Your job contains 1 sequence.
>031915
MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ
PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALA
RLSAVNRSLKVSKSGVKKRNRQATKVPVRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031915
(150 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052010 - symbol:AT2G19730 species:3702 "Arabi... 566 7.8e-55 1
TAIR|locus:2118289 - symbol:AT4G29410 species:3702 "Arabi... 564 1.3e-54 1
UNIPROTKB|E2R0A6 - symbol:RPL28 "Uncharacterized protein"... 205 1.4e-16 1
UNIPROTKB|P46779 - symbol:RPL28 "60S ribosomal protein L2... 205 1.4e-16 1
MGI|MGI:101839 - symbol:Rpl28 "ribosomal protein L28" spe... 204 1.8e-16 1
UNIPROTKB|Q642E2 - symbol:Rpl28 "Ribosomal protein L28" s... 204 1.8e-16 1
UNIPROTKB|Q3T0L7 - symbol:RPL28 "60S ribosomal protein L2... 203 2.3e-16 1
RGD|2318912 - symbol:LOC100362069 "ribosomal protein L28-... 200 4.7e-16 1
ASPGD|ASPL0000004497 - symbol:AN6500 species:162425 "Emer... 198 7.7e-16 1
RGD|621193 - symbol:Rpl28 "ribosomal protein L28" species... 196 1.3e-15 1
ZFIN|ZDB-GENE-040930-10 - symbol:rpl28 "ribosomal protein... 195 1.6e-15 1
FB|FBgn0035422 - symbol:RpL28 "Ribosomal protein L28" spe... 189 6.9e-15 1
POMBASE|SPAC1687.06c - symbol:rpl44 "60S ribosomal protei... 185 1.8e-14 1
DICTYBASE|DDB_G0282379 - symbol:rpl28 "60S ribosomal prot... 176 1.6e-13 1
RGD|1565183 - symbol:RGD1565183 "similar to ribosomal pro... 175 2.1e-13 1
RGD|1585117 - symbol:LOC690096 "similar to ribosomal prot... 173 3.4e-13 1
UNIPROTKB|H0YKD8 - symbol:RPL28 "60S ribosomal protein L2... 171 5.6e-13 1
WB|WBGene00004442 - symbol:rpl-28 species:6239 "Caenorhab... 148 1.5e-10 1
UNIPROTKB|H0YLP6 - symbol:RPL28 "60S ribosomal protein L2... 114 6.1e-07 1
UNIPROTKB|H0YMF4 - symbol:RPL28 "60S ribosomal protein L2... 114 6.1e-07 1
UNIPROTKB|D4A8B6 - symbol:D4A8B6 "Uncharacterized protein... 114 6.1e-07 1
UNIPROTKB|C9JB50 - symbol:RPL28 "Ribosomal protein L28, i... 112 1.0e-06 1
UNIPROTKB|G5E9L2 - symbol:RPL28 "Ribosomal protein L28, i... 112 1.0e-06 1
UNIPROTKB|I3LSZ6 - symbol:RPL28 "Uncharacterized protein"... 88 0.00063 1
>TAIR|locus:2052010 [details] [associations]
symbol:AT2G19730 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR002672 EnsemblPlants:AT2G19730.2 GO:GO:0005886
GO:GO:0009506 GO:GO:0005618 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003735 EMBL:AC005169
GO:GO:0022625 EMBL:AY050769 EMBL:AY079378 IPI:IPI00516217
PIR:D84580 RefSeq:NP_001031374.1 RefSeq:NP_001077920.1
RefSeq:NP_179563.1 UniGene:At.12891 ProteinModelPortal:O82204
SMR:O82204 STRING:O82204 PaxDb:O82204 PRIDE:O82204 ProMEX:O82204
EnsemblPlants:AT2G19730.1 EnsemblPlants:AT2G19730.3 GeneID:816492
KEGG:ath:AT2G19730 TAIR:At2g19730 eggNOG:NOG148062
HOGENOM:HOG000200513 InParanoid:O82204 KO:K02903 OMA:KPFSTEP
PhylomeDB:O82204 ProtClustDB:CLSN2683192 Genevestigator:O82204
GermOnline:AT2G19730 PANTHER:PTHR10544 Uniprot:O82204
Length = 143
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 108/143 (75%), Positives = 126/143 (88%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALA 120
KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 121 RLSAVNRSLKVSKSGVKKRNRQA 143
RLSA+++ L+V+KSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143
>TAIR|locus:2118289 [details] [associations]
symbol:AT4G29410 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR002672
EnsemblPlants:AT4G29410.1 GO:GO:0005886 GO:GO:0009506 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161574 GO:GO:0006412 GO:GO:0003735
EMBL:AL096692 GO:GO:0022625 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 ProtClustDB:CLSN2683192 PANTHER:PTHR10544 EMBL:AY072328
