BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031921
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 110/121 (90%), Positives = 114/121 (94%), Gaps = 1/121 (0%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGR-GREDGASGRQTKGIGRGLD 119
+RGNTIKYLRVPDEVIDKVQEE KSR+DRKPPGVGR R R GR+D A GRQ KGIGRG+D
Sbjct: 61 VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120
Query: 120 D 120
D
Sbjct: 121 D 121
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/138 (82%), Positives = 121/138 (87%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGRQTKGIGRGLDD 120
IRGNTIKYLRVPDEVIDKVQEETKSR+DRKPPGVGRGRGRGRE+G+ RQ +G GR +
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120
Query: 121 GGAKGAGGGRGRGGPGGK 138
AK RGRG GK
Sbjct: 121 QVAKAWVEVRGRGASAGK 138
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/120 (80%), Positives = 100/120 (83%), Gaps = 17/120 (14%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEET-KSRSDR---------------KPPGVGRGRGRGRED 104
IRGNTIKYLRVPDEVIDKVQEET KSRSDR PG GRG GRG++D
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPG-GRGIGRGQDD 119
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 85/101 (84%), Gaps = 11/101 (10%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRG 101
IRG+TIKYLR+PDE+ID V+EE +GRGRG
Sbjct: 61 IRGSTIKYLRIPDEIIDMVREEA-----------AKGRGRG 90
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 81/86 (94%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSR 86
IRG+TIKYLR+PDE+ID V+EE ++
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAK 86
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 81/86 (94%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSR 86
IRG+TIKYLR+PDE+ID V+EE ++
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAK 86
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium
discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 89/133 (66%), Gaps = 13/133 (9%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPLSLL+T QGH ++VELKNGETYNG LVNCD WMNI+L+ VI TSKD D+FW++ CY
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGRQTKGIGRGLDD 120
IRGNTIKY+ VPDE+ID V EE ++ RGRGR DG +GR
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGR----------- 109
Query: 121 GGAKGAGGGRGRG 133
+G GRGRG
Sbjct: 110 --GRGDASGRGRG 120
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 72/83 (86%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
+LPLSLLKTAQ HPMLVELKNGETYNGHL CD+WMNIHL +VI TSKDGD+F++M E Y
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61
Query: 61 IRGNTIKYLRVPDEVIDKVQEET 83
+RG+TIKYLR+P+ V+D V+ E
Sbjct: 62 VRGSTIKYLRIPETVVDLVKTEV 84
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 68/82 (82%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
MLPL+LL QG P+LVELKNGET+NGHL NCD +MN+ LREVI T DGD+F+R+PECY
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60
Query: 61 IRGNTIKYLRVPDEVIDKVQEE 82
IRGN IKYLR+ DEV+ +V ++
Sbjct: 61 IRGNNIKYLRIQDEVLSQVAKQ 82
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK----------DG 50
MLPL LL A+G M +ELKNGE G L N D WMN+ L V S+ +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 51 DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGRED 104
+ ++ E YIRG IK++++ D +IDKV+++ S ++ G G R D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQINSNNNSNSNGPGHKRYYNNRD 114
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + +E GE Y G L + MN L E + T +DG R ++ +I
Sbjct: 6 VPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFI 64
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGRQTKGIGRGLDDG 121
RGN I+++ +PD + + + R+ + G+G G G +G GRG
Sbjct: 65 RGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLG----------GLDQRGRGRGTAFR 114
Query: 122 GAKGAGGGRGRGGPGGKP 139
G GG RG PGG P
Sbjct: 115 RPMGRGGPRGMSRPGGAP 132
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ LL AQGH + +EL G TY G LV + MN+ LR+VI T G M + ++
Sbjct: 6 IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGA-VTHMDQIFV 64
Query: 62 RGNTIKYLRVPD 73
RG+ IK++ VPD
Sbjct: 65 RGSQIKFIVVPD 76
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
L + LL QGH + +EL+NG TY G L+ + MN +R++ T++DG R + + YI
Sbjct: 3 LCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYI 61
Query: 62 RGNTIKYLRVPD 73
RG+ I++L VPD
Sbjct: 62 RGSHIRFLIVPD 73
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRG 101
RG+ I++L +PD + K KS + K G G GRG+
Sbjct: 64 RGSKIRFLILPDML--KNAPMLKSMKN-KNQGSGAGRGKA 100
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRG 101
RG+ I++L +PD + K KS + K G G GRG+
Sbjct: 64 RGSKIRFLILPDML--KNAPMLKSMKN-KNQGSGAGRGKA 100
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + + T +DG R ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRG 101
RG+ I++L +PD + K KS + K G G GRG+
Sbjct: 64 RGSKIRFLILPDML--KNAPMLKSMKN-KNQGSGAGRGKA 100
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
+P+ +L A+GH + E GE Y G L+ + MN + ++ T +DG R + YI
Sbjct: 5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYI 63
Query: 62 RGNTIKYLRVPD 73
RG+ I++L +PD
Sbjct: 64 RGSKIRFLILPD 75
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2
OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFW-RMPEC 59
ML S K+ G + VELKN + G L + D ++NI L+++ +D + + C
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 60 YIRGNTIKYLRVPDEVID 77
+IRG+ ++Y+ +P E +D
Sbjct: 61 FIRGSVVRYVHLPAEDVD 78
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVP-DEV 75
C+IRG+ ++Y+++P DEV
Sbjct: 59 NCFIRGSVVRYVQLPADEV 77
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
ML S K+ G ++VELKN + G L + D ++NI L ++ T D +++ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGNTIKYLRVP-DEV 75
C+IRG+ ++Y+++P DEV
Sbjct: 59 NCFIRGSVVRYVQLPADEV 77
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73
+ELKNG +G ++ D MN HLR V T K+ + ++ IRGN I+Y+ +PD
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPD 72
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10
PE=1 SV=1
Length = 123
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRG 63
+ LL+ QG V+L++ +G + N D +MNI L +V T + G + ++ + ++ G
Sbjct: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTG 76
Query: 64 NTIKYLRVPDEV-IDKVQEETKSRSDRKPPGVGRGRGR 100
++Y+ +PD+V I E+ R G+G+GR
Sbjct: 77 RNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + D MN HL+ V T K+ D + IRGN I+Y +PD +
Sbjct: 17 IELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNNIRYFILPDSL 74
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus GN=Lsm10
PE=1 SV=1
Length = 122
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRG 63
+ LL+ QG V+L++ G + N D +MNI L V T + G + + + ++ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTG 76
Query: 64 NTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGR 109
++Y+ +PD V E + + + G G+G+GR + S R
Sbjct: 77 RNVRYVHIPDGVDITATIEQQLQIIHRVRNFG-GKGQGRREFPSKR 121
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
+ELKNG +G + + D MN HL+ V T K G + IRGN I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITSVDMQMNTHLKAVKMTVK-GREPVPVETLSIRGNNIRYYILPDSL 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,923,094
Number of Sequences: 539616
Number of extensions: 4132885
Number of successful extensions: 66946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 765
Number of HSP's that attempted gapping in prelim test: 21521
Number of HSP's gapped (non-prelim): 22355
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)