Query 031921
Match_columns 150
No_of_seqs 211 out of 1079
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_A Protein (small nuclear 100.0 5.8E-34 2E-38 212.3 8.9 89 1-90 1-90 (119)
2 2y9a_D Small nuclear ribonucle 100.0 5.7E-30 2E-34 193.1 10.1 87 1-88 4-91 (126)
3 4emh_A Probable U6 snRNA-assoc 99.9 1.8E-27 6.3E-32 174.4 8.4 85 1-85 15-99 (105)
4 1d3b_A Protein (small nuclear 99.9 1.3E-26 4.4E-31 159.9 9.5 72 1-73 4-75 (75)
5 1ljo_A Archaeal SM-like protei 99.9 3.2E-24 1.1E-28 147.8 8.6 73 1-74 4-77 (77)
6 1i4k_A Putative snRNP SM-like 99.9 1.1E-23 3.7E-28 144.8 8.5 74 1-75 3-76 (77)
7 3s6n_F Small nuclear ribonucle 99.9 2.1E-23 7.2E-28 147.3 9.2 73 2-75 6-78 (86)
8 1h64_1 SnRNP SM-like protein; 99.9 1.6E-23 5.6E-28 143.4 8.3 73 1-74 3-75 (75)
9 4emk_B U6 snRNA-associated SM- 99.9 5.6E-23 1.9E-27 141.2 6.9 72 1-73 3-74 (75)
10 1n9r_A SMF, small nuclear ribo 99.9 7.7E-23 2.6E-27 146.6 7.8 72 1-73 20-92 (93)
11 1th7_A SnRNP-2, small nuclear 99.9 1.5E-22 5.1E-27 140.7 8.9 72 2-74 9-80 (81)
12 1i8f_A Putative snRNP SM-like 99.9 1.7E-22 5.9E-27 140.6 8.4 71 1-73 10-80 (81)
13 4emk_A U6 snRNA-associated SM- 99.9 5.3E-22 1.8E-26 142.8 9.2 72 1-72 19-90 (94)
14 1mgq_A SM-like protein; LSM, R 99.9 8E-22 2.7E-26 137.9 8.0 69 1-70 14-82 (83)
15 3s6n_G Small nuclear ribonucle 99.8 1.6E-21 5.4E-26 134.4 7.7 73 2-75 4-76 (76)
16 3bw1_A SMX4 protein, U6 snRNA- 99.8 4.5E-21 1.5E-25 137.7 8.7 77 2-78 10-92 (96)
17 3s6n_E Small nuclear ribonucle 99.8 6.6E-21 2.3E-25 136.5 7.0 73 1-73 15-91 (92)
18 2fwk_A U6 snRNA-associated SM- 99.8 7.1E-21 2.4E-25 141.8 6.8 75 1-75 27-115 (121)
19 1m5q_A SMAP3, small nuclear ri 99.8 1.9E-20 6.5E-25 141.7 8.3 80 4-88 2-81 (130)
20 1d3b_B Protein (small nuclear 99.8 1.1E-20 3.8E-25 133.5 5.4 74 2-75 4-86 (91)
21 4emg_A Probable U6 snRNA-assoc 99.8 4.7E-20 1.6E-24 131.9 8.7 71 2-72 9-91 (93)
22 1b34_B Protein (small nuclear 99.8 2.1E-19 7.3E-24 133.2 8.0 75 1-75 26-115 (118)
23 4emk_C U6 snRNA-associated SM- 99.8 4.2E-19 1.4E-23 131.3 8.1 73 3-75 24-102 (113)
24 3pgw_B SM B; protein-RNA compl 99.8 3.7E-18 1.3E-22 139.9 10.4 74 2-75 4-86 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.9 7.6E-09 2.6E-13 73.3 8.0 70 5-81 10-80 (86)
26 1y96_B Gemin7, SIP3, GEM-assoc 96.9 0.0023 7.8E-08 45.1 6.3 64 3-72 20-84 (85)
27 2vxe_A CG10686-PA; EDC3, CAR-1 96.6 0.0083 2.8E-07 42.4 7.4 65 9-73 10-83 (88)
28 2ylb_A Protein HFQ; RNA-bindin 96.6 0.0027 9.4E-08 43.4 4.6 55 5-73 12-68 (74)
29 3ahu_A Protein HFQ; SM-like mo 96.5 0.005 1.7E-07 42.6 5.4 36 5-40 14-51 (78)
30 1kq1_A HFQ, HOST factor for Q 96.4 0.0054 1.9E-07 42.2 5.3 58 5-75 10-69 (77)
31 2fb7_A SM-like protein, LSM-14 96.3 0.0071 2.4E-07 43.3 5.6 71 3-73 10-89 (95)
32 4a53_A EDC3; RNA binding prote 96.3 0.0052 1.8E-07 46.0 4.7 53 7-71 7-61 (125)
33 3sb2_A Protein HFQ; SM-like, R 96.2 0.0059 2E-07 42.4 4.6 57 5-75 11-69 (79)
