Your job contains 1 sequence.
>031921
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGRQTKGIGRGLDD
GGAKGAGGGRGRGGPGGKPGGSRGGGRSRG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031921
(150 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180295 - symbol:emb1644 "AT5G27720" species:3... 483 4.8e-46 1
FB|FBgn0032240 - symbol:CG17768 species:7227 "Drosophila ... 414 9.9e-39 1
ZFIN|ZDB-GENE-040426-1652 - symbol:lsm4 "LSM4 homolog, U6... 408 4.3e-38 1
MGI|MGI:1354692 - symbol:Lsm4 "LSM4 homolog, U6 small nuc... 407 5.5e-38 1
UNIPROTKB|Q3ZBK6 - symbol:LSM4 "U6 snRNA-associated Sm-li... 405 8.9e-38 1
UNIPROTKB|Q9Y4Z0 - symbol:LSM4 "U6 snRNA-associated Sm-li... 405 8.9e-38 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 339 8.8e-31 1
DICTYBASE|DDB_G0287053 - symbol:lsm4 "putative U6 small n... 336 1.8e-30 1
WB|WBGene00003078 - symbol:lsm-4 species:6239 "Caenorhabd... 332 4.9e-30 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 313 5.0e-28 1
UNIPROTKB|G4MT14 - symbol:MGG_01509 "Glycine rich protein... 284 5.9e-25 1
SGD|S000000914 - symbol:LSM4 "Lsm (Like Sm) protein" spec... 169 9.1e-13 1
UNIPROTKB|G4NGM8 - symbol:MGG_04083 "Small nuclear ribonu... 159 1.0e-11 1
DICTYBASE|DDB_G0273003 - symbol:snrpD3 "putative small nu... 156 2.2e-11 1
SGD|S000004137 - symbol:SMD3 "Core Sm protein Sm D3" spec... 155 2.8e-11 1
POMBASE|SPBC19C2.14 - symbol:smd3 "Sm snRNP core protein ... 150 9.4e-11 1
TAIR|locus:2030442 - symbol:AT1G20580 "AT1G20580" species... 150 9.4e-11 1
ASPGD|ASPL0000047555 - symbol:AN2007 species:162425 "Emer... 147 2.0e-10 1
CGD|CAL0005718 - symbol:SMD3 species:5476 "Candida albica... 144 4.1e-10 1
TAIR|locus:2014589 - symbol:SmD3 "AT1G76300" species:3702... 144 4.1e-10 1
WB|WBGene00004914 - symbol:snr-1 species:6239 "Caenorhabd... 132 7.6e-09 1
UNIPROTKB|Q5ZL58 - symbol:SNRPD3 "Uncharacterized protein... 130 1.2e-08 1
UNIPROTKB|F1MZ00 - symbol:SNRPD3 "Uncharacterized protein... 130 1.2e-08 1
UNIPROTKB|B4DJP7 - symbol:SNRPD3 "Small nuclear ribonucle... 130 1.2e-08 1
UNIPROTKB|P62318 - symbol:SNRPD3 "Small nuclear ribonucle... 130 1.2e-08 1
UNIPROTKB|F2Z4Y0 - symbol:SNRPD3 "Uncharacterized protein... 130 1.2e-08 1
UNIPROTKB|P62323 - symbol:snrpd3 "Small nuclear ribonucle... 130 1.2e-08 1
MGI|MGI:1914582 - symbol:Snrpd3 "small nuclear ribonucleo... 130 1.2e-08 1
ZFIN|ZDB-GENE-030131-5219 - symbol:snrpd3l "small nuclear... 130 1.2e-08 1
ZFIN|ZDB-GENE-040625-55 - symbol:snrpd3 "small nuclear ri... 129 1.6e-08 1
FB|FBgn0023167 - symbol:SmD3 "Small ribonucleoprotein par... 125 4.2e-08 1
UNIPROTKB|E1BY33 - symbol:LSM10 "Uncharacterized protein"... 125 4.2e-08 1
WB|WBGene00001808 - symbol:gut-2 species:6239 "Caenorhabd... 118 2.3e-07 1
DICTYBASE|DDB_G0281779 - symbol:lsm2 "putative U6 small n... 116 3.8e-07 1
CGD|CAL0000979 - symbol:orf19.7673 species:5476 "Candida ... 113 7.8e-07 1
UNIPROTKB|A6QQV3 - symbol:LSM2 "LSM2 protein" species:991... 111 1.3e-06 1
UNIPROTKB|Q9Y333 - symbol:LSM2 "U6 snRNA-associated Sm-li... 111 1.3e-06 1
MGI|MGI:90676 - symbol:Lsm2 "LSM2 homolog, U6 small nucle... 111 1.3e-06 1
ZFIN|ZDB-GENE-000616-10 - symbol:smx5 "smx5" species:7955... 111 1.3e-06 1
UNIPROTKB|F1NLM5 - symbol:SNRPD1 "Uncharacterized protein... 109 2.1e-06 1
UNIPROTKB|Q969L4 - symbol:LSM10 "U7 snRNA-associated Sm-l... 109 2.1e-06 1
FB|FBgn0261933 - symbol:SmD1 "Small ribonucleoprotein par... 108 2.6e-06 1
WB|WBGene00004916 - symbol:snr-3 species:6239 "Caenorhabd... 107 3.4e-06 1
UNIPROTKB|A4IFN1 - symbol:LSM10 "Uncharacterized protein"... 106 4.3e-06 1
UNIPROTKB|Q3ZC10 - symbol:SNRPD1 "Small nuclear ribonucle... 105 5.5e-06 1
UNIPROTKB|E2R7Q3 - symbol:LSM10 "Uncharacterized protein"... 105 5.5e-06 1
UNIPROTKB|E2RIW7 - symbol:SNRPD1 "Uncharacterized protein... 105 5.5e-06 1
UNIPROTKB|P62314 - symbol:SNRPD1 "Small nuclear ribonucle... 105 5.5e-06 1
UNIPROTKB|F2Z5G9 - symbol:SNRPD1 "Uncharacterized protein... 105 5.5e-06 1
MGI|MGI:98344 - symbol:Snrpd1 "small nuclear ribonucleopr... 105 5.5e-06 1
RGD|1306345 - symbol:Snrpd1 "small nuclear ribonucleoprot... 105 5.5e-06 1
SGD|S000000122 - symbol:LSM2 "Lsm (Like Sm) protein" spec... 104 7.0e-06 1
TAIR|locus:2014480 - symbol:LSM2 "AT1G03330" species:3702... 104 7.0e-06 1
ZFIN|ZDB-GENE-020419-14 - symbol:snrpd1 "small nuclear ri... 104 7.0e-06 1
POMBASE|SPAC27D7.07c - symbol:smd1 "Sm snRNP core protein... 103 9.0e-06 1
MGI|MGI:2151045 - symbol:Lsm10 "U7 snRNP-specific Sm-like... 100 1.9e-05 1
RGD|1584914 - symbol:Lsm10 "LSM10, U7 small nuclear RNA a... 100 1.9e-05 1
GENEDB_PFALCIPARUM|PF13_0142 - symbol:PF13_0142 "u6 snRNA... 96 5.0e-05 1
UNIPROTKB|Q8IE68 - symbol:PF13_0142 "Lsm6 homologue, puta... 96 5.0e-05 1
TAIR|locus:2091102 - symbol:AT3G07590 "AT3G07590" species... 96 5.0e-05 1
ZFIN|ZDB-GENE-040930-9 - symbol:snrpf "small nuclear ribo... 96 5.0e-05 1
UNIPROTKB|F1P4B8 - symbol:SNRPF "Uncharacterized protein"... 95 6.3e-05 1
UNIPROTKB|Q3T0Z8 - symbol:SNRPF "Small nuclear ribonucleo... 95 6.3e-05 1
UNIPROTKB|F1Q0L5 - symbol:SNRPF "Uncharacterized protein"... 95 6.3e-05 1
UNIPROTKB|P62306 - symbol:SNRPF "Small nuclear ribonucleo... 95 6.3e-05 1
UNIPROTKB|F1SQR4 - symbol:SNRPF "Uncharacterized protein"... 95 6.3e-05 1
MGI|MGI:1917128 - symbol:Snrpf "small nuclear ribonucleop... 95 6.3e-05 1
RGD|1588229 - symbol:Snrpf "small nuclear ribonucleoprote... 95 6.3e-05 1
FB|FBgn0000426 - symbol:SmF "Small ribonucleoprotein part... 94 8.1e-05 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 94 8.1e-05 1
ASPGD|ASPL0000048203 - symbol:smd1 species:162425 "Emeric... 93 0.00010 1
DICTYBASE|DDB_G0278027 - symbol:snrpD1 "putative small nu... 93 0.00010 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 92 0.00013 1
UNIPROTKB|G4MTQ6 - symbol:MGG_04741 "Small nuclear ribonu... 89 0.00027 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 88 0.00035 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 88 0.00035 1
TAIR|locus:2043969 - symbol:LSM6B "AT2G43810" species:370... 88 0.00035 1
ASPGD|ASPL0000065787 - symbol:AN10963 species:162425 "Eme... 87 0.00045 1
POMBASE|SPCC1620.01c - symbol:lsm2 "U6 snRNP-associated p... 86 0.00057 1
DICTYBASE|DDB_G0275719 - symbol:lsm6 "putative U6 small n... 84 0.00093 1
POMBASE|SPBC3E7.14 - symbol:smf1 "Sm snRNP core protein S... 84 0.00093 1
>TAIR|locus:2180295 [details] [associations]
symbol:emb1644 "AT5G27720" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS]
INTERPRO:IPR001163 EMBL:CP002688 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 OMA:NRNTFGG IPI:IPI00529680
RefSeq:NP_198124.1 UniGene:At.43840 ProteinModelPortal:F4K4E3
SMR:F4K4E3 PRIDE:F4K4E3 EnsemblPlants:AT5G27720.1 GeneID:832834
KEGG:ath:AT5G27720 Uniprot:F4K4E3
Length = 129
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 89/92 (96%), Positives = 91/92 (98%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 92
IRGNTIKYLRVPDEVIDKVQEE K+R+DRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPP 91
>FB|FBgn0032240 [details] [associations]
symbol:CG17768 species:7227 "Drosophila melanogaster"
[GO:0017070 "U6 snRNA binding" evidence=ISS] INTERPRO:IPR001163
EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00610000086173 InterPro:IPR027141 PANTHER:PTHR23338
UniGene:Dm.13910 EMBL:BT044323 RefSeq:NP_001027236.1
RefSeq:NP_001188778.1 SMR:Q9VKW8 IntAct:Q9VKW8 MINT:MINT-774206
STRING:Q9VKW8 EnsemblMetazoa:FBtr0100253 EnsemblMetazoa:FBtr0304111
GeneID:3772012 KEGG:dme:Dmel_CG17768 UCSC:CG17768-RA
FlyBase:FBgn0032240 InParanoid:Q9VKW8 OMA:NQRAPRS NextBio:852113
Uniprot:Q9VKW8
Length = 154
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 73/87 (83%), Positives = 84/87 (96%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD+WMNI+LR+VICTSKDGDRFWRMPECY
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRS 87
IRG+TIKYLR+PDEVID V+E+ +++S
Sbjct: 61 IRGSTIKYLRIPDEVIDMVKEDAQAKS 87
>ZFIN|ZDB-GENE-040426-1652 [details] [associations]