EMBL:BT000047 EMBL:AY088304 IPI:IPI00539771 PIR:B85343
RefSeq:NP_001078470.1 RefSeq:NP_194670.1 UniGene:At.19931
ProteinModelPortal:Q9M0E2 SMR:Q9M0E2 STRING:Q9M0E2 PaxDb:Q9M0E2
PRIDE:Q9M0E2 EnsemblPlants:AT4G29410.2 GeneID:829062
KEGG:ath:AT4G29410 TAIR:At4g29410 InParanoid:Q9M0E2 OMA:QNTPAKL
PhylomeDB:Q9M0E2 Genevestigator:Q9M0E2 GermOnline:AT4G29410
Uniprot:Q9M0E2
Length = 143
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 107/143 (74%), Positives = 124/143 (86%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALA 120
GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61 AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120
Query: 121 RLSAVNRSLKVSKSGVKKRNRQA 143
RLSA+++ L+V+KSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143
>UNIPROTKB|E2R0A6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 GeneTree:ENSGT00390000008732
EMBL:AAEX03000731 RefSeq:XP_003432751.1 RefSeq:XP_533581.3
Ensembl:ENSCAFT00000004065 GeneID:476378 KEGG:cfa:476378
NextBio:20852046 Uniprot:E2R0A6
Length = 137
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ R
Sbjct: 60 VVVVLKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVM--VKRKRARPTK 135
>UNIPROTKB|P46779 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR002672 Reactome:REACT_116125
GO:GO:0000184 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
EMBL:CH471135 EMBL:AC020922 GO:GO:0006415 GO:GO:0006414
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:U14969 EMBL:CR457024 EMBL:AK311760 EMBL:AK293736
EMBL:BC010173 EMBL:BC010182 EMBL:BC011582 IPI:IPI00182533
IPI:IPI00910727 PIR:S55915 RefSeq:NP_000982.2 RefSeq:NP_001129606.1
RefSeq:NP_001129607.1 UniGene:Hs.652114 ProteinModelPortal:P46779
SMR:P46779 IntAct:P46779 MINT:MINT-5004261 STRING:P46779
PhosphoSite:P46779 DMDM:22002069 PaxDb:P46779 PeptideAtlas:P46779
PRIDE:P46779 DNASU:6158 Ensembl:ENST00000344063
Ensembl:ENST00000559463 Ensembl:ENST00000560583 GeneID:6158
KEGG:hsa:6158 UCSC:uc002qkv.3 GeneCards:GC19P055897 HGNC:HGNC:10330
HPA:HPA050459 MIM:603638 neXtProt:NX_P46779 PharmGKB:PA34710
InParanoid:P46779 PhylomeDB:P46779 GenomeRNAi:6158 NextBio:23915
PMAP-CutDB:P46779 ArrayExpress:P46779 Bgee:P46779 CleanEx:HS_RPL28
Genevestigator:P46779 GermOnline:ENSG00000108107 Uniprot:P46779
Length = 137
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ R
Sbjct: 60 VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVM--VKRKRTRPTK 135
>MGI|MGI:101839 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR002672
MGI:MGI:101839 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:X74856 EMBL:AK018714 EMBL:AK076133 EMBL:BC024395
IPI:IPI00222547 PIR:I48738 RefSeq:NP_033107.1 UniGene:Mm.379002
ProteinModelPortal:P41105 SMR:P41105 DIP:DIP-59974N IntAct:P41105
STRING:P41105 PhosphoSite:P41105 PaxDb:P41105 PRIDE:P41105
Ensembl:ENSMUST00000032597 Ensembl:ENSMUST00000078432 GeneID:19943
KEGG:mmu:19943 InParanoid:P41105 NextBio:297461 Bgee:P41105
CleanEx:MM_RPL28 Genevestigator:P41105
GermOnline:ENSMUSG00000030432 GermOnline:ENSMUSG00000058603
Uniprot:P41105
Length = 137
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ R
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVV--VKRKRTRPTK 135
>UNIPROTKB|Q642E2 [details] [associations]
symbol:Rpl28 "Ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 RGD:621193
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH474075
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 HOVERGEN:HBG000701 UniGene:Rn.36614
EMBL:BC081800 IPI:IPI00471679 RefSeq:NP_073188.2 SMR:Q642E2
STRING:Q642E2 Ensembl:ENSRNOT00000058943 GeneID:64638
KEGG:rno:64638 InParanoid:Q642E2 NextBio:613620
