Query 031919
Match_columns 150
No_of_seqs 141 out of 1195
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14857 tatA twin arginine tr 99.8 1.2E-20 2.7E-25 137.4 7.3 62 64-125 1-62 (90)
2 COG1826 TatA Sec-independent p 99.8 1.8E-19 4E-24 130.8 5.7 54 66-119 1-54 (94)
3 PRK14860 tatA twin arginine tr 99.8 4E-19 8.6E-24 122.4 5.3 46 66-111 1-46 (64)
4 PRK14859 tatA twin arginine tr 99.8 3.8E-19 8.2E-24 122.2 5.1 47 66-112 1-47 (63)
5 PRK14861 tatA twin arginine tr 99.8 6.7E-19 1.4E-23 120.2 6.1 55 66-120 2-56 (61)
6 PRK14858 tatA twin arginine tr 99.8 4.7E-19 1E-23 132.9 5.2 56 66-121 1-56 (108)
7 PRK00575 tatA twin arginine tr 99.8 1.5E-18 3.2E-23 127.1 7.4 57 66-122 1-57 (92)
8 PRK01614 tatE twin arginine tr 99.8 6.6E-19 1.4E-23 127.0 4.9 82 66-148 1-82 (85)
9 PRK03554 tatA twin arginine tr 99.8 7.6E-19 1.7E-23 127.8 5.0 48 66-113 1-48 (89)
10 PRK01833 tatA twin arginine tr 99.8 1.1E-18 2.3E-23 123.3 5.3 47 66-112 1-47 (74)
11 PRK03625 tatE twin arginine tr 99.8 1.1E-18 2.5E-23 121.1 5.0 49 66-114 1-49 (67)
12 PRK04598 tatA twin arginine tr 99.7 1.8E-18 3.8E-23 124.1 5.7 48 66-113 1-48 (81)
13 PRK02958 tatA twin arginine tr 99.7 1.9E-18 4.1E-23 121.8 5.7 50 66-115 1-50 (73)
14 PF02416 MttA_Hcf106: mttA/Hcf 99.7 4.4E-18 9.6E-23 112.8 6.4 51 69-119 1-51 (53)
15 PRK00404 tatB sec-independent 99.7 3.4E-18 7.3E-23 133.4 6.3 55 66-120 1-55 (141)
16 PRK01770 sec-independent trans 99.7 3.2E-18 6.8E-23 137.1 5.9 54 66-119 1-54 (171)
17 PRK00708 sec-independent trans 99.7 3.1E-18 6.8E-23 140.8 5.8 57 66-122 1-57 (209)
18 PRK04098 sec-independent trans 99.7 3.9E-18 8.5E-23 135.1 6.0 56 66-121 1-56 (158)
19 PRK00442 tatA twin arginine tr 99.7 7.7E-18 1.7E-22 123.3 7.1 56 66-121 1-56 (92)
20 TIGR01410 tatB twin arginine-t 99.7 4E-18 8.6E-23 121.3 5.4 55 67-121 1-55 (80)
21 TIGR01411 tatAE twin arginine- 99.7 6.9E-18 1.5E-22 109.7 4.4 46 68-113 1-46 (47)
22 PRK04561 tatA twin arginine tr 99.7 7.4E-18 1.6E-22 119.3 4.9 50 66-115 1-50 (75)
23 PRK01371 sec-independent trans 99.7 1E-17 2.2E-22 130.2 6.0 57 66-122 1-57 (137)
24 PRK04654 sec-independent trans 99.7 1.3E-17 2.7E-22 137.4 6.2 56 66-121 1-56 (214)
25 PRK01919 tatB sec-independent 99.7 1.6E-17 3.4E-22 132.9 5.9 56 66-121 1-56 (169)
26 PRK00191 tatA twin arginine tr 99.7 1.9E-17 4.2E-22 119.4 5.2 53 67-119 1-53 (84)
27 PRK00720 tatA twin arginine tr 99.7 3.3E-17 7.3E-22 116.8 6.3 48 66-113 1-48 (78)
28 PRK03100 sec-independent trans 99.7 2.5E-17 5.5E-22 127.8 5.8 55 66-120 1-56 (136)
29 PRK01470 tatA twin arginine tr 99.7 2.7E-17 5.8E-22 108.9 4.3 46 67-112 1-46 (51)
30 PRK00182 tatB sec-independent 99.7 9.1E-17 2E-21 127.6 6.0 55 66-120 1-56 (160)
31 PRK14857 tatA twin arginine tr 77.5 10 0.00023 27.7 6.0 55 73-127 13-68 (90)
32 PF12732 YtxH: YtxH-like prote 69.3 19 0.00041 24.5 5.5 43 75-117 9-51 (74)
33 PF06103 DUF948: Bacterial pro 62.0 23 0.0005 24.7 4.9 22 94-115 21-42 (90)
34 PF07423 DUF1510: Protein of u 58.8 2.1 4.6E-05 35.8 -1.0 32 63-96 16-47 (217)
35 PF10746 Phage_holin_6: Phage 56.1 18 0.00039 25.3 3.4 36 65-106 27-62 (66)
36 PF13730 HTH_36: Helix-turn-he 55.3 47 0.001 20.5 5.1 46 68-113 2-51 (55)
37 COG1687 AzlD Predicted branche 53.1 19 0.0004 27.4 3.3 19 83-101 25-43 (106)