symbol:lsm4 "LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1652 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:BX936438 EMBL:BC059435 EMBL:BC062285 IPI:IPI00505813
RefSeq:NP_956990.1 UniGene:Dr.159006 STRING:Q6P6E4
Ensembl:ENSDART00000037824 GeneID:393669 KEGG:dre:393669
InParanoid:Q6P6E4 NextBio:20814675 Uniprot:Q6P6E4
Length = 143
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 72/86 (83%), Positives = 81/86 (94%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSR 86
IRG+TIKYLR+PDE+ID V+EE S+
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVSK 86
>MGI|MGI:1354692 [details] [associations]
symbol:Lsm4 "LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1354692
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:AJ249439 IPI:IPI00134784 RefSeq:NP_056631.2 UniGene:Mm.248188
ProteinModelPortal:Q9QXA5 SMR:Q9QXA5 STRING:Q9QXA5
PhosphoSite:Q9QXA5 PaxDb:Q9QXA5 PRIDE:Q9QXA5 GeneID:50783
KEGG:mmu:50783 InParanoid:Q9QXA5 NextBio:307741 Bgee:Q9QXA5
Genevestigator:Q9QXA5 GermOnline:ENSMUSG00000031848 Uniprot:Q9QXA5
Length = 137
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 92
IRG+TIKYLR+PDE+ID V+EE R P
Sbjct: 61 IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGP 92
>UNIPROTKB|Q3ZBK6 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 EMBL:BC103243 IPI:IPI00718624
RefSeq:NP_001030513.1 UniGene:Bt.49560 ProteinModelPortal:Q3ZBK6
SMR:Q3ZBK6 STRING:Q3ZBK6 PRIDE:Q3ZBK6 Ensembl:ENSBTAT00000011312
GeneID:613634 KEGG:bta:613634 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 InParanoid:Q3ZBK6
OMA:GMQQQKQ OrthoDB:EOG4T784T NextBio:20898680 InterPro:IPR027141
PANTHER:PTHR23338 Uniprot:Q3ZBK6
Length = 139
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 71/86 (82%), Positives = 81/86 (94%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSR 86
IRG+TIKYLR+PDE+ID V+EE ++
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAK 86
>UNIPROTKB|Q9Y4Z0 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005688 "U6
snRNP" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043928 GO:GO:0005688 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486
CTD:25804 HOGENOM:HOG000182713 OMA:GMQQQKQ OrthoDB:EOG4T784T
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:AJ238096 EMBL:AF182290
EMBL:AF117235 EMBL:AF251218 EMBL:BC000387 EMBL:BC003652
EMBL:BC022198 EMBL:BC023665 IPI:IPI00294955 RefSeq:NP_036453.1
UniGene:Hs.515255 ProteinModelPortal:Q9Y4Z0 SMR:Q9Y4Z0
DIP:DIP-31209N IntAct:Q9Y4Z0 MINT:MINT-1469332 STRING:Q9Y4Z0
PhosphoSite:Q9Y4Z0 DMDM:10720082 PaxDb:Q9Y4Z0 PeptideAtlas:Q9Y4Z0
PRIDE:Q9Y4Z0 DNASU:25804 Ensembl:ENST00000252816 GeneID:25804
KEGG:hsa:25804 UCSC:uc002niq.3 GeneCards:GC19M018417
HGNC:HGNC:17259 HPA:HPA040932 MIM:607284 neXtProt:NX_Q9Y4Z0
PharmGKB:PA134906569 InParanoid:Q9Y4Z0 PhylomeDB:Q9Y4Z0
ChiTaRS:LSM4 GenomeRNAi:25804 NextBio:47015 Bgee:Q9Y4Z0
CleanEx:HS_LSM4 Genevestigator:Q9Y4Z0 GermOnline:ENSG00000130520
Uniprot:Q9Y4Z0
Length = 139
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 71/86 (82%), Positives = 81/86 (94%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSR 86
IRG+TIKYLR+PDE+ID V+EE ++
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAK 86
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPL LL AQGHPMLVELKNGET NGHL NCD WMN+ LREV+ TS +GDRF+++PE Y
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRK 90
+RGN IKYLR+P+E+ID V+E+ +++S +
Sbjct: 61 VRGNNIKYLRIPEEIIDMVKEQQQNQSQNR 90
>DICTYBASE|DDB_G0287053 [details] [associations]
symbol:lsm4 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0287053
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0003723 GO:GO:0006402 GO:GO:0000398 EMBL:AAFI02000096
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_637396.1 HSSP:P62314 ProteinModelPortal:Q54KX4
STRING:Q54KX4 EnsemblProtists:DDB0233378 GeneID:8625927
KEGG:ddi:DDB_G0287053 OMA:NRNTFGG Uniprot:Q54KX4
Length = 177
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 60/85 (70%), Positives = 72/85 (84%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLL+T QGH ++VELKNGETYNG LVNCD WMNI+L+ VI TSKD D+FW++ CY
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKS 85
IRGNTIKY+ VPDE+ID V EE ++
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQT 85
>WB|WBGene00003078 [details] [associations]
symbol:lsm-4 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0008380 GO:GO:0006397 GO:GO:0010171 GO:GO:0040011
GO:GO:0003723 GO:GO:0030529 GO:GO:0007281 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:FO080735 PIR:T16234
RefSeq:NP_495514.1 ProteinModelPortal:Q19952 SMR:Q19952
IntAct:Q19952 STRING:Q19952 PaxDb:Q19952 EnsemblMetazoa:F32A5.7
GeneID:174193 KEGG:cel:CELE_F32A5.7 UCSC:F32A5.7 CTD:3772280
WormBase:F32A5.7 InParanoid:Q19952 NextBio:882941 Uniprot:Q19952
Length = 123
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
+LPLSLLKTAQ HPMLVELKNGETYNGHL CD+WMNIHL +VI TSKDGD+F++M E Y
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61
Query: 61 IRGNTIKYLRVPDEVIDKVQEE 82
+RG+TIKYLR+P+ V+D V+ E
Sbjct: 62 VRGSTIKYLRIPETVVDLVKTE 83
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 57/90 (63%), Positives = 73/90 (81%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPL+LL QG P+LVELKNGET+NGHL NCD +MN+ LREVI T DGD+F+R+PECY
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKV-QEETKSRSDR 89
IRGN IKYLR+ DEV+ +V +++ + R +R
Sbjct: 61 IRGNNIKYLRIQDEVLSQVAKQQAQQRENR 90
>UNIPROTKB|G4MT14 [details] [associations]
symbol:MGG_01509 "Glycine rich protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_003714480.1 ProteinModelPortal:G4MT14
EnsemblFungi:MGG_01509T0 GeneID:2679152 KEGG:mgr:MGG_01509
Uniprot:G4MT14
Length = 121
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 50/75 (66%), Positives = 62/75 (82%)
Query: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
M+VELKNGET NGHLV CDTWMN+ LREV+ TS DGD+F R+PE Y++GN IKYLRVPDE
Sbjct: 1 MMVELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPDE 60
Query: 75 VIDKVQEETKSRSDR 89
VID+V+E+ + +
Sbjct: 61 VIDQVKEQQQQHQQQ 75
>SGD|S000000914 [details] [associations]
symbol:LSM4 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
[GO:0017070 "U6 snRNA binding" evidence=IMP;IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
SGD:S000000914 INTERPRO:IPR001163 GO:GO:0005730 EMBL:BK006939
GO:GO:0008033 GO:GO:0000932 GO:GO:0000956 GO:GO:0000398
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18916
GO:GO:0006364 GO:GO:0046540 GO:GO:0017070 GO:GO:0005732
GO:GO:0005688 RefSeq:NP_011037.3 GeneID:856848 KEGG:sce:YER112W
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00610000086173 InterPro:IPR027141
PANTHER:PTHR23338 OrthoDB:EOG49S9H0 EMBL:X82649 EMBL:M97918
PIR:S50615 RefSeq:NP_011041.3 ProteinModelPortal:P40070 SMR:P40070
DIP:DIP-848N IntAct:P40070 MINT:MINT-390432 STRING:P40070
PaxDb:P40070 PeptideAtlas:P40070 EnsemblFungi:YER112W GeneID:856852
KEGG:sce:YER116C CYGD:YER112w OMA:IMDYAKE NextBio:983177
Genevestigator:P40070 GermOnline:YER112W Uniprot:P40070
Length = 187
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVI-------CTSKDG--- 50
MLPL LL A+G M +ELKNGE G L N D WMN+ L V S+D
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 51 DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSD 88
+ ++ E YIRG IK++++ D +IDKV+++ S ++
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQINSNNN 98
>UNIPROTKB|G4NGM8 [details] [associations]
symbol:MGG_04083 "Small nuclear ribonucleoprotein Sm D3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11088 RefSeq:XP_003719755.1
ProteinModelPortal:G4NGM8 SMR:G4NGM8 EnsemblFungi:MGG_04083T0
GeneID:2677512 KEGG:mgr:MGG_04083 Uniprot:G4NGM8
Length = 119
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ LL AQGH + +E+ G+TY G L++ + MNI LR++ T++DG R + + YI
Sbjct: 7 IPIKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDG-RVSHLDQVYI 65
Query: 62 RGNTIKYLRVPD 73
RG+ +++ VPD
Sbjct: 66 RGSHVRFFIVPD 77
>DICTYBASE|DDB_G0273003 [details] [associations]
symbol:snrpD3 "putative small nuclear
ribonucleoprotein D3" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0273003
