 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCA-VDICLNQLVKRKAICLAKTAEKIREQRHA 277 (312)
T ss_pred CCEEEEecCCCcchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 6999999999999999996 33333 2478888888884
No 33
>PHA02738 hypothetical protein; Provisional
Probab=98.45 E-value=5.7e-07 Score=70.38 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCcchhhHHHHHHHHHH-----------HHHHHHhhcCCC
Q 031912 108 RGGVLVHCFAGRSRRCHLFPHLGYFSM-----------IILVYSNDNRPS 146 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS~~v~~~~aylm~-----------~a~~~v~~~Rp~ 146 (150)
.++++|||.+|+||||++++ +..++. +....+|..||.
T Consensus 227 ~~PIVVHCs~GiGRtGtFca-idi~i~~~~~~~~vdv~~~V~~lR~qR~~ 275 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCV-VDISISRFDACATVSIPSIVSSIRNQRYY 275 (320)
T ss_pred CCCeEEEcCCCCChhhhhhH-HHHHHHHHHhcCCcCHHHHHHHHHhhhhh
Confidence 36899999999999999997 444442 368888888884
No 34
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.43 E-value=4.3e-07 Score=67.10 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHh----CCCcEEEEcCCCCcchhhHHHHHHHHH------------HHHHHHHhhcCCC
Q 031912 94 FDECISFIDEAKR----QRGGVLVHCFAGRSRRCHLFPHLGYFS------------MIILVYSNDNRPS 146 (150)
Q Consensus 94 ~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS~~v~~~~aylm------------~~a~~~v~~~Rp~ 146 (150)
....++|+..... .+++++|||.+|.|||+++++ +.++ .+++..+|+.||.
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~--~~~~~~~~~~~~~~~v~~~~~~lR~~R~~ 218 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCA--IDILIEQLKKEGEVDVFEIVKKLRQQRPG 218 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHH--HHHHHHHHHHHSEECHHHHHHHHHTTSTT
T ss_pred cchhhhhhhhccccccCCccceEeeccccccccccccc--chhhccccccccchhhHHHHHHHHhhCCC
Confidence 3444455554443 348999999999999999995 4433 2478899999984
No 35
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.41 E-value=8.8e-07 Score=76.90 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEeeecCCCC---CHHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCcchhhHHHH--HHHHHH--------HHHHHHhhcC
Q 031912 79 VIGVADKEDT---NLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRRCHLFPH--LGYFSM--------IILVYSNDNR 144 (150)
Q Consensus 79 ~ip~~D~~~~---~l~~~~~~~~~fI~~~~~~-~~~VLVHC~~G~sRS~~v~~~--~aylm~--------~a~~~v~~~R 144 (150)
++...|+|+. +-.++|.+.++.|...+.. +.+|+|||.+|+||||++++. +.|++. +.++.+|++|
T Consensus 1030 hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1030 HLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred eeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3333444443 3445577777777777766 679999999999999999965 445552 4677777777
Q ss_pred C
Q 031912 145 P 145 (150)
Q Consensus 145 p 145 (150)
.
T Consensus 1110 ~ 1110 (1144)
T KOG0792|consen 1110 A 1110 (1144)
T ss_pred h
Confidence 5
No 36
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.39 E-value=7.1e-07 Score=72.17 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=63.3
Q ss_pred CCceEEEcCCCC-CCCCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCcchhhHHHHHHHH
Q 031912 56 NITHILTVANAL-APAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ--RGGVLVHCFAGRSRRCHLFPHLGYF 132 (150)
Q Consensus 56 gI~~Vvnl~~~~-~~~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~--~~~VLVHC~~G~sRS~~v~~~~ayl 132 (150)
|--.|.|++.+. ...-.-.-....+++.|...+.+.. +..+++-++..+.+ ..-|.|||++|.+||++++ +|||
T Consensus 53 ~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~i--cA~L 129 (434)
T KOG2283|consen 53 DHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMI--CAYL 129 (434)
T ss_pred CceEEEecCccccCCccccccceeecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEE--eHHH
Confidence 334577998532 2111112245568888888887766 88888888888875 3678999999999999999 8898
Q ss_pred H--------HHHHHHHhhcC
Q 031912 133 S--------MIILVYSNDNR 144 (150)
Q Consensus 133 m--------~~a~~~v~~~R 144 (150)
+ .+|+.+...+|
T Consensus 130 ~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 130 IYSGISATAEEALDYFNEKR 149 (434)
T ss_pred HhhhhcCCHHHHHHHHhhhh
Confidence 8 35888888888
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.29 E-value=1.3e-06 Score=65.82 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCCeeccCCeEEcChhhcCCHHHHHhCCCceEEEcCCCC-C--CCCCCCceEEEEe-eecCCCCCHHHHHHHHHHHHHHH
Q 031912 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANAL-A--PAHPNDFVYKVIG-VADKEDTNLSQYFDECISFIDEA 104 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~-~--~~~~~~~~~~~ip-~~D~~~~~l~~~~~~~~~fI~~~ 104 (150)
.+|..+.+.+-+|......-...+ -...++++..-. . ...+..+.+.+++ +.|...+++. +..++++..
T Consensus 139 YWp~~~~~~~~~G~~v~~~~~~e~---~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p~i~----sl~~~~~sl 211 (302)
T COG5599 139 YWPLGYDDTLIIGLRVIKQKKYEL---FNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPDIR----SLTEVIHSL 211 (302)
T ss_pred hCCCCcCcceeeeeEEEEEecccc---cccceeeeeecccccCCCCccEEEEEEecCccccCCcCHH----HHHHHHHHh
Confidence 356667777666743222211122 223344432211 1 1112333333333 4466555444 455555555
Q ss_pred Hh---CCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 105 KR---QRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 105 ~~---~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
-. .+++++|||.||+||+||+++ +-.++
T Consensus 212 ~~sp~~t~piiVHCSAGvGRTGTFIa-lD~ll 242 (302)
T COG5599 212 NDSPVRTGPIIVHCSAGVGRTGTFIA-LDILL 242 (302)
T ss_pred hcCcCCCCCEEEEeccCCCCcceeee-HHHHH
Confidence 42 568999999999999999996 34444
No 38
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.24 E-value=4.6e-06 Score=68.13 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.4
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHH--------HHHHHHhhcCCC
Q 031912 111 VLVHCFAGRSRRCHLFPHLGYFSM--------IILVYSNDNRPS 146 (150)
Q Consensus 111 VLVHC~~G~sRS~~v~~~~aylm~--------~a~~~v~~~Rp~ 146 (150)
.+|||.+|+||||+++ .+++|. +...-+|..|+.
T Consensus 469 PVVHCSAGVGRTGTFI--Ai~llk~~~~~sle~IV~dlR~qRng 510 (535)
T PRK15375 469 PMIHCLGGVGRTGTMA--AALVLKDNPHSNLEQVRADFRNSRNN 510 (535)
T ss_pred ceEEcCCCCchHHHHH--HHHHHhccccCCHHHHHHHHHhcCCc
Confidence 4799999999999999 556663 366667777764
No 39
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.02 E-value=8.5e-06 Score=65.40 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred HHHHHhCCCceEEEcCCCCCCCC----------------CCCceEEEEeeecC--CCCC--HHHHHHHHHHHHHHHHhCC
Q 031912 49 KDALKSRNITHILTVANALAPAH----------------PNDFVYKVIGVADK--EDTN--LSQYFDECISFIDEAKRQR 108 (150)
Q Consensus 49 ~~~l~~~gI~~Vvnl~~~~~~~~----------------~~~~~~~~ip~~D~--~~~~--l~~~~~~~~~fI~~~~~~~ 108 (150)
...++.+|+-.|-|+.+.....| ..-.+|+.+-+.|. |.++ ....++++..- +..+..-
T Consensus 373 e~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~A 451 (600)
T KOG0790|consen 373 EGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMDA 451 (600)
T ss_pred ccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhh-hcccccc
Confidence 34567788888888876443221 01123333334443 3332 33323333322 3333345
Q ss_pred CcEEEEcCCCCcchhhHHHHHHHHHH--------------HHHHHHhhcCCC
Q 031912 109 GGVLVHCFAGRSRRCHLFPHLGYFSM--------------IILVYSNDNRPS 146 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~~~~aylm~--------------~a~~~v~~~Rp~ 146 (150)
++|.|||.+|+||++|++. |-.||. +.+++||+.|..
T Consensus 452 gpIvVHCSAGIGrTGTfiV-iD~lld~I~~~Gldc~iDi~ktIqmVRsqRSG 502 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIV-IDMLLDQIREKGLDCDIDIQKTIQMVRSQRSG 502 (600)
T ss_pred CcEEEEccCCcCCcceEEE-hHHHHHHHHhcCCCCcccHHHHHHHHHHHhcc
Confidence 6999999999999999885 556662 378888888863
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.92 E-value=2.3e-05 Score=59.29 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcCCCCcchhhHHHH
Q 031912 94 FDECISFIDEAKRQR-GGVLVHCFAGRSRRCHLFPH 128 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~-~~VLVHC~~G~sRS~~v~~~ 128 (150)
.+....++...+..+ ++||+||.+|..|+|.++++
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al 156 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAAL 156 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHH
Confidence 344444555555554 89999999999999999964
No 41
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.71 E-value=0.0001 Score=59.19 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCcchhhHHHHHHHHH------------HHHHHHHhhcCC
Q 031912 107 QRGGVLVHCFAGRSRRCHLFPHLGYFS------------MIILVYSNDNRP 145 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~~~~aylm------------~~a~~~v~~~Rp 145 (150)
+.+++.|||.+|+||++|+++. .+.+ .+..+.+|..|+
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~-~~~~~~~~~~~~~~~~~~~~~~iR~qR~ 347 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLI-EHALIELQGPEGEPPIDEILREIRYQRP 347 (415)
T ss_pred CCCCeEEECCCCCCccchHHHH-HHHHHHHhcCCCCccHHHHHHHHHHHhh
Confidence 4579999999999999999963 3333 234556777776
No 42
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.57 E-value=0.00045 Score=58.49 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCCCcchhhHHHHHHHHHH------------HHHHHHhhcCCCC
Q 031912 107 QRGGVLVHCFAGRSRRCHLFPHLGYFSM------------IILVYSNDNRPSE 147 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~~~~aylm~------------~a~~~v~~~Rp~i 147 (150)
...+|+|||..|-|||++-++ +-.++. ..++++|++||..
T Consensus 926 RScpIiVH~sdGaGRTG~Yil-iDmvl~Rm~kGakeIDIaATlEHlRDQR~Gm 977 (1004)
T KOG0793|consen 926 RSCPIIVHCSDGAGRTGTYIL-IDMVLNRMAKGAKEIDIAATLEHLRDQRPGM 977 (1004)
T ss_pred CCCceEEEccCCCCccceeee-HHHHHHHHhccchhhhHHHHHHHHhhcCCcc
Confidence 357999999999999999885 333331 1589999999953
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.00053 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCcchhhHHHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLFPH 128 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~~~ 128 (150)
.+++++|||.+|++||+|+++.
T Consensus 286 ~~~p~iVhCSAGVgRTGTFial 307 (374)
T KOG0791|consen 286 SKGPTIVHCSAGVGRTGTFIAL 307 (374)
T ss_pred CCCceeEEeecccccccchHhH
Confidence 4689999999999999999973
No 44
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.22 E-value=0.00089 Score=53.53 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=66.9
Q ss_pred HHHHHhC--CCceEEEcCCCCC----CC-CCCCceEEEEeeec---CCCCCHHHHHHHHHH-HHHHHHhCCCcEEEEcCC
Q 031912 49 KDALKSR--NITHILTVANALA----PA-HPNDFVYKVIGVAD---KEDTNLSQYFDECIS-FIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 49 ~~~l~~~--gI~~Vvnl~~~~~----~~-~~~~~~~~~ip~~D---~~~~~l~~~~~~~~~-fI~~~~~~~~~VLVHC~~ 117 (150)
...|+.+ .+.-+++++...- +. ...++.|+.+.... .+.......|..+++ |.......++=|+|||.+
T Consensus 54 ~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcth 133 (393)
T KOG2386|consen 54 FELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTH 133 (393)
T ss_pred HHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence 4445544 4667788875431 11 25677777776542 233334444555554 777777789999999999
Q ss_pred CCcchhhHHHHHHHHH-------HHHHHHHhhcCCCC
Q 031912 118 GRSRRCHLFPHLGYFS-------MIILVYSNDNRPSE 147 (150)
Q Consensus 118 G~sRS~~v~~~~aylm-------~~a~~~v~~~Rp~i 147 (150)
|.+|++=++ ++||+ .+|.....+.||..