Genevestigator:Q642E2 Uniprot:Q642E2
Length = 137
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ R
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVV--VKRKRTRPTK 135
>UNIPROTKB|Q3T0L7 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 EMBL:BC102344
IPI:IPI00707537 RefSeq:NP_001030580.1 UniGene:Bt.28844
STRING:Q3T0L7 PRIDE:Q3T0L7 Ensembl:ENSBTAT00000031754 GeneID:618702
KEGG:bta:618702 CTD:6158 GeneTree:ENSGT00390000008732
HOVERGEN:HBG000701 InParanoid:Q3T0L7 OrthoDB:EOG4W9J5C
NextBio:20901322 Uniprot:Q3T0L7
Length = 137
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ R
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVM--VKRKPSRPTK 135
>RGD|2318912 [details] [associations]
symbol:LOC100362069 "ribosomal protein L28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
RGD:2318912 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10544 OMA:QNTPAKL GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00780624 RefSeq:XP_002725599.1
RefSeq:XP_002728752.1 Ensembl:ENSRNOT00000057158 GeneID:100362069
KEGG:rno:100362069 UCSC:RGD:2318912 Uniprot:D3ZJD3
Length = 137
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 49/138 (35%), Positives = 76/138 (55%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKAGNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL AA+ R SA+ R
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLSMAAIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVV--VKRKRTRPTK 135
>ASPGD|ASPL0000004497 [details] [associations]
symbol:AN6500 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 GO:GO:0006412 GO:GO:0005840 EMBL:BN001301
GO:GO:0003735 HOGENOM:HOG000200513 OMA:KPFSTEP PANTHER:PTHR10544
EnsemblFungi:CADANIAT00007267 Uniprot:C8V0H7
Length = 157
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 50/148 (33%), Positives = 80/148 (54%)
Query: 2 ATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP 61
+ V L+W++ + N +LVK+ G V+FS++P N+ N +SFK++G +N K + +Q
Sbjct: 6 SNVSSDLVWQLTRNQNAYLVKRNTHGG--VQFSRDPLNVLNKHSFKYAGYSNTKAIGVQ- 62
Query: 62 GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP--RMAKAVVNQVADNYYRPDLKKAAL 119
++ VV T K +PA L T ++ K V ++ A N YR DL++ A+
Sbjct: 63 ATENGGVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKNGYRADLRQEAV 122
Query: 120 ARLSAVNRSLKVSKS--GVKKRNRQATK 145
+R+SA+ RS K K K R QA K
Sbjct: 123 SRVSAIRRSQKAKKETPARKPRGAQARK 150
>RGD|621193 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR002672 RGD:621193 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
PANTHER:PTHR10544 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C EMBL:X52619
IPI:IPI00555189 PIR:S13072 UniGene:Rn.36614 IntAct:P17702
STRING:P17702 PRIDE:P17702 UCSC:RGD:621193 InParanoid:P17702
ArrayExpress:P17702 Genevestigator:P17702
GermOnline:ENSRNOG00000017127 Uniprot:P17702
Length = 137
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 51/140 (36%), Positives = 80/140 (57%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ--PGGKD 65
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++ P GK
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKG 59
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125
+ VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+
Sbjct: 60 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 126 NRSLKVSKSGVKKRNRQATK 145
RS K VK++ + TK
Sbjct: 118 LRSQKPVV--VKRKRTRPTK 135
>ZFIN|ZDB-GENE-040930-10 [details] [associations]
symbol:rpl28 "ribosomal protein L28" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0009790 "embryo development" evidence=IMP] InterPro:IPR002672
ZFIN:ZDB-GENE-040930-10 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0003735 KO:K02903 PANTHER:PTHR10544 CTD:6158