INTERPRO:IPR001163 GenomeReviews:CM000151_GR EMBL:AAFI02000008
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11088 RefSeq:XP_001134627.1 ProteinModelPortal:Q86L45
SMR:Q86L45 STRING:Q86L45 EnsemblProtists:DDB0233194 GeneID:8618627
KEGG:ddi:DDB_G0273003 InParanoid:Q86L45 OMA:HEADGHI
ProtClustDB:CLSZ2847462 Uniprot:Q86L45
Length = 146
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A GH + VELKNGE Y G L+ + MN ++ + T++DG R +M CY+
Sbjct: 5 IPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDG-RNSQMEYCYV 63
Query: 62 RGNTIKYLRVPD 73
RG+ ++++ +PD
Sbjct: 64 RGSKVRFIILPD 75
>SGD|S000004137 [details] [associations]
symbol:SMD3 "Core Sm protein Sm D3" species:4932
"Saccharomyces cerevisiae" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003729 "mRNA binding" evidence=IPI] SGD:S000004137
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0003729 GO:GO:0005682
EMBL:BK006945 EMBL:U53879 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0000243 GO:GO:0046540 GO:GO:0071004
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685 EMBL:M65144
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV OrthoDB:EOG4285B6 EMBL:Z73319 EMBL:AY558533 PIR:S29093
RefSeq:NP_013248.1 ProteinModelPortal:P43321 SMR:P43321
DIP:DIP-715N IntAct:P43321 MINT:MINT-517864 STRING:P43321
EnsemblFungi:YLR147C GeneID:850839 KEGG:sce:YLR147C CYGD:YLR147c
NextBio:967120 Genevestigator:P43321 GermOnline:YLR147C
Uniprot:P43321
Length = 101
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ LL AQGH + +EL G TY G LV + MN+ LR+VI T G M + ++
Sbjct: 6 IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFV 64
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 92
RG+ IK++ VPD ++ K+ S PP
Sbjct: 65 RGSQIKFIVVPD-LLKNAPLFKKNSSRPMPP 94
>POMBASE|SPBC19C2.14 [details] [associations]
symbol:smd3 "Sm snRNP core protein Smd3" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=ISS] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IC] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IMP] PomBase:SPBC19C2.14 INTERPRO:IPR001163
GO:GO:0070317 EMBL:CU329671 GO:GO:0003729 GenomeReviews:CU329671_GR
GO:GO:0006995 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000243
GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000182712 KO:K11088 PIR:T39805
RefSeq:NP_595699.1 ProteinModelPortal:Q9UUC6 SMR:Q9UUC6
IntAct:Q9UUC6 STRING:Q9UUC6 EnsemblFungi:SPBC19C2.14.1
GeneID:2540884 KEGG:spo:SPBC19C2.14 OMA:VITIECK OrthoDB:EOG4285B6
NextBio:20802000 Uniprot:Q9UUC6
Length = 97
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
L + LL QGH + +EL+NG TY G L+ + MN +R++ T++DG R + + YI
Sbjct: 3 LCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYI 61
Query: 62 RGNTIKYLRVPD 73
RG+ I++L VPD
Sbjct: 62 RGSHIRFLIVPD 73
>TAIR|locus:2030442 [details] [associations]
symbol:AT1G20580 "AT1G20580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] INTERPRO:IPR001163 EMBL:CP002684
GO:GO:0005829 GO:GO:0005730 EMBL:AC069251 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 HSSP:P62314 KO:K11088 UniGene:At.51694
OMA:HEADGHI EMBL:AF412086 EMBL:AY093974 IPI:IPI00535052
RefSeq:NP_564119.1 UniGene:At.15483 UniGene:At.73171
ProteinModelPortal:Q9LM92 SMR:Q9LM92 STRING:Q9LM92 PRIDE:Q9LM92
EnsemblPlants:AT1G20580.1 GeneID:838647 KEGG:ath:AT1G20580
TAIR:At1g20580 InParanoid:Q9LM92 PhylomeDB:Q9LM92
ProtClustDB:CLSN2682747 Genevestigator:Q9LM92 Uniprot:Q9LM92
Length = 131
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNC-DTWMNIHLREVICTSKDGDRFWRMPECY 60
+P+ LL A GH + VELK+GE Y G ++ C D W N L ++ T+KDG + ++ +
Sbjct: 7 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVF 64
Query: 61 IRGNTIKYLRVPD 73
IRG+ ++++ +PD
Sbjct: 65 IRGSKVRFMVIPD 77
>ASPGD|ASPL0000047555 [details] [associations]
symbol:AN2007 species:162425 "Emericella nidulans"
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR OrthoDB:EOG4285B6
RefSeq:XP_659611.1 ProteinModelPortal:Q5BBS3 SMR:Q5BBS3
STRING:Q5BBS3 EnsemblFungi:CADANIAT00008675 GeneID:2874973
KEGG:ani:AN2007.2 Uniprot:Q5BBS3
Length = 116
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ LL AQGH + +E+ +G Y G L+ + MN+ L+++ T++DG R + + YI
Sbjct: 10 IPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYI 68
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDR 89
RG+ +++ VPD + + T+ + R
Sbjct: 69 RGSHVRFFIVPDMLRNAPMFRTRGQRGR 96
>CGD|CAL0005718 [details] [associations]
symbol:SMD3 species:5476 "Candida albicans" [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0070317 "negative regulation of G0
to G1 transition" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] CGD:CAL0005718 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AACQ01000202 EMBL:AACQ01000200 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088 RefSeq:XP_711350.1
RefSeq:XP_711397.1 ProteinModelPortal:Q59NQ6 STRING:Q59NQ6
GeneID:3647011 GeneID:3647060 KEGG:cal:CaO19.11622
KEGG:cal:CaO19.4146 Uniprot:Q59NQ6
Length = 106
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ LL AQGH + +EL NG+TY G L+ + MN+ L E T + M + +I
Sbjct: 5 IPVRLLNEAQGHIISIELINGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQVFI 64
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 92
RG+ I+++ VPD + + K KPP
Sbjct: 65 RGSMIRFISVPDILKNAPMFFMKPGDKPKPP 95
>TAIR|locus:2014589 [details] [associations]
symbol:SmD3 "AT1G76300" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA]
INTERPRO:IPR001163 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 EMBL:AC009978
EMBL:AC012394 GO:GO:0016604 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV ProtClustDB:CLSN2682747 EMBL:AF380651 EMBL:AY054149
EMBL:AY087251 IPI:IPI00524355 PIR:E96790 RefSeq:NP_177757.1
UniGene:At.16581 ProteinModelPortal:Q9S7E6 SMR:Q9S7E6 STRING:Q9S7E6
PaxDb:Q9S7E6 PRIDE:Q9S7E6 EnsemblPlants:AT1G76300.1 GeneID:843963
KEGG:ath:AT1G76300 TAIR:At1g76300 InParanoid:Q9S7E6
PhylomeDB:Q9S7E6 Genevestigator:Q9S7E6 Uniprot:Q9S7E6
Length = 128
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNC-DTWMNIHLREVICTSKDGDRFWRMPECY 60
+P+ LL + GH + VE+K+GE Y G ++ C D W N L + T+KDG + ++ +
Sbjct: 7 IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
Query: 61 IRGNTIKYLRVPD 73
IRG+ +++L +PD
Sbjct: 65 IRGSLVRFLVIPD 77
>WB|WBGene00004914 [details] [associations]
symbol:snr-1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0032940 "secretion by cell" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0043186 "P granule" evidence=IDA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0006397 GO:GO:0000003 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 EMBL:AL117204 EMBL:U23937 PIR:T31498
RefSeq:NP_503027.1 ProteinModelPortal:Q17348 SMR:Q17348
IntAct:Q17348 STRING:Q17348 PaxDb:Q17348
EnsemblMetazoa:Y116A8C.42.1 EnsemblMetazoa:Y116A8C.42.2
GeneID:178483 KEGG:cel:CELE_Y116A8C.42 UCSC:Y116A8C.42.1 CTD:178483
WormBase:Y116A8C.42 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 InParanoid:Q17348 KO:K11088 OMA:ESIPIKV
NextBio:901312 Uniprot:Q17348
Length = 136
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + +E GE Y G L + MN L E + T +DG R ++ +I
Sbjct: 6 VPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFI 64
Query: 62 RGNTIKYLRVPD 73
RGN I+++ +PD
Sbjct: 65 RGNKIRFMILPD 76
>UNIPROTKB|Q5ZL58 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR CTD:6634 HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J
EMBL:AADN02043235 EMBL:AJ719876 IPI:IPI00604392
RefSeq:NP_001007839.1 UniGene:Gga.8376 SMR:Q5ZL58 STRING:Q5ZL58
Ensembl:ENSGALT00000010647 GeneID:416947 KEGG:gga:416947
InParanoid:Q5ZL58 NextBio:20820335 Uniprot:Q5ZL58
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|F1MZ00 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 OMA:RNAPMFR
EMBL:DAAA02045688 IPI:IPI00699558 UniGene:Bt.28460
ProteinModelPortal:F1MZ00 SMR:F1MZ00 PRIDE:F1MZ00
Ensembl:ENSBTAT00000028330 Uniprot:F1MZ00
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|B4DJP7 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AP000356 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 UniGene:Hs.356549 HGNC:HGNC:11160