T Consensus 134 G~NrtgyLI--~~yL~~~~~~s~~~aik~f~~~r~~g 168 (393)
T KOG2386|consen 134 GLNRTGYLI--CAYLADVGGYSSSEAIKRFADARPPG 168 (393)
T ss_pred cccccceee--eeeeeeccCccHHHHHHHHHHhCCCc
Confidence 999999999 88988 45888888888854
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.90 E-value=0.0012 Score=58.42 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=32.0
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHhC----CCcEEEEcCCCCcchhhHHH
Q 031912 82 VADKEDTNLSQYFDECISFIDEAKRQ----RGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 82 ~~D~~~~~l~~~~~~~~~fI~~~~~~----~~~VLVHC~~G~sRS~~v~~ 127 (150)
+..+++.....+--..++|+.+...- .|+++|||.+|+||||++++
T Consensus 700 Ft~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~ 749 (1087)
T KOG4228|consen 700 FTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIV 749 (1087)
T ss_pred eccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEE
Confidence 33344444434444566777776653 38999999999999999875
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.47 E-value=0.0074 Score=53.58 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCCcchhhHHHHHHHHH--H---------HHHHHHhhcCCC
Q 031912 108 RGGVLVHCFAGRSRRCHLFPHLGYFS--M---------IILVYSNDNRPS 146 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS~~v~~~~aylm--~---------~a~~~v~~~Rp~ 146 (150)
.+++.|||.+|.+||+++++ ++-++ + .+.+.++..||.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~a-i~~l~e~~~~e~~vDVfq~vk~Lr~~rp~ 1066 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCA-ISILLERMRKEGVVDVFQTVKTLRFQRPG 1066 (1087)
T ss_pred CCCEEEEEcCCCcceeehHH-HHHHHHHHhhcCceeeehhhhhhhhcCcc
Confidence 57999999999999999997 34443 2 167777777775
No 47
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.0082 Score=50.20 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHHH
Q 031912 95 DECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFSM 134 (150)
Q Consensus 95 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm~ 134 (150)
..|+...++.-..+..|||||..|=.|++-+++ +|.||-
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~Qlvs-LA~LlL 399 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVS-LAMLLL 399 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHH-HHHHHh
Confidence 344444444455678999999999999999998 677773
No 48
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=95.28 E-value=0.055 Score=43.08 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=21.6
Q ss_pred hCCCcEEEEcCCCCcchhhHHHHHHHHHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLFPHLGYFSM 134 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~~~~aylm~ 134 (150)
.+|..|||||..|-.|++.+++ ++-+|.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s-L~ql~l 256 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS-LAQLLL 256 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH-HHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH-HHHHHH
Confidence 5789999999999999988876 566663
No 49
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=94.87 E-value=0.079 Score=44.44 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=28.2
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 96 ECISFIDEAKR-QRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 96 ~~~~fI~~~~~-~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
++..+|.+++. +|-.|||||..|..|+..|++ ++=+|
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S-LaQll 368 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS-LAQLL 368 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH-HHHHH
Confidence 34445666666 568999999999999988887 56555
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.89 E-value=0.13 Score=32.94 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=15.7
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.++++|+|+|..| .||...+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHH
Confidence 4678999999988 7776544
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=92.96 E-value=0.21 Score=32.06 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=37.9
Q ss_pred HHhCCCceEEEcCCCCCCCCCCCce-EEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 52 LKSRNITHILTVANALAPAHPNDFV-YKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 52 l~~~gI~~Vvnl~~~~~~~~~~~~~-~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+...+-..++++.+..+.....-.. ..++|+.+........ . ..++++++|+|..| .||...+
T Consensus 15 ~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~---------~--~~~~~~ivv~C~~G-~rS~~aa 78 (110)
T COG0607 15 LLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLL---------E--LPDDDPIVVYCASG-VRSAAAA 78 (110)
T ss_pred hhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhccc---------c--cCCCCeEEEEeCCC-CChHHHH
Confidence 3445667889998763322222233 6677776554321110 0 56789999999999 5665544
No 52
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=90.76 E-value=0.48 Score=34.64 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHH
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPH 128 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~ 128 (150)
+.+.+.++++.+.+.+.++++|++. |.|+|++++..
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~ 58 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQH 58 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHH
Confidence 3456888999999999999999987 88889888743
No 53
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=89.85 E-value=2.2 Score=30.49 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.+.+.++.+.|-+.+.+|++||++ |.|+|++=+
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaadA 56 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAADA 56 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchhhH
Confidence 4455778888888899999999986 777776655
No 54
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.47 E-value=2.1 Score=28.22 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.0
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
...+++|+++|..| .||...+
T Consensus 61 ~~~~~~ivv~C~~G-~rs~~aa 81 (117)
T cd01522 61 VGKDRPVLLLCRSG-NRSIAAA 81 (117)
T ss_pred CCCCCeEEEEcCCC-ccHHHHH
Confidence 35678999999998 5776554
No 55
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=86.57 E-value=3.9 Score=28.38 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=46.5
Q ss_pred eccCC-eEEcChhhcCCHHHHHhCCCceEEEcCCCCCCCCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhC---C
Q 031912 33 EIEQG-LFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ---R 108 (150)
Q Consensus 33 ~I~~~-LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~---~ 108 (150)
||.++ ||.+.... ..++..=++-.++.++. .|... ..|.+.-++.. +-+.+.-+++.+++ .
T Consensus 2 E~i~drLyf~~~~~-----~p~~~~~~~yF~iD~~l--------~Y~~F-~~DFGPlnL~~-lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 2 EIIPDRLYFASLRN-----KPKSTPNTHYFSIDDEL--------VYENF-YADFGPLNLAQ-LYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp --SSSSEEEEE-SS---------BTTEEEEE-TTTS------------S-SS------HHH-HHHHHHHHHHHHH-GGGT
T ss_pred CCCCCcEEEEEeCC-----CCCCCCCcEEEEeCCeE--------EEecc-cCcCCCccHHH-HHHHHHHHHHHHcCHHhc
Confidence 44444 88877654 12222334444444322 22222 46888888876 55666667777765 5
Q ss_pred CcEEEEcCCCCc--chhhHHHHHHHHH-------HHHHHHHhhcCC
Q 031912 109 GGVLVHCFAGRS--RRCHLFPHLGYFS-------MIILVYSNDNRP 145 (150)
Q Consensus 109 ~~VLVHC~~G~s--RS~~v~~~~aylm-------~~a~~~v~~~Rp 145 (150)
++.+|||...-. |+-+....-+|.| .+|++-+...-|
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 788888876444 6655554356766 568888776543
No 56
>PLN02160 thiosulfate sulfurtransferase
Probab=83.28 E-value=1.9 Score=29.38 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=16.6
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+..+++|++||..| .||...+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa 98 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKAT 98 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHH
Confidence 35678999999999 7776554
No 57
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=83.21 E-value=4.9 Score=26.11 Aligned_cols=20 Identities=10% Similarity=-0.003 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
...+|++||..|-.||+..+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 34689999998767776554
No 58
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=83.09 E-value=1.8 Score=31.42 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..+.++++++.|.+++.+|++|++. |.|.|+.++
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3456999999999999999999887 777777766
No 59
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=80.39 E-value=3.2 Score=27.77 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=15.8
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.++++|+|+|..|-.||..++
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH
Confidence 4567899999986546776543
No 60
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=80.02 E-value=1.7 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=15.3
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..+++|+|+|..| .||..++
T Consensus 59 ~~~~~ivv~C~~G-~rs~~aa 78 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQFVA 78 (100)
T ss_pred CCCCeEEEEcCCC-CcHHHHH
Confidence 4678999999999 4775544
No 61
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=78.88 E-value=3.8 Score=28.24 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCC
Q 031912 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~~~~VLVHC~~G 118 (150)
...-+++.+.++..+|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46778999999999999999999543
No 62
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=78.39 E-value=2.8 Score=29.17 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCC
Q 031912 95 DECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 95 ~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.-++.++.++...|.+|||+|..
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 37889999999999999999954
No 63
>PRK13938 phosphoheptose isomerase; Provisional
Probab=78.32 E-value=5.9 Score=28.90 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHH
Q 031912 88 TNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPH 128 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~ 128 (150)
..+.+.+.++.+.+.+.+.+|++|++. |.|+|+.++..
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~ 62 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQH 62 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHH
Confidence 345666888888888899999999987 88888887743
No 64
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=77.36 E-value=4.1 Score=26.20 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.2
Q ss_pred CCCcEEEEcCCCCcchhh
Q 031912 107 QRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~ 124 (150)
.+++|+|+|..|. ||..
T Consensus 65 ~~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCCeEEEECCCCc-hHHH
Confidence 4679999999995 6743
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=76.94 E-value=4.2 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++++|+|+|..| .||...+
T Consensus 170 kdk~IvvyC~~G-~Rs~~aa 188 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCEKAS 188 (314)
T ss_pred CcCeEEEECCCC-cHHHHHH
Confidence 678999999988 6664433
No 66
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=75.47 E-value=8.3 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=15.2
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..+.+|++||..|-.||...+
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCCeEEEEeecCCcchHHHH
Confidence 345789999985546777655
No 67
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=75.23 E-value=4.6 Score=27.64 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
..-+++.++++..+|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567889999999999999999964
No 68
>PRK01415 hypothetical protein; Validated
Probab=75.15 E-value=4.2 Score=30.88 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.4
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.++++|+++|..| .||...+
T Consensus 169 ~k~k~Iv~yCtgG-iRs~kAa 188 (247)
T PRK01415 169 LKGKKIAMVCTGG-IRCEKST 188 (247)
T ss_pred cCCCeEEEECCCC-hHHHHHH
Confidence 4678999999998 6675444
No 69
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=75.05 E-value=5.5 Score=28.00 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCC
Q 031912 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~~~~VLVHC~~G 118 (150)
.+.-+++.+.++..+|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 47789999999999999999999654
No 70
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=75.02 E-value=9.3 Score=25.94 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+.++.+.+.+.+.+|++|++. |-|-|++++
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a 50 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHH
Confidence 345888999999999999888876 555566555
No 71
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=72.95 E-value=6.8 Score=24.73 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++++|+++|..| .||...+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~~ 75 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQVA 75 (101)
T ss_pred CCCeEEEEeCCC-chHHHHH
Confidence 578999999998 5775544
No 72
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=72.76 E-value=3.2 Score=26.61 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=11.6
Q ss_pred CCcEEEEcCCCCc
Q 031912 108 RGGVLVHCFAGRS 120 (150)
Q Consensus 108 ~~~VLVHC~~G~s 120 (150)
.++||+-|.+|+|
T Consensus 3 ~~~ILl~C~~G~s 15 (95)
T TIGR00853 3 ETNILLLCAAGMS 15 (95)
T ss_pred ccEEEEECCCchh
Confidence 3689999999999
No 73
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=72.72 E-value=8 Score=25.26 Aligned_cols=21 Identities=14% Similarity=-0.123 Sum_probs=15.0
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+..+.+|+|+|..| +++++.+
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~ 96 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARA 96 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHH
Confidence 34678999999998 4454544
No 74
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=72.58 E-value=18 Score=22.70 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=37.7
Q ss_pred hCCCceEEEcCCCCCCCCCCCceEEEEeeecC---CCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 54 SRNITHILTVANALAPAHPNDFVYKVIGVADK---EDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 54 ~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~---~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.+=..||++.....-....-..-.++|.... ........+.............+..|+++|..|.. +...+
T Consensus 10 ~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~-~~~~~ 84 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWR-SGSAA 84 (113)
T ss_dssp TTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCH-HHHHH
T ss_pred hCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeecccc-cchhH
Confidence 44556778887543211011112367776443 22233343555544444445677889999966644 44444
No 75
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=71.96 E-value=9.5 Score=29.62 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=15.8
Q ss_pred cEEEEcCCCCcchhhHHH
Q 031912 110 GVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 110 ~VLVHC~~G~sRS~~v~~ 127 (150)
.|-|=|..|..||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 577889999999999883
No 76
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=71.94 E-value=14 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=13.8
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+++++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 456799999988 5555544
No 77
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=71.22 E-value=15 Score=25.87 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.+.+.++++.|.+++.++++|++. |.|.|..++.
