Query 031916
Match_columns 150
No_of_seqs 111 out of 732
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 11:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nexa1 a.157.1.1 (A:116-185) 12.5 50 0.0036 19.2 1.8 16 101-116 45-60 (70)
2 d1mkya3 d.52.5.1 (A:359-439) P 11.9 53 0.0039 19.6 1.9 20 99-118 53-73 (81)
3 d2p7vb1 a.4.13.2 (B:546-613) S 11.0 59 0.0043 18.7 1.8 16 101-116 8-23 (68)
4 d1k6ya1 a.4.10.1 (A:1-46) N-te 10.3 30 0.0022 18.9 0.2 19 105-123 20-38 (46)
5 d2csba2 a.60.2.4 (A:294-350) T 9.2 64 0.0047 17.7 1.3 11 106-116 7-17 (57)
6 d1hska2 d.146.1.1 (A:209-317) 9.2 67 0.0049 20.2 1.7 16 100-115 82-97 (109)
7 d1ku3a_ a.4.13.2 (A:) Sigma70 9.2 80 0.0058 17.7 1.9 17 100-116 10-26 (61)
8 d1tjla2 g.39.1.13 (A:111-151) 8.4 71 0.0052 16.5 1.3 14 129-142 24-37 (41)
9 d1e0ea_ a.4.10.1 (A:) N-termin 8.4 39 0.0028 18.4 0.1 19 105-123 20-38 (46)
10 d1uxya2 d.146.1.1 (A:201-342) 8.3 84 0.0061 20.6 2.0 16 100-115 107-122 (142)
No 1
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.47 E-value=50 Score=19.22 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=13.4
Q ss_pred hhHHHHHHHHhCCCCC
Q 031916 101 SCYRSKMRQQYMLKGG 116 (150)
Q Consensus 101 ~~~R~~iR~kygI~Gs 116 (150)
+..-.+||+.+||+.+
T Consensus 45 gkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 45 GRSPEEIRRTFNIVND 60 (70)
T ss_dssp TCCHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHhCCCCC
Confidence 4567899999999965
No 2
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=11.93 E-value=53 Score=19.60 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=15.8
Q ss_pred cchhHHHHHHHH-hCCCCCCc
Q 031916 99 YSSCYRSKMRQQ-YMLKGGPC 118 (150)
Q Consensus 99 ~~~~~R~~iR~k-ygI~Gs~~ 118 (150)
|.-.+...||++ ||++|..+
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 445678999998 99999864
No 3
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=11.00 E-value=59 Score=18.74 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhCCCCC
Q 031916 101 SCYRSKMRQQYMLKGG 116 (150)
Q Consensus 101 ~~~R~~iR~kygI~Gs 116 (150)
-..|.-|+.+|||.+.
T Consensus 8 ~rE~~Ii~~rfGl~~~ 23 (68)
T d2p7vb1 8 AREAKVLRMRFGIDMN 23 (68)
T ss_dssp HHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4578889999999864
No 4
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=10.33 E-value=30 Score=18.90 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=12.9
Q ss_pred HHHHHHhCCCCCCcchhhH
Q 031916 105 SKMRQQYMLKGGPCGDCLA 123 (150)
Q Consensus 105 ~~iR~kygI~Gs~~~Dc~~ 123 (150)
..+|++|||+.....+++.
T Consensus 20 ~~L~~~F~ip~~vAr~IV~ 38 (46)
T d1k6ya1 20 RAMASDFNLPPVVAKEIVA 38 (46)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4678999998655555443
No 5
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=9.23 E-value=64 Score=17.72 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=8.8
Q ss_pred HHHHHhCCCCC
Q 031916 106 KMRQQYMLKGG 116 (150)
Q Consensus 106 ~iR~kygI~Gs 116 (150)
++..||||+.+
T Consensus 7 klqdrygired 17 (57)
T d2csba2 7 KLQDRYGIRED 17 (57)
T ss_dssp HHHHHHCCCHH
T ss_pred ehhhhhccHHH
Confidence 67899999954
No 6
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=9.17 E-value=67 Score=20.23 Aligned_cols=16 Identities=0% Similarity=0.144 Sum_probs=13.6
Q ss_pred chhHHHHHHHHhCCCC
Q 031916 100 SSCYRSKMRQQYMLKG 115 (150)
Q Consensus 100 ~~~~R~~iR~kygI~G 115 (150)
.-.+|.+|+++|||.=
T Consensus 82 i~~i~~~V~~~~gI~L 97 (109)
T d1hska2 82 IHYVQKTVKEKFGIEL 97 (109)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCcc
Confidence 3569999999999983
No 7
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=9.16 E-value=80 Score=17.65 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=13.6
Q ss_pred chhHHHHHHHHhCCCCC
Q 031916 100 SSCYRSKMRQQYMLKGG 116 (150)
Q Consensus 100 ~~~~R~~iR~kygI~Gs 116 (150)
.-..|.-|+.+|||.+.
T Consensus 10 ~~rer~Ii~~ryGl~~~ 26 (61)
T d1ku3a_ 10 SEREAMVLKMRKGLIDG 26 (61)
T ss_dssp CHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 44678899999999765
No 8
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=8.38 E-value=71 Score=16.54 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHc
Q 031916 129 TCALSQEYRELKAR 142 (150)
Q Consensus 129 ~Cal~Q~~rEl~~r 142 (150)
-|+-+|+.+|-+.+
T Consensus 24 ~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 24 LCIDCKTLAEIREK 37 (41)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 46666777776544
No 9
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=8.36 E-value=39 Score=18.36 Aligned_cols=19 Identities=0% Similarity=0.097 Sum_probs=13.5
Q ss_pred HHHHHHhCCCCCCcchhhH
Q 031916 105 SKMRQQYMLKGGPCGDCLA 123 (150)
Q Consensus 105 ~~iR~kygI~Gs~~~Dc~~ 123 (150)
..+|.+|||+.....+++.
T Consensus 20 ~~L~~~F~lp~~vAr~IV~ 38 (46)
T d1e0ea_ 20 KELSHKFGIPNLVARQIVN 38 (46)
T ss_dssp HHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4688999998665555554
No 10
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.34 E-value=84 Score=20.56 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.5
Q ss_pred chhHHHHHHHHhCCCC
Q 031916 100 SSCYRSKMRQQYMLKG 115 (150)
Q Consensus 100 ~~~~R~~iR~kygI~G 115 (150)
.-.+|..+++||||.=
T Consensus 107 ~~~I~~~V~~kfgI~L 122 (142)
T d1uxya2 107 AHHVRQKVGEKFNVWL 122 (142)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCee
Confidence 3569999999999983
Done!