38 PF08229 SHR3_chaperone: ER me 50.4 22 0.00048 29.4 3.7 11 96-106 151-161 (196)
39 PRK14473 F0F1 ATP synthase sub 50.3 39 0.00084 26.0 4.9 12 64-75 1-12 (164)
40 PF06103 DUF948: Bacterial pro 48.2 32 0.00068 23.9 3.7 31 88-118 22-52 (90)
41 PRK03625 tatE twin arginine tr 46.5 30 0.00064 24.1 3.3 29 91-122 22-50 (67)
42 PRK11901 hypothetical protein; 38.2 14 0.00031 32.9 0.8 10 62-71 35-44 (327)
43 PF04545 Sigma70_r4: Sigma-70, 34.3 72 0.0016 19.5 3.4 37 80-116 13-49 (50)
44 PRK14472 F0F1 ATP synthase sub 31.2 1.3E+02 0.0027 23.5 5.1 13 64-76 11-23 (175)
45 smart00786 SHR3_chaperone ER m 30.2 71 0.0015 26.6 3.6 11 96-106 151-161 (196)
46 PF09680 Tiny_TM_bacill: Prote 29.1 39 0.00086 19.3 1.4 16 72-87 6-21 (24)
47 PRK00191 tatA twin arginine tr 28.6 1.2E+02 0.0025 22.1 4.1 32 95-126 22-53 (84)
48 COG4792 EscU Type III secretor 28.1 97 0.0021 27.9 4.3 48 72-122 185-232 (349)
49 PF14654 Epiglycanin_C: Mucin, 27.2 45 0.00098 25.3 1.8 17 68-84 14-30 (106)
50 PRK04570 cell division protein 27.0 22 0.00048 30.5 0.2 29 64-92 4-33 (243)
51 PHA00426 type II holin 25.5 51 0.0011 23.1 1.7 21 65-85 28-48 (67)
52 PF13260 DUF4051: Protein of u 25.2 2.2E+02 0.0047 19.1 4.6 25 96-120 21-48 (54)
53 PRK11677 hypothetical protein; 24.9 89 0.0019 24.3 3.1 15 72-86 3-17 (134)
54 PF14181 YqfQ: YqfQ-like prote 24.3 36 0.00078 27.4 0.9 19 86-104 50-68 (161)
55 PRK13454 F0F1 ATP synthase sub 24.2 1.7E+02 0.0038 23.1 4.8 16 90-105 53-68 (181)
56 COG3105 Uncharacterized protei 21.9 1.7E+02 0.0037 23.2 4.2 22 71-92 7-35 (138)
57 PRK00720 tatA twin arginine tr 21.7 2.2E+02 0.0048 20.4 4.4 42 74-120 6-48 (78)
58 COG2165 PulG Type II secretory 21.6 2.1E+02 0.0046 20.0 4.4 32 68-100 9-40 (149)
59 PF06305 DUF1049: Protein of u 21.4 2.3E+02 0.0049 18.3 4.2 21 97-117 46-66 (68)
60 PRK00269 zipA cell division pr 21.2 63 0.0014 28.5 1.8 17 67-83 1-17 (293)
61 PF04420 CHD5: CHD5-like prote 20.9 1.7E+02 0.0037 22.8 4.1 35 84-118 16-59 (161)
62 smart00347 HTH_MARR helix_turn 20.8 2.5E+02 0.0054 18.3 4.4 45 67-113 6-50 (101)
63 COG1826 TatA Sec-independent p 20.4 1.3E+02 0.0029 21.5 3.1 44 74-117 12-56 (94)
64 PRK02958 tatA twin arginine tr 20.4 2.3E+02 0.0049 20.0 4.2 28 95-122 23-50 (73)
65 PF12911 OppC_N: N-terminal TM 20.2 41 0.0009 21.1 0.4 13 75-87 24-36 (56)
No 1
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=99.83 E-value=1.2e-20 Score=137.41 Aligned_cols=62 Identities=55% Similarity=0.967 Sum_probs=57.3
Q ss_pred ecccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 031919 64 YALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSETDP 125 (150)
Q Consensus 64 ~~MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~~~~ 125 (150)
+.||||||+||+||++|+||||||+|||+++|.+|+++|+||+++++++++++++.+.....
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~~~ 62 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFENEIKREMAEPEQE 62 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999999999999999999999999999999999887665544
No 2
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.8e-19 Score=130.82 Aligned_cols=54 Identities=50% Similarity=0.925 Sum_probs=51.2
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP 119 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~ 119 (150)
||++|||||+||++|++|||||+|||+++|++|+++|+||++++++++++..+.
T Consensus 1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~~e~~~~~ 54 (94)
T COG1826 1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVKNELDEEL 54 (94)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998886555
No 3
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=99.77 E-value=4e-19 Score=122.44 Aligned_cols=46 Identities=46% Similarity=0.979 Sum_probs=44.5
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF 111 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~ 111 (150)
|||+|||||++|++|+||||||+|||+++|++|+++|+||+++++.
T Consensus 1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~~ 46 (64)
T PRK14860 1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNEE 46 (64)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8999999999999999999999999999999999999999998873
No 4
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=99.77 E-value=3.8e-19 Score=122.19 Aligned_cols=47 Identities=49% Similarity=0.959 Sum_probs=44.8
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 112 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~ 112 (150)
|||+|++||++|++|+||||||+|||+++|++|+++|+||+++++.+
T Consensus 1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~~~ 47 (63)
T PRK14859 1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEKE 47 (63)
T ss_pred CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999988743
No 5
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=99.77 E-value=6.7e-19 Score=120.17 Aligned_cols=55 Identities=44% Similarity=0.804 Sum_probs=51.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
|+|+||+||++|++|+++||||+|||+++|++|+++|+||++.++++++..++.+
T Consensus 2 ~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~~~~~~~~~ 56 (61)
T PRK14861 2 FSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTDDDFQEKK 56 (61)
T ss_pred CCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 5689999999999999999999999999999999999999999999988875544
No 6
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=99.76 E-value=4.7e-19 Score=132.92 Aligned_cols=56 Identities=38% Similarity=0.884 Sum_probs=52.8
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
||||||+||+||++|+||||||+|||+++|.+|+++++||+++++++++++++.+.
T Consensus 1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d~k~~i~~E~~~ 56 (108)
T PRK14858 1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQSMQEESRT 56 (108)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888776654
No 7
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=99.76 E-value=1.5e-18 Score=127.06 Aligned_cols=57 Identities=33% Similarity=0.556 Sum_probs=53.4
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
|||||+|||+||++|+||||||+|||+++|++|+++|+||++.+++++|.+++.+..
T Consensus 1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~~e~~~~~~~~ 57 (92)
T PRK00575 1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQSDNKAEASAA 57 (92)
T ss_pred CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 899999999999999999999999999999999999999999999998888766554
No 8
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=99.76 E-value=6.6e-19 Score=127.00 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=62.3
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCccccccccccCcccc
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSETDPPGEKPTAISEERKDEGKISS 145 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~~~~~~e~~~~~~e~~k~~~~~S~ 145 (150)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+++++.+++-++...+.. ..+++....+.+...|.+...
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRNDDEVSTSVLGETK-MSAETKTVAETKAASDSQAAA 79 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccccccccccccccc-cchhhhhhhhhhccccccccc
Confidence 8999999999999999999999999999999999999999998885444444333322 223555555555556666655
Q ss_pred ccC
Q 031919 146 SKE 148 (150)
Q Consensus 146 S~e 148 (150)
|.|
T Consensus 80 ~~~ 82 (85)
T PRK01614 80 SVE 82 (85)
T ss_pred ccc
Confidence 554
No 9
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=99.75 E-value=7.6e-19 Score=127.79 Aligned_cols=48 Identities=33% Similarity=0.643 Sum_probs=45.5
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
|+|+|+|||+||++|+||||||+|||+++|+||+++|+||+++++.+.
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e~~~ 48 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEP 48 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence 889999999999999999999999999999999999999999887653
No 10
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=99.75 E-value=1.1e-18 Score=123.33 Aligned_cols=47 Identities=32% Similarity=0.644 Sum_probs=45.4
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 112 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~ 112 (150)
|+|+|+|||+||++|+||+|||+|||+++|++|+++|+||+++++.+
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~~ 47 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADDK 47 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999998865
No 11
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=99.75 E-value=1.1e-18 Score=121.12 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=46.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESE 114 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~e 114 (150)
|||+|||||+||++|+||||||+|||+++|++|+++|+||+++++.+++
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~~~~ 49 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAA 49 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8999999999999999999999999999999999999999988876544
No 12
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=99.75 E-value=1.8e-18 Score=124.09 Aligned_cols=48 Identities=40% Similarity=0.663 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
|+|+|+|||+||++|+||+|||+|||+++|+||+++|+||+++++.++
T Consensus 1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~~~~ 48 (81)
T PRK04598 1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSEEES 48 (81)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence 889999999999999999999999999999999999999999988653
No 13
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=99.75 E-value=1.9e-18 Score=121.82 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=46.3
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESEL 115 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~el 115 (150)
|+++|+|||+||++|+||||||+|||+++|++|+++|+||+++++.+++-
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~~~~~ 50 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEGETPQ 50 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccccccc
Confidence 78999999999999999999999999999999999999999998865433
No 14
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=99.74 E-value=4.4e-18 Score=112.78 Aligned_cols=51 Identities=49% Similarity=0.905 Sum_probs=42.3
Q ss_pred CChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 031919 69 LGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP 119 (150)
Q Consensus 69 iG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~ 119 (150)
||++||++|++|+++||||+|||+++|++|+++|+||++.++.+++.+++.