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A~ 49 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILIC---GNGGSAADAQ 49 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHH
Confidence 345889999999998888898887 6667777663
No 78
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=70.45 E-value=11 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHH----hCCC---cEEEEcCCCCcchhhHHH
Q 031912 94 FDECISFIDEAK----RQRG---GVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 94 ~~~~~~fI~~~~----~~~~---~VLVHC~~G~sRS~~v~~ 127 (150)
++...++++..+ .+|+ .|-|=|..|..||++++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 224 LDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 444444444433 3453 477889999999999883
No 79
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=70.22 E-value=5.9 Score=31.55 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.0
Q ss_pred HhCCCcEEEEcCCCCcchh
Q 031912 105 KRQRGGVLVHCFAGRSRRC 123 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~ 123 (150)
+..|..||.||.+|..+++
T Consensus 145 I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred ccCCCEEEEecCCcccccc
Confidence 3457899999999977654
No 80
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=69.86 E-value=4.2 Score=25.37 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.2
Q ss_pred CcEEEEcCCCCcchh
Q 031912 109 GGVLVHCFAGRSRRC 123 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~ 123 (150)
++|++.|.+|+|-|.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 479999999999543
No 81
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=68.66 E-value=8.9 Score=30.11 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+|+|+|..|-.||..++
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCCcEEEEECCCChHHHHHH
Confidence 34469999976557887765
No 82
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=66.26 E-value=7.2 Score=31.08 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++.+|+|+|..|-.||..++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 67899999986667887766
No 83
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=65.60 E-value=35 Score=26.79 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=41.5
Q ss_pred eccCCeEEcChhhcCCHHH-HHhCCCceEEEcCCCCCCCCCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHh--CCC
Q 031912 33 EIEQGLFLGSIGAASNKDA-LKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR--QRG 109 (150)
Q Consensus 33 ~I~~~LylG~~~~~~~~~~-l~~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~--~~~ 109 (150)
.|.|.-.+|..-.+.+... +.+.+ +.||+....-+.. -=-+.+.-.+++.. |.+.-+++.+.+. +++
T Consensus 104 dv~p~~~vG~yl~p~~wn~~l~D~~-~vviDtRN~YE~~--------iG~F~gAv~p~~~t-FrefP~~v~~~~~~~~~K 173 (308)
T COG1054 104 DVDPLENVGTYLSPKDWNELLSDPD-VVVIDTRNDYEVA--------IGHFEGAVEPDIET-FREFPAWVEENLDLLKDK 173 (308)
T ss_pred CcCccccccCccCHHHHHHHhcCCC-eEEEEcCcceeEe--------eeeecCccCCChhh-hhhhHHHHHHHHHhccCC
Confidence 3555444454443333333 22333 5566655433211 11123333344433 7777777776654 678
Q ss_pred cEEEEcCCCCc
Q 031912 110 GVLVHCFAGRS 120 (150)
Q Consensus 110 ~VLVHC~~G~s 120 (150)
+|...|+.|+-
T Consensus 174 kVvmyCTGGIR 184 (308)
T COG1054 174 KVVMYCTGGIR 184 (308)
T ss_pred cEEEEcCCcee
Confidence 99999999986
No 84
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=63.47 E-value=7.3 Score=24.30 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=13.7
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++.+|+++|..| .||...+
T Consensus 55 ~~~~iv~~c~~G-~rs~~aa 73 (95)
T cd01534 55 RGARIVLADDDG-VRADMTA 73 (95)
T ss_pred CCCeEEEECCCC-ChHHHHH
Confidence 467899999998 4665433
No 85
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=63.05 E-value=4.2 Score=26.27 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.7
Q ss_pred CcEEEEcCCC
Q 031912 109 GGVLVHCFAG 118 (150)
Q Consensus 109 ~~VLVHC~~G 118 (150)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5999999877
No 86
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=61.63 E-value=7.3 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.4
Q ss_pred HhCCCcEEEEcCCCCcchhh
Q 031912 105 KRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~ 124 (150)
+..+.+|+|+|..| .||..
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~ 76 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL 76 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH
Confidence 35678999999887 56644
No 87
>PRK07411 hypothetical protein; Validated
Probab=60.87 E-value=8 Score=31.28 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++++|+|+|..|. ||...+
T Consensus 341 ~d~~IVvyC~~G~-RS~~aa 359 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKAL 359 (390)
T ss_pred CCCeEEEECCCCH-HHHHHH
Confidence 5779999999885 775544
No 88
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=59.88 E-value=18 Score=27.13 Aligned_cols=47 Identities=30% Similarity=0.399 Sum_probs=28.3
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 82 VADKEDTNLSQYFDECISFIDEAKRQR-GGVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 82 ~~D~~~~~l~~~~~~~~~fI~~~~~~~-~~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
+.|..-.. +++.....++.+.++| ++|+|||- .|..-+|.-+ ..|+-
T Consensus 36 lSdGGVHS---h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~--~~yl~ 84 (223)
T PF06415_consen 36 LSDGGVHS---HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSA--LKYLE 84 (223)
T ss_dssp ESS-SSS-----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTH--HHHHH
T ss_pred ecCCCccc---cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchH--HHHHH
Confidence 34544443 3445555566666788 67999995 5998888877 66654
No 89
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=59.66 E-value=9.6 Score=25.08 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.4
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..+++++++|..| .||...+
T Consensus 70 ~~~~~ivv~C~~G-~rs~~aa 89 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQTAV 89 (122)
T ss_pred CCCCcEEEECCCC-CcHHHHH
Confidence 4678999999999 4776444
No 90
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=59.50 E-value=7.6 Score=27.31 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.++++|+++|..|..||...+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa 134 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAA 134 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHH
Confidence 467899999999887887644
No 91
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=59.47 E-value=7.9 Score=24.18 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=14.7
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
..+++|+|+|..| .||...+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~~ 73 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFAA 73 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHHH
Confidence 4678999999877 5675544
No 92
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=59.17 E-value=6.2 Score=24.37 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.1
Q ss_pred cEEEEcCCCCcchhh
Q 031912 110 GVLVHCFAGRSRRCH 124 (150)
Q Consensus 110 ~VLVHC~~G~sRS~~ 124 (150)
++|+-|.+|++-|..
T Consensus 1 kIlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 1 KILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEEESSSSHHHHH
T ss_pred CEEEECCChHHHHHH
Confidence 589999999995543
No 93
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=59.07 E-value=8.5 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=15.2
Q ss_pred hCCCcEEEEcC-CCCcchhhHH
Q 031912 106 RQRGGVLVHCF-AGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~-~G~sRS~~v~ 126 (150)
.++++|++||. +| .||+.++
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~aa 86 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRMA 86 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHHH
Confidence 46789999997 55 7776655
No 94
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=56.56 E-value=9.4 Score=24.10 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCCcchhhH
Q 031912 107 QRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v 125 (150)
++.+|+|+|..|. ||..+
T Consensus 65 ~~~~ivv~c~~g~-~s~~~ 82 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA 82 (106)
T ss_pred CCCeEEEECCCcH-HHHHH
Confidence 5789999999885 66443
No 95
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=56.50 E-value=26 Score=27.08 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=17.3
Q ss_pred hCCC---cEEEEcCCCCcchhhHHH
Q 031912 106 RQRG---GVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 106 ~~~~---~VLVHC~~G~sRS~~v~~ 127 (150)
.+|+ .|-|=|..|..||++++=
T Consensus 238 ~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 238 KEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred hcCCeEEEEEEccCCCccchHHHHH
Confidence 3565 456789999999999883
No 96
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=55.81 E-value=22 Score=21.78 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=14.2
Q ss_pred HhCCCcEEEEcCCCCcchhhH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v 125 (150)
+..+.+++|+|..| .||..+
T Consensus 53 ~~~~~~ivv~c~~g-~~s~~a 72 (96)
T cd01444 53 LDRDRPVVVYCYHG-NSSAQL 72 (96)
T ss_pred cCCCCCEEEEeCCC-ChHHHH
Confidence 45778999999966 455443
No 97
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=55.47 E-value=15 Score=29.49 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=11.6
Q ss_pred HhCCCcEEEEcCCCC
Q 031912 105 KRQRGGVLVHCFAGR 119 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~ 119 (150)
+..|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 335788999998873
No 98
>PRK13936 phosphoheptose isomerase; Provisional
Probab=55.40 E-value=38 Score=24.48 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.+.++++.+.+.+.++++|++. |.|.|+.++
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A 58 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADA 58 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHH
Confidence 44677888888888899999988 777777766
No 99
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=54.89 E-value=8.2 Score=25.23 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.4
Q ss_pred CcEEEEcCCCCcch
Q 031912 109 GGVLVHCFAGRSRR 122 (150)
Q Consensus 109 ~~VLVHC~~G~sRS 122 (150)
++||+-|.+|.|-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999644
No 100
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=54.56 E-value=12 Score=23.61 Aligned_cols=18 Identities=0% Similarity=0.004 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCcchhhHH
Q 031912 108 RGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS~~v~ 126 (150)
+++|+++|..|. ||..++
T Consensus 65 ~~~vv~~c~~g~-~s~~~a 82 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA 82 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH
Confidence 678999999985 675544
No 101
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.92 E-value=21 Score=22.11 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+|+|+|..|...++..+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~a 68 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRA 68 (92)
T ss_pred CCCeEEEEeCCCCchHHHHH
Confidence 46799999999854433444
No 102
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=53.45 E-value=10 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=15.8
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+..+++++++|..|. ||...+
T Consensus 446 l~~~~~iivyC~~G~-rS~~aa 466 (482)
T PRK01269 446 LDQSKTYLLYCDRGV-MSRLQA 466 (482)
T ss_pred cCCCCeEEEECCCCH-HHHHHH
Confidence 356789999999995 675544
No 103
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=53.10 E-value=14 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=14.6
Q ss_pred HhCCCcEEEEcCCCCcchhhHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+..+++|+++|..| .||...+
T Consensus 51 ~~~~~~iv~~c~~g-~~s~~~~ 71 (99)
T cd01527 51 LVGANAIIFHCRSG-MRTQQNA 71 (99)
T ss_pred CCCCCcEEEEeCCC-chHHHHH
Confidence 34678999999998 4454433
No 104
>PRK13937 phosphoheptose isomerase; Provisional
Probab=52.57 E-value=48 Score=23.71 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+.++++-+.+.+.++++|++. |.|-|+.++
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~---G~G~S~~~A 53 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLC---GNGGSAADA 53 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHH
Confidence 456888888888888899998877 666666544
No 105
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.65 E-value=12 Score=23.83 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=12.7
Q ss_pred CcEEEEcCCCCcchhh
Q 031912 109 GGVLVHCFAGRSRRCH 124 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~ 124 (150)
.+||+-|.+|++-|-.
T Consensus 3 ~kILvvCgsG~~TS~m 18 (94)
T PRK10310 3 RKIIVACGGAVATSTM 18 (94)
T ss_pred CeEEEECCCchhHHHH
Confidence 3799999999985544
No 106
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=50.54 E-value=14 Score=24.14 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.6
Q ss_pred CCcEEEEcCCCCcch
Q 031912 108 RGGVLVHCFAGRSRR 122 (150)
Q Consensus 108 ~~~VLVHC~~G~sRS 122 (150)
.++||+-|.+|.|-|
T Consensus 3 ~kkIllvC~~G~sTS 17 (106)
T PRK10499 3 KKHIYLFCSAGMSTS 17 (106)
T ss_pred CCEEEEECCCCccHH
Confidence 358999999999955
No 107
>PRK05320 rhodanese superfamily protein; Provisional
Probab=50.36 E-value=27 Score=26.55 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
++++|+++|..| .||...+
T Consensus 174 kdk~IvvyC~~G-~Rs~~Aa 192 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCEKAA 192 (257)
T ss_pred CCCeEEEECCCC-HHHHHHH
Confidence 678999999999 5665544
No 108
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=50.06 E-value=11 Score=29.22 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.1
Q ss_pred HhCCCcEEEEcCCCCcchhhHHHHHHHH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHLFPHLGYF 132 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v~~~~ayl 132 (150)
+...+.|.++|..|+.-|.+..+ +.++
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~a-l~~l 257 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLA-LAEL 257 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHH-HHHh
Confidence 55678999999999776666443 3443
No 109
>PRK02947 hypothetical protein; Provisional
Probab=49.98 E-value=35 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.++++++.|.+.+.++++|++. |.|.|..++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 355889999999999999999988 666666665
No 110
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=49.71 E-value=14 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
.+.+|+++|..| .||...+
T Consensus 57 ~~~~vvlyC~~G-~rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAG-RQSGMAK 75 (101)
T ss_pred CCCeEEEEeCCC-HHHHHHH
Confidence 456899999999 4665554
No 111
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=49.45 E-value=46 Score=24.55 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.|.++++.|-+ ..++|+|- |+|||+.++-
T Consensus 27 ~~~~a~~~i~~---~~gkv~V~---G~GkSG~Igk 55 (202)
T COG0794 27 DFVRAVELILE---CKGKVFVT---GVGKSGLIGK 55 (202)
T ss_pred HHHHHHHHHHh---cCCcEEEE---cCChhHHHHH
Confidence 34445444443 36789886 9999999883
No 112
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.81 E-value=13 Score=23.72 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=11.3
Q ss_pred cEEEEcCCCCcch
Q 031912 110 GVLVHCFAGRSRR 122 (150)
Q Consensus 110 ~VLVHC~~G~sRS 122 (150)
+||+-|.+|++-|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999865
No 113
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=48.70 E-value=14 Score=23.32 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 98 ISFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 98 ~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.+++..++..+++|+|++..|..=.+++.+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L~~ 33 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRVKA 33 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEEEE
Confidence 356778888899999999999887777653
No 114
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=48.69 E-value=12 Score=29.69 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.5
Q ss_pred HhCCCcEEEEcCCC
Q 031912 105 KRQRGGVLVHCFAG 118 (150)
Q Consensus 105 ~~~~~~VLVHC~~G 118 (150)
+.+|.+||-||.+|
T Consensus 147 l~~~~~VLThCNaG 160 (346)
T COG0182 147 LPDGDTVLTHCNAG 160 (346)
T ss_pred hccCCeEEeeecCC
Confidence 34578999999988
No 115
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=48.56 E-value=14 Score=27.98 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=46.6
Q ss_pred CeEEcCh-hhcCCHHHHHhCCCceEEEcCCCCCCC---------CCCCceEEEEeeecCCC---CC--HHHHHHHHHHHH
Q 031912 37 GLFLGSI-GAASNKDALKSRNITHILTVANALAPA---------HPNDFVYKVIGVADKED---TN--LSQYFDECISFI 101 (150)
Q Consensus 37 ~LylG~~-~~~~~~~~l~~~gI~~Vvnl~~~~~~~---------~~~~~~~~~ip~~D~~~---~~--l~~~~~~~~~fI 101 (150)
.+..|++ ....=.+++++++|+.||+.+.+.-.. -..++.|+++.=..... ++ ....++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 3788998 443334678899999999999864311 14567777776443321 22 223367777766
Q ss_pred HHHHhCCCcEEEE
Q 031912 102 DEAKRQRGGVLVH 114 (150)
Q Consensus 102 ~~~~~~~~~VLVH 114 (150)
.+. .+++||.=
T Consensus 126 ~~~--~~~~iflt 136 (249)
T PF02571_consen 126 KEL--GGGRIFLT 136 (249)
T ss_pred hhc--CCCCEEEe
Confidence 432 33677763
No 116
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=48.43 E-value=20 Score=27.63 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=16.6
Q ss_pred HHhCCCcEEEEcCCCCcchhhH
Q 031912 104 AKRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 104 ~~~~~~~VLVHC~~G~sRS~~v 125 (150)
.+.+.++++|.|.+|+|.+..+
T Consensus 15 ~i~~~~~ivvlTGAGiS~~SGI 36 (285)
T PRK05333 15 FVERHPRLFVLTGAGISTDSGI 36 (285)
T ss_pred HHHhCCcEEEEeCCccccccCC
Confidence 3445678999999999977543
No 117
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=47.92 E-value=16 Score=26.08 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCeeccCCeEEcChhhcCCHHH--HHhCCCceEE
Q 031912 30 VPFEIEQGLFLGSIGAASNKDA--LKSRNITHIL 61 (150)
Q Consensus 30 ~p~~I~~~LylG~~~~~~~~~~--l~~~gI~~Vv 61 (150)
.|+-..|++|+-++.+. +.+. |++.||+.||
T Consensus 13 ~p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li 45 (168)
T PF09419_consen 13 NPSLLLPHLYVPSIRDI-DFEANHLKKKGIKALI 45 (168)
T ss_pred CccccCCCEEcCChhhC-CcchhhhhhcCceEEE
Confidence 68889999999998864 5677 9999999988
No 118
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=47.83 E-value=18 Score=24.13 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.0
Q ss_pred CCCCcchhhHHHHHHHHH
Q 031912 116 FAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 116 ~~G~sRS~~v~~~~aylm 133 (150)
..|++|+.+.+ ++||+
T Consensus 22 ~lgi~R~vA~t--lv~L~ 37 (124)
T COG4738 22 ILGIPRNVATT--LVCLA 37 (124)
T ss_pred HcCCCchHHHH--HHHHh
Confidence 35899999999 89998
No 119
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=46.61 E-value=23 Score=28.15 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCCC
Q 031912 98 ISFIDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 98 ~~fI~~~~~~~~~VLVHC~~G~ 119 (150)
.++-.+.+..|..||.||.+|-
T Consensus 127 ~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 127 GEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHHcCCCCEEEEeCCCCc
Confidence 3444445567889999999884
No 120
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.48 E-value=43 Score=22.08 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=23.9
Q ss_pred CeEEcChhhcCCHHHHHhCCCceEEEcCCCC
Q 031912 37 GLFLGSIGAASNKDALKSRNITHILTVANAL 67 (150)
Q Consensus 37 ~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~ 67 (150)
-+++|+.....+.+.++++|++.++......
