Query 031916
Match_columns 150
No_of_seqs 111 out of 732
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 1.4E-34 3E-39 207.6 7.0 104 38-141 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 100.0 1.2E-30 2.6E-35 184.9 6.2 99 40-139 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 76.2 1.6 3.5E-05 32.9 1.6 16 102-117 63-78 (139)
4 PF04749 PLAC8: PLAC8 family; 53.5 13 0.00028 25.4 2.5 20 121-140 15-34 (106)
5 TIGR01571 A_thal_Cys_rich unch 40.0 25 0.00054 24.7 2.2 17 103-122 27-43 (104)
6 PF06570 DUF1129: Protein of u 36.5 19 0.00042 28.2 1.3 19 98-116 188-206 (206)
7 PF06679 DUF1180: Protein of u 27.2 19 0.00041 27.9 -0.2 19 100-118 116-136 (163)
8 PF12273 RCR: Chitin synthesis 26.7 23 0.0005 25.7 0.2 14 101-114 19-32 (130)
9 KOG3657 Mitochondrial DNA poly 26.4 38 0.00082 32.9 1.5 17 100-116 249-265 (1075)
10 COG3718 IolB Uncharacterized e 24.8 41 0.00088 27.9 1.3 13 2-14 165-177 (270)
11 PF14714 KH_dom-like: KH-domai 23.2 65 0.0014 21.6 1.9 20 99-118 56-75 (80)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=100.00 E-value=1.4e-34 Score=207.62 Aligned_cols=104 Identities=39% Similarity=0.817 Sum_probs=94.7
Q ss_pred CCCCCCCccccCCCCcccccCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhccccccchhHHHHHHHHhCCCCCC
Q 031916 38 GPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGP 117 (150)
Q Consensus 38 ~~W~~gLf~C~~d~~~C~~~~~CPC~~~g~~~~rl~~g~~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~kygI~Gs~ 117 (150)
++|++|||||++|+++|++++||||+++|++++|++++..+|...++++++++.+.++.+++.+.+|++||+||||+|+.
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999999977778887776666655556677889999999999999999999
Q ss_pred cchhhHhhcchhHHHHHHHHHHHH
Q 031916 118 CGDCLAHFCCDTCALSQEYRELKA 141 (150)
Q Consensus 118 ~~Dc~~~~cC~~Cal~Q~~rEl~~ 141 (150)
++|+++++||++|+|+|++||||+
T Consensus 81 ~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 81 CDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred cccchHHHHhhhHHHHHHHHHHhC
Confidence 999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.96 E-value=1.2e-30 Score=184.93 Aligned_cols=99 Identities=43% Similarity=1.032 Sum_probs=84.0
Q ss_pred CCCCCccccCCCCcccccCchhHHHHHHHHHHhcCCC-------CCCchhHHHHHHHHHhhccccccchhHHHHHHHHhC
Q 031916 40 WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGS-------SSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYM 112 (150)
Q Consensus 40 W~~gLf~C~~d~~~C~~~~~CPC~~~g~~~~rl~~g~-------~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~kyg 112 (150)
|++|||||++|+++|++++||||++++++++|++.+. ..|....+++.++.++ ++.+++.+.+|++||+|||
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~-~l~~~~~~~~R~~iR~ry~ 79 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACL-GLGWCYGCSLRQQIRERYG 79 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHH-HHhHhhhhhHHHHHHHHhC
Confidence 9999999999999999999999999999999998864 3455444444332212 3445588999999999999
Q ss_pred CCCCCcchhhHhhcchhHHHHHHHHHH
Q 031916 113 LKGGPCGDCLAHFCCDTCALSQEYREL 139 (150)
Q Consensus 113 I~Gs~~~Dc~~~~cC~~Cal~Q~~rEl 139 (150)
|+|+.++|+++++||+||||+||+|||
T Consensus 80 I~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 80 IQGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred CCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=76.17 E-value=1.6 Score=32.93 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=10.1
Q ss_pred hHHHHHHHHhCCCCCC
Q 031916 102 CYRSKMRQQYMLKGGP 117 (150)
Q Consensus 102 ~~R~~iR~kygI~Gs~ 117 (150)
.+|..||.||||+.+-
T Consensus 63 ~mRq~IRdKY~l~k~e 78 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKKE 78 (139)
T ss_dssp HHHHHHHHHHT-----
T ss_pred HHHHHHHhhccccccc
Confidence 4799999999999763
No 4
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=53.45 E-value=13 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=9.7
Q ss_pred hhHhhcchhHHHHHHHHHHH
Q 031916 121 CLAHFCCDTCALSQEYRELK 140 (150)
Q Consensus 121 c~~~~cC~~Cal~Q~~rEl~ 140 (150)
++.++||+++++.|.++.++
T Consensus 15 c~~~~~cPc~~~~~~~~~l~ 34 (106)
T PF04749_consen 15 CCLACFCPCCSFGQNAERLG 34 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555554444
No 5
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=40.03 E-value=25 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=8.8
Q ss_pred HHHHHHHHhCCCCCCcchhh
Q 031916 103 YRSKMRQQYMLKGGPCGDCL 122 (150)
Q Consensus 103 ~R~~iR~kygI~Gs~~~Dc~ 122 (150)
+=.++.++++ +...+|.