HOVERGEN:HBG000701 EMBL:BC055584 EMBL:AY648842 IPI:IPI00486130
RefSeq:NP_957355.1 UniGene:Dr.76048 STRING:Q7SXI9 GeneID:394036
KEGG:dre:394036 InParanoid:Q7SXI9 NextBio:20814998 Uniprot:Q7SXI9
Length = 138
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 50/138 (36%), Positives = 75/138 (54%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +++ ++ FL+K+ N +S EPNNL N+F+ +GL +RKT+ I+P
Sbjct: 6 LQWMVIRNSSSFLIKR----NKQT-YSTEPNNLKARNAFRFNGLIHRKTIGIEPAADGKG 60
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ K Q KPA+ K T+ K +V N + N YR DL+ AAL R+SA+
Sbjct: 61 VVVVLKKRSGQRKPATSYGKITINKNSRATLASVRNIIRKNKYRRDLRMAALRRVSAILS 120
Query: 128 SLKVSKSGVKKRNRQATK 145
S K V+K+ +A K
Sbjct: 121 SQKPVV--VRKKRSRAPK 136
>FB|FBgn0035422 [details] [associations]
symbol:RpL28 "Ribosomal protein L28" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=IMP] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR002672 EMBL:AE014296 GO:GO:0051298 GO:GO:0022008
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 EMBL:AY071444 RefSeq:NP_001163336.1
RefSeq:NP_001163337.1 RefSeq:NP_647791.2 RefSeq:NP_728839.1
RefSeq:NP_728840.1 RefSeq:NP_728841.2 UniGene:Dm.14669
ProteinModelPortal:Q9VZS5 SMR:Q9VZS5 IntAct:Q9VZS5 MINT:MINT-786006
STRING:Q9VZS5 PaxDb:Q9VZS5 PRIDE:Q9VZS5 EnsemblMetazoa:FBtr0073095
EnsemblMetazoa:FBtr0073097 EnsemblMetazoa:FBtr0073098
EnsemblMetazoa:FBtr0302300 EnsemblMetazoa:FBtr0302301
EnsemblMetazoa:FBtr0306567 GeneID:38397 KEGG:dme:Dmel_CG12740
FlyBase:FBgn0035422 InParanoid:Q9VZS5 OrthoDB:EOG4PZGQ4
PhylomeDB:Q9VZS5 ChiTaRS:RPL28 GenomeRNAi:38397 NextBio:808415
GermOnline:CG12740 Uniprot:Q9VZS5
Length = 144
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ +
Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVV 56
Query: 61 PGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEF---PRMA-KAVVNQVADNYYRPDLKK 116
P K K +PA K+T+R +F PR + K + N + + YR DL +
Sbjct: 57 PAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQ 112
Query: 117 AALARLSAVNRSLKVSKSGVKKRNRQATKVP 147
AAL R SAV RS K + KK K P
Sbjct: 113 AALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143
>POMBASE|SPAC1687.06c [details] [associations]
symbol:rpl44 "60S ribosomal protein L28/L44
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR002672 PomBase:SPAC1687.06c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022625
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 EMBL:AB016007 PIR:T37749 PIR:T43380
RefSeq:NP_593124.1 IntAct:O14069 STRING:O14069
EnsemblFungi:SPAC1687.06c.1 GeneID:2542782 KEGG:spo:SPAC1687.06c
OrthoDB:EOG4ZGSP7 NextBio:20803826 Uniprot:O14069
Length = 134
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 49/137 (35%), Positives = 74/137 (54%)
Query: 3 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQ 60
+V LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q
Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 57
Query: 61 PGGKDLSVVLATAKTKKQN--KPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKA 117
VVL T KT +N KPA L K + R K++ ++ YR DL K
Sbjct: 58 -ANSPRGVVLIT-KTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKV 115
Query: 118 ALARLSAVNRSLKVSKS 134
++AR SA+ S + K+
Sbjct: 116 SVARASAILSSQRPKKT 132
>DICTYBASE|DDB_G0282379 [details] [associations]
symbol:rpl28 "60S ribosomal protein L28"
species:44689 "Dictyostelium discoideum" [GO:0005615 "extracellular
space" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002672
dictyBase:DDB_G0282379 GO:GO:0005615 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 KO:K02903 PANTHER:PTHR10544 EMBL:AY007804
RefSeq:XP_640178.1 STRING:Q9GS21 PRIDE:Q9GS21