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~ 113 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Confidence 3888876655667889999999999876543
No 121
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=45.43 E-value=34 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=13.0
Q ss_pred HhCCCcEEEEcCCCCcchhh
Q 031912 105 KRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~ 124 (150)
...+.+|+|+|..| .|+..
T Consensus 53 ~~~~~~iv~~c~~g-~~a~~ 71 (100)
T smart00450 53 LDKDKPVVVYCRSG-NRSAK 71 (100)
T ss_pred CCCCCeEEEEeCCC-cHHHH
Confidence 34678999999655 45533
No 122
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=44.39 E-value=19 Score=23.09 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=15.7
Q ss_pred HhCCCcEEEEcCCCCc-chhhHH
Q 031912 105 KRQRGGVLVHCFAGRS-RRCHLF 126 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~s-RS~~v~ 126 (150)
+..+++|+|+|..|.. ||..++
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a 83 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA 83 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH
Confidence 4567899999998863 554444
No 123
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=43.85 E-value=48 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=14.0
Q ss_pred HhCCCcEEEEcCCCCcchhh
Q 031912 105 KRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~ 124 (150)
+..+++++|+|..|. ||..
T Consensus 55 ~~~~~~ivv~c~~g~-~s~~ 73 (108)
T PRK00162 55 ADFDTPVMVMCYHGN-SSQG 73 (108)
T ss_pred cCCCCCEEEEeCCCC-CHHH
Confidence 346789999999885 5543
No 124
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=43.22 E-value=30 Score=27.51 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.2
Q ss_pred HhCCC----cEEEEcCCC
Q 031912 105 KRQRG----GVLVHCFAG 118 (150)
Q Consensus 105 ~~~~~----~VLVHC~~G 118 (150)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34577 899999988
No 125
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=43.01 E-value=29 Score=27.73 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=13.5
Q ss_pred HhCCCcEEEEcCCCCcch
Q 031912 105 KRQRGGVLVHCFAGRSRR 122 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS 122 (150)
+..|..||.||.+|.-.+
T Consensus 144 I~~g~~ILThc~sg~lat 161 (344)
T PRK05720 144 IRKGQGILTHCNAGWLAT 161 (344)
T ss_pred ccCCCEEEEecCCCccee
Confidence 345788999999986443
No 126
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=42.02 E-value=26 Score=28.14 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.1
Q ss_pred CCCcEEEEcCCCC
Q 031912 107 QRGGVLVHCFAGR 119 (150)
Q Consensus 107 ~~~~VLVHC~~G~ 119 (150)
.|. ||.||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 344 999998874
No 127
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=41.80 E-value=1.1e+02 Score=20.76 Aligned_cols=55 Identities=7% Similarity=0.186 Sum_probs=29.0
Q ss_pred EEEEeeecCCCCC-HHHHHHHHHHHHHHHHhCCCc-EEEEcCCCCcchhhHHHHHHHHH
Q 031912 77 YKVIGVADKEDTN-LSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 77 ~~~ip~~D~~~~~-l~~~~~~~~~fI~~~~~~~~~-VLVHC~~G~sRS~~v~~~~aylm 133 (150)
-..+|+.|...+. ....++.+.+.|.+...+++. .+--|-+|=-++.++. ++|.+
T Consensus 56 ~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~--~~~a~ 112 (124)
T TIGR03642 56 KIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTII--LALYA 112 (124)
T ss_pred EeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHH--HHHHH
Confidence 3334566655443 233344455555555555543 4555678855666666 44443
No 128
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=40.97 E-value=45 Score=26.29 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhh
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~ 124 (150)
....++.-++.+.+++++++.++||=.+|+|-++.
T Consensus 37 ~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~ 71 (353)
T KOG1905|consen 37 PPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAG 71 (353)
T ss_pred CHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccC
Confidence 34457777888888889999999999999996654
No 129
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=40.30 E-value=1.3e+02 Score=24.67 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCCceEEEEeeecCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCcchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 031912 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR-QRGGVLVHCFAGRSRRCHLFPHLGYFSMIILVYSNDNRPSE 147 (150)
Q Consensus 72 ~~~~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~-~~~~VLVHC~~G~sRS~~v~~~~aylm~~a~~~v~~~Rp~i 147 (150)
.-++.|..+|+.+....|+.. |.++++ +-+-|+|.=..|.+.-.++. + --+.+++++||+.+|.+
T Consensus 126 e~Gi~Y~~v~L~~dg~~D~~~--------i~~~~~~~tk~v~IQRSrGYs~R~sl~--i-~~I~~~i~~vk~~~p~~ 191 (403)
T PF06838_consen 126 EFGIKYREVPLTEDGTIDWEA--------IKKALKPNTKMVLIQRSRGYSWRPSLT--I-EEIKEIIKFVKEINPDV 191 (403)
T ss_dssp GGT-EEEE--B-TTSSB-HHH--------HHHHHHTTEEEEEEE-S-TTSSS------H-HHHHHHHHHHHHH-TTS
T ss_pred HhCceeEEEeecCCCCcCHHH--------HHHhhccCceEEEEecCCCCCCCCCCC--H-HHHHHHHHHHHhhCCCe
Confidence 457899999999877776654 333333 44678888778888555555 1 24567999999999964
No 130
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=39.79 E-value=49 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHH----hCCCcEEEEcCCCCcch
Q 031912 88 TNLSQYFDECISFIDEAK----RQRGGVLVHCFAGRSRR 122 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~----~~~~~VLVHC~~G~sRS 122 (150)
..+...+.++..|.++.+ .+|++|+|+|....-|+
T Consensus 132 EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~ 170 (214)
T KOG0235|consen 132 ESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA 170 (214)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH
Confidence 346666777777776554 46899999987633344
No 131
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=39.67 E-value=44 Score=23.00 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=32.6
Q ss_pred HHhCCCceEEEcCCCCCCCCCCCceEEEEeeecCCCCC-H-HHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhH
Q 031912 52 LKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTN-L-SQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 52 l~~~gI~~Vvnl~~~~~~~~~~~~~~~~ip~~D~~~~~-l-~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v 125 (150)
|-+.+=...|++.+..+-...+--.-..||+.-.+..- + .+.|..-+.+..- ...+.++++|..| .||...
T Consensus 33 L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp--~~d~eiIf~C~SG-~Rs~~A 105 (136)
T KOG1530|consen 33 LLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKP--PHDKEIIFGCASG-VRSLKA 105 (136)
T ss_pred HhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCC--CCCCcEEEEeccC-cchhHH
Confidence 33444456667765443221112344556653222211 1 1223333332111 1235899999999 566443
No 132
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=39.40 E-value=30 Score=26.76 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=11.2
Q ss_pred HHhCCCcEEEEcCCC
Q 031912 104 AKRQRGGVLVHCFAG 118 (150)
Q Consensus 104 ~~~~~~~VLVHC~~G 118 (150)
.+..|..||.||.+|
T Consensus 106 ~I~~g~~ILTh~~S~ 120 (275)
T PRK08335 106 LIDDGDVIITHSFSS 120 (275)
T ss_pred HcCCCCEEEEECCcH
Confidence 344678899999773
No 133
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=39.08 E-value=21 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=14.3
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.++++|+++|..|. ||..++
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~~ 95 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVLL 95 (118)
T ss_pred CCCCCEEEECCcHH-HHHHHH
Confidence 36789999999873 555433
No 134
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=37.42 E-value=30 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHh-CCCcEEEEcCCCCcchhhHHH
Q 031912 92 QYFDECISFIDEAKR-QRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~-~~~~VLVHC~~G~sRS~~v~~ 127 (150)
++|++|++|+.+.-. .+++|-|+ |.||.+-++.
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~---G~SkGaelAL 37 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGII---GISKGAELAL 37 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEE---EETHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEE---EECHHHHHHH
Confidence 579999999998744 45788888 8999988874
No 135
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=36.75 E-value=41 Score=26.31 Aligned_cols=14 Identities=43% Similarity=0.722 Sum_probs=10.9
Q ss_pred HhCCCcEEEEcCCC
Q 031912 105 KRQRGGVLVHCFAG 118 (150)
Q Consensus 105 ~~~~~~VLVHC~~G 118 (150)
+..|..||.||.+|
T Consensus 116 I~~g~~ILT~~~Sg 129 (303)
T TIGR00524 116 IKDGDTVLTHCNAG 129 (303)
T ss_pred ccCCCEEEEecCCc
Confidence 34578899999875
No 136
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=36.34 E-value=18 Score=22.82 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=14.8
Q ss_pred CCCeeccCCeEEcChhhc
Q 031912 29 RVPFEIEQGLFLGSIGAA 46 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~ 46 (150)
.+..||.+++|+|+....
T Consensus 19 rwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 19 RWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred heeEecCCCcEEcCCCHH
Confidence 467899999999987654
No 137
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=35.39 E-value=37 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=13.7
Q ss_pred HhCCCcEEEEcCCCCcchhh
Q 031912 105 KRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~ 124 (150)
..++.+|+++|..| .||..