T Consensus 1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~~~~~~~ 51 (53)
T PF02416_consen 1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKEEIEKEA 51 (53)
T ss_dssp S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 699999999999999999999999999999999999999999999866554
No 15
>PRK00404 tatB sec-independent translocase; Provisional
Probab=99.74 E-value=3.4e-18 Score=133.41 Aligned_cols=55 Identities=27% Similarity=0.592 Sum_probs=51.5
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
||||||+||+||++|+||||||+|||+++|.+|+|+++||+++++.++|+.++.+
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~~~k~ei~~E~~ 55 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIKQEVEREIG 55 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999988877777654
No 16
>PRK01770 sec-independent translocase; Provisional
Probab=99.73 E-value=3.2e-18 Score=137.11 Aligned_cols=54 Identities=26% Similarity=0.567 Sum_probs=51.3
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP 119 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~ 119 (150)
|||||||||+||+||+||||||+|||+++|.+|+|+|+||++++++++++.++.
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~~~k~e~~~E~ 54 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQEL 54 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888777765
No 17
>PRK00708 sec-independent translocase; Provisional
Probab=99.73 E-value=3.1e-18 Score=140.77 Aligned_cols=57 Identities=33% Similarity=0.568 Sum_probs=54.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
|||||||||+||+||+||||||+|||+++|.+|+++++||++.++++++++++.++.
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~~~~e~~~~~ 57 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRRQFDEALREA 57 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999998876643
No 18
>PRK04098 sec-independent translocase; Provisional
Probab=99.73 E-value=3.9e-18 Score=135.14 Aligned_cols=56 Identities=36% Similarity=0.573 Sum_probs=53.2
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
|||||||||+||++||||||||+|||+++|.+|+++|+||+++++++++++++.+.
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~ 56 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKSTLDKEINI 56 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999888887743
No 19
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=99.73 E-value=7.7e-18 Score=123.29 Aligned_cols=56 Identities=34% Similarity=0.474 Sum_probs=50.7
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
|+++|||||+||++|+||||||+|||+++|++|+++|+||+++++.+++.......
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e~~~~~~~~~~~ 56 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNEDEKEDKPAEQP 56 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccccccccccccC
Confidence 78999999999999999999999999999999999999999999977666555444
No 20
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=99.73 E-value=4e-18 Score=121.35 Aligned_cols=55 Identities=36% Similarity=0.657 Sum_probs=52.8
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
|||||+|+++|++|+++||||+|||+++|.+|+++++||+++++++++++++.+.
T Consensus 1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~~~~~~~~e~~~ 55 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMASDVKNELDEELKA 55 (80)
T ss_pred CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhch
Confidence 7999999999999999999999999999999999999999999999999888763
No 21
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=99.71 E-value=6.9e-18 Score=109.71 Aligned_cols=46 Identities=52% Similarity=0.855 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 68 GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 68 giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
|+|+||+++|++|++++|||+|||+++|++|+++|+||+++++.++
T Consensus 1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~~ 46 (47)
T TIGR01411 1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEES 46 (47)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhcccc
Confidence 6899999999999999999999999999999999999999988654
No 22
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=99.71 E-value=7.4e-18 Score=119.30 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=46.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESEL 115 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~el 115 (150)
|+++|+|||+||++|+||+|||+|||+++|++|++++.||+++++.+.+.
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~~~~~ 50 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDDDKPA 50 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999999999999999888754433
No 23
>PRK01371 sec-independent translocase; Provisional
Probab=99.71 E-value=1e-17 Score=130.18 Aligned_cols=57 Identities=39% Similarity=0.747 Sum_probs=54.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
||||||+||++|++|+||||||+|||+++|++|+++|+||+++++++++++++....
T Consensus 1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~e 57 (137)
T PRK01371 1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNARNDLRSELGPE 57 (137)
T ss_pred CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999999999999999999999999999999998887543
No 24
>PRK04654 sec-independent translocase; Provisional
Probab=99.71 E-value=1.3e-17 Score=137.41 Aligned_cols=56 Identities=34% Similarity=0.573 Sum_probs=53.0
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
||||||+||+||+||+||||||+|||+++|.+|+|+|+||+.++++++|+.++.+.
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~~ 56 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEA 56 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999888877643
No 25
>PRK01919 tatB sec-independent translocase; Provisional
Probab=99.70 E-value=1.6e-17 Score=132.88 Aligned_cols=56 Identities=29% Similarity=0.545 Sum_probs=53.8
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDS 121 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e 121 (150)
||||||+||+||+|||||||||+|||+++|.+|+++++||++++++++|++++.+.