34 1u1s_A HFQ protein; SM-like ba 96.2 0.0087 3E-07 41.8 5.4 36 5-40 10-47 (82)
35 2y90_A Protein HFQ; RNA-bindin 96.0 0.0093 3.2E-07 43.3 4.7 57 5-75 12-70 (104)
36 2qtx_A Uncharacterized protein 95.6 0.022 7.7E-07 38.7 5.3 31 11-41 24-54 (71)
37 2vc8_A Enhancer of mRNA-decapp 95.4 0.032 1.1E-06 39.1 5.5 60 8-71 5-66 (84)
38 3hfo_A SSR3341 protein; HFQ, S 94.8 0.048 1.6E-06 36.9 4.9 36 4-39 11-48 (70)
39 3hfn_A ASL2047 protein; HFQ, S 93.1 0.15 5.2E-06 34.6 4.8 36 4-39 13-50 (72)
40 1ycy_A Conserved hypothetical 91.4 0.57 2E-05 31.4 5.9 62 5-72 9-70 (71)
41 2rm4_A CG6311-PB, DM EDC3; enh 87.3 1.5 5.1E-05 31.5 5.8 64 8-75 8-73 (103)
42 3by7_A Uncharacterized protein 76.7 10 0.00035 27.0 6.9 56 16-73 7-76 (100)
43 3rux_A BIRA bifunctional prote 72.1 4.6 0.00016 32.6 4.6 32 11-42 223-254 (270)
44 1ib8_A Conserved protein SP14. 70.5 3.8 0.00013 31.0 3.6 30 6-35 98-131 (164)
45 2xk0_A Polycomb protein PCL; t 67.8 14 0.00049 24.7 5.5 23 11-33 18-40 (69)
46 2eay_A Biotin [acetyl-COA-carb 66.2 4.2 0.00014 32.0 3.2 46 11-63 187-232 (233)
47 2ej9_A Putative biotin ligase; 63.1 14 0.00048 29.0 5.7 30 10-39 190-219 (237)
48 1bia_A BIRA bifunctional prote 60.6 15 0.00051 29.9 5.6 47 10-62 271-317 (321)
49 4hcz_A PHD finger protein 1; p 58.2 13 0.00045 24.1 3.8 25 11-35 6-30 (58)
50 2e12_A SM-like motif, hypothet 55.5 18 0.0006 25.6 4.4 18 13-30 29-46 (101)
51 1sg5_A ORF, hypothetical prote 54.6 5.1 0.00017 27.6 1.5 24 7-30 20-43 (86)
52 2m0o_A PHD finger protein 1; t 52.1 12 0.0004 25.7 3.0 25 11-35 29-53 (79)
53 2e5q_A PHD finger protein 19; 51.0 26 0.0009 23.0 4.4 25 11-35 10-34 (63)
54 3uby_A DNA-3-methyladenine gly 46.2 24 0.00081 28.2 4.4 32 5-36 18-49 (219)
55 3v4h_A Hypothetical protein; s 44.8 34 0.0012 26.2 5.0 67 3-73 91-163 (185)
56 2eqj_A Metal-response element- 44.7 28 0.00094 23.0 3.8 25 11-35 16-40 (66)
57 2e5p_A Protein PHF1, PHD finge 44.4 28 0.00096 23.2 3.8 25 11-35 12-36 (68)
58 2qqr_A JMJC domain-containing 44.2 29 0.001 25.2 4.3 35 10-44 7-43 (118)
59 1zq1_A Glutamyl-tRNA(Gln) amid 43.5 19 0.00064 31.5 3.7 41 1-41 1-52 (438)
60 2qs8_A XAA-Pro dipeptidase; am 39.8 27 0.00091 28.1 3.9 41 30-70 1-41 (418)
61 2dxu_A Biotin--[acetyl-COA-car 35.6 24 0.00081 27.7 2.9 30 11-42 188-217 (235)
62 1nh2_D Transcription initiatio 33.4 63 0.0021 23.6 4.6 30 19-48 55-87 (121)
63 3rkx_A Biotin-[acetyl-COA-carb 30.6 56 0.0019 26.7 4.4 32 10-42 277-308 (323)
64 1nvp_D Transcription initiatio 29.2 85 0.0029 22.3 4.6 29 19-47 51-82 (108)
65 2d6f_A Glutamyl-tRNA(Gln) amid 28.3 52 0.0018 28.6 4.0 38 4-42 8-53 (435)
66 3he1_A Major exported HCP3 pro 28.0 43 0.0015 25.9 3.1 65 8-75 106-182 (195)
67 1ky9_A Protease DO, DEGP, HTRA 24.9 80 0.0027 26.9 4.5 31 13-43 111-141 (448)
68 4a8c_A Periplasmic PH-dependen 24.7 83 0.0028 26.5 4.6 31 13-43 88-118 (436)
69 3mkv_A Putative amidohydrolase 23.1 82 0.0028 23.2 3.8 34 37-70 5-38 (426)
70 3sti_A Protease DEGQ; serine p 22.3 95 0.0033 24.2 4.2 31 13-43 88-118 (245)
71 3bfm_A Biotin protein ligase-l 22.2 96 0.0033 23.9 4.2 28 10-42 192-219 (235)
72 3eaa_A EVPC; T6SS, unknown fun 22.0 32 0.0011 25.5 1.3 60 10-73 75-140 (163)
73 3stj_A Protease DEGQ; serine p 20.9 98 0.0033 25.3 4.2 31 13-43 88-118 (345)
74 3feq_A Putative amidohydrolase 20.3 1.2E+02 0.0041 23.9 4.5 34 37-70 5-38 (423)
No 1
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=100.00 E-value=5.8e-34 Score=212.34 Aligned_cols=89 Identities=29% Similarity=0.487 Sum_probs=74.5
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc-cchh
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV-IDKV 79 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i-ld~~ 79 (150)
|+|++||+++++++|+|+|+|+++|+|+|.+||+||||+|+||+|+..++++ .+++++||||+||+||++||++ +|.+
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~-~~lg~v~IRG~nI~~I~~pd~l~~d~~ 79 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP-VQLETLSIRGNNIRYFILPDSLPLDTL 79 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCC-EEEEEEEECGGGEEEEECCTTCCHHHH
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCce-eEcceEEEcCCeEEEEEeccccccchh
Confidence 9999999999999999999999999999999999999999999999766654 6899999999999999999998 7877
Q ss_pred HHHhhhhcCCC
Q 031921 80 QEETKSRSDRK 90 (150)
Q Consensus 80 ~~~~~~~~~~~ 90 (150)
+.++.++++.+
T Consensus 80 l~~~~pK~k~~ 90 (119)
T 1b34_A 80 LVDVEPKVKSK 90 (119)
T ss_dssp TC---------
T ss_pred Hhhhccccccc
Confidence 77766654433
No 2
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.96 E-value=5.7e-30 Score=193.11 Aligned_cols=87 Identities=29% Similarity=0.594 Sum_probs=76.8
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccc-hh
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVID-KV 79 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ild-~~ 79 (150)
|+|++||+++++++|+|||||+++|+|+|.+||.||||+|+||+++.+++++ .+++++||||+||+||++||++.+ .+
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~-~~l~~v~IRGnnI~~I~lpd~l~~~~~ 82 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRV-AQLEQVYIRGSKIRFLILPDMLKNAPM 82 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCC-EEEEEEEECGGGEEEEECCSSCSSSSH
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcE-eecccEEEeCCEEEEEEccccccchHH
Confidence 5899999999999999999999999999999999999999999999878864 699999999999999999999954 44
Q ss_pred HHHhhhhcC
Q 031921 80 QEETKSRSD 88 (150)
Q Consensus 80 ~~~~~~~~~ 88 (150)
+.++..+.+
T Consensus 83 l~~~~~k~~ 91 (126)
T 2y9a_D 83 LKSMKNKNQ 91 (126)
T ss_dssp HHHHHHHHC
T ss_pred hhhhhhccc
Confidence 444444433
No 3
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.8e-27 Score=174.42 Aligned_cols=85 Identities=65% Similarity=1.170 Sum_probs=58.3
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchhH
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQ 80 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ild~~~ 80 (150)
+.|++||+++++++|+|+|+||++|+|+|.+||.||||+|+||+++..+++.+.+++++||||++|+||++||+++|+++
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~ 94 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVA 94 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhh
Confidence 47999999999999999999999999999999999999999999998888767899999999999999999999999988
Q ss_pred HHhhh
Q 031921 81 EETKS 85 (150)
Q Consensus 81 ~~~~~ 85 (150)
++++.
T Consensus 95 ~~~~~ 99 (105)
T 4emh_A 95 KQQAQ 99 (105)
T ss_dssp -----
T ss_pred hhhhc
Confidence 88654
No 4
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.94 E-value=1.3e-26 Score=159.86 Aligned_cols=72 Identities=33% Similarity=0.674 Sum_probs=68.7
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
|.|++||++++|++|+||||||++|+|+|.+||.|||++|+||+++.++++ ..+++++||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~-~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR-VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC-EEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc-EEEcCeEEEeCCEEEEEEcCC
Confidence 589999999999999999999999999999999999999999999987776 479999999999999999997
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.91 E-value=3.2e-24 Score=147.78 Aligned_cols=73 Identities=25% Similarity=0.463 Sum_probs=66.9
Q ss_pred CChHHHHhhcCCCcEEEEEcCC-cEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNG-ETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG-~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ 74 (150)
|.|+++|+++++++|+|+|+|| ++|+|+|.+||+||||+|+||+|+..+ +...+++.+||||+||+||++||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-EKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-EEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-CcEeECCeEEEeCCeEEEEEeCCC
Confidence 6899999999999999999999 999999999999999999999999754 445789999999999999999985
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.90 E-value=1.1e-23 Score=144.76 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=67.4
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
+.|+++|+++++++|+|+|+||++|.|+|.+||.||||+|+||+++..+. ...+++.+||||++|+||++||..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE-VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC-cEeECCEEEECCCEEEEEEeCCCC
Confidence 47999999999999999999999999999999999999999999997654 447899999999999999999863
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.89 E-value=2.1e-23 Score=147.33 Aligned_cols=73 Identities=34% Similarity=0.499 Sum_probs=66.9
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
.|++||+++++++|+|+|+||++|+|+|.+||.||||+|+||+++. +++.+.+++.+||||+||+||++||+.
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 7999999999999999999999999999999999999999999874 565567899999999999999999876
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.89 E-value=1.6e-23 Score=143.40 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=66.3
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ 74 (150)
+.|+++|+++++++|+|+|+||++|.|+|.+||.||||+|+||+++..+. ...+++.+||||++|.||+.||+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE-VVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCC-ceeECCEEEECCCEEEEEEeCCC
Confidence 36999999999999999999999999999999999999999999997654 44789999999999999999875
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.88 E-value=5.6e-23 Score=141.20 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=65.6
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
+.|++||+++++++|+|+|+||++|+|+|.+||+||||+|+||+++. +++...+++.+||||++|.||+..|
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecEEEEcCCeEEEEEecC
Confidence 37999999999999999999999999999999999999999999985 4555678999999999999998654
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=7.7e-23 Score=146.62 Aligned_cols=72 Identities=31% Similarity=0.425 Sum_probs=61.8
Q ss_pred CChHHHHhhcCCCcEEEEEcCC-cEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNG-ETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG-~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
|.|++||+++++++|+|+|+|| ++|.|+|.+||.||||+|+||+|+. +++...+++.+||||++|+||.+|+
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE-TTEEEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc-CCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 5799999999999999999999 9999999999999999999999986 4555579999999999999999886
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.88 E-value=1.5e-22 Score=140.71 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=66.0
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ 74 (150)
.|+++|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+.+ ..+++.+||||++|.||++||+
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~-~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS-GKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSC-EEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCc-eeECCEEEECCCEEEEEEecCC
Confidence 59999999999999999999999999999999999999999999976654 4789999999999999999875
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.87 E-value=1.7e-22 Score=140.57 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=66.2
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
+.|+.+|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+ +++...+++.+||||++|.||++||
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCCEEEEEEeCC
Confidence 4799999999999999999999999999999999999999999999 3445578999999999999999886
No 13
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=5.3e-22 Score=142.82 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=65.8
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lp 72 (150)
++|++||+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+++...+++.+||||+||.||+..
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 479999999999999999999999999999999999999999999974444457899999999999999854
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=8e-22 Score=137.87 Aligned_cols=69 Identities=26% Similarity=0.435 Sum_probs=64.4
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~ 70 (150)
+.|+.+|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+. ...+++.+||||++|.||+
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-VTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEEECGGGEEEEE
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCC-cccCCCEEEECCCEEEEEE
Confidence 47999999999999999999999999999999999999999999997654 4578999999999999997
No 15
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=1.6e-21 Score=134.37 Aligned_cols=73 Identities=25% Similarity=0.355 Sum_probs=53.5
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
.|.++|+++++++|+|+|+||++|+|+|.+||.||||+|+||+|+..++++ .+++.+||||++|.||+..|.+
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~-~~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ-NNIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-----CBSSEEECSSSEEEEEC----
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcE-eEcCEEEECCCeEEEEEeccCC
Confidence 467899999999999999999999999999999999999999998766654 6899999999999999987653
No 16
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.5e-21 Score=137.68 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=66.1
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccC------CCeeeecCeEEEecCeEEEEecCccc
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD------GDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d------g~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
-|+.+|+++++++|+|+|+||++|.|+|.+||+||||+|+||+|+..+ .+....++.+||||+||.||..+++.
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 599999999999999999999999999999999999999999998643 33446799999999999999999887
Q ss_pred cch
Q 031921 76 IDK 78 (150)
Q Consensus 76 ld~ 78 (150)
.|.
T Consensus 90 ~d~ 92 (96)
T 3bw1_A 90 DDG 92 (96)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.83 E-value=6.6e-21 Score=136.45 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=67.0
Q ss_pred CChHHHHhhcCCCcEEEEE----cCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 1 MLPLSLLKTAQGHPMLVEL----KNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeL