Query 031919
Match_columns 150
No_of_seqs 141 out of 1195
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 11:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031919.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031919hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 17.1 89 0.0065 19.2 4.4 28 71-99 3-30 (158)
2 d2a61a1 a.4.5.28 (A:5-143) Tra 16.6 71 0.0052 20.4 3.8 45 67-113 26-70 (139)
3 d1lnwa_ a.4.5.28 (A:) MexR rep 15.8 81 0.0059 20.3 4.0 45 67-113 32-76 (141)
4 d1sfxa_ a.4.5.50 (A:) Hypothet 15.8 93 0.0068 19.4 4.2 45 67-113 16-60 (109)
5 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 14.0 36 0.0026 20.4 1.5 39 79-117 13-54 (59)
6 d2axti1 f.23.37.1 (I:1-35) Pho 12.4 30 0.0022 19.1 0.6 13 74-86 10-22 (35)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 12.3 53 0.0039 18.2 1.7 14 71-84 18-31 (37)
8 d1rp3a2 a.4.13.2 (A:164-234) S 9.4 1.3E+02 0.0095 16.8 3.0 37 81-117 31-67 (71)
9 d1m56d_ f.23.8.1 (D:) Bacteria 9.4 72 0.0052 18.1 1.7 15 71-85 22-36 (42)
10 d1or7a1 a.4.13.2 (A:120-187) S 9.2 1.3E+02 0.0098 16.9 3.1 38 80-117 27-64 (68)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=17.11 E-value=89 Score=19.23 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=16.2
Q ss_pred hHHHHHHHHhhhhhcCCCChhHHHHHHHH
Q 031919 71 VPELVVIAGVAALVFGPKKLPEVGKSIGK 99 (150)
Q Consensus 71 ~~ELiIIlvVaLLVfGPkKLP~laR~LGk 99 (150)
.-||+|+++|+-|+-+ =-+|.+.+..-+
T Consensus 3 LIELlVViaIIgILaa-ia~P~~~~~~~~ 30 (158)
T d2pila_ 3 LIELMIVIAIVGILAA-VALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4577777665554433 127877665544
No 2
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=16.65 E-value=71 Score=20.40 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=35.9
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
+|+.+.++.++..|. --||-...++++.+|-.-..+-+.++.++.
T Consensus 26 ~glt~~q~~iL~~i~--~~~~~t~~~la~~l~i~~~tvs~~l~~L~~ 70 (139)
T d2a61a1 26 FGITPAQFDILQKIY--FEGPKRPGELSVLLGVAKSTVTGLVKRLEA 70 (139)
T ss_dssp HTCCHHHHHHHHHHH--HHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HcCCCCHHHHHHHhCCCcccchHHHHHHHh
Confidence 478999999888885 468999999999988777777777766543
No 3
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.78 E-value=81 Score=20.27 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=35.4
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
+|+++.|+.++..+. -.++-...++++.++..-..+.+.++.+++
T Consensus 32 ~~lt~~q~~vL~~l~--~~~~~t~~~la~~l~~~~~~vsr~l~~L~~ 76 (141)
T d1lnwa_ 32 LDLTPPDVHVLKLID--EQRGLNLQDLGRQMCRDKALITRKIRELEG 76 (141)
T ss_dssp CCCCHHHHHHHHHHH--SSTTCBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--HCCCCCHHHHHHHHCccHhHHHHHHHHHHH
Confidence 588999999998775 467778999999888777777777776654
No 4
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.75 E-value=93 Score=19.37 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=35.9
Q ss_pred cCCChHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031919 67 FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 113 (150)
Q Consensus 67 FgiG~~ELiIIlvVaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~ 113 (150)
||+...|+-++..+ +--||-..-++++.+|-.-......++.+++
T Consensus 16 lGlt~~e~~v~~~L--~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~ 60 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLL--LERGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp TCCCHHHHHHHHHH--HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH--HhcCCCCHHHHHHHhCCCcchHHHHHHHHHh
Confidence 78888888877665 4679999999999998777777777776653
No 5
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.98 E-value=36 Score=20.39 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=29.4
Q ss_pred HhhhhhcC---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 79 GVAALVFG---PKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 79 vVaLLVfG---PkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
.-||..|. |+|.=.++..+||...+..+..+++++.+..
T Consensus 13 e~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~e~~~~ 54 (59)
T d2cqqa1 13 TRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDSVTC 54 (59)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHHHhccc
Confidence 34455554 6788899999999998888888887766543
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.42 E-value=30 Score=19.12 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhcC
Q 031919 74 LVVIAGVAALVFG 86 (150)
Q Consensus 74 LiIIlvVaLLVfG 86 (150)
.++++.|.+.+||
T Consensus 10 ~vV~fFv~lFiFG 22 (35)
T d2axti1 10 IVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4567777888887
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.29 E-value=53 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=10.0
Q ss_pred hHHHHHHHHhhhhh
Q 031919 71 VPELVVIAGVAALV 84 (150)
Q Consensus 71 ~~ELiIIlvVaLLV 84 (150)
.|.+++|+++++++
T Consensus 18 y~GlLlifvl~vLF 31 (37)
T d2axtl1 18 YLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36778888877764
No 8
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=9.36 E-value=1.3e+02 Score=16.80 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 81 AALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 81 aLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
.+..+.--..-++|..+|-....++.........+++
T Consensus 31 ~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 31 QLIFYEELPAKEVAKILETSVSRVSQLKAKALERLRE 67 (71)
T ss_dssp HHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445666788888888888887777766666655543
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.36 E-value=72 Score=18.13 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=7.8
Q ss_pred hHHHHHHHHhhhhhc
Q 031919 71 VPELVVIAGVAALVF 85 (150)
Q Consensus 71 ~~ELiIIlvVaLLVf 85 (150)
|.-+..|++|++++|
T Consensus 22 ~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 22 MVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 10
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=1.3e+02 Score=16.90 Aligned_cols=38 Identities=5% Similarity=0.046 Sum_probs=27.1
Q ss_pred hhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031919 80 VAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKK 117 (150)
Q Consensus 80 VaLLVfGPkKLP~laR~LGk~ir~fkk~~~e~~~elk~ 117 (150)
+.+-.|.-....++|+.+|-..+..+.........+++
T Consensus 27 ~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 27 ITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 64 (68)
T ss_dssp HHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34556666889999999888887777766666555543
Done!