HOVERGEN:HBG105305 EMBL:AK296173 IPI:IPI00878876 SMR:B4DJP7
STRING:B4DJP7 Ensembl:ENST00000402849 UCSC:uc011aju.2
Uniprot:B4DJP7
Length = 120
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|P62318 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0005683 "U7 snRNP" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 PDB:3VRI PDBsum:3VRI
EMBL:CH471095 Reactome:REACT_1675 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 PDB:1D3B PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D
PDB:3CW1 PDB:3PGW PDBsum:1D3B PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C
PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR EMBL:U15009 EMBL:CR456583 EMBL:AB451249 EMBL:AB451373
EMBL:BC000457 EMBL:BC003150 IPI:IPI00017964 RefSeq:NP_004166.1
UniGene:Hs.356549 ProteinModelPortal:P62318 SMR:P62318
DIP:DIP-31216N IntAct:P62318 MINT:MINT-5002679 STRING:P62318
PhosphoSite:P62318 DMDM:51338667 PaxDb:P62318 PeptideAtlas:P62318
PRIDE:P62318 DNASU:6634 Ensembl:ENST00000215829
Ensembl:ENST00000404603 GeneID:6634 KEGG:hsa:6634 UCSC:uc003aam.1
CTD:6634 GeneCards:GC22P024951 HGNC:HGNC:11160 HPA:HPA001170
MIM:601062 neXtProt:NX_P62318 PharmGKB:PA36001 HOVERGEN:HBG105305
InParanoid:P62318 OrthoDB:EOG4CRM1J PhylomeDB:P62318
EvolutionaryTrace:P62318 GenomeRNAi:6634 NextBio:25845
ArrayExpress:P62318 Bgee:P62318 CleanEx:HS_SNRPD3
Genevestigator:P62318 Uniprot:P62318
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|F2Z4Y0 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
OMA:RNAPMFR CTD:6634 EMBL:FP476093 RefSeq:NP_001230355.1
UniGene:Ssc.6651 ProteinModelPortal:F2Z4Y0 SMR:F2Z4Y0 PRIDE:F2Z4Y0
Ensembl:ENSSSCT00000011019 GeneID:100153480 KEGG:ssc:100153480
Uniprot:F2Z4Y0
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|P62323 [details] [associations]
symbol:snrpd3 "Small nuclear ribonucleoprotein Sm D3"
species:8355 "Xenopus laevis" [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0071208 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338 KO:K11088
CTD:6634 HOVERGEN:HBG105305 EMBL:BC070616 RefSeq:NP_001084936.1
UniGene:Xl.75328 ProteinModelPortal:P62323 SMR:P62323 PRIDE:P62323
GeneID:431993 KEGG:xla:431993 Xenbase:XB-GENE-1014508
Uniprot:P62323
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>MGI|MGI:1914582 [details] [associations]
symbol:Snrpd3 "small nuclear ribonucleoprotein D3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:1914582 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR CTD:6634
HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J EMBL:AK005341 EMBL:AK006692
EMBL:AK019453 EMBL:AK160321 IPI:IPI00119224 RefSeq:NP_080371.1
UniGene:Mm.392843 UniGene:Mm.45151 ProteinModelPortal:P62320
SMR:P62320 IntAct:P62320 MINT:MINT-124943 STRING:P62320
PhosphoSite:P62320 PaxDb:P62320 PRIDE:P62320
Ensembl:ENSMUST00000020397 GeneID:67332 KEGG:mmu:67332
UCSC:uc007fqm.1 InParanoid:P62320 ChiTaRS:SNRPD3 NextBio:324264
Bgee:P62320 CleanEx:MM_SNRPD3 Genevestigator:P62320
GermOnline:ENSMUSG00000020180 Uniprot:P62320
Length = 126
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>ZFIN|ZDB-GENE-030131-5219 [details] [associations]
symbol:snrpd3l "small nuclear ribonucleoprotein D3
polypeptide, like" species:7955 "Danio rerio" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-030131-5219
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 EMBL:CU570693 IPI:IPI00998432
Ensembl:ENSDART00000130407 ArrayExpress:F1QL20 Bgee:F1QL20
Uniprot:F1QL20
Length = 171
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 48 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVSQLEQVYI 106
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 107 RGSKIRFLILPD 118
>ZFIN|ZDB-GENE-040625-55 [details] [associations]
symbol:snrpd3 "small nuclear ribonucleoprotein D3
polypeptide" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-040625-55
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 CTD:6634 HOVERGEN:HBG105305 EMBL:BC071554
IPI:IPI00630099 RefSeq:NP_001002081.1 UniGene:Dr.83576
ProteinModelPortal:Q6IQ56 SMR:Q6IQ56 STRING:Q6IQ56 GeneID:415171
KEGG:dre:415171 InParanoid:Q6IQ56 NextBio:20818843
ArrayExpress:Q6IQ56 Uniprot:Q6IQ56
Length = 127
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + +N + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKP 91
RG+ I++L +PD + K KS ++ P
Sbjct: 64 RGSKIRFLILPDML--KNAPMLKSMKNKNP 91
>FB|FBgn0023167 [details] [associations]
symbol:SmD3 "Small ribonucleoprotein particle protein SmD3"
species:7227 "Drosophila melanogaster" [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0048542 "lymph gland
development" evidence=IMP] [GO:0007422 "peripheral nervous system
development" evidence=NAS;IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;NAS;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0007067 GO:GO:0007052 GO:GO:0030182 GO:GO:0007422
GO:GO:0007417 GO:GO:0007517 GO:GO:0048542 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0045451 GO:GO:0045495 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
EMBL:AF038598 EMBL:AY113465 RefSeq:NP_725106.1 UniGene:Dm.19912
ProteinModelPortal:O44437 SMR:O44437 DIP:DIP-19470N IntAct:O44437
MINT:MINT-306370 STRING:O44437 PaxDb:O44437 PRIDE:O44437
EnsemblMetazoa:FBtr0087986 GeneID:36306 KEGG:dme:Dmel_CG8427
CTD:36306 FlyBase:FBgn0023167 InParanoid:O44437 OMA:RNAPMFR
OrthoDB:EOG44TMRK PhylomeDB:O44437 GenomeRNAi:36306 NextBio:797837
Bgee:O44437 GermOnline:CG8427 Uniprot:O44437
Length = 151
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + ++ T +DG R + YI
Sbjct: 5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>UNIPROTKB|E1BY33 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 OMA:WGHQVEL
GO:GO:0005683 GO:GO:0071208 GeneTree:ENSGT00510000048364
InterPro:IPR006649 SMART:SM00651 EMBL:AADN02043869 IPI:IPI00598760
Ensembl:ENSGALT00000003324 Uniprot:E1BY33
Length = 122
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ GH V+L++ T G + N D +MN+ L EV T + G+ ++ E ++ G
Sbjct: 20 LLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGE-VSQLDEIFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PDEV
Sbjct: 79 VRYVHIPDEV 88
>WB|WBGene00001808 [details] [associations]
symbol:gut-2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0016477 GO:GO:0008406 GO:GO:0042127
GO:GO:0007281 GO:GO:0040027 GO:GO:0040020 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12621 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 GeneTree:ENSGT00390000016597 EMBL:Z81118
GeneID:179833 KEGG:cel:CELE_T10G3.6 CTD:179833 PIR:D89269
PIR:T24808 RefSeq:NP_001256511.1 ProteinModelPortal:P92022
SMR:P92022 STRING:P92022 PaxDb:P92022 EnsemblMetazoa:T10G3.6a
WormBase:T10G3.6a InParanoid:P92022 NextBio:907050
ArrayExpress:P92022 Uniprot:P92022
Length = 97
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++N+ L ++ T D +RF M
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVK 58
Query: 58 ECYIRGNTIKYLRVPDEVID 77
C+IRG+ ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPSDQVD 78
>DICTYBASE|DDB_G0281779 [details] [associations]
symbol:lsm2 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 dictyBase:DDB_G0281779 INTERPRO:IPR001163
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
RefSeq:XP_640635.1 ProteinModelPortal:Q54TF6 STRING:Q54TF6
EnsemblProtists:DDB0233376 GeneID:8623246 KEGG:ddi:DDB_G0281779
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 Uniprot:Q54TF6
Length = 117
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFW-RMPEC 59
ML S K+ G + VELKN + G L + D ++NI L+++ +D + + C
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 60 YIRGNTIKYLRVPDEVIDKVQEETKSRSDRK 90
+IRG+ ++Y+ +P E +D + SR + +
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
>CGD|CAL0000979 [details] [associations]
symbol:orf19.7673 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] CGD:CAL0000979 INTERPRO:IPR001163 EMBL:AACQ01000032
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 RefSeq:XP_719431.1
ProteinModelPortal:Q5ACG9 STRING:Q5ACG9 GeneID:3638958
