Query 031915
Match_columns 150
No_of_seqs 105 out of 269
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00197 60S ribosomal protein 100.0 8.3E-50 1.8E-54 307.1 11.3 132 1-144 1-133 (146)
2 KOG3412 60S ribosomal protein 100.0 1.1E-48 2.4E-53 293.7 9.3 132 1-135 1-132 (133)
3 PF01778 Ribosomal_L28e: Ribos 100.0 4.3E-45 9.4E-50 272.0 2.1 117 8-129 1-117 (117)
4 PLN00040 Protein MAK16 homolog 100.0 9.7E-34 2.1E-38 232.5 12.3 116 3-127 1-117 (233)
5 KOG3064 RNA-binding nuclear pr 99.8 3.4E-19 7.5E-24 148.6 6.4 115 3-127 1-117 (303)
6 COG5129 MAK16 Nuclear protein 99.7 7E-17 1.5E-21 133.2 6.4 113 4-125 1-114 (303)
7 TIGR01294 P_lamban phospholamb 17.2 93 0.002 20.0 1.5 12 114-125 7-18 (52)
8 PF04272 Phospholamban: Phosph 16.5 72 0.0016 20.5 0.8 12 114-125 7-18 (52)
9 PF14990 DUF4516: Domain of un 13.3 42 0.00091 21.5 -0.8 10 107-116 29-38 (47)
10 KOG0996 Structural maintenance 13.1 1.5E+02 0.0031 30.7 2.3 49 65-119 1176-1230(1293)
No 1
>PTZ00197 60S ribosomal protein L28; Provisional
Probab=100.00 E-value=8.3e-50 Score=307.14 Aligned_cols=132 Identities=26% Similarity=0.414 Sum_probs=122.2
Q ss_pred CCCCCccchheeeecCceeEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCC
Q 031915 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNK 80 (150)
Q Consensus 1 m~~mS~dL~W~ivr~nnsFl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~k 80 (150)
|+ .|+||||||||+|||||+|++| .+||+||+||+|+|||+||||+|+|+|||+ + |++||+|++|+.+..++
T Consensus 1 ~~-~S~dL~W~iVRnnnsFLvKr~g-----~~FSrEP~NL~n~nS~KysGL~n~KaVgV~-~-~~kgVvv~tKk~k~~~k 72 (146)
T PTZ00197 1 MT-HSTDLQWLLVRQNSKFLQKRNG-----IRLSSDPFNNNANWTKRHCGFLNTKAAVVK-T-KGDRILVTTKDGSSNNK 72 (146)
T ss_pred CC-CchheeeeeeeccceeEEccCC-----CcccCCCCccccccccccccccccceEEEE-e-cCCEEEEEEecCCCCCC
Confidence 55 5999999999999999999975 579999999999999999999999999999 5 89999999999999999
Q ss_pred CCceeeeeeecCChhHHHHHHHHHHHccCCCHhHHHHHHHHHHHHHhhc-CCCCCcccccCcccc
Q 031915 81 PASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSL-KVSKSGVKKRNRQAT 144 (150)
Q Consensus 81 Pak~~~~~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~Al~RaSai~rsq-k~~k~~~~~~~r~~~ 144 (150)
|++++.+++|++|+|++ .|++++.+ |||||+++||+|||||++|| +..|..+.+++|+-+
T Consensus 73 Pak~~~~~tlkkg~Rr~--~V~~~v~~--YR~DL~~aAlrRASAIlrs~~~~~~~~~~~~~~~~~ 133 (146)
T PTZ00197 73 PKQMYKKTVMAAGVRAS--VVSRAVAA--VRPDLASVAFRRARKMACTASRMKKVAAARKERSSK 133 (146)
T ss_pred CchheeEEeeccCccHH--HHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence 99999999999999999 59999876 99999999999999999997 567777778888763
No 2
>KOG3412 consensus 60S ribosomal protein L28 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-48 Score=293.66 Aligned_cols=132 Identities=54% Similarity=0.803 Sum_probs=125.5
Q ss_pred CCCCCccchheeeecCceeEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCC
Q 031915 1 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNK 80 (150)
Q Consensus 1 m~~mS~dL~W~ivr~nnsFl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~k 80 (150)
|+ ||+||+|||||+|||||+|+.+.. +.+||+||+||.++|||+||||+|+|+|||+|+++++||++++|+.+.+++
T Consensus 1 ma-~S~~L~W~VIRnNn~FL~k~r~~~--k~~FstEpnNL~~vnS~rySGL~nkKtvgV~~aA~~kgvvv~~kk~K~aqk 77 (133)
T KOG3412|consen 1 MA-TSGHLIWQVIRNNNAFLVKQRGNV--KKQFSTEPNNLKNVNSYRYSGLANKKTVGVIPAADKKGVVVVTKKTKGAQK 77 (133)
T ss_pred CC-cccceeeeeeecCCceeeeecccc--ccccccCCcccccccccccccccccceeeeeecCCCceEEEEEeccccccC
Confidence 66 799999999999999999987542 589999999999999999999999999999999899999999999999999
Q ss_pred CCceeeeeeecCChhHHHHHHHHHHHccCCCHhHHHHHHHHHHHHHhhcCCCCCc
Q 031915 81 PASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSG 135 (150)
Q Consensus 81 Pak~~~~~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~Al~RaSai~rsqk~~k~~ 135 (150)
|++++.+++|++++|+++++|++++..++|||||+++|++|+|+|.+++++.+..