T Consensus 47 ~~~~~~vv~~c~~~-~~a~~ 65 (89)
T cd00158 47 LDKDKPIVVYCRSG-NRSAR 65 (89)
T ss_pred cCCCCeEEEEeCCC-chHHH
Confidence 34678999999987 34433
No 138
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.31 E-value=30 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=12.0
Q ss_pred CcEEEEcCCCCcch
Q 031912 109 GGVLVHCFAGRSRR 122 (150)
Q Consensus 109 ~~VLVHC~~G~sRS 122 (150)
+++|+-|.+|.|-|
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 47899999999955
No 139
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=35.18 E-value=46 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcC
Q 031912 94 FDECISFIDEAKRQRGGVLVHCF 116 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~ 116 (150)
+.++.+.++.+...|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 67788888888899999999996
No 140
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=35.09 E-value=39 Score=25.27 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHhCCCcEEEEcCCCCcchhh
Q 031912 103 EAKRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 103 ~~~~~~~~VLVHC~~G~sRS~~ 124 (150)
+.+.+.++++|.+.+|+|.++-
T Consensus 8 ~~i~~~~~ivi~tGAGiS~~sG 29 (242)
T PRK00481 8 EILDKAKRIVVLTGAGISAESG 29 (242)
T ss_pred HHHHhCCCEEEEeCCccccccC
Confidence 3344567999999999997754
No 141
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=34.78 E-value=1.1e+02 Score=23.00 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=32.8
Q ss_pred EEeeecCCCC-CHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 79 VIGVADKEDT-NLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 79 ~ip~~D~~~~-~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
..|+.|..++ +.....+.+++.|.+...+.+..+.-|-+|=-++.++. ++|.+
T Consensus 81 g~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~--~~~a~ 134 (224)
T PF09623_consen 81 GLPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFY--AGYAA 134 (224)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHH--HHHHH
Confidence 3455555443 23333566666777777775677777888966777776 45543
No 142
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=34.76 E-value=35 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcchhhHH
Q 031912 109 GGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~ 126 (150)
.++++-|.+|.|-|-.+.
T Consensus 1 ~~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 1 KKILVACGTGVATSTVVA 18 (89)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 379999999998554433
No 143
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.47 E-value=40 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=23.6
Q ss_pred eEEcChhhcCCHHHHHhCCCceEEEcCCC
Q 031912 38 LFLGSIGAASNKDALKSRNITHILTVANA 66 (150)
Q Consensus 38 LylG~~~~~~~~~~l~~~gI~~Vvnl~~~ 66 (150)
+++|+.....+.+.++++|++.++.....
T Consensus 87 vivGG~~~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 87 VVVGGVIPPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred EEEeCCCChHhHHHHHHCCCCEEECCCCC
Confidence 88898766677888999999999877653
No 144
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.37 E-value=1.1e+02 Score=20.43 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCcchhh
Q 031912 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~ 124 (150)
.+.+..+-+..+...+.+|+|..-.|.|++-.
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 46677777888888899999999999999853
No 145
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=34.14 E-value=41 Score=25.67 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=9.4
Q ss_pred CCCcchhhHHH
Q 031912 117 AGRSRRCHLFP 127 (150)
Q Consensus 117 ~G~sRS~~v~~ 127 (150)
=|+|||++.++
T Consensus 160 PGiSRSG~TI~ 170 (255)
T TIGR00753 160 PGVSRSGSTIS 170 (255)
T ss_pred cCCCCchHHHH
Confidence 39999999885
No 146
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=34.11 E-value=42 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=9.5
Q ss_pred CCCcchhhHHH
Q 031912 117 AGRSRRCHLFP 127 (150)
Q Consensus 117 ~G~sRS~~v~~ 127 (150)
=|+|||++.++
T Consensus 160 PGiSRSG~Ti~ 170 (259)
T PF02673_consen 160 PGISRSGATIT 170 (259)
T ss_pred CCcChHHHHHH
Confidence 49999999884
No 147
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=33.95 E-value=22 Score=27.65 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=12.9
Q ss_pred HHHHhCCCceEEEcCCCCC
Q 031912 50 DALKSRNITHILTVANALA 68 (150)
Q Consensus 50 ~~l~~~gI~~Vvnl~~~~~ 68 (150)
...+++||.++=-...|.+
T Consensus 123 ~~Ykql~i~a~G~~~~E~e 141 (287)
T PF05582_consen 123 KVYKQLGIPAVGIHVPEKE 141 (287)
T ss_pred HHHHHcCCceEEEEechHH
Confidence 4556789988876665543
No 148
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=33.69 E-value=29 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.383 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcchhhHH
Q 031912 110 GVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 110 ~VLVHC~~G~sRS~~v~ 126 (150)
++++-|..|.+-|..+.
T Consensus 1 ~il~vc~~G~~~s~~l~ 17 (84)
T cd00133 1 KILVVCGSGIGSSSMLA 17 (84)
T ss_pred CEEEECCCcHhHHHHHH
Confidence 58999999988554443
No 149
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=33.44 E-value=56 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=14.7
Q ss_pred HhCCCcEEEEcCCCCcchhhH
Q 031912 105 KRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~v 125 (150)
+..+++|.++|..|. ||+.+
T Consensus 220 i~~~~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 220 ITPDKEVITHCQTHH-RSGFT 239 (610)
T ss_pred CCCCCCEEEECCCCh-HHHHH
Confidence 346789999999985 55443
No 150
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=33.29 E-value=57 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCcch
Q 031912 87 DTNLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 87 ~~~l~~~~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS 122 (150)
.+++.+...++.+++++.+. .+++|||-|..|+-|+
T Consensus 148 GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ 187 (227)
T PRK14118 148 AENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA 187 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH
Confidence 35566667888888877543 4678999999997775
No 151
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=33.05 E-value=43 Score=25.87 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=9.3
Q ss_pred CCCcchhhHHH
Q 031912 117 AGRSRRCHLFP 127 (150)
Q Consensus 117 ~G~sRS~~v~~ 127 (150)
=|+|||++.++
T Consensus 166 PGiSRSG~TI~ 176 (276)
T PRK12554 166 PGVSRSGATII 176 (276)
T ss_pred cCCCCchHHHH
Confidence 39999999884
No 152
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.12 E-value=24 Score=27.26 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=13.0
Q ss_pred HHHHhCCCceEEEcCCCCC
Q 031912 50 DALKSRNITHILTVANALA 68 (150)
Q Consensus 50 ~~l~~~gI~~Vvnl~~~~~ 68 (150)
+..+++|+.++=-...|.+
T Consensus 122 ~~Ykql~i~a~G~~~~E~e 140 (283)
T TIGR02855 122 KLYKKIGVPVVGIHCKEKE 140 (283)
T ss_pred HHHHHhCCceEEEEecchh
Confidence 4556789988876665543
No 153
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=31.97 E-value=2.1e+02 Score=21.15 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHhCCCceEEEcCCC---CCCCC---CCCceEEEEeeecCC---CCC-HHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 49 KDALKSRNITHILTVANA---LAPAH---PNDFVYKVIGVADKE---DTN-LSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 49 ~~~l~~~gI~~Vvnl~~~---~~~~~---~~~~~~~~ip~~D~~---~~~-l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.+.|+++|+..|+.-... .++.. ..++.|.++-=.... ... -.+.+++..+.|.....+|+.|+|-...
T Consensus 135 ~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 135 FELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 567899999999987766 33222 236677776544322 111 1234888888899888888888887755
No 154
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.90 E-value=40 Score=20.49 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcchhhHH
Q 031912 110 GVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 110 ~VLVHC~~G~sRS~~v~ 126 (150)
+++|-|.+|++=|..+.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 48999999998554433
No 155
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=31.21 E-value=75 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCcch
Q 031912 88 TNLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS 122 (150)
+++.+...++..++++.+. .+++|||-|+.|+-|+
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ 188 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA 188 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH
Confidence 4566667788888877542 4689999999998776
No 156
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=30.86 E-value=39 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcchhhHH
Q 031912 109 GGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~ 126 (150)
.++|+-|.+|++-|-.+-
T Consensus 2 ~KIL~aCG~GvgSS~~ik 19 (93)
T COG3414 2 IKILAACGNGVGSSTMIK 19 (93)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 479999999999765544
No 157
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.67 E-value=1.3e+02 Score=23.22 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 95 DECISFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 95 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.+..+.|.+.+.+|+.+++.--.|.|.|.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLC 46 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHH
Confidence 344455666677889999999999999977663
No 158
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.67 E-value=1.3e+02 Score=23.22 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHH
Q 031912 95 DECISFIDEAKRQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 95 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.+..+.|.+.+.+|+.+++.--.|.|.|.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLC 46 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHH
Confidence 344455666677889999999999999977663
No 159
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.66 E-value=40 Score=21.80 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=10.4
Q ss_pred cEEEEcCCCCcchhhHH
Q 031912 110 GVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 110 ~VLVHC~~G~sRS~~v~ 126 (150)
+||+-|.+| .|.+++
T Consensus 2 ~Ill~C~~G--aSSs~l 16 (99)
T cd05565 2 NVLVLCAGG--GTSGLL 16 (99)
T ss_pred EEEEECCCC--CCHHHH
Confidence 589999888 444444
No 160
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=30.56 E-value=36 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCcchhhHH
Q 031912 109 GGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 109 ~~VLVHC~~G~sRS~~v~ 126 (150)
.+|+|||..| .||...+
T Consensus 333 ~~Ivv~C~sG-~RS~~Aa 349 (370)
T PRK05600 333 DNVVVYCASG-IRSADFI 349 (370)
T ss_pred CcEEEECCCC-hhHHHHH
Confidence 3899999999 6776544
No 161
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=30.15 E-value=61 Score=20.58 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCcch
Q 031912 98 ISFIDEAKRQRGGVLVHCFAGRSRR 122 (150)
Q Consensus 98 ~~fI~~~~~~~~~VLVHC~~G~sRS 122 (150)
+..+...+....+|.|||..|.+|.
T Consensus 16 ~~~~~~~~~~~~~V~i~l~~~~~r~ 40 (89)
T PTZ00138 16 INQIFRFFTEKTRVQIWLYDHPNLR 40 (89)
T ss_pred HHHHHHHhcCCcEEEEEEEeCCCcE
Confidence 3455666667789999998876653
No 162
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.94 E-value=53 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEcCCCCc
Q 031912 93 YFDECISFIDEAKRQR-GGVLVHCFAGRS 120 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~~-~~VLVHC~~G~s 120 (150)
.+..+++++...-..+ .-+|.||..+..
T Consensus 147 Ei~~Av~~i~~~G~~~~~i~llhC~s~YP 175 (329)
T TIGR03569 147 EIEAAVGVLRDAGTPDSNITLLHCTTEYP 175 (329)
T ss_pred HHHHHHHHHHHcCCCcCcEEEEEECCCCC
Confidence 3778888775422111 367999987644
No 163
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.86 E-value=53 Score=25.24 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=9.4
Q ss_pred CCCcchhhHHH
Q 031912 117 AGRSRRCHLFP 127 (150)
Q Consensus 117 ~G~sRS~~v~~ 127 (150)
=|+|||++-++
T Consensus 164 PGiSRSG~TI~ 174 (268)
T PRK00281 164 PGTSRSGATIS 174 (268)
T ss_pred CCCCccHHHHH
Confidence 49999999884
No 164
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.84 E-value=1e+02 Score=19.60 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
++.+.++|+.....|+++++.-..+ +||..-.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~ 47 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEY 47 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHH
Confidence 6778999999999998888886554 5664444
No 165
>PRK10318 hypothetical protein; Provisional
Probab=29.30 E-value=71 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHh----CCCcEEEEcCCCCcch
Q 031912 94 FDECISFIDEAKR----QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 94 ~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS 122 (150)
+..+-+||+.+-. .|++=.|+|..|-.++
T Consensus 70 i~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~ 102 (121)
T PRK10318 70 IDTAEQFIDKVASSSSISGKPYIVKCPGKSDEN 102 (121)
T ss_pred cccHHHHHHHHhhhcccCCCCeEEEcCCCCccc
Confidence 4557788888776 4899999999996543
No 166
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=29.28 E-value=92 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCc
Q 031912 85 KEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS 120 (150)
Q Consensus 85 ~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~s 120 (150)
.+-.++.+ +++|++++.+.. ...-+|.||.++.-
T Consensus 120 TG~stl~E-I~~Av~~~~~~~-~~~l~llHC~s~YP 153 (241)
T PF03102_consen 120 TGMSTLEE-IERAVEVLREAG-NEDLVLLHCVSSYP 153 (241)
T ss_dssp -TT--HHH-HHHHHHHHHHHC-T--EEEEEE-SSSS
T ss_pred CCCCCHHH-HHHHHHHHHhcC-CCCEEEEecCCCCC
Confidence 33344444 888888884433 34589999998754
No 167
>PRK10425 DNase TatD; Provisional
Probab=28.82 E-value=67 Score=24.36 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=8.1
Q ss_pred HHHHHhCCCcEEEEcCCCC
Q 031912 101 IDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 101 I~~~~~~~~~VLVHC~~G~ 119 (150)
++-+.+.+.+|.|||....
T Consensus 114 l~lA~~~~~Pv~iH~r~a~ 132 (258)
T PRK10425 114 LAIAAELNMPVFMHCRDAH 132 (258)
T ss_pred HHHHHHhCCCeEEEEeCch
Confidence 3333334444444444433
No 168
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=28.66 E-value=52 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=13.5
Q ss_pred HhCCCcEEEEcCCCCcchhh
Q 031912 105 KRQRGGVLVHCFAGRSRRCH 124 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~sRS~~ 124 (150)
+..+++|+++|..| .||..