EnsemblProtists:DDB0214936 GeneID:8623717 KEGG:ddi:DDB_G0282379
OMA:EPGNLRN Uniprot:Q9GS21
Length = 132
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 48/136 (35%), Positives = 68/136 (50%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDL 66
L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK
Sbjct: 5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK-- 57
Query: 67 SVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVN 126
VV+++ KK PA +T R V +A Y P+L+ AAL RL V
Sbjct: 58 -VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQY-APELRAAALGRLHRVQ 115
Query: 127 RSLKVSKSGVKKRNRQ 142
+L+ +K ++ ++
Sbjct: 116 SALRSAKKAAARKAKK 131
>RGD|1565183 [details] [associations]
symbol:RGD1565183 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1565183 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 OrthoDB:EOG4W9J5C IPI:IPI00215480
RefSeq:XP_001057767.1 RefSeq:XP_212890.1 PRIDE:D3ZG08
Ensembl:ENSRNOT00000049254 GeneID:293846 KEGG:rno:293846 CTD:293846
OMA:THAKRYS NextBio:637123 Uniprot:D3ZG08
Length = 137
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EP NL NSF ++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPKNLKARNSFGYNGLIHRKTVGVEPTADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV+ + Q KPA ++T+ K ++ + N Y PDL+ + R SA+ R
Sbjct: 60 VVVVMKRRSGQRKPAISYVRTTINKNARATLSSIRQMIRKNKYHPDLRMVTIRRASAILR 119
Query: 128 SLKVSKSGVKKRNRQATK 145
S K VK++ + TK
Sbjct: 120 SQKPVV--VKRKRTRPTK 135
>RGD|1585117 [details] [associations]
symbol:LOC690096 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1585117 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00958507 Ensembl:ENSRNOT00000012255
UCSC:RGD:1585117 Uniprot:D3ZEI0
Length = 145
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 50/149 (33%), Positives = 77/149 (51%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NS +++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSLRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADN-Y------YRPDLKKAALA 120
VV+ + Q KPA+ ++T+ K P ++ + N Y YRPDL+ AA+
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNAPATLSSIRQMIRKNKYRQKTNKYRPDLRMAAIH 119
Query: 121 RLSAVNRSLK--VSKSGVKKRNRQATKVP 147
SA+ +S K V K +K+ RQ P
Sbjct: 120 MASAILQSQKPMVVK---RKQTRQELLSP 145
>UNIPROTKB|H0YKD8 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YKD8 SMR:H0YKD8
Ensembl:ENST00000560055 Bgee:H0YKD8 Uniprot:H0YKD8
Length = 170
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 41/121 (33%), Positives = 66/121 (54%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAA--LARLSAV 125
VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ A + R AV
Sbjct: 60 VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMLAGRVGRQQAV 119
Query: 126 N 126
+
Sbjct: 120 S 120
>WB|WBGene00004442 [details] [associations]
symbol:rpl-28 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR002672 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:Z75547 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732 PIR:T24181
RefSeq:NP_506180.1 ProteinModelPortal:Q21930 SMR:Q21930
DIP:DIP-24374N IntAct:Q21930 MINT:MINT-1095802 STRING:Q21930
PaxDb:Q21930 EnsemblMetazoa:R11D1.8.1 EnsemblMetazoa:R11D1.8.2
EnsemblMetazoa:R11D1.8.3 GeneID:179739 KEGG:cel:CELE_R11D1.8
UCSC:R11D1.8.5 CTD:179739 WormBase:R11D1.8 InParanoid:Q21930
OMA:WQVIRNN NextBio:906662 Uniprot:Q21930
Length = 126
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/131 (35%), Positives = 71/131 (54%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L+W++++ N+ FL Q G G FS E NL +NS K+SGLAN+ + + K
Sbjct: 5 LVWQVIRNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAK--G 59
Query: 68 VVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127