T Consensus 78 PAk~~~k~~~~k~~r~s~k~la~~i~~nkYR~Dl~~aaiaR~s~~~k~~~v~kt~ 132 (133)
T KOG3412|consen 78 PAKSVVKSTLKKEPRRSLKSLANQIGDNKYRPDLRKAALARLSAISKSARVKKTG 132 (133)
T ss_pred chhhhhHHHHhcccHHHHHHHHHHhhhcccchHHHHHHHHHhhcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999987754
No 3
>PF01778 Ribosomal_L28e: Ribosomal L28e protein family; InterPro: IPR002672 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L28e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. In rat there are 9 or 10 copies of the L28 gene. The L28 protein contains a possible internal duplication of 9 residues [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_O 4A1B_O 4A18_O 4A19_O 3IZR_b.
Probab=100.00 E-value=4.3e-45 Score=271.98 Aligned_cols=117 Identities=54% Similarity=0.782 Sum_probs=95.3
Q ss_pred chheeeecCceeEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCCCCceeee
Q 031915 8 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHK 87 (150)
Q Consensus 8 L~W~ivr~nnsFl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~kPak~~~~ 87 (150)
|||||||+|||||+|+++.+ .+||+||+||+|+||++||||||+++|||+++ ++|+|+|++|+.++.++|++++.+
T Consensus 1 L~W~iir~~~~Fl~K~~~~~---~~fs~ep~NL~~~~s~kysgLan~k~v~V~~~-~~g~v~l~~K~~~~~~~P~k~~~~ 76 (117)
T PF01778_consen 1 LQWEIIRNNNCFLVKRNGIG---KTFSREPGNLTNLNSFKYSGLANSKAVGVRPA-PNGGVVLVTKKPKRANKPAKSWEK 76 (117)
T ss_dssp HHHHHHTTT-TTEEEET--T---EEEE--TT-SSSB-STTT-TTTSS--EECCCE-GGGECCCEEE-----TTTT--EEE
T ss_pred CEEEEecCcceEEEEeCCCC---CcccCCCCcccccccccccccccceeEEEEEC-CCCcEEEEEccccccCCCcceeEE
Confidence 79999999999999998543 79999999999999999999999999999997 478999999999999999999999
Q ss_pred eeecCChhHHHHHHHHHHHccCCCHhHHHHHHHHHHHHHhhc
Q 031915 88 STMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSL 129 (150)
Q Consensus 88 ~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~Al~RaSai~rsq 129 (150)
++|++|+|+++++|++.+.. +|||||.++|++|+|+|++||
T Consensus 77 ~~l~k~~r~a~~~I~~~~~~-~yr~dL~~~a~~R~s~i~~sq 117 (117)
T PF01778_consen 77 VTLSKNSRKALKSIKKQLAK-KYRPDLRKAALRRASAILRSQ 117 (117)
T ss_dssp EEESSCHHHHHHHHHHHTSS-THHHHHCCHHHHHHHHHCCH-
T ss_pred EecCccHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998 899999999999999999998
No 4
>PLN00040 Protein MAK16 homolog; Provisional
Probab=100.00 E-value=9.7e-34 Score=232.49 Aligned_cols=116 Identities=21% Similarity=0.363 Sum_probs=105.5
Q ss_pred CCCccchheeeecCce-eEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCCC
Q 031915 3 TVPGQLIWEIVKKNNC-FLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKP 81 (150)
Q Consensus 3 ~mS~dL~W~ivr~nns-Fl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~kP 81 (150)
||||||+|+||+++|| |++|+.+ .+||+||+||||+||++||||||++++||.++ +|+|+|++|+.+++|+|
T Consensus 1 m~SddLiW~IIr~~~csF~vK~~~-----~~Fcrnp~NltglcsrkycgLANsKyatV~~~--~G~v~L~~Kt~erah~P 73 (233)
