BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031919
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L16|A Chain A, Solution Structure Of Bacillus Subtilits Tatad Protein In
           Dpc Micelles
          Length = 78

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 69  LGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121
           +G+P L++I  +A ++FGP KLPE+G++ G+T+  F+ A K   S  +KE  S
Sbjct: 5   IGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKS 57


>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
          Length = 484

 Score = 27.7 bits (60), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 113 SELKKEPDSETDPPGEKPTAISEERKDEGKISS 145
           SE+  EP+S T+ P E PTA     + EG + +
Sbjct: 377 SEINYEPNSYTETPKEDPTAKISSFEVEGNVGN 409


>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase
           From Coccidioides Immitis
          Length = 310

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 100 TVKSFQQAAKEFESELKKEPDSETDPP 126
           T+    +A KEFES L    D++T PP
Sbjct: 85  TIYPCSEAIKEFESNLAAPQDADTPPP 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.129    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,825,116
Number of Sequences: 62578
Number of extensions: 96320
Number of successful extensions: 339
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 28
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)