KEGG:cal:CaO19.7673 Uniprot:Q5ACG9
Length = 116
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
+ + P+ VELKNG +G L++C+ MN+HL+ V D + IRGN +
Sbjct: 10 IPNSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPIL-LQYINIRGNQV 68
Query: 67 KYLRVPDEV-IDKV--QEETKSRSDRKPP 92
+ + +PDE+ I+ V + ETK + P
Sbjct: 69 RQILLPDELNIESVLAKSETKIKGSGAGP 97
>UNIPROTKB|A6QQV3 [details] [associations]
symbol:LSM2 "LSM2 protein" species:9913 "Bos taurus"
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 CTD:57819 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:DAAA02055373
EMBL:BC150005 IPI:IPI00702946 RefSeq:NP_001094647.1
UniGene:Bt.43826 SMR:A6QQV3 STRING:A6QQV3
Ensembl:ENSBTAT00000007405 GeneID:538662 KEGG:bta:538662
InParanoid:A6QQV3 NextBio:20877502 Uniprot:A6QQV3
Length = 95
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVPDEVID 77
C+IRG+ ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>UNIPROTKB|Q9Y333 [details] [associations]
symbol:LSM2 "U6 snRNA-associated Sm-like protein LSm2"
species:9606 "Homo sapiens" [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;NAS;TAS] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016654 PIRSF:PIRSF016394
EMBL:AF182288 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654
EMBL:BA000025 EMBL:CH471081 Reactome:REACT_1675 EMBL:CR759787
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AF134726 GO:GO:0017070 GO:GO:0043928 Pfam:PF01423
EMBL:AL929592 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 EMBL:AJ245416 EMBL:AF196468
EMBL:AF136977 EMBL:CR542146 EMBL:CR542157 EMBL:CR759915
EMBL:CR925765 EMBL:BC009192 IPI:IPI00032460 RefSeq:NP_067000.1
UniGene:Hs.103106 ProteinModelPortal:Q9Y333 SMR:Q9Y333
DIP:DIP-31139N IntAct:Q9Y333 MINT:MINT-1032572 STRING:Q9Y333
PhosphoSite:Q9Y333 DMDM:10720079 PaxDb:Q9Y333 PeptideAtlas:Q9Y333
PRIDE:Q9Y333 DNASU:57819 Ensembl:ENST00000375661
Ensembl:ENST00000383391 Ensembl:ENST00000424975
Ensembl:ENST00000432122 Ensembl:ENST00000434125
Ensembl:ENST00000455705 GeneID:57819 KEGG:hsa:57819 UCSC:uc003nxg.3
CTD:57819 GeneCards:GC06M031765 HGNC:HGNC:13940 MIM:607282
neXtProt:NX_Q9Y333 PharmGKB:PA25929 HOGENOM:HOG000166937
HOVERGEN:HBG000486 InParanoid:Q9Y333 OrthoDB:EOG4Z36G9
PhylomeDB:Q9Y333 GenomeRNAi:57819 NextBio:64772 ArrayExpress:Q9Y333
Bgee:Q9Y333 CleanEx:HS_LSM2 Genevestigator:Q9Y333
GermOnline:ENSG00000204392 Uniprot:Q9Y333
Length = 95
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVPDEVID 77
C+IRG+ ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>MGI|MGI:90676 [details] [associations]
symbol:Lsm2 "LSM2 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR016654
PIRSF:PIRSF016394 EMBL:U85207 MGI:MGI:90676 INTERPRO:IPR001163
GO:GO:0019901 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
PANTHER:PTHR13829 CTD:57819 HOVERGEN:HBG000486 OrthoDB:EOG4Z36G9
EMBL:AF397035 EMBL:AF397036 EMBL:BC014288 IPI:IPI00876050
RefSeq:NP_001103571.1 UniGene:Mm.165735 ProteinModelPortal:O35900
SMR:O35900 STRING:O35900 PhosphoSite:O35900
REPRODUCTION-2DPAGE:O35900 PaxDb:O35900 PRIDE:O35900
Ensembl:ENSMUST00000114011 GeneID:27756 KEGG:mmu:27756
InParanoid:O35900 NextBio:306064 Bgee:O35900 Genevestigator:O35900
GermOnline:ENSMUSG00000007050 Uniprot:O35900
Length = 95
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVPDEVID 77
C+IRG+ ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>ZFIN|ZDB-GENE-000616-10 [details] [associations]
symbol:smx5 "smx5" species:7955 "Danio rerio"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 ZFIN:ZDB-GENE-000616-10
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:FP101882
EMBL:BC085441 EMBL:BC152150 IPI:IPI00490217 RefSeq:NP_571571.1
UniGene:Dr.75582 STRING:Q5RKP8 Ensembl:ENSDART00000104394
GeneID:57924 KEGG:dre:57924 CTD:57924 InParanoid:Q5RKP8
NextBio:20891940 Uniprot:Q5RKP8
Length = 95
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVPDEVID 77
C+IRG+ ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>UNIPROTKB|F1NLM5 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00510000047245
OMA:KMTIKNR EMBL:AADN02001243 IPI:IPI00601699
Ensembl:ENSGALT00000019325 Uniprot:F1NLM5
Length = 121
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ I
Sbjct: 5 VPRFLMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSI 62
Query: 62 RGNTIKYLRVPDEV-IDK--VQEETKSRSDRK 90
RGN I+Y +PD + +D V E K +S ++
Sbjct: 63 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKR 94
>UNIPROTKB|Q969L4 [details] [associations]
symbol:LSM10 "U7 snRNA-associated Sm-like protein LSm10"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 EMBL:AF394685 INTERPRO:IPR001163 GO:GO:0008380
Reactome:REACT_1675 GO:GO:0006397 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 Pfam:PF01423 GO:GO:0008334
EMBL:BC007623 IPI:IPI00056416 RefSeq:NP_116270.1 UniGene:Hs.603131
ProteinModelPortal:Q969L4 SMR:Q969L4 IntAct:Q969L4
MINT:MINT-1485790 STRING:Q969L4 PhosphoSite:Q969L4 DMDM:20177959
PRIDE:Q969L4 Ensembl:ENST00000315732 GeneID:84967 KEGG:hsa:84967
UCSC:uc001cao.1 CTD:84967 GeneCards:GC01M036856 HGNC:HGNC:17562
HPA:HPA048469 neXtProt:NX_Q969L4 PharmGKB:PA134977215
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
InParanoid:Q969L4 OMA:WGHQVEL OrthoDB:EOG4HQDKT PhylomeDB:Q969L4
ChiTaRS:LSM10 GenomeRNAi:84967 NextBio:75496 Bgee:Q969L4
CleanEx:HS_LSM10 Genevestigator:Q969L4 GermOnline:ENSG00000181817
GO:GO:0005683 GO:GO:0071208 Uniprot:Q969L4
Length = 123
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ QG V+L++ +G + N D +MNI L +V T + G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PD+V
Sbjct: 79 VRYVHIPDDV 88
>FB|FBgn0261933 [details] [associations]
symbol:SmD1 "Small ribonucleoprotein particle protein SmD1"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] INTERPRO:IPR001163
EMBL:AE014296 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR EMBL:AY071359 EMBL:BT032651 RefSeq:NP_524774.1
UniGene:Dm.1823 ProteinModelPortal:Q9VU02 SMR:Q9VU02 DIP:DIP-18826N
IntAct:Q9VU02 MINT:MINT-897207 STRING:Q9VU02 PaxDb:Q9VU02
PRIDE:Q9VU02 EnsemblMetazoa:FBtr0075952 GeneID:44668
KEGG:dme:Dmel_CG10753 CTD:44668 FlyBase:FBgn0261933
InParanoid:Q9VU02 OrthoDB:EOG44MW8P PhylomeDB:Q9VU02
GenomeRNAi:44668 NextBio:837527 Bgee:Q9VU02 GermOnline:CG10753
Uniprot:Q9VU02
Length = 124
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ D + IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + ++ + + KS++ +K
Sbjct: 65 IRYFILPDSLPLETLLIDDTPKSKTKKK 92
>WB|WBGene00004916 [details] [associations]
symbol:snr-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0007281
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
EMBL:FO081595 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000182713 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR PIR:T16952 RefSeq:NP_495306.1 ProteinModelPortal:Q10013
SMR:Q10013 IntAct:Q10013 STRING:Q10013 PaxDb:Q10013
EnsemblMetazoa:T28D9.10.1 EnsemblMetazoa:T28D9.10.2 GeneID:174072
KEGG:cel:CELE_T28D9.10 UCSC:T28D9.10.1 CTD:174072 WormBase:T28D9.10
InParanoid:Q10013 NextBio:882385 Uniprot:Q10013
Length = 126
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 75
+ELKNG +G ++ D MN HLR V T K+ + ++ IRGN I+Y+ +PD +
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPLA 75
Query: 76 IDK--VQEETKSRS 87
+D + +E + ++
Sbjct: 76 LDTLLIDDEPRKKA 89
>UNIPROTKB|A4IFN1 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 EMBL:DAAA02009202 EMBL:BC134669
IPI:IPI00709521 RefSeq:NP_001077250.1 UniGene:Bt.13478
STRING:A4IFN1 Ensembl:ENSBTAT00000033237 GeneID:618089
KEGG:bta:618089 InParanoid:A4IFN1 NextBio:20900995 Uniprot:A4IFN1
Length = 122
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ QG V+L++ +G + N D +MNI L +V T + G + + + ++ G
Sbjct: 20 LLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAQVTYTDRWGHQV-ELDDLFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PD V
Sbjct: 79 VRYVHIPDNV 88
>UNIPROTKB|Q3ZC10 [details] [associations]
symbol:SNRPD1 "Small nuclear ribonucleoprotein Sm D1"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:BC102987 IPI:IPI00703535