T PLN00040 1 MQHDEVIWQVINHNHCSFKAKIDT-----GNFCRNKYNVTGLCNRSSCPLANSRYATIREE--DGRFYLYMKTIERAHMP 73 (233)
T ss_pred CCccchhhhhhcCcceeEEEccCC-----CcccCCCCcccccccccccccccceeeEEEEc--CCEEEEEEecccccCCc
Confidence 5899999999999999 8888764 58999999999999999999999999999996 78999999999999999
Q ss_pred CceeeeeeecCChhHHHHHHHHHHHccCCCHhHHHHHHHHHHHHHh
Q 031915 82 ASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNR 127 (150)
Q Consensus 82 ak~~~~~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~Al~RaSai~r 127 (150)
+++|.+++|++|+|+++++|.+.+. ++=.-|..-+-.|...|..
T Consensus 74 ak~w~kv~Lskn~rkalk~I~~~L~--~w~~~~ihk~KqRltkl~q 117 (233)
T PLN00040 74 NKLWEKVKLSRNYEKALEQIDKHLA--YWPKFLVHKNKQRLTKMTQ 117 (233)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHh--hCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 3666677777777777654
No 5
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=99.77 E-value=3.4e-19 Score=148.57 Aligned_cols=115 Identities=18% Similarity=0.374 Sum_probs=101.9
Q ss_pred CCCccchheeeecCce-eEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCCC
Q 031915 3 TVPGQLIWEIVKKNNC-FLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKP 81 (150)
Q Consensus 3 ~mS~dL~W~ivr~nns-Fl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~kP 81 (150)
||||+++|++|.+++| |.+|..+ .+||++-|||||+|++..|+|||+++.+|... +|.++|++|.+.++|-|
T Consensus 1 Mq~DeviW~vin~~~CS~k~kte~-----~~fCRNeyNvTGLCnR~SCPLANSrYATVre~--~g~~yLymKt~ERaH~P 73 (303)
T KOG3064|consen 1 MQSDEVIWQVINKSFCSYKIKTET-----QTFCRNEYNVTGLCNRSSCPLANSRYATVREE--NGVLYLYMKTIERAHMP 73 (303)
T ss_pred CcchHHHHHHhchhhcceeeeccc-----cchhccccccceeeccccCcCccccceeEeec--CCEEEEEEechhhhcCc
Confidence 5899999999999999 9998865 58999999999999999999999999999985 89999999999999999
Q ss_pred CceeeeeeecCChhHHHHHHHHHHHccCCCHh-HHHHHHHHHHHHHh
Q 031915 82 ASLLHKSTMRKEFPRMAKAVVNQVADNYYRPD-LKKAALARLSAVNR 127 (150)
Q Consensus 82 ak~~~~~~l~k~~R~~~k~I~~~~~~~~yR~D-L~~~Al~RaSai~r 127 (150)
.++|.++.|++|+-+++.+|...+- |=|. ++.-.-.|++.|.+
T Consensus 74 ~klwErikLSkNyekALeQIde~Ll---~Wp~~~~HKcKQRltklTQ 117 (303)
T KOG3064|consen 74 RKLWERIKLSKNYEKALEQIDEQLL---YWPKYVIHKCKQRLTKLTQ 117 (303)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876 5554 45555566666543
No 6
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=99.67 E-value=7e-17 Score=133.20 Aligned_cols=113 Identities=17% Similarity=0.331 Sum_probs=98.4
Q ss_pred CCccchheeeecCce-eEEeecCCCCCccccccCCCCccccccccccCcccceeeeEEeCCCCCeEEEEEeccccCCCCC
Q 031915 4 VPGQLIWEIVKKNNC-FLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPA 82 (150)
Q Consensus 4 mS~dL~W~ivr~nns-Fl~K~~~~~~~~~~FS~EP~NL~n~~S~kysGLan~Kav~V~~~~~~~gv~l~~Kk~k~~~kPa 82 (150)
|||+.+|+|+-.|+| |-+|..+ +.||++-||+||+|.+..|+|||+++.+|.+. +|.++|++|.+.++|-|+