T Consensus 1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e~ 56 (169)
T PRK01919 1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYINDVKAEVSREIEL 56 (169)
T ss_pred CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 89999999999999999999999999999999999999999999999999988743
No 26
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=99.70 E-value=1.9e-17 Score=119.45 Aligned_cols=53 Identities=30% Similarity=0.565 Sum_probs=48.3
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP 119 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~ 119 (150)
+|+|+|||+||++|+||||||+|||+++|++|+++|+||+++++.+++..++.
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~d~~~~e 53 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSKDDQTPE 53 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 58999999999999999999999999999999999999999999876655443
No 27
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=99.70 E-value=3.3e-17 Score=116.79 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=45.3
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
|+|+|+|||+||++|+||+|||+|||++++++|+++++||+++++.+.
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~~~~ 48 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMADDDA 48 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence 889999999999999999999999999999999999999998887543
No 28
>PRK03100 sec-independent translocase; Provisional
Probab=99.69 E-value=2.5e-17 Score=127.78 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=51.7
Q ss_pred cc-CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 66 LF-GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 66 MF-giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
|| +|||+||+||+||+||||||+|||+++|++|+++|+||+++++++++++++..
T Consensus 1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~~~~~~elg 56 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGATSQLREELG 56 (136)
T ss_pred CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78 59999999999999999999999999999999999999999999988887664
No 29
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=99.68 E-value=2.7e-17 Score=108.89 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=43.1
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 112 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~ 112 (150)
+|+|+|||++|++|++++|||+|||+++|++|+++|+||+++++.+
T Consensus 1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~~~ 46 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKDDG 46 (51)
T ss_pred CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhcccc
Confidence 5899999999999999999999999999999999999999887743
No 30
>PRK00182 tatB sec-independent translocase; Provisional
Probab=99.66 E-value=9.1e-17 Score=127.61 Aligned_cols=55 Identities=20% Similarity=0.421 Sum_probs=51.3
Q ss_pred cc-CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 66 LF-GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 66 MF-giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
|| +|||+||+||+||+||||||+|||+++|.+|+++|+||+++++++++++.+..
T Consensus 1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~el~~Elg 56 (160)
T PRK00182 1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQQLDGDFG 56 (160)
T ss_pred CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78 59999999999999999999999999999999999999999998888777764
No 31
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=77.48 E-value=10 Score=27.73 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHhhhh-hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 031919 73 ELVVIAGVAAL-VFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSETDPPG 127 (150)
Q Consensus 73 ELiIIlvVaLL-VfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~~~~~~ 127 (150)
=|++|++|++= ===|+=.-.+++.++.+-+..+...++++.+.++........+.
T Consensus 13 iIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~~~~~~~~~ 68 (90)
T PRK14857 13 VILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFENEIKREMAEPEQEVKAPAE 68 (90)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 45555555552 11133344566776666666666666777777665555444443
No 32
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=69.25 E-value=19 Score=24.46 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred HHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 75 VVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 75 iIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
.++.+++-++|-|++=.++-+.+.+....+++...+..++..+
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677799999999999999999999998888877766544
No 33
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=62.01 E-value=23 Score=24.66 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031919 94 GKSIGKTVKSFQQAAKEFESEL 115 (150)
Q Consensus 94 aR~LGk~ir~fkk~~~e~~~el 115 (150)
.+.+++.+++.++.++++++++
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~ 42 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQV 42 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555555555444444
No 34
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=58.77 E-value=2.1 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=18.4
Q ss_pred eecccCCChHHHHHHHHhhhhhcCCCChhHHHHH
Q 031919 63 CYALFGLGVPELVVIAGVAALVFGPKKLPEVGKS 96 (150)
Q Consensus 63 ~~~MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~ 96 (150)
++.+++| -=|+||++.+.|+||-..=|.....