T Consensus 48 ~~~~~~vvl~c~~g-~~a~~ 66 (90)
T cd01524 48 LPKDKEIIVYCAVG-LRGYI 66 (90)
T ss_pred cCCCCcEEEEcCCC-hhHHH
Confidence 35678999999987 34433
No 169
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=28.58 E-value=1.2e+02 Score=25.56 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhCC-CcEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 91 SQYFDECISFIDEAKRQR-GGVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~-~~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
..+.+.....++.+..+| ++|++||. .|..-.|.-+ ..|+-
T Consensus 123 HSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~--~~~le 165 (509)
T COG0696 123 HSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPRSA--LQYLE 165 (509)
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCchhH--HHHHH
Confidence 334555666677777787 79999994 6887777766 45543
No 170
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=28.36 E-value=1.3e+02 Score=25.43 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=33.5
Q ss_pred eEEEEe-eecCCCCCHHHHHHHHHHHHHHHHhCCC-cEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 76 VYKVIG-VADKEDTNLSQYFDECISFIDEAKRQRG-GVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 76 ~~~~ip-~~D~~~~~l~~~~~~~~~fI~~~~~~~~-~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
..|-+- +.|..-. .+++.....++.+.++|- +|+|||. .|+.-++.-+ ..|+-
T Consensus 107 ~lHl~GL~SdGgVH---sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~--~~~~~ 162 (501)
T TIGR01307 107 KLHLMGLVSDGGVH---SHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSA--ESYLE 162 (501)
T ss_pred ceEEEEeccCCCCc---chHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhH--HHHHH
Confidence 334444 3344433 345555566666777775 8999994 6888787777 66654
No 171
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.15 E-value=99 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCC
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G~ 119 (150)
..-...+|+-+.+.+.+|.|||+...
T Consensus 111 ~~~F~~ql~lA~~~~lPviIH~R~A~ 136 (256)
T COG0084 111 EEVFEAQLELAKELNLPVIIHTRDAH 136 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccH
Confidence 34444566667677777777776543
No 172
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=27.95 E-value=99 Score=21.13 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=12.3
Q ss_pred hCCCcEEEEcCCCCcchh
Q 031912 106 RQRGGVLVHCFAGRSRRC 123 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~ 123 (150)
..+.+|+|+|..| .+|.
T Consensus 47 ~~~~~vVv~c~~g-~~a~ 63 (145)
T cd01535 47 PAAERYVLTCGSS-LLAR 63 (145)
T ss_pred CCCCCEEEEeCCC-hHHH
Confidence 3567999999986 3443
No 173
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=27.44 E-value=50 Score=24.72 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=9.3
Q ss_pred HHHHHHhCCCcEEEEcCCCC
Q 031912 100 FIDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 100 fI~~~~~~~~~VLVHC~~G~ 119 (150)
.++-+.+-+.+|.|||....
T Consensus 116 ql~lA~~~~~pv~iH~r~a~ 135 (255)
T PF01026_consen 116 QLELAKELNLPVSIHCRKAH 135 (255)
T ss_dssp HHHHHHHHTCEEEEEEESHH
T ss_pred HHHHHHHhCCcEEEecCCcH
Confidence 33334344555555555443
No 174
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=27.36 E-value=1.9e+02 Score=25.22 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
-.+...+..+.|.+.+.+|++|||=|.+ +||+--++
T Consensus 384 r~~~e~~l~~~I~~tl~~gG~VLIP~fa-vGR~QEll 419 (630)
T TIGR03675 384 REEAEKELIKVVNETIKRGGKVLIPVFA-VGRAQEVM 419 (630)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEech-hHHHHHHH
Confidence 3344667788889999999999999977 67776555
No 175
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=27.35 E-value=1.2e+02 Score=26.07 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=28.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Q 031912 84 DKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 84 D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~ 119 (150)
+.+++.....++++++.|.+++.++++|+|+-..-.
T Consensus 45 ~l~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~ 80 (575)
T PRK11070 45 GLLPWQQLSGIEKAVELLYNALREGTRIIVVGDFDA 80 (575)
T ss_pred hcCChHHhhCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 444455566699999999999999999999886533
No 176
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=27.34 E-value=60 Score=25.34 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCcch
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAGRSRR 122 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G~sRS 122 (150)
+..+.+.+..+...|-++.+||..+.+++
T Consensus 254 i~~a~~i~~~a~~~gi~~~~g~~~es~i~ 282 (321)
T PRK15129 254 LTEALALATEARAQGFALMLGCMLCTSRA 282 (321)
T ss_pred HHHHHHHHHHHHHcCCcEEEecchHHHHH
Confidence 44566667777778999999998544443
No 177
>PRK05434 phosphoglyceromutase; Provisional
Probab=27.17 E-value=1.4e+02 Score=25.21 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCC-CcEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 91 SQYFDECISFIDEAKRQR-GGVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~-~~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
..+++.....++.+.++| ++|+|||. .|..-++.-+ +.|+-
T Consensus 124 Hsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~--~~~i~ 166 (507)
T PRK05434 124 HSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSA--LGYLE 166 (507)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhH--HHHHH
Confidence 344555566666777788 59999994 6888788777 66654
No 178
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=26.99 E-value=1.2e+02 Score=25.96 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCC-CcEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 91 SQYFDECISFIDEAKRQR-GGVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~-~~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
..+++.....++.+.++| ++|+|||. .|+.-.+.-+ +.|+-
T Consensus 141 HSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~--~~yl~ 183 (558)
T PLN02538 141 HSRLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSS--VGFVE 183 (558)
T ss_pred ccHHHHHHHHHHHHHHcCCCeEEEEEEcCCCCCCcccH--HHHHH
Confidence 344555566666677788 59999995 6888777777 66764
No 179
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.82 E-value=60 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 99 SFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.+.+.+.++++|++. |.|.|..++
T Consensus 2 ~~~~~~l~~a~rI~~~---G~G~S~~~A 26 (154)
T TIGR00441 2 VLLADSFKAGGKVLIC---GNGGSACDA 26 (154)
T ss_pred hHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3455667788888876 777776655
No 180
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=26.50 E-value=79 Score=24.79 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEcCCC
Q 031912 94 FDECISFIDEAKRQRG-GVLVHCFAG 118 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~-~VLVHC~~G 118 (150)
..+.++.+.+....-. +|.|||..|
T Consensus 159 ~~d~~eIl~~~~~~~~~~vvvHsFtG 184 (296)
T KOG3020|consen 159 HEDLLEILKRFLPECHKKVVVHSFTG 184 (296)
T ss_pred hHHHHHHHHHhccccCCceEEEeccC
Confidence 3344444444444433 899999998
No 181
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=26.46 E-value=1.3e+02 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 88 TNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.+-...+..+++.|.+...+|.+|||-|..
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 345667899999999999999999999854
No 182
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.40 E-value=36 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=22.2
Q ss_pred cCCeEEcChhhcCCHHHHHhCCCceEEEcCCCCC
Q 031912 35 EQGLFLGSIGAASNKDALKSRNITHILTVANALA 68 (150)
Q Consensus 35 ~~~LylG~~~~~~~~~~l~~~gI~~Vvnl~~~~~ 68 (150)
.+++.+..... .+.+.+...||+.|+.|.....
T Consensus 4 D~HiH~d~r~~-eDlekMa~sGI~~Vit~AhdP~ 36 (254)
T COG1099 4 DSHIHLDVRGF-EDLEKMALSGIREVITLAHDPY 36 (254)
T ss_pred ccccccccccH-HHHHHHHHhChhhhhhcccCCC
Confidence 34455544332 4567778899999999987654
No 183
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.32 E-value=91 Score=24.41 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=9.8
Q ss_pred HhCCCcEEEEcCC
Q 031912 105 KRQRGGVLVHCFA 117 (150)
Q Consensus 105 ~~~~~~VLVHC~~ 117 (150)
+..|..||.||.+
T Consensus 118 i~~g~~ILT~~~S 130 (310)
T PRK08535 118 IRDGDVIMTHCNS 130 (310)
T ss_pred cCCCCEEEEeCCc
Confidence 3457899999865
No 184
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=26.31 E-value=87 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCcch
Q 031912 87 DTNLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 87 ~~~l~~~~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS 122 (150)
.+.+.+...++..++++.+. .+++|||-|..|+-|+
T Consensus 149 GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~ 188 (228)
T PRK14119 149 SESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRA 188 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHH
Confidence 45677777888888877543 4678999999998775
No 185
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=26.15 E-value=45 Score=23.64 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 97 CISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 97 ~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+++.+......|.-||.|+.. .++.++-
T Consensus 141 i~~~~~~~~~~g~Iil~Hd~~--~~~~t~~ 168 (191)
T TIGR02764 141 IVDRVVKNTKPGDIILLHASD--SAKQTVK 168 (191)
T ss_pred HHHHHHhcCCCCCEEEEeCCC--CcHhHHH
Confidence 444445555678889999843 4444443
No 186
>PRK13462 acid phosphatase; Provisional
Probab=25.82 E-value=1.1e+02 Score=22.14 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCcch
Q 031912 87 DTNLSQYFDECISFIDEAKR--QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 87 ~~~l~~~~~~~~~fI~~~~~--~~~~VLVHC~~G~sRS 122 (150)
.+.+.+...++.++++.... .+++|+|-|..|+-|+
T Consensus 116 gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ 153 (203)
T PRK13462 116 GESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRA 153 (203)
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 35566667777778887665 3578999999988775
No 187
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=25.80 E-value=2.7e+02 Score=24.37 Aligned_cols=56 Identities=13% Similarity=-0.035 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEc-CCCCcchhhHHHHHHHHH----------HHHHHHHhhcCCC
Q 031912 89 NLSQYFDECISFIDEAKRQRGGVLVHC-FAGRSRRCHLFPHLGYFS----------MIILVYSNDNRPS 146 (150)
Q Consensus 89 ~l~~~~~~~~~fI~~~~~~~~~VLVHC-~~G~sRS~~v~~~~aylm----------~~a~~~v~~~Rp~ 146 (150)
.+.+.+.++..-|.+++-.|++|+|-= ..+=|=++.++ +-+.+ .+|-.+.-++||+
T Consensus 324 ~L~p~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvA--lE~AilplI~~~~~d~DAeyh~~KRrPs 390 (715)
T COG1107 324 ALKPDMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVA--LEKAILPLIEDVHPDEDAEYHLFKRRPS 390 (715)
T ss_pred HhhHHHHHHHHHHHHHHhcCCceEEecccCcccccchhh--HHHHHHHHHHHhCCChhhhhHHhhcCcc
Confidence 344567788888999999999999954 33444455555 44433 2466666667875
No 188
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=25.62 E-value=78 Score=18.23 Aligned_cols=17 Identities=18% Similarity=0.045 Sum_probs=12.1
Q ss_pred CCCcchhhHHHHHHHHH
Q 031912 117 AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 117 ~G~sRS~~v~~~~aylm 133 (150)
.|++.|+++++++++.+
T Consensus 12 ~GLgSSaa~~~a~~~a~ 28 (67)
T PF00288_consen 12 SGLGSSAALAVALAAAL 28 (67)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHH
Confidence 69999999885544444
No 189
>KOG4542 consensus Predicted membrane protein [Function unknown]
Probab=25.57 E-value=29 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=16.5
Q ss_pred eeccCCeEEcChhhcCCHHHHHhCC
Q 031912 32 FEIEQGLFLGSIGAASNKDALKSRN 56 (150)
Q Consensus 32 ~~I~~~LylG~~~~~~~~~~l~~~g 56 (150)
+-+.|+||+|+.-...-...|.++.
T Consensus 61 ~~vip~LyvG~lIskn~A~~LEENd 85 (96)
T KOG4542|consen 61 SIVIPFLYVGTLISKNFAALLEEND 85 (96)
T ss_pred eeecchhhhhhhhhhhHHHhhhhcc
Confidence 4578899999876654444555443
No 190
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=1.2e+02 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAG 118 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G 118 (150)
-+.|++.|.+...+.++|+.|=..|
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGG 34 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGG 34 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCC
Confidence 3568889999999999999995444
No 191
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.45 E-value=1.5e+02 Score=22.40 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+.+.++++.+.+.+.+|+++++ | |.|-|+.++
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la 64 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLG 64 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHH
Confidence 3467777777778888877554 4 444555555
No 192
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=25.32 E-value=1.7e+02 Score=21.32 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 99 SFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
+++.+...++++|+|-|..|.+=.=.++
T Consensus 36 ~~i~~~~~~~~~v~vl~G~GNNGGDGlv 63 (205)
T TIGR00197 36 QAVLQAFPLAGHVIIFCGPGNNGGDGFV 63 (205)
T ss_pred HHHHHHcCCCCeEEEEECCCCCccHHHH
Confidence 3443333356799999999888666666
No 193
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=25.27 E-value=73 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=9.3
Q ss_pred CCCcchhhHHH
Q 031912 117 AGRSRRCHLFP 127 (150)
Q Consensus 117 ~G~sRS~~v~~ 127 (150)
=|.|||++-+.