RefSeq:NP_001030237.1 UniGene:Bt.49433 ProteinModelPortal:Q3ZC10
SMR:Q3ZC10 STRING:Q3ZC10 PRIDE:Q3ZC10 Ensembl:ENSBTAT00000010912
GeneID:508788 KEGG:bta:508788 CTD:6632 GeneTree:ENSGT00510000047245
HOVERGEN:HBG061491 InParanoid:Q3ZC10 KO:K11087 OMA:KMTIKNR
OrthoDB:EOG4933KF NextBio:20868681 Uniprot:Q3ZC10
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>UNIPROTKB|E2R7Q3 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0005683
"U7 snRNP" evidence=IEA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
OMA:WGHQVEL GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:AAEX03009635 RefSeq:XP_532561.1 ProteinModelPortal:E2R7Q3
Ensembl:ENSCAFT00000005422 GeneID:475335 KEGG:cfa:475335
NextBio:20851186 Uniprot:E2R7Q3
Length = 123
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ QG V+L++ G + N D +MNI L V T + G + + + ++ G
Sbjct: 20 LLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PD+V
Sbjct: 79 VRYVHIPDDV 88
>UNIPROTKB|E2RIW7 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 KO:K11087 OMA:KMTIKNR
EMBL:AAEX03005464 RefSeq:XP_537302.1 ProteinModelPortal:E2RIW7
SMR:E2RIW7 PRIDE:E2RIW7 Ensembl:ENSCAFT00000028987 GeneID:480178
KEGG:cfa:480178 NextBio:20855242 Uniprot:E2RIW7
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>UNIPROTKB|P62314 [details] [associations]
symbol:SNRPD1 "Small nuclear ribonucleoprotein Sm D1"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 EMBL:CH471088 GO:GO:0000387
GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0000245 GO:GO:0005689 PDB:3S6N PDBsum:3S6N
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338 PDB:2Y9A
PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6632 HOVERGEN:HBG061491 KO:K11087 OMA:KMTIKNR OrthoDB:EOG4933KF
EMBL:J03798 EMBL:L36188 EMBL:L36182 EMBL:L36186 EMBL:L36187
EMBL:CR542239 EMBL:AB451227 EMBL:AB451350 EMBL:BC001721
EMBL:BC072427 IPI:IPI00302850 PIR:A94201 RefSeq:NP_008869.1
UniGene:Hs.464734 PDB:1B34 PDBsum:1B34 ProteinModelPortal:P62314
SMR:P62314 DIP:DIP-31207N IntAct:P62314 MINT:MINT-1530147
STRING:P62314 PhosphoSite:P62314 DMDM:51338665 PaxDb:P62314
PeptideAtlas:P62314 PRIDE:P62314 DNASU:6632 Ensembl:ENST00000300413
GeneID:6632 KEGG:hsa:6632 UCSC:uc002ktj.1 GeneCards:GC18P019192
HGNC:HGNC:11158 HPA:HPA040516 MIM:601063 neXtProt:NX_P62314
PharmGKB:PA164742464 InParanoid:P62314 PhylomeDB:P62314
ChiTaRS:SNRPD1 EvolutionaryTrace:P62314 GenomeRNAi:6632
NextBio:25835 Bgee:P62314 CleanEx:HS_SNRPD1 Genevestigator:P62314
GermOnline:ENSG00000167088 Uniprot:P62314
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>UNIPROTKB|F2Z5G9 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00510000047245
KO:K11087 OMA:KMTIKNR EMBL:CU633960 RefSeq:XP_003127902.1
ProteinModelPortal:F2Z5G9 SMR:F2Z5G9 PRIDE:F2Z5G9
Ensembl:ENSSSCT00000004100 GeneID:100524872 KEGG:ssc:100524872
Uniprot:F2Z5G9
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>MGI|MGI:98344 [details] [associations]
symbol:Snrpd1 "small nuclear ribonucleoprotein D1"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] MGI:MGI:98344 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OMA:KMTIKNR OrthoDB:EOG4933KF ChiTaRS:SNRPD1 EMBL:M58558
EMBL:AK005517 EMBL:AK007674 EMBL:AK011455 EMBL:AK013075
EMBL:AK134582 EMBL:AK135979 EMBL:BC024875 IPI:IPI00322749
RefSeq:NP_033252.1 UniGene:Mm.603 ProteinModelPortal:P62315
SMR:P62315 MINT:MINT-124808 STRING:P62315 PhosphoSite:P62315
PaxDb:P62315 PRIDE:P62315 Ensembl:ENSMUST00000002551 GeneID:20641
KEGG:mmu:20641 UCSC:uc008eaz.1 InParanoid:P62315 NextBio:299047
Bgee:P62315 CleanEx:MM_SNRPD1 Genevestigator:P62315
GermOnline:ENSMUSG00000002477 Uniprot:P62315
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>RGD|1306345 [details] [associations]
symbol:Snrpd1 "small nuclear ribonucleoprotein D1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] RGD:1306345 INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0003676 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OrthoDB:EOG4933KF EMBL:BC167095 EMBL:CH474073 IPI:IPI00363471
RefSeq:NP_001099633.1 UniGene:Rn.18606 SMR:B2RZB7 STRING:B2RZB7
Ensembl:ENSRNOT00000018646 GeneID:291794 KEGG:rno:291794
UCSC:RGD:1306345 NextBio:633174 Genevestigator:B2RZB7
Uniprot:B2RZB7
Length = 119
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDVEPKVKSKKR 92
>SGD|S000000122 [details] [associations]
symbol:LSM2 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=TAS] [GO:0003723 "RNA binding"
evidence=IEA;IDA;IPI] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 SGD:S000000122 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 GO:GO:0008033 EMBL:X77291 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
OrthoDB:EOG469V4G EMBL:Z35787 PIR:S45760 RefSeq:NP_009527.1
ProteinModelPortal:P38203 SMR:P38203 DIP:DIP-794N IntAct:P38203
MINT:MINT-383549 STRING:P38203 PaxDb:P38203 PeptideAtlas:P38203
EnsemblFungi:YBL026W GeneID:852255 KEGG:sce:YBL026W CYGD:YBL026w
GeneTree:ENSGT00390000016597 NextBio:970835 Genevestigator:P38203
GermOnline:YBL026W Uniprot:P38203
Length = 95
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS-KDGDRFWRMPEC 59
ML S KT ++VELKN G L + D ++N+ L + CT K +
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 60 YIRGNTIKYLRVPDEVIDK--VQEETKSR--SDRK 90
+IRG+T++Y+ + ++D +Q+ T+ ++RK
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREVMTERK 95
>TAIR|locus:2014480 [details] [associations]
symbol:LSM2 "AT1G03330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0005829 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
OMA:KLDNISC PANTHER:PTHR13829 EMBL:BT025569 IPI:IPI00543239
RefSeq:NP_563682.1 UniGene:At.42549 ProteinModelPortal:Q1H595
SMR:Q1H595 STRING:Q1H595 PaxDb:Q1H595 PRIDE:Q1H595
EnsemblPlants:AT1G03330.1 GeneID:839526 KEGG:ath:AT1G03330
TAIR:At1g03330 InParanoid:Q1H595 PhylomeDB:Q1H595
ProtClustDB:CLSN2687640 Genevestigator:Q1H595 Uniprot:Q1H595
Length = 93
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 60 YIRGNTIKYLRVPDEVID 77
+IRG+ ++Y+++P + +D
Sbjct: 61 FIRGSVVRYVQLPKDGVD 78
>ZFIN|ZDB-GENE-020419-14 [details] [associations]
symbol:snrpd1 "small nuclear ribonucleoprotein D1
polypeptide" species:7955 "Danio rerio" [GO:0007507 "heart
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-020419-14 GO:GO:0007507
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 HSSP:P62314 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OMA:KMTIKNR OrthoDB:EOG4933KF EMBL:CU424444 EMBL:BC071543
EMBL:AF506225 IPI:IPI00500002 RefSeq:NP_775359.1 UniGene:Dr.76122
SMR:Q8JHH1 STRING:Q8JHH1 Ensembl:ENSDART00000013217 GeneID:192331
KEGG:dre:192331 InParanoid:Q8JHH1 NextBio:20797167 Uniprot:Q8JHH1
Length = 119
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K + + +ELKNG +G + D MN HL+ V T K+ + ++ IRGN
Sbjct: 7 LMKLSH-ETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPT-QLESLSIRGNN 64
Query: 66 IKYLRVPDEV-IDK--VQEETKSRSDRK 90
I+Y +PD + +D V E K +S ++
Sbjct: 65 IRYFILPDSLPLDTLLVDIEPKVKSKKR 92
>POMBASE|SPAC27D7.07c [details] [associations]
symbol:smd1 "Sm snRNP core protein Smd1" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=ISS] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IC] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPAC27D7.07c INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003729
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000243 GO:GO:0046540
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338
GO:GO:0005685 GO:GO:0000395 KO:K11087 OMA:KMTIKNR PIR:T38440
RefSeq:NP_594613.1 ProteinModelPortal:O42661 SMR:O42661
IntAct:O42661 STRING:O42661 EnsemblFungi:SPAC27D7.07c.1
GeneID:2542690 KEGG:spo:SPAC27D7.07c OrthoDB:EOG4F7RVR
NextBio:20803738 Uniprot:O42661
Length = 117
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 75
+ELKNG +G + + D MN HL+ V T K G + IRGN I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITSVDMQMNTHLKAVKMTVK-GREPVPVETLSIRGNNIRYYILPDSLP 75
Query: 76 IDK--VQEETKSRSDRK 90
+D + + TK + +K
Sbjct: 76 LDTLLIDDSTKPKQKKK 92
>MGI|MGI:2151045 [details] [associations]
