Query 031919
Match_columns 150
No_of_seqs 141 out of 1195
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l16_A SEC-independent protein 99.8 1.7E-20 6E-25 132.3 6.4 56 65-120 1-56 (78)
2 2cqq_A RSGI RUH-037, DNAJ homo 59.9 7.5 0.00026 25.9 3.0 39 77-115 18-59 (72)
3 1gp7_A Phospholipase A2; snake 33.9 13 0.00044 28.1 1.0 35 70-104 2-36 (151)
4 2gxg_A 146AA long hypothetical 31.6 48 0.0016 22.4 3.6 46 66-114 32-77 (146)
5 2cjj_A Radialis; plant develop 28.5 37 0.0013 23.6 2.5 39 78-116 19-61 (93)
6 2o8x_A Probable RNA polymerase 25.1 81 0.0028 18.7 3.5 50 68-120 15-64 (70)
7 2lfw_A PHYR sigma-like domain; 18.2 1.5E+02 0.0053 20.7 4.3 56 68-126 93-148 (157)
8 3oop_A LIN2960 protein; protei 17.6 1.3E+02 0.0045 20.2 3.6 45 67-113 33-77 (143)
9 3hug_A RNA polymerase sigma fa 17.1 1.4E+02 0.0048 19.2 3.6 34 84-117 50-83 (92)
10 2vn2_A DNAD, chromosome replic 16.9 1.2E+02 0.004 21.2 3.3 46 67-113 28-77 (128)
No 1
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=99.81 E-value=1.7e-20 Score=132.27 Aligned_cols=56 Identities=38% Similarity=0.717 Sum_probs=49.8
Q ss_pred cccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 65 ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 65 ~MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
+|||||+|||+||++|+||||||+|||+++|++|+++|+||+++++++++.+++.+
T Consensus 1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~ 56 (78)
T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEK 56 (78)
T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhh
Confidence 37999999999999999999999999999999999999999999999988765443
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.86 E-value=7.5 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHhhhhhcC---CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031919 77 IAGVAALVFG---PKKLPEVGKSIGKTVKSFQQAAKEFESEL 115 (150)
Q Consensus 77 IlvVaLLVfG---PkKLP~laR~LGk~ir~fkk~~~e~~~el 115 (150)
.+.=+|..|+ |+|.-.+|..+||+.++.++..+.+.++.
T Consensus 18 ~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 18 QLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3444566787 78999999999999999999888876664
No 3
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=33.87 E-value=13 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=4.3
Q ss_pred ChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHH
Q 031919 70 GVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSF 104 (150)
Q Consensus 70 G~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~f 104 (150)
.+.+|+++++|.+.++|...+|..-|.+-+.-+-+
T Consensus 2 ~~~~ll~~~~v~v~ll~~~~~~~~~~~l~qf~~MI 36 (151)
T 1gp7_A 2 NPAHLLVLSAVCVSLLGASSIPPQPLHLIQFGNMI 36 (151)
T ss_dssp --------------------------CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHH
Confidence 46688888888999999888888777665444333
No 4
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=31.65 E-value=48 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.2
Q ss_pred ccCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 031919 66 LFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESE 114 (150)
Q Consensus 66 MFgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~e 114 (150)
-+|++..++.++..+. -||-..-++++.+|-.-..+.+.++.+++.
T Consensus 32 ~~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TTTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 3678999998887765 788899999999887777777777776543
No 5
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=28.50 E-value=37 Score=23.64 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHhhhhhcC---CCChhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 031919 78 AGVAALVFG---PKKLPEVGKSI-GKTVKSFQQAAKEFESELK 116 (150)
Q Consensus 78 lvVaLLVfG---PkKLP~laR~L-Gk~ir~fkk~~~e~~~elk 116 (150)
+.-++..+| |.+.-.+|+.+ ||+.++.++-.+.+.++++
T Consensus 19 L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 19 FERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 334455677 88999999999 5888888887777765553
No 6
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.09 E-value=81 Score=18.74 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 031919 68 GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD 120 (150)
Q Consensus 68 giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~ 120 (150)
.+..-+--++. +..+......++|..+|-....+++....+...+++...
T Consensus 15 ~L~~~~r~il~---l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALL---LTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHH---HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHH---HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 35554443332 333555899999999999999888888888888877654
No 7
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=18.18 E-value=1.5e+02 Score=20.68 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 031919 68 GLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSETDPP 126 (150)
Q Consensus 68 giG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~e~~e~~~~~ 126 (150)
.+...+=-+ +.+..+.--...++|..+|-..+..+..+......+++.........
T Consensus 93 ~Lp~~~r~v---l~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~~~~ 148 (157)
T 2lfw_A 93 RMTPLSRQA---LLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVP 148 (157)
T ss_dssp TSCTTHHHH---HTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred hCCHHHHHH---HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 355544432 23445666899999999999999999988888888888776544443
No 8
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=17.62 E-value=1.3e+02 Score=20.15 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=35.4
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
+|+++.++.++..+.-- ||-..-++++.+|-.-..+-+.++.+++
T Consensus 33 ~~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 57899999887776543 8889999999998777777777776654
No 9
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=17.06 E-value=1.4e+02 Score=19.17 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=24.6
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 84 VFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 84 VfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
++.-....++|..+|-..+.++.....+...+++
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4666889999999988887777666655555443
No 10
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=16.87 E-value=1.2e+02 Score=21.23 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHhhhh----hcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAAL----VFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLL----VfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
+|+...|+.+++.+.-. ..+| ..-++|+.+|-..+...+.++...+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~p-s~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFP-TPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSC-CHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58889999866666544 2223 6778999999999999998888764
Done!