T Consensus 16 LNiaI~I--V~lLIiiva~~lf~~~~~~~~~~a~ 47 (217)
T PF07423_consen 16 LNIAIGI--VSLLIIIVAYQLFFGGDDSPAASAD 47 (217)
T ss_pred HHHHHHH--HHHHHHHHhhhheecCCCchhhhhc
Confidence 4554444 3466666666788876655554433
No 35
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=56.10 E-value=18 Score=25.34 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=24.8
Q ss_pred cccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHH
Q 031919 65 ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQ 106 (150)
Q Consensus 65 ~MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk 106 (150)
.|+|+++.||+.|+-++..++ +++-.+=+++++-|+
T Consensus 27 ~f~GLslneWfyiati~Ytvl------Qig~~v~k~v~~~kr 62 (66)
T PF10746_consen 27 YFWGLSLNEWFYIATIAYTVL------QIGYLVWKKVRDWKR 62 (66)
T ss_pred HHcCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 358999999999999998765 344444444444443
No 36
>PF13730 HTH_36: Helix-turn-helix domain
Probab=55.29 E-value=47 Score=20.54 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHhhhhhcCCC----ChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 68 GLGVPELVVIAGVAALVFGPK----KLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 68 giG~~ELiIIlvVaLLVfGPk----KLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
++++.+..|.+.++-..-+.. -...++..+|-..+.+++.++++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEE 51 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567778888777776653332 3678999999999999999988764
No 37
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=53.15 E-value=19 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=17.6
Q ss_pred hhcCCCChhHHHHHHHHHH
Q 031919 83 LVFGPKKLPEVGKSIGKTV 101 (150)
Q Consensus 83 LVfGPkKLP~laR~LGk~i 101 (150)
++|++.|.|++.+.+||++
T Consensus 25 ~if~~~~ppq~v~~lgk~l 43 (106)
T COG1687 25 LIFKSGRPPQFVGYLGKVL 43 (106)
T ss_pred HhcCCCCchHHHHHHHHhc
Confidence 5899999999999999986
No 38
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=50.39 E-value=22 Score=29.40 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 031919 96 SIGKTVKSFQQ 106 (150)
Q Consensus 96 ~LGk~ir~fkk 106 (150)
..|+|+-+-.+
T Consensus 151 QaG~~YAe~~~ 161 (196)
T PF08229_consen 151 QAGQWYAERKD 161 (196)
T ss_pred HhhHHHHhhhh
Confidence 67888855443
No 39
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=50.33 E-value=39 Score=25.99 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=8.6
Q ss_pred ecccCCChHHHH
Q 031919 64 YALFGLGVPELV 75 (150)
Q Consensus 64 ~~MFgiG~~ELi 75 (150)
+.|||+.|+-++
T Consensus 1 ~~~~~~~~~~~~ 12 (164)
T PRK14473 1 MEKLGINLGLLI 12 (164)
T ss_pred CCcccCcHHHHH
Confidence 358999887654
No 40
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.17 E-value=32 Score=23.95 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031919 88 KKLPEVGKSIGKTVKSFQQAAKEFESELKKE 118 (150)
Q Consensus 88 kKLP~laR~LGk~ir~fkk~~~e~~~elk~e 118 (150)
+++-+..+.+-+.++.+++..+++..|..+-
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~l 52 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDL 52 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5777777778888888887777776666543
No 41
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=46.55 E-value=30 Score=24.07 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 91 PEVGKSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 91 P~laR~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
|+=.+.+|+.+++.. +++++.++++.++.
T Consensus 22 pkKLp~lg~~lGk~i---~~Fk~~~~~~~~~~ 50 (67)
T PRK03625 22 TKKLRTLGGDLGAAI---KGFKKAMNDDDAAA 50 (67)
T ss_pred ccHHHHHHHHHHHHH---HHHHHHhcccccch
Confidence 333467777777666 55555555554443
No 42
>PRK11901 hypothetical protein; Reviewed
Probab=38.20 E-value=14 Score=32.88 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=7.7
Q ss_pred ceecccCCCh
Q 031919 62 TCYALFGLGV 71 (150)
Q Consensus 62 ~~~~MFgiG~ 71 (150)
..++|+|||.
T Consensus 35 RQh~MiGiGi 44 (327)
T PRK11901 35 RQHMMIGIGI 44 (327)
T ss_pred HHHHHHHHHH
Confidence 3578999984
No 43
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.25 E-value=72 Score=19.50 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=28.1
Q ss_pred hhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031919 80 VAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELK 116 (150)
Q Consensus 80 VaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk 116 (150)
+.+.++....+-++|+.+|-.....++..+..-+.++
T Consensus 13 i~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~kLR 49 (50)
T PF04545_consen 13 IRLRYFEGLTLEEIAERLGISRSTVRRILKRALKKLR 49 (50)
T ss_dssp HHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHHHhc
Confidence 3444588899999999999999888887777665554
No 44
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.22 E-value=1.3e+02 Score=23.48 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=8.4
Q ss_pred ecccCCChHHHHH
Q 031919 64 YALFGLGVPELVV 76 (150)
Q Consensus 64 ~~MFgiG~~ELiI 76 (150)
+.||++.++.+++
T Consensus 11 ~~~~~~~~~~~~~ 23 (175)
T PRK14472 11 GGLLSPNPGLIFW 23 (175)
T ss_pred CCccCCCHHHHHH
Confidence 4588888755533
No 45
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=30.19 E-value=71 Score=26.60 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 031919 96 SIGKTVKSFQQ 106 (150)
Q Consensus 96 ~LGk~ir~fkk 106 (150)
..|+|+-+-++
T Consensus 151 QaG~wYAer~~ 161 (196)
T smart00786 151 QAGLWYAERKD 161 (196)
T ss_pred HhhHHHHHHhH
Confidence 56777765444
No 46
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.09 E-value=39 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhhcCC
Q 031919 72 PELVVIAGVAALVFGP 87 (150)
Q Consensus 72 ~ELiIIlvVaLLVfGP 87 (150)
.-+++++.+.|+++|.