VV++T K +K +PA + ST+ K P A V ++A N K A R +A+ R
Sbjct: 60 VVVST-KNEK-GRPAKAVTTSTLSKT-P---VASVRRLAKNAGFNKFNKLAQRRAAAIVR 113
Query: 128 SLKVSKSGVKK 138
S +V K+ V+K
Sbjct: 114 S-QVKKAKVQK 123
>UNIPROTKB|H0YLP6 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YLP6 SMR:H0YLP6
Ensembl:ENST00000558131 Bgee:H0YLP6 Uniprot:H0YLP6
Length = 89
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 68 VVLAT 72
VV+A+
Sbjct: 60 VVVAS 64
>UNIPROTKB|H0YMF4 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YMF4 SMR:H0YMF4
Ensembl:ENST00000558752 Bgee:H0YMF4 Uniprot:H0YMF4
Length = 112
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPG--GKD 65
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P GK
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 66 LSVVLATAKTKK 77
+ VV+ +K
Sbjct: 60 VVVVIKRRSGRK 71
>UNIPROTKB|D4A8B6 [details] [associations]
symbol:D4A8B6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
IPI:IPI00781093 Ensembl:ENSRNOT00000061244 Uniprot:D4A8B6
Length = 119
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLS 67
L W +V+ + L+K+ N ++ EPNNL N+F +SGL + KTV +P D
Sbjct: 5 LQWMVVRNCSSVLIKR----NEQTTYTMEPNNLRARNAFSYSGLIHHKTVGAEPVA-DGR 59
Query: 68 VVLATAKTK-KQNKPASLLHKSTMRKEFPRMAKAVVNQVA--DNYYRPDLKKAALARLSA 124
+T+ + KPA+ ++T++KE + + + V N RPDL AA + SA
Sbjct: 60 RGRGGYETQIRSAKPATSYVRTTIKKEC--VGYSGIRHVIWHQNKCRPDLHMAATRKASA 117
>UNIPROTKB|C9JB50 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 DNASU:6158 GeneID:6158 KEGG:hsa:6158
HGNC:HGNC:10330 PharmGKB:PA34710 GenomeRNAi:6158 NextBio:23915
IPI:IPI00914543 RefSeq:NP_001129609.1 SMR:C9JB50 STRING:C9JB50
Ensembl:ENST00000428193 UCSC:uc010yfy.1 HOGENOM:HOG000186171
Uniprot:C9JB50
Length = 69
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPG--GKD 65
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P GK
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 66 LSVVL 70
+ VV+
Sbjct: 60 VVVVI 64
>UNIPROTKB|G5E9L2 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_b"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 GeneID:6158 KEGG:hsa:6158 HGNC:HGNC:10330
GenomeRNAi:6158 NextBio:23915 RefSeq:NP_001129608.1
ProteinModelPortal:G5E9L2 SMR:G5E9L2 PRIDE:G5E9L2
Ensembl:ENST00000431533 ArrayExpress:G5E9L2 Bgee:G5E9L2
Uniprot:G5E9L2
Length = 87
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPG--GKD 65
L W +V+ + FL+K+ N +S EPNNL NSF+++GL +RKTV ++P GK
Sbjct: 5 LQWMVVRNCSSFLIKR----NKQT-YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 66 LSVVL 70
+ VV+
Sbjct: 60 VVVVI 64
>UNIPROTKB|I3LSZ6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
GeneTree:ENSGT00390000008732 Ensembl:ENSSSCT00000022565 OMA:FCYNGLI
Uniprot:I3LSZ6
Length = 122
Score = 88 (36.0 bits), Expect = 0.00063, P = 0.00063
Identities = 34/116 (29%), Positives = 58/116 (50%)
Query: 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGG--KD 65
L W +V+ + FL+K+ N ++ EPNNL SF ++GL + TV ++P +D
Sbjct: 5 LQWMVVQICSSFLIKK----NKQT-YNMEPNNLKARYSFCYNGLIHHTTVGVEPADDKRD 59
Query: 66 LSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALAR 121
++ + +K K A+L S++R++ + N YR DL AA+ R
Sbjct: 60 RGMMKQGSGQRKPXKKATL---SSIRRK-----------ILKNKYRLDLHTAAIRR 101
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.127 0.354 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 150 150 0.00087 104 3 11 23 0.50 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 580 (62 KB)
Total size of DFA: 126 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.74u 0.10s 16.84t Elapsed: 00:00:01
Total cpu time: 16.74u 0.10s 16.84t Elapsed: 00:00:01
Start: Fri May 10 07:00:33 2013 End: Fri May 10 07:00:34 2013