T Consensus 1 msDE~~Wqv~g~~fCS~rik~e~-----qnfCRNeyNVTGLC~RqSCPLANSrYATVr~d--ngkLyLymKtpERaH~P~ 73 (303)
T COG5129 1 MSDESLWQVSGENFCSFRIKTEE-----QNFCRNEYNVTGLCDRQSCPLANSRYATVRAD--NGKLYLYMKTPERAHVPR 73 (303)
T ss_pred CchhHHHHHccccccceeeecch-----hhhhhcccccceeeccccCcCccCcceEEEec--CCEEEEEecChhhccCcH
Confidence 799999999999999 8888755 57999999999999999999999999999984 899999999999999999
Q ss_pred ceeeeeeecCChhHHHHHHHHHHHccCCCHhHHHHHHHHHHHH
Q 031915 83 SLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAV 125 (150)
Q Consensus 83 k~~~~~~l~k~~R~~~k~I~~~~~~~~yR~DL~~~Al~RaSai 125 (150)
++|.++.|++|+-+++++|...+-- +-.-...-+-.|.+.|
T Consensus 74 klwerIkLSkNY~kAL~QIde~Ll~--W~~~~iHkCKQrltkL 114 (303)
T COG5129 74 KLWERIKLSKNYEKALKQIDESLLF--WDEKVIHKCKQRLTKL 114 (303)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHH
Confidence 9999999999999999999987652 3333444455555544
No 7
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=17.18 E-value=93 Score=20.00 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 031915 114 LKKAALARLSAV 125 (150)
Q Consensus 114 L~~~Al~RaSai 125 (150)
+.+.|++|||.|
T Consensus 7 ~trsairras~i 18 (52)
T TIGR01294 7 LTRSAIRRASTI 18 (52)
T ss_pred HHHHHHHHHHhc
Confidence 677899999987
No 8
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=16.46 E-value=72 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 031915 114 LKKAALARLSAV 125 (150)
Q Consensus 114 L~~~Al~RaSai 125 (150)
+...|++|||.|
T Consensus 7 mtrsairrasti 18 (52)
T PF04272_consen 7 MTRSAIRRASTI 18 (52)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhc
Confidence 678899999876
No 9
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=13.34 E-value=42 Score=21.50 Aligned_cols=10 Identities=50% Similarity=0.943 Sum_probs=7.7
Q ss_pred ccCCCHhHHH
Q 031915 107 DNYYRPDLKK 116 (150)
Q Consensus 107 ~~~yR~DL~~ 116 (150)
.++|||||.-
T Consensus 29 H~~ykPdlti 38 (47)
T PF14990_consen 29 HNIYKPDLTI 38 (47)
T ss_pred HHHhCccCCC
Confidence 4689999863
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=13.12 E-value=1.5e+02 Score=30.72 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCeEEEEEeccccCCCCCceeeeeeecCChhHHHHHHHHHHHccCCCH------hHHHHHH
Q 031915 65 DLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRP------DLKKAAL 119 (150)
Q Consensus 65 ~~gv~l~~Kk~k~~~kPak~~~~~~l~k~~R~~~k~I~~~~~~~~yR~------DL~~~Al 119 (150)
..||.++.+ -|.|+|..+..=+|.-+++.+++=.++=..||| |=..|||
T Consensus 1176 seGV~FSVr------PpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAAL 1230 (1293)
T KOG0996|consen 1176 SEGVMFSVR------PPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1230 (1293)
T ss_pred ccCceEEee------CchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhh
Confidence 478998876 578899977766788889999998888788998 5555554
Done!