BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031916
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization.
 pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization.
 pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization.
 pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization.
 pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization.
 pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant
          Mitochondrial Nucleoside Diphosphate Kinase:
          Identification Of Residues Involved In Serine
          Phosphorylation And Oligomerization
          Length = 182

 Score = 29.6 bits (65), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 4  SSYPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFS 49
          S +  + F    +   +P   F QQH   H L E P+ +GLCD  S
Sbjct: 54 SRFERKGFKLVGIKVLIPTKQFAQQH--YHDLKERPFFNGLCDFLS 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,200,927
Number of Sequences: 62578
Number of extensions: 139208
Number of successful extensions: 288
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 10
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)