symbol:Lsm10 "U7 snRNP-specific Sm-like protein LSM10"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=ISO] [GO:0017069 "snRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071208 "histone
pre-mRNA DCP binding" evidence=IDA] MGI:MGI:2151045
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0015030
GO:GO:0000084 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017069
Pfam:PF01423 CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640
HOVERGEN:HBG052366 OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683
GO:GO:0071208 EMBL:BC024543 EMBL:BC026476 IPI:IPI00154076
RefSeq:NP_001156738.1 RefSeq:NP_620046.1 UniGene:Mm.41865
ProteinModelPortal:Q8QZX5 SMR:Q8QZX5 STRING:Q8QZX5
PhosphoSite:Q8QZX5 PRIDE:Q8QZX5 Ensembl:ENSMUST00000055575
Ensembl:ENSMUST00000179323 GeneID:116748 KEGG:mmu:116748
GeneTree:ENSGT00510000048364 InParanoid:Q8QZX5 NextBio:369080
Bgee:Q8QZX5 CleanEx:MM_LSM10 Genevestigator:Q8QZX5
GermOnline:ENSMUSG00000050188 InterPro:IPR006649 SMART:SM00651
Uniprot:Q8QZX5
Length = 122
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ QG V+L++ G + N D +MNI L V T + G + + + ++ G
Sbjct: 20 LLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PD V
Sbjct: 79 VRYVHIPDGV 88
>RGD|1584914 [details] [associations]
symbol:Lsm10 "LSM10, U7 small nuclear RNA associated"
species:10116 "Rattus norvegicus" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA;ISO] [GO:0005683 "U7 snRNP"
evidence=IEA;ISO] [GO:0015030 "Cajal body" evidence=IEA;ISO]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA;ISO]
RGD:1584914 INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473968 Pfam:PF01423
CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:BC166902 IPI:IPI00369107 RefSeq:NP_001102446.1 UniGene:Rn.3612
STRING:B2RYU1 Ensembl:ENSRNOT00000035637 GeneID:366468
KEGG:rno:366468 UCSC:RGD:1584914 NextBio:689468
Genevestigator:B2RYU1 Uniprot:B2RYU1
Length = 122
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
LL+ QG V+L++ G + N D +MNI L V T + G + + + ++ G
Sbjct: 20 LLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRN 78
Query: 66 IKYLRVPDEV 75
++Y+ +PD V
Sbjct: 79 VRYVHIPDGV 88
>GENEDB_PFALCIPARUM|PF13_0142 [details] [associations]
symbol:PF13_0142 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P +++ +G ++V L NG Y G L D MN+ L + DG+ + + +IR
Sbjct: 6 PKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTE-EYYDGELTDKYNDAFIR 64
Query: 63 GNTIKYLRVPDE 74
GN + Y+R +E
Sbjct: 65 GNNVFYIRAIEE 76
>UNIPROTKB|Q8IE68 [details] [associations]
symbol:PF13_0142 "Lsm6 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 OMA:YISTSTK
HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P +++ +G ++V L NG Y G L D MN+ L + DG+ + + +IR
Sbjct: 6 PKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTE-EYYDGELTDKYNDAFIR 64
Query: 63 GNTIKYLRVPDE 74
GN + Y+R +E
Sbjct: 65 GNNVFYIRAIEE 76
>TAIR|locus:2091102 [details] [associations]
symbol:AT3G07590 "AT3G07590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005774 EMBL:CP002686 GO:GO:0003676 GO:GO:0030529
EMBL:AC009176 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338
HSSP:P62314 KO:K11087 OMA:KMTIKNR UniGene:At.18333 EMBL:AY069907
EMBL:AY087568 EMBL:AY124838 IPI:IPI00528802 RefSeq:NP_001189837.1
RefSeq:NP_187416.1 ProteinModelPortal:Q9SSF1 SMR:Q9SSF1
STRING:Q9SSF1 PaxDb:Q9SSF1 PRIDE:Q9SSF1 EnsemblPlants:AT3G07590.1
EnsemblPlants:AT3G07590.2 GeneID:819950 KEGG:ath:AT3G07590
TAIR:At3g07590 InParanoid:Q9SSF1 PhylomeDB:Q9SSF1
ProtClustDB:CLSN2684847 Genevestigator:Q9SSF1 Uniprot:Q9SSF1
Length = 114
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 75
+ELKNG +G + D MN HL+ V + K G + +RGN I+Y +PD +
Sbjct: 17 IELKNGTVVHGTITGVDVSMNTHLKTVKMSLK-GKNPVTLDHLSLRGNNIRYYILPDSLN 75
Query: 76 IDKVQ-EETKSRSDRKP 91
++ + E+T +KP
Sbjct: 76 LETLLVEDTPRVKPKKP 92
>ZFIN|ZDB-GENE-040930-9 [details] [associations]
symbol:snrpf "small nuclear ribonucleoprotein
polypeptide F" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040930-9
GO:GO:0005634 GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOVERGEN:HBG052369 HOGENOM:HOG000223542 CTD:6636
KO:K11098 OrthoDB:EOG4TMR3P EMBL:BC162363 EMBL:BC162369
EMBL:AY648838 IPI:IPI00513235 RefSeq:NP_001003881.1
UniGene:Dr.84144 STRING:Q6DRC1 GeneID:445404 KEGG:dre:445404
eggNOG:NOG237730 InParanoid:Q6DRC1 NextBio:20832108 Uniprot:Q6DRC1
Length = 86
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYVDGALAGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>UNIPROTKB|F1P4B8 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AADN02005953
IPI:IPI00574447 ProteinModelPortal:F1P4B8
Ensembl:ENSGALT00000018617 NextBio:20821146 Uniprot:F1P4B8
Length = 85
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 6 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 64
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 65 CNNVLYIRGVEEEEEDGEMRE 85
>UNIPROTKB|Q3T0Z8 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
UniGene:Bt.24628 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 HOGENOM:HOG000223542
EMBL:BC102192 IPI:IPI00689386 RefSeq:NP_001181956.1
ProteinModelPortal:Q3T0Z8 SMR:Q3T0Z8 STRING:Q3T0Z8 PRIDE:Q3T0Z8
Ensembl:ENSBTAT00000021643 GeneID:615240 KEGG:bta:615240 CTD:6636
GeneTree:ENSGT00700000104493 InParanoid:Q3T0Z8 KO:K11098
OMA:KWGHEYK OrthoDB:EOG4TMR3P NextBio:20899519 Uniprot:Q3T0Z8
Length = 86
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>UNIPROTKB|F1Q0L5 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AAEX03009953
Ensembl:ENSCAFT00000010335 Uniprot:F1Q0L5
Length = 111
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 32 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 90
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 91 CNNVLYIRGVEEEEEDGEMRE 111
>UNIPROTKB|P62306 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP;TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IMP] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471054 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG052369
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6636 KO:K11098 OMA:KWGHEYK OrthoDB:EOG4TMR3P EMBL:X85372
EMBL:CR456751 EMBL:AK311752 EMBL:BC002505 EMBL:BC063397
EMBL:BC128452 EMBL:BC128453 IPI:IPI00220528 PIR:S55053
RefSeq:NP_003086.1 UniGene:Hs.105465 ProteinModelPortal:P62306
SMR:P62306 DIP:DIP-31221N IntAct:P62306 MINT:MINT-1137229
STRING:P62306 PhosphoSite:P62306 DMDM:61237391 PaxDb:P62306
PeptideAtlas:P62306 PRIDE:P62306 Ensembl:ENST00000266735
GeneID:6636 KEGG:hsa:6636 UCSC:uc001tej.3 GeneCards:GC12P096252
HGNC:HGNC:11162 MIM:603541 neXtProt:NX_P62306 PharmGKB:PA36003
InParanoid:P62306 PhylomeDB:P62306 ChiTaRS:SNRPF
EvolutionaryTrace:P62306 GenomeRNAi:6636 NextBio:25853
PMAP-CutDB:P62306 ArrayExpress:P62306 Bgee:P62306 CleanEx:HS_SNRPF
Genevestigator:P62306 GermOnline:ENSG00000139343 Uniprot:P62306
Length = 86
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>UNIPROTKB|F1SQR4 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 CTD:6636
GeneTree:ENSGT00700000104493 KO:K11098 OMA:KWGHEYK EMBL:CU633406
RefSeq:NP_001177142.1 UniGene:Ssc.5241 ProteinModelPortal:F1SQR4
SMR:F1SQR4 PRIDE:F1SQR4 Ensembl:ENSSSCT00000000979 GeneID:100155855
KEGG:ssc:100155855 Uniprot:F1SQR4
Length = 86
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>MGI|MGI:1917128 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609 MGI:MGI:1917128
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 CTD:6636 KO:K11098 OMA:KWGHEYK
OrthoDB:EOG4TMR3P EMBL:AK008240 IPI:IPI00943994 RefSeq:NP_081522.1
UniGene:Mm.259642 ProteinModelPortal:P62307 SMR:P62307
STRING:P62307 PhosphoSite:P62307 PaxDb:P62307 PRIDE:P62307
Ensembl:ENSMUST00000020203 GeneID:69878 KEGG:mmu:69878
InParanoid:P62307 NextBio:330523 Bgee:P62307 CleanEx:MM_SNRPF
Genevestigator:P62307 Uniprot:P62307
Length = 86
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>RGD|1588229 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA;ISO] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