T Consensus 6 FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 6 FALIVVLFILLIIVGA 21 (24)
T ss_pred chhHHHHHHHHHHhcc
Confidence 4567777777788774
No 47
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=28.56 E-value=1.2e+02 Score=22.13 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 031919 95 KSIGKTVKSFQQAAKEFESELKKEPDSETDPP 126 (150)
Q Consensus 95 R~LGk~ir~fkk~~~e~~~elk~e~~e~~~~~ 126 (150)
+.|-...|.+-+.+++++++++...++..+..
T Consensus 22 ~KLP~~~r~lGk~ir~FK~~~~~~~~d~~~~e 53 (84)
T PRK00191 22 KKLPDAARSIGRSMRIFKSEVKEMSKDDQTPE 53 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 55666667777777777777766655544433
No 48
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=28.09 E-value=97 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 72 PELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 72 ~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
..+.+.+.++.++|| +-+++=.=-+.+|++|=-.+|+++|.++...++
T Consensus 185 ~~L~~g~~~~ylv~s---v~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~P 232 (349)
T COG4792 185 RLLWVGVAVGYLVFS---VADYAFQRYQILKELKMSKDEVKREYKDMEGDP 232 (349)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCHHHHHHHHhcccCCc
Confidence 345556678888888 666666666777777777777777776655443
No 49
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=27.19 E-value=45 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhhh
Q 031919 68 GLGVPELVVIAGVAALV 84 (150)
Q Consensus 68 giG~~ELiIIlvVaLLV 84 (150)
.+-+|||++|-++++++
T Consensus 14 sL~PWeIfLItLasVvv 30 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVV 30 (106)
T ss_pred CccchHHHHHHHHHHHH
Confidence 47799999999887764
No 50
>PRK04570 cell division protein ZipA; Provisional
Probab=27.00 E-value=22 Score=30.50 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=21.2
Q ss_pred ecccCCChHHHHHHHHhhhhhcC-CCChhH
Q 031919 64 YALFGLGVPELVVIAGVAALVFG-PKKLPE 92 (150)
Q Consensus 64 ~~MFgiG~~ELiIIlvVaLLVfG-PkKLP~ 92 (150)
+.|+-||..-..++++.++++|| |||-|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (243)
T PRK04570 4 MAMLRIGILIAGLLLVAAIFLFGRPKKSPQ 33 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 34566777777788888999999 566554
No 51
>PHA00426 type II holin
Probab=25.49 E-value=51 Score=23.11 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.3
Q ss_pred cccCCChHHHHHHHHhhhhhc
Q 031919 65 ALFGLGVPELVVIAGVAALVF 85 (150)
Q Consensus 65 ~MFgiG~~ELiIIlvVaLLVf 85 (150)
.+|||++.||+.|+.++.-|+
T Consensus 28 ~F~Glsl~~WfyvAai~YTVv 48 (67)
T PHA00426 28 LFFGLSLNEWFYVAAIAYTVV 48 (67)
T ss_pred HHhcccHHHHHHHHHHHHHHH
Confidence 466999999999999887543
No 52
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=25.18 E-value=2.2e+02 Score=19.09 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=12.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHhhhCCC
Q 031919 96 SIGKTVKSFQ---QAAKEFESELKKEPD 120 (150)
Q Consensus 96 ~LGk~ir~fk---k~~~e~~~elk~e~~ 120 (150)
.+-+.-|.|| .+.-+.++.+.+..+
T Consensus 21 hmkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 21 HMKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 3444444444 455556655554443
No 53
>PRK11677 hypothetical protein; Provisional
Probab=24.89 E-value=89 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhcC
Q 031919 72 PELVVIAGVAALVFG 86 (150)
Q Consensus 72 ~ELiIIlvVaLLVfG 86 (150)
|.+++|++|+-+++|
T Consensus 3 W~~a~i~livG~iiG 17 (134)
T PRK11677 3 WEYALIGLVVGIIIG 17 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555444444
No 54
>PF14181 YqfQ: YqfQ-like protein
Probab=24.34 E-value=36 Score=27.40 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=9.0
Q ss_pred CCCChhHHHHHHHHHHHHH
Q 031919 86 GPKKLPEVGKSIGKTVKSF 104 (150)
Q Consensus 86 GPkKLP~laR~LGk~ir~f 104 (150)
||..|..+..++=|+++-.
T Consensus 50 ~~~~l~~mL~N~QKvl~va 68 (161)
T PF14181_consen 50 SPASLSGMLNNVQKVLGVA 68 (161)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 4455555554444444433
No 55
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.20 E-value=1.7e+02 Score=23.10 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 031919 90 LPEVGKSIGKTVKSFQ 105 (150)
Q Consensus 90 LP~laR~LGk~ir~fk 105 (150)
+|.+.+.+-+--..++
T Consensus 53 ~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 53 LPRIGAVLAERQGTIT 68 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666665554444333
No 56
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.87 E-value=1.7e+02 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhhhhc-------CCCChhH
Q 031919 71 VPELVVIAGVAALVF-------GPKKLPE 92 (150)
Q Consensus 71 ~~ELiIIlvVaLLVf-------GPkKLP~ 92 (150)
.|+..+|.+|+-|++ ++.++|.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 467777766665554 4566654
No 57
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=21.71 E-value=2.2e+02 Score=20.38 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHhhhhhcCCCChhHH-HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 74 LVVIAGVAALVFGPKKLPEV-GKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 74 LiIIlvVaLLVfGPkKLP~l-aR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
+.=++||+++++= -+ .+.|-...+.+=+.++++++.+++...
