Query 031916
Match_columns 150
No_of_seqs 111 out of 732
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 85.5 0.39 1.3E-05 28.9 1.7 12 102-113 38-49 (49)
2 3rk3_E Complexin-1; snare prot 84.8 0.45 1.5E-05 30.0 1.9 14 102-115 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 82.7 0.61 2.1E-05 30.7 1.9 14 102-115 45-58 (79)
4 3k6g_A Telomeric repeat-bindin 15.6 65 0.0022 22.3 1.5 14 101-114 74-87 (111)
5 1yfb_A Transition state regula 12.8 1.1E+02 0.0037 18.5 1.9 14 103-116 26-39 (59)
6 1c5a_A Complement C5A anaphyla 10.5 1.5E+02 0.0052 18.5 2.1 28 120-148 45-72 (73)
7 4egd_A Uncharacterized protein 10.3 1.2E+02 0.0039 24.0 1.7 14 103-116 193-206 (260)
8 2oez_A UPF0289 protein VP2528; 10.0 88 0.003 24.6 0.9 14 105-118 120-133 (247)
9 2l66_A SSO7C4, transcriptional 9.7 1.5E+02 0.0052 17.0 1.8 14 103-116 16-29 (53)
10 3j21_U 50S ribosomal protein L 8.9 1.3E+02 0.0045 21.0 1.4 13 102-114 30-42 (121)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=85.48 E-value=0.39 Score=28.93 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=10.7
Q ss_pred hHHHHHHHHhCC
Q 031916 102 CYRSKMRQQYML 113 (150)
Q Consensus 102 ~~R~~iR~kygI 113 (150)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 479999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=84.84 E-value=0.45 Score=29.97 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=11.8
Q ss_pred hHHHHHHHHhCCCC
Q 031916 102 CYRSKMRQQYMLKG 115 (150)
Q Consensus 102 ~~R~~iR~kygI~G 115 (150)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 47999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=82.67 E-value=0.61 Score=30.66 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=11.9
Q ss_pred hHHHHHHHHhCCCC
Q 031916 102 CYRSKMRQQYMLKG 115 (150)
Q Consensus 102 ~~R~~iR~kygI~G 115 (150)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 47999999999984
No 4
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=15.59 E-value=65 Score=22.29 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=11.4
Q ss_pred hhHHHHHHHHhCCC
Q 031916 101 SCYRSKMRQQYMLK 114 (150)
Q Consensus 101 ~~~R~~iR~kygI~ 114 (150)
-.+|.++|+|||-+
T Consensus 74 ~~~R~qL~~KfG~e 87 (111)
T 3k6g_A 74 EDTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhhH
Confidence 35799999999954
No 5
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=12.76 E-value=1.1e+02 Score=18.52 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCCC
Q 031916 103 YRSKMRQQYMLKGG 116 (150)
Q Consensus 103 ~R~~iR~kygI~Gs 116 (150)
+=++||+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 44789999999954
No 6
>1c5a_A Complement C5A anaphylatoxin; complement factor; NMR {Sus scrofa domestica} SCOP: a.50.1.1
Probab=10.48 E-value=1.5e+02 Score=18.53 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=15.6
Q ss_pred hhhHhhcchhHHHHHHHHHHHHcCCCCCC
Q 031916 120 DCLAHFCCDTCALSQEYRELKARGFDMSL 148 (150)
Q Consensus 120 Dc~~~~cC~~Cal~Q~~rEl~~r~~~p~~ 148 (150)
+-|+..|-.||..+...|+ +.+..+..|
T Consensus 45 ~~C~~aFl~CC~~~~~lR~-~~~~~~l~L 72 (73)
T 1c5a_A 45 PKCVKAFKDCCYIANQVRA-EQSHKNIQL 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TC-------
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccccCCC
Confidence 4456677789998888887 555555544
No 7
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=10.31 E-value=1.2e+02 Score=24.05 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCCC
Q 031916 103 YRSKMRQQYMLKGG 116 (150)
Q Consensus 103 ~R~~iR~kygI~Gs 116 (150)
--+++|+||+|+..
T Consensus 193 NVKQLRkrY~IpT~ 206 (260)
T 4egd_A 193 NVQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred hHHHHHHhcCCCCC
Confidence 35789999999865
No 8
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=9.98 E-value=88 Score=24.61 Aligned_cols=14 Identities=50% Similarity=1.073 Sum_probs=8.5
Q ss_pred HHHHHHhCCCCCCc
Q 031916 105 SKMRQQYMLKGGPC 118 (150)
Q Consensus 105 ~~iR~kygI~Gs~~ 118 (150)
..||.|.+|+|..|
T Consensus 120 ~~iRQR~~iPGG~C 133 (247)
T 2oez_A 120 SSIRQRFNLPGGSC 133 (247)
T ss_dssp HHHHHHHHC----C
T ss_pred HHHHhhhcCCCccC
Confidence 47999999998754
No 9
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=9.73 E-value=1.5e+02 Score=17.03 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=10.9
Q ss_pred HHHHHHHHhCCCCC
Q 031916 103 YRSKMRQQYMLKGG 116 (150)
Q Consensus 103 ~R~~iR~kygI~Gs 116 (150)
+=+++|+++||+..
T Consensus 16 IPk~ir~~lgi~~G 29 (53)
T 2l66_A 16 IPAKVRQKFQIKEG 29 (53)
T ss_dssp CCHHHHHHSCCCTT
T ss_pred eCHHHHHHcCcCCC
Confidence 34789999999843
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=8.92 E-value=1.3e+02 Score=21.00 Aligned_cols=13 Identities=15% Similarity=0.495 Sum_probs=10.5
Q ss_pred hHHHHHHHHhCCC
Q 031916 102 CYRSKMRQQYMLK 114 (150)
Q Consensus 102 ~~R~~iR~kygI~ 114 (150)
.+=.++|++||++
T Consensus 30 ~LSkeLR~ky~~r 42 (121)
T 3j21_U 30 PLSRELREKYKVR 42 (121)
T ss_dssp EBCHHHHHHTCCS
T ss_pred cCCHHHHHHhCCc
Confidence 3458999999987
Done!