CTD:6636 GeneTree:ENSGT00700000104493 KO:K11098 OrthoDB:EOG4TMR3P
IPI:IPI00768974 RefSeq:NP_001119563.1 UniGene:Rn.14918 SMR:D4AAT4
Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737
UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4
Length = 86
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P L G P++V+LK G Y G+LV+ D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GNTIKYLR-VPDEVIDKVQEE 82
N + Y+R V +E D E
Sbjct: 66 CNNVLYIRGVEEEEEDGEMRE 86
>FB|FBgn0000426 [details] [associations]
symbol:SmF "Small ribonucleoprotein particle protein SmF"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GeneTree:ENSGT00700000104493 KO:K11098
OMA:KWGHEYK EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2
UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297
DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:Q24297
PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314
KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426
InParanoid:Q24297 OrthoDB:EOG4DBRXC PhylomeDB:Q24297
GenomeRNAi:36314 NextBio:797873 Bgee:Q24297 GermOnline:CG16792
Uniprot:Q24297
Length = 88
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
P L G P+LV+LK G+ Y G LV+ D +MN+ L EVI S G+ + E
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN----LGEV 64
Query: 60 YIRGNTIKYLR 70
IR N + Y++
Sbjct: 65 LIRCNNVLYIK 75
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P LK+ +G P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
Query: 63 GNTIKYL 69
GN + Y+
Sbjct: 74 GNNVLYI 80
>ASPGD|ASPL0000048203 [details] [associations]
symbol:smd1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 OMA:KMTIKNR
OrthoDB:EOG4F7RVR RefSeq:XP_659709.1 ProteinModelPortal:Q5BBH5
SMR:Q5BBH5 STRING:Q5BBH5 EnsemblFungi:CADANIAT00008778
GeneID:2875679 KEGG:ani:AN2105.2 Uniprot:Q5BBH5
Length = 121
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K A + +ELKNG +G + + MN LR V T K D + IRG+T
Sbjct: 7 LMKCAN-ETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPI-SLDTINIRGST 64
Query: 66 IKYLRVPDEV 75
I+Y +PD +
Sbjct: 65 IRYYILPDSL 74
>DICTYBASE|DDB_G0278027 [details] [associations]
symbol:snrpD1 "putative small nuclear
ribonucleoprotein D1" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0278027
INTERPRO:IPR001163 GenomeReviews:CM000152_GR EMBL:AAFI02000023
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11087 OMA:KMTIKNR RefSeq:XP_642077.1 ProteinModelPortal:Q54YX5
SMR:Q54YX5 STRING:Q54YX5 PRIDE:Q54YX5 EnsemblProtists:DDB0233192
GeneID:8621290 KEGG:ddi:DDB_G0278027 InParanoid:Q54YX5
Uniprot:Q54YX5
Length = 131
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG G + D MN HL+ V T K G + IRGN I+Y +P+ +
Sbjct: 17 IELKNGTIVQGSVAGVDVSMNTHLKTVKLTLK-GKNPVNLDTLSIRGNNIRYFILPESL 74
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P LK G P++V+L +G Y G L D +MNI L + S +G + + +IR
Sbjct: 7 PAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYS-NGQLQNKYGDAFIR 65
Query: 63 GNTIKYL 69
GN + Y+
Sbjct: 66 GNNVLYI 72
>UNIPROTKB|G4MTQ6 [details] [associations]
symbol:MGG_04741 "Small nuclear ribonucleoprotein Sm D1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11087 RefSeq:XP_003713702.1
ProteinModelPortal:G4MTQ6 SMR:G4MTQ6 EnsemblFungi:MGG_04741T0
GeneID:2678064 KEGG:mgr:MGG_04741 Uniprot:G4MTQ6
Length = 125
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNT 65
L+K A + +ELKNG +G + + MN LR V T + D + IRG+T
Sbjct: 7 LMKCAN-ETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPI-PLDAMNIRGST 64
Query: 66 IKYLRVPDEV 75
I+Y +PD +
Sbjct: 65 IRYYILPDSL 74
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P LK G P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GNTIKYL 69
GN + Y+
Sbjct: 67 GNNVLYI 73
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P LK G P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GNTIKYL 69
GN + Y+
Sbjct: 67 GNNVLYI 73
>TAIR|locus:2043969 [details] [associations]
symbol:LSM6B "AT2G43810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC002333 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 EMBL:BT008305 EMBL:AK227857
EMBL:AK317095 IPI:IPI00538248 PIR:G84870 RefSeq:NP_001078052.1
RefSeq:NP_181909.1 UniGene:At.36842 ProteinModelPortal:O22823
SMR:O22823 STRING:O22823 PRIDE:O22823 EnsemblPlants:AT2G43810.1
EnsemblPlants:AT2G43810.2 GeneID:818985 KEGG:ath:AT2G43810
TAIR:At2g43810 InParanoid:O22823 OMA:YISTTKG PhylomeDB:O22823
ProtClustDB:CLSN2683093 ArrayExpress:O22823 Genevestigator:O22823
Uniprot:O22823
Length = 91
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
P LK+ +G P++V+L +G Y G L D +MNI + + +G + ++R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTE-EYVNGQLKNTYGDAFVR 73
Query: 63 GNTIKYL 69
GN + Y+
Sbjct: 74 GNNVLYI 80
>ASPGD|ASPL0000065787 [details] [associations]
symbol:AN10963 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003676 EMBL:BN001304
GO:GO:0000932 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 EnsemblFungi:CADANIAT00000699 Uniprot:C8VBS9
Length = 98
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
ML S KT + +ELKN G L + D ++NI L ++ D +
Sbjct: 1 MLFFSFFKTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNM 60
Query: 60 YIRGNTIKYLRVPDEVID 77
+IRG+ ++Y+ +P +D
Sbjct: 61 FIRGSVVRYVVLPRSEVD 78
>POMBASE|SPCC1620.01c [details] [associations]
symbol:lsm2 "U6 snRNP-associated protein core protein
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] InterPro:IPR016654 PIRSF:PIRSF016394
PomBase:SPCC1620.01c INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681 GO:GO:0003723
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
GO:GO:0046540 GO:GO:0045292 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
PIR:T41031 RefSeq:NP_588459.1 ProteinModelPortal:O94408
STRING:O94408 EnsemblFungi:SPCC1620.01c.1 GeneID:2538804
KEGG:spo:SPCC1620.01c OrthoDB:EOG469V4G NextBio:20799986
Uniprot:O94408
Length = 96
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP--- 57
ML S KT + VELKN + G L + D ++N+ L + D ++ M
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVV--DASKYPHMAAVK 58
Query: 58 ECYIRGNTIKYLRVPDEVIDKVQEETKSRSD 88
+ +IRG+ ++Y+ + +D + R D
Sbjct: 59 DLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
>DICTYBASE|DDB_G0275719 [details] [associations]
symbol:lsm6 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0275719
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000013
GO:GO:0008033 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 RefSeq:XP_643590.1 HSSP:P54999
ProteinModelPortal:Q552U1 STRING:Q552U1 EnsemblProtists:DDB0233198
GeneID:8620177 KEGG:ddi:DDB_G0275719 KO:K12625 OMA:EQTEEYL
Uniprot:Q552U1
Length = 88
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 5 SLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGN 64
+ K G P++V+L NG Y G L D MNI + + +G + +C++RGN
Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTE-EYLNGQLKTKYGDCFLRGN 77
Query: 65 TIKYL 69
+ Y+
Sbjct: 78 NVLYI 82
>POMBASE|SPBC3E7.14 [details] [associations]
symbol:smf1 "Sm snRNP core protein Smf1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609
PomBase:SPBC3E7.14 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GO:GO:0000395 KO:K11098
PIR:T40388 RefSeq:NP_596101.1 ProteinModelPortal:O59734 SMR:O59734
IntAct:O59734 STRING:O59734 PRIDE:O59734 EnsemblFungi:SPBC3E7.14.1
GeneID:2540330 KEGG:spo:SPBC3E7.14 OMA:EMLLRNN OrthoDB:EOG4GJ2ZZ
NextBio:20801459 Uniprot:O59734
Length = 78
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
P L+ G P+LV LK G+ Y G L + D++MN+ L E++ K GD + E
Sbjct: 8 PKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGD----LGEI 63
Query: 60 YIRGNTIKYL 69
IR N + ++
Sbjct: 64 LIRCNNVLWV 73
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 150 97 0.00091 102 3 11 22 0.40 30
29 0.44 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 81
No. of states in DFA: 587 (62 KB)
Total size of DFA: 132 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.97u 0.10s 11.07t Elapsed: 00:00:01
Total cpu time: 10.97u 0.11s 11.08t Elapsed: 00:00:01
Start: Fri May 10 07:07:42 2013 End: Fri May 10 07:07:43 2013