T Consensus 165 PG~SRSGaTI~ 175 (270)
T COG1968 165 PGTSRSGATIS 175 (270)
T ss_pred CCCCccHHHHH
Confidence 49999999884
No 194
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=25.22 E-value=1.3e+02 Score=21.58 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 92 QYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
..|+++.+.+.+++-..|+|+||+..
T Consensus 22 ~~iedaARlLAQA~vgeG~IYi~G~~ 47 (172)
T PF10740_consen 22 ESIEDAARLLAQAIVGEGTIYIYGFG 47 (172)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEE-G
T ss_pred hhHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45899999999999888899999754
No 195
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.19 E-value=38 Score=21.45 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.4
Q ss_pred CCCeeccCCeEEcChhhc
Q 031912 29 RVPFEIEQGLFLGSIGAA 46 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~ 46 (150)
.+..||.+++|+|+....
T Consensus 19 ~wllEv~~GVyVg~~s~r 36 (87)
T TIGR01873 19 LWLLEPRAGVYVGGVSAS 36 (87)
T ss_pred hheeecCCCcEEcCCCHH
Confidence 356799999999977654
No 196
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=25.17 E-value=1.8e+02 Score=18.32 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 92 QYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
..+..+.+++.+....++++||.|..
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~ 37 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPS 37 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCc
Confidence 34666777777766577899999866
No 197
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=25.17 E-value=66 Score=25.16 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.1
Q ss_pred HhCCCcEEEEcCCCC
Q 031912 105 KRQRGGVLVHCFAGR 119 (150)
Q Consensus 105 ~~~~~~VLVHC~~G~ 119 (150)
+..+++|+++|..|+
T Consensus 266 i~~~~~iv~yC~sG~ 280 (320)
T PLN02723 266 ISLDSPIVASCGTGV 280 (320)
T ss_pred CCCCCCEEEECCcHH
Confidence 346789999998875
No 198
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=24.67 E-value=63 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=19.7
Q ss_pred HHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 100 FIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 100 fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
|-.+.+..+++|.+-|..|++-+...+
T Consensus 228 f~~~~l~~~~p~~~sC~~Gisa~~i~~ 254 (286)
T KOG1529|consen 228 FAQKGLKLSKPVIVSCGTGISASIIAL 254 (286)
T ss_pred HHhcCcccCCCEEEeeccchhHHHHHH
Confidence 334555668999999999998664444
No 199
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=24.44 E-value=2e+02 Score=21.93 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCHHHHHhCCCceEEEcCCCC------CCC------------------CCCC-----ceEEEEeeecCCCCCHHHHHHHH
Q 031912 47 SNKDALKSRNITHILTVANAL------APA------------------HPND-----FVYKVIGVADKEDTNLSQYFDEC 97 (150)
Q Consensus 47 ~~~~~l~~~gI~~Vvnl~~~~------~~~------------------~~~~-----~~~~~ip~~D~~~~~l~~~~~~~ 97 (150)
.|.-.|++.|+++||..+.-. +|. |.++ --..|+|+.+..++.+.+.+.++
T Consensus 76 ANiwALk~~gc~~ii~~tAcGSLre~I~Pgd~v~p~q~IDrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~ 155 (283)
T KOG3985|consen 76 ANIWALKSLGCTAIISFTACGSLREEIKPGDFVLPDQIIDRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILIST 155 (283)
T ss_pred HhHHHHHhCCCcEEEEeeccccccccCCCccEecchhhhhhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHH
Confidence 356789999999999765321 111 1111 34577777766666666665555
Q ss_pred HHHHHHHHhCCCcEEEEcCCCC
Q 031912 98 ISFIDEAKRQRGGVLVHCFAGR 119 (150)
Q Consensus 98 ~~fI~~~~~~~~~VLVHC~~G~ 119 (150)
.+-+..- .+..--|-|.-|=
T Consensus 156 a~~l~~~--~hd~~tvVciEGP 175 (283)
T KOG3985|consen 156 AKELTNP--HHDDGTVVCIEGP 175 (283)
T ss_pred HHHhcCC--cCCceeEEEeeCC
Confidence 5443322 3446677787773
No 200
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=24.18 E-value=1.1e+02 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHH-h---CCCcEEEEcCCCCcch
Q 031912 88 TNLSQYFDECISFIDEAK-R---QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~-~---~~~~VLVHC~~G~sRS 122 (150)
+++.+..+++..|+++.+ . .+++|||-|..|+-|+
T Consensus 150 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ 188 (230)
T PRK14117 150 ENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRA 188 (230)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHH
Confidence 467777888888888764 2 3578999999998775
No 201
>PF08974 DUF1877: Domain of unknown function (DUF1877); InterPro: IPR015068 This entry represents a family of hypothetical proteins.; PDB: 1RYL_B.
Probab=24.09 E-value=1.5e+02 Score=20.82 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEE
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVH 114 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVH 114 (150)
+..+|....+|..++.++|..|++.
T Consensus 142 l~~~f~~L~~Fy~~AA~~~~~Vl~~ 166 (167)
T PF08974_consen 142 LWDYFEELKEFYQKAAENGDAVLFY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 5567999999999999999999874
No 202
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=23.93 E-value=1.1e+02 Score=23.83 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=9.9
Q ss_pred HhCCCcEEEEcCC
Q 031912 105 KRQRGGVLVHCFA 117 (150)
Q Consensus 105 ~~~~~~VLVHC~~ 117 (150)
+..|..||.||.+
T Consensus 113 i~~g~~ILT~~~S 125 (301)
T TIGR00511 113 IRDGDVVMTHCNS 125 (301)
T ss_pred cCCCCEEEEECCc
Confidence 4467889999865
No 203
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=23.50 E-value=1.3e+02 Score=22.77 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.0
Q ss_pred ceEEEEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 75 FVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 75 ~~~~~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
...+++|+.......+.++++++++.|...+.+|+.|-+-|-.
T Consensus 57 ~~~l~fPm~~~~~e~~~~~~~e~a~~va~~l~~G~~VAf~~lG 99 (234)
T COG2243 57 IVELHFPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLG 99 (234)
T ss_pred eeEEEeccCCchHHHHHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 3556777664434556777999999999999999888887743
No 204
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.42 E-value=1.3e+02 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCc--EEEEcCCCCcch
Q 031912 94 FDECISFIDEAKRQRGG--VLVHCFAGRSRR 122 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~--VLVHC~~G~sRS 122 (150)
++++++++. +.|.+ +|.||..+.--.
T Consensus 162 i~~av~~~r---~~g~~~i~LLhC~s~YPap 189 (347)
T COG2089 162 IEEAVAILR---ENGNPDIALLHCTSAYPAP 189 (347)
T ss_pred HHHHHHHHH---hcCCCCeEEEEecCCCCCC
Confidence 555655544 45555 999999887644
No 205
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=23.34 E-value=1.2e+02 Score=23.62 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 87 DTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 87 ~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
..|+...+..+-+.++.++..++++||+|..
T Consensus 194 G~D~~av~~a~~~A~~~~R~g~gP~lie~~t 224 (300)
T PF00676_consen 194 GNDVEAVYEAAKEAVEYARAGKGPVLIEAVT 224 (300)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred CEeHHHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 3455665555556677777778999999963
No 206
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=23.30 E-value=1.8e+02 Score=19.48 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCcchhhHH
Q 031912 107 QRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 107 ~~~~VLVHC~~G~sRS~~v~ 126 (150)
+|+.++|....|.|.|-+..
T Consensus 13 ~~~~~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYI 32 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHH
Confidence 67889999999999997776
No 207
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=23.15 E-value=1.2e+02 Score=25.59 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=25.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 84 DKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 84 D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
+.+++...+.++++++.|.+++.++++++|.+..
T Consensus 30 ~l~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~ 63 (539)
T TIGR00644 30 DLPDPFLLKDMEKAVERIIEAIENNEKILIFGDY 63 (539)
T ss_pred hcCChhhcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3334444455888999999999999999998864
No 208
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=23.13 E-value=79 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=16.9
Q ss_pred HHHhCCCcEEEEcCCCCcchhhH
Q 031912 103 EAKRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 103 ~~~~~~~~VLVHC~~G~sRS~~v 125 (150)
+.+.+.++|+|.+.+|+|.++-+
T Consensus 6 ~~l~~a~~ivv~tGAGiS~~SGI 28 (244)
T PRK14138 6 ELLNESRLTVTLTGAGISTPSGI 28 (244)
T ss_pred HHHHhCCCEEEEECcccchhhCC
Confidence 33445678999999999976543
No 209
>PF15192 TMEM213: TMEM213 family
Probab=23.01 E-value=1.8e+02 Score=17.84 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.5
Q ss_pred EcCCCCcchhhHHHHHHHHH------HHHHHHHhhcCCC
Q 031912 114 HCFAGRSRRCHLFPHLGYFS------MIILVYSNDNRPS 146 (150)
Q Consensus 114 HC~~G~sRS~~v~~~~aylm------~~a~~~v~~~Rp~ 146 (150)
.|.+|+.-=+=++++++|.+ --....+++.+|.
T Consensus 37 CC~~gvDeyGWIAAAVGWSLwFLTLILLCvdKlmKLtPd 75 (82)
T PF15192_consen 37 CCHAGVDEYGWIAAAVGWSLWFLTLILLCVDKLMKLTPD 75 (82)
T ss_pred HhccCCchhhHHHHHHhHHHHHHHHHHHHHHHHhccCCC
Confidence 68999998888888877754 2255566666664
No 210
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=22.96 E-value=75 Score=22.67 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCcEEEEcC--CCCcchhhHHHHHHHHHHHHHHHHhh-cCCCCC
Q 031912 99 SFIDEAKRQRGGVLVHCF--AGRSRRCHLFPHLGYFSMIILVYSND-NRPSES 148 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~--~G~sRS~~v~~~~aylm~~a~~~v~~-~Rp~is 148 (150)
+.+...+.++ +|+||=- ..++|++++. +-||..-|-.+.++ +|-+||
T Consensus 18 rlvke~l~E~-~vsisKeA~~Ai~raAtVF--v~~Lts~s~e~A~~q~rKt~s 67 (172)
T KOG0870|consen 18 RLVKEVLPES-NVSISKEARLAIARAATVF--VIFLTSVSNEIAKDQKRKTIS 67 (172)
T ss_pred HHHHHhCccc-cccccHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCccc
Confidence 3455555555 7888864 4788999999 78888666666655 444444
No 211
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.94 E-value=1.1e+02 Score=20.71 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=17.9
Q ss_pred eEEcChhh------cCCHHHHHhCCCceEEEc
Q 031912 38 LFLGSIGA------ASNKDALKSRNITHILTV 63 (150)
Q Consensus 38 LylG~~~~------~~~~~~l~~~gI~~Vvnl 63 (150)
+++|+... ..+.+.|+++|++.|..=
T Consensus 84 vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 84 LYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAP 115 (128)
T ss_pred EEEECCCCCChhhhHHHHHHHHHcCCCEEECc
Confidence 77877632 233466999999988753
No 212
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=22.83 E-value=2.5e+02 Score=18.89 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhC---CCcEEEEcCCCCcchhhHHH
Q 031912 92 QYFDECISFIDEAKRQ---RGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~---~~~VLVHC~~G~sRS~~v~~ 127 (150)
++=.++++-+.+.+.. ++.++++...|.|-|.+++.
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3445566666665554 48999999999998877764
No 213
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=22.78 E-value=1.5e+02 Score=26.95 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 88 TNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.+-...+..+++.|.+...+|.+|||-|..
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~S 453 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVS 453 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 345566888999999989999999999953
No 214
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.69 E-value=88 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCc
Q 031912 89 NLSQYFDECISFIDEAKRQRGGVLVHCFAGRS 120 (150)
Q Consensus 89 ~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~s 120 (150)
++.+ +..|+++|.+.- ...-+|.||..+..
T Consensus 145 t~~E-i~~Av~~i~~~g-~~~i~LlhC~s~YP 174 (327)
T TIGR03586 145 TLEE-IQEAVEACREAG-CKDLVLLKCTSSYP 174 (327)
T ss_pred CHHH-HHHHHHHHHHCC-CCcEEEEecCCCCC
Confidence 4443 777888775321 12358889987764
No 215
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.51 E-value=47 Score=21.53 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=14.4
Q ss_pred CCCeeccCCeEEcChhhc
Q 031912 29 RVPFEIEQGLFLGSIGAA 46 (150)
Q Consensus 29 ~~p~~I~~~LylG~~~~~ 46 (150)
.+..||.+++|+|+....
T Consensus 21 ~wllEv~~GVyVg~~S~r 38 (97)
T PRK11558 21 VWLLEVRAGVYVGDVSRR 38 (97)
T ss_pred hheEecCCCcEEcCCCHH
Confidence 357899999999986654
No 216
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=22.45 E-value=1.9e+02 Score=21.12 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCc
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAGRS 120 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G~s 120 (150)
+.++.+.+..+...|-++.+||..|-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 455666677777889999999976543
No 217
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=22.02 E-value=1.5e+02 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
...+..|+.||.....+|++||+-+..