T Consensus 6 ~~ellIIlvIvll-----lFG~kKLP~l~~~lGk~ik~FKk~~~~~~~ 48 (78)
T PRK00720 6 IWHWLIVLAVVLL-----LFGRGKISELMGDVAKGIKSFKKGMADDDA 48 (78)
T ss_pred HHHHHHHHHHHHH-----HhCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence 3445666666642 12 245666677777788888877777654
No 58
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.65 E-value=2.1e+02 Score=19.98 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHH
Q 031919 68 GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKT 100 (150)
Q Consensus 68 giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ 100 (150)
|+-.-|++|+++|+-++.. -=+|.+.....+.
T Consensus 9 GFTLiElLVvl~Iigil~~-~~~p~~~~~~~~~ 40 (149)
T COG2165 9 GFTLIELLVVLAIIGILAA-LALPSLQGSIDKA 40 (149)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 5556687776665544332 3345555544444
No 59
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.39 E-value=2.3e+02 Score=18.26 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 031919 97 IGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 97 LGk~ir~fkk~~~e~~~elk~ 117 (150)
..+.++..++..++.+.|+++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666553
No 60
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=21.15 E-value=63 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.647 Sum_probs=11.4
Q ss_pred cCCChHHHHHHHHhhhh
Q 031919 67 FGLGVPELVVIAGVAAL 83 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLL 83 (150)
++||+-||+||+.+++|
T Consensus 1 m~~~l~~~livig~i~i 17 (293)
T PRK00269 1 MEIGLREWLIVIGIIVI 17 (293)
T ss_pred CccchhhHHHHHHHHHH
Confidence 46788888777665443
No 61
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.88 E-value=1.7e+02 Score=22.84 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=16.8
Q ss_pred hcCCCChhHHH---------HHHHHHHHHHHHHHHHHHHHhhhC
Q 031919 84 VFGPKKLPEVG---------KSIGKTVKSFQQAAKEFESELKKE 118 (150)
Q Consensus 84 VfGPkKLP~la---------R~LGk~ir~fkk~~~e~~~elk~e 118 (150)
.+|+..+.+++ ....+-.++.|++..++++|++.-
T Consensus 16 ~ig~~~i~~~~~~l~~~~~~~~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 16 TIGKSYIDNWLWRLYLKLPSSKSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hccHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHcC
Confidence 56788888876 455666777778888888877765
No 62
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=20.80 E-value=2.5e+02 Score=18.33 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
+|++..++.++.++.- -|+-...++++.++-.-..+.+.++++.+
T Consensus 6 ~~l~~~~~~il~~l~~--~~~~~~~~la~~~~~s~~~i~~~l~~L~~ 50 (101)
T smart00347 6 LGLTPTQFLVLRILYE--EGPLSVSELAKRLGVSPSTVTRVLDRLEK 50 (101)
T ss_pred cCCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 5788888877776664 46668888888888766677777777654
No 63
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=20.38 E-value=1.3e+02 Score=21.48 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 74 LVVIAGVAALVFG-PKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 74 LiIIlvVaLLVfG-PkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
+++|++|++===- |+=.-.+++.++.+-+..+...++.+.+++.
T Consensus 12 IlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~~e~~~~~~~ 56 (94)
T COG1826 12 ILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVKNELDEELKL 56 (94)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 4444444442111 3444567777777777777777776666644
No 64
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=20.35 E-value=2.3e+02 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031919 95 KSIGKTVKSFQQAAKEFESELKKEPDSE 122 (150)
Q Consensus 95 R~LGk~ir~fkk~~~e~~~elk~e~~e~ 122 (150)
+.|-..-|.+=++++++++.+++..++.
T Consensus 23 kKLPelgr~lGkair~FK~~~~~~~~~~ 50 (73)
T PRK02958 23 KKLRNIGSDLGGAVKGFKDGMKEGETPQ 50 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4455555666667777777666654443
No 65
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.20 E-value=41 Score=21.12 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=6.3
Q ss_pred HHHHHhhhhhcCC
Q 031919 75 VVIAGVAALVFGP 87 (150)
Q Consensus 75 iIIlvVaLLVfGP 87 (150)
++++++++.+|||
T Consensus 24 il~~~vl~ai~~p 36 (56)
T PF12911_consen 24 ILLILVLLAIFAP 36 (56)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455554
Done!