T Consensus 27 ~~g~~~~~~~---~~~~~C~ 43 (104)
T TIGR01571 27 LFGQIAETLG---TFAGECL 43 (104)
T ss_pred HHHHHHHHhC---CCCCchh
Confidence 3345556655 6445554
No 6
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.46 E-value=19 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=15.9
Q ss_pred ccchhHHHHHHHHhCCCCC
Q 031916 98 LYSSCYRSKMRQQYMLKGG 116 (150)
Q Consensus 98 ~~~~~~R~~iR~kygI~Gs 116 (150)
+.....|.-+|+||||+|+
T Consensus 188 ~i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 188 VIAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 3456789999999999985
No 7
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.24 E-value=19 Score=27.90 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=12.5
Q ss_pred chhHHHHHH--HHhCCCCCCc
Q 031916 100 SSCYRSKMR--QQYMLKGGPC 118 (150)
Q Consensus 100 ~~~~R~~iR--~kygI~Gs~~ 118 (150)
.+..|++.| +||||-++..
T Consensus 116 ~~R~r~~~rktRkYgvl~~~~ 136 (163)
T PF06679_consen 116 TFRLRRRNRKTRKYGVLTTRA 136 (163)
T ss_pred HHhhccccccceeecccCCCc
Confidence 344555455 6999998753
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.72 E-value=23 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=6.7
Q ss_pred hhHHHHHHHHhCCC
Q 031916 101 SCYRSKMRQQYMLK 114 (150)
Q Consensus 101 ~~~R~~iR~kygI~ 114 (150)
+..+.+-|+|.|++
T Consensus 19 ~~~~~rRR~r~G~~ 32 (130)
T PF12273_consen 19 FYCHNRRRRRRGLQ 32 (130)
T ss_pred HHHHHHHHhhcCCC
Confidence 33444444444765
No 9
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=26.44 E-value=38 Score=32.93 Aligned_cols=17 Identities=29% Similarity=0.646 Sum_probs=15.0
Q ss_pred chhHHHHHHHHhCCCCC
Q 031916 100 SSCYRSKMRQQYMLKGG 116 (150)
Q Consensus 100 ~~~~R~~iR~kygI~Gs 116 (150)
+..-|++|||.|+|+||
T Consensus 249 VsfDRaRirEeY~i~~S 265 (1075)
T KOG3657|consen 249 VSFDRARIREEYNINGS 265 (1075)
T ss_pred ccchHHHHHHHHhcccc
Confidence 44579999999999998
No 10
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=24.80 E-value=41 Score=27.92 Aligned_cols=13 Identities=54% Similarity=0.761 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCC
Q 031916 2 NSSSYPNQKFDHQ 14 (150)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (150)
|.|||||-|-|+.
T Consensus 165 n~SSYPPHKHD~d 177 (270)
T COG3718 165 NWSSYPPHKHDED 177 (270)
T ss_pred CcCCCCCCccccc
Confidence 7899999986653
No 11
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=23.23 E-value=65 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHhCCCCCCc
Q 031916 99 YSSCYRSKMRQQYMLKGGPC 118 (150)
Q Consensus 99 ~~~~~R~~iR~kygI~Gs~~ 118 (150)
|.-.+..+||+.||++|..+
T Consensus 56 Y~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHCCCCceeE
Confidence 44568899999999999854
Done!