T Consensus 42 ~~~L~~A~~~i~~~~~~gg~iLfVgTk 68 (326)
T PRK12311 42 VPLLHRALQAVSDTVAKGGRVLFVGTK 68 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 345999999999999999999998754
No 218
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=21.99 E-value=1.7e+02 Score=20.82 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCC--cEEEEcCCCCcc
Q 031912 87 DTNLSQYFDECISFIDEAKRQRG--GVLVHCFAGRSR 121 (150)
Q Consensus 87 ~~~l~~~~~~~~~fI~~~~~~~~--~VLVHC~~G~sR 121 (150)
.+...+....+..++.+...... +|+|-|+.|.-|
T Consensus 122 gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir 158 (208)
T COG0406 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR 158 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH
Confidence 45667777888888888877543 599999999887
No 219
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=21.98 E-value=2.9e+02 Score=20.58 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHHHHHHH
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~~aylm 133 (150)
.+-+.+.+.+.....+..|--|-+|--++.++. ++|.+
T Consensus 103 a~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~--~g~A~ 140 (209)
T TIGR02584 103 ANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFY--LGYAL 140 (209)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHH--HHHHH
Confidence 444445555554456677777788866666655 55555
No 220
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=21.94 E-value=2e+02 Score=25.79 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEc
Q 031912 88 TNLSQYFDECISFIDEAKRQRGGVLVHC 115 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~~~~~VLVHC 115 (150)
.+....+..+++.|.+..++|.+|||=|
T Consensus 407 ~t~~~k~~Aii~ei~~~~~~GrPVLVgt 434 (764)
T PRK12326 407 ATAAEKNDAIVEHIAEVHETGQPVLVGT 434 (764)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4566779999999999999999999987
No 221
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.74 E-value=1.4e+02 Score=20.90 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHHH--hCCCcEEEEcCCCCcchhhHHH
Q 031912 96 ECISFIDEAK--RQRGGVLVHCFAGRSRRCHLFP 127 (150)
Q Consensus 96 ~~~~fI~~~~--~~~~~VLVHC~~G~sRS~~v~~ 127 (150)
.+.++|.+.. ..+++|+|-|..|.+=.=.+++
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~ 44 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVA 44 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHH
Confidence 4556777777 6788999999888776666663
No 222
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=21.62 E-value=1.6e+02 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
...+..|+.||.....+|++||+.+..
T Consensus 45 ~~~L~~A~~~i~~~~~~~g~iLfV~tk 71 (225)
T TIGR01011 45 LQLLKEAYNFVKDVAANGGKILFVGTK 71 (225)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455999999999999999999988653
No 223
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.33 E-value=2.6e+02 Score=24.52 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHHHH-HHHHH
Q 031912 88 TNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLFPH-LGYFS 133 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~~~-~aylm 133 (150)
+.+.+.=.+..+.+.+++.+|+..++.--.|.|.|.++.+. ++|.-
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 33344455667777888889999999999999999665543 66654
No 224
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.29 E-value=1.7e+02 Score=22.15 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=39.3
Q ss_pred cChhhcCCHHHHHhCCCceEEEcCCCCCCCC--------CCCceEEEEeeecCCCC-CHHHHHHHHHHHHHHHH
Q 031912 41 GSIGAASNKDALKSRNITHILTVANALAPAH--------PNDFVYKVIGVADKEDT-NLSQYFDECISFIDEAK 105 (150)
Q Consensus 41 G~~~~~~~~~~l~~~gI~~Vvnl~~~~~~~~--------~~~~~~~~ip~~D~~~~-~l~~~~~~~~~fI~~~~ 105 (150)
|++....+...+++++|+.+|.=..... .+ ..++...-|.=...+.. .....++++.+++.+.+
T Consensus 175 gPfs~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 175 GPFSLELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHLL 247 (248)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHhh
Confidence 6777777888999999999997665443 21 33455444433332222 23344777777776643
No 225
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=21.14 E-value=1.9e+02 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.+.++.++.||.+.+..|.+|++-+..
T Consensus 30 ~e~~~~~~~Fi~~GL~~ge~~l~v~~~ 56 (191)
T PF14417_consen 30 EELLEVLVPFIREGLARGERCLYVAPD 56 (191)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 566888999999999999999998864
No 226
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=21.13 E-value=3.3e+02 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhC-CCcEEEEcC-CCCcchhhHHHHHHHHH
Q 031912 93 YFDECISFIDEAKRQ-RGGVLVHCF-AGRSRRCHLFPHLGYFS 133 (150)
Q Consensus 93 ~~~~~~~fI~~~~~~-~~~VLVHC~-~G~sRS~~v~~~~aylm 133 (150)
+++.....+...... .+.+.|||. .|..-++-.. ++||-
T Consensus 139 hidhl~allka~~erg~~ei~vH~~tDGRDt~p~s~--vgfLe 179 (531)
T KOG4513|consen 139 HIDHLQALLKALAERGAKEIRVHILTDGRDTLPGSS--VGFLE 179 (531)
T ss_pred hHHHHHHHHHHHHhcCCceEEEEEecCCccCCCCcc--hhhHH
Confidence 344444444444444 478999995 5777666666 67743
No 227
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=21.05 E-value=75 Score=17.72 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=18.4
Q ss_pred eEEcChhhcCCHHHHH----hCCCceEEEcCC
Q 031912 38 LFLGSIGAASNKDALK----SRNITHILTVAN 65 (150)
Q Consensus 38 LylG~~~~~~~~~~l~----~~gI~~Vvnl~~ 65 (150)
||||+.+...+.+.|+ +.|.-.-+.+..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc
Confidence 7999998877776655 455554444444
No 228
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.04 E-value=2.2e+02 Score=21.50 Aligned_cols=24 Identities=21% Similarity=-0.069 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 94 FDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 94 ~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
.+-...+|+-+.+.+.+|.|||..
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecC
Confidence 333444566666678888888875
No 229
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=20.95 E-value=2.5e+02 Score=18.31 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHHhCCCceEEEcCCCCC---CCC----------CCCceEEEEeee
Q 031912 50 DALKSRNITHILTVANALA---PAH----------PNDFVYKVIGVA 83 (150)
Q Consensus 50 ~~l~~~gI~~Vvnl~~~~~---~~~----------~~~~~~~~ip~~ 83 (150)
+.|++.||+.||++..-.. +.| ..|+.|.+++-.
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 4688899999999865433 111 457888888753
No 230
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=20.94 E-value=2.2e+02 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEcC
Q 031912 89 NLSQYFDECISFIDEAKRQRGGVLVHCF 116 (150)
Q Consensus 89 ~l~~~~~~~~~fI~~~~~~~~~VLVHC~ 116 (150)
+-...+..+++.+.+...+|.+|||-|.
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~ 413 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTT 413 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445688888888888889999999995
No 231
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=20.89 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.4
Q ss_pred EEeeecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 031912 79 VIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVH 114 (150)
Q Consensus 79 ~ip~~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVH 114 (150)
++|-.|.........|..+++.|......|.+|||=
T Consensus 400 R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvg 435 (822)
T COG0653 400 RLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVG 435 (822)
T ss_pred CCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEc
Confidence 334444444456677999999999999999999985
No 232
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.83 E-value=1.5e+02 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHHHHHhCCCcEEEEcC--CCCcchhhHH
Q 031912 100 FIDEAKRQRGGVLVHCF--AGRSRRCHLF 126 (150)
Q Consensus 100 fI~~~~~~~~~VLVHC~--~G~sRS~~v~ 126 (150)
.++...+.|+.|+||-. .|+++...-+
T Consensus 36 ~v~~~~~~gK~vfVHiDli~Gl~~D~~~i 64 (175)
T PF04309_consen 36 IVKRLKAAGKKVFVHIDLIEGLSRDEAGI 64 (175)
T ss_dssp HHHHHHHTT-EEEEECCGEETB-SSHHHH
T ss_pred HHHHHHHcCCEEEEEehhcCCCCCCHHHH
Confidence 34555678999999997 5998875443
No 233
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=20.71 E-value=1.6e+02 Score=24.59 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=32.0
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcC---CCCcchhhHH
Q 031912 83 ADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCF---AGRSRRCHLF 126 (150)
Q Consensus 83 ~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~---~G~sRS~~v~ 126 (150)
.+.+.+.....+..+++.+.++++++++|+|.-. .|++-++.++
T Consensus 11 ~~~~~~~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~ 57 (491)
T COG0608 11 SLLLDPFLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILA 57 (491)
T ss_pred hcCCChHHHhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHH
Confidence 3455566677799999999999999988888653 4777444333
No 234
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=20.70 E-value=1.3e+02 Score=21.39 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCC-----CcEEEEc
Q 031912 91 SQYFDECISFIDEAKRQR-----GGVLVHC 115 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~-----~~VLVHC 115 (150)
...+..|+++..+++..| +.|+|||
T Consensus 12 ~~~m~~a~eea~ka~d~~~~~pvg~vlV~~ 41 (169)
T KOG1018|consen 12 IAFMVEAVEEAKKALDEGDEVPVGAVLVHM 41 (169)
T ss_pred HHHHHHHHHHHHhhccCCCCCceEEEEEeC
Confidence 345888888888888877 7899998
No 235
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=20.61 E-value=1.8e+02 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 031912 91 SQYFDECISFIDEAKRQRGGVLVHCFA 117 (150)
Q Consensus 91 ~~~~~~~~~fI~~~~~~~~~VLVHC~~ 117 (150)
...+..|+.++.....+|+++|+-+..
T Consensus 39 ~~~L~~A~~~i~~i~~~~g~iLfV~t~ 65 (193)
T cd01425 39 LEKLRLALNFIANIAAKGGKILFVGTK 65 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 445999999999999999999998754
No 236
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=20.58 E-value=1.7e+02 Score=20.84 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHh-------CCCcEEEEcCCCCcch
Q 031912 88 TNLSQYFDECISFIDEAKR-------QRGGVLVHCFAGRSRR 122 (150)
Q Consensus 88 ~~l~~~~~~~~~fI~~~~~-------~~~~VLVHC~~G~sRS 122 (150)
+.+.+....+..++.+... .+++|||-|..|+-|+
T Consensus 117 Es~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ 158 (204)
T TIGR03848 117 ESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKS 158 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHH
Confidence 4455556667777766543 3467999998887765
No 237
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=20.50 E-value=52 Score=20.66 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=16.0
Q ss_pred eEEcChhhcCCHHHHHhCCCceEEEcCC
Q 031912 38 LFLGSIGAASNKDALKSRNITHILTVAN 65 (150)
Q Consensus 38 LylG~~~~~~~~~~l~~~gI~~Vvnl~~ 65 (150)
|++.+.....-...+.+.||+.|+|+++
T Consensus 68 i~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 68 ITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp EES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred EEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4443333323345566799999999875
No 238
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=20.12 E-value=2e+02 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCcEEEEcCCC
Q 031912 99 SFIDEAKRQRGGVLVHCFAG 118 (150)
Q Consensus 99 ~fI~~~~~~~~~VLVHC~~G 118 (150)
.+++.+.+.|.+|.+||..+
T Consensus 112 ~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 112 AQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHhCCCeEEEeeCc
Confidence 34555566788999999754
No 239
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=20.04 E-value=2.9e+02 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhHH
Q 031912 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 90 l~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v~ 126 (150)
-.+.=.+..+.|.+.+..||+|||=- .++|||--+.
T Consensus 390 R~eaE~~L~~vi~~t~~rGGKvLIP~-fAVGR~QEvM 425 (637)
T COG1782 390 REEAEKELIKVINDTLKRGGKVLIPV-FAVGRSQEVM 425 (637)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEe-eeccccceeh
Confidence 33445566677888889999999995 4456654443
No 240
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.03 E-value=1.4e+02 Score=23.86 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=14.9
Q ss_pred hCCCcEEEEcCCCCcchhhHH
Q 031912 106 RQRGGVLVHCFAGRSRRCHLF 126 (150)
Q Consensus 106 ~~~~~VLVHC~~G~sRS~~v~ 126 (150)
.++++|+|+|..| .||...+
T Consensus 55 ~~~~~IvvyC~~G-~rs~~aa 74 (376)
T PRK08762 55 DRDREIVLICASG-TRSAHAA 74 (376)
T ss_pred CCCCeEEEEcCCC-cHHHHHH
Confidence 4678999999988 4665433
No 241
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.00 E-value=2.5e+02 Score=21.84 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCcchhhH
Q 031912 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRRCHL 125 (150)
Q Consensus 92 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v 125 (150)
+.+.++++.+.+.+.+|++|++ |.+| -|+.+
T Consensus 42 ~~I~~a~~~~~~~l~~ggrl~~-~GaG--~Sg~l 72 (296)
T PRK12570 42 PQIAQAVDKIVAAFKKGGRLIY-MGAG--TSGRL 72 (296)
T ss_pred HHHHHHHHHHHHHHHcCCeEEE-ECCc--hhHHH
Confidence 3466677777777888877554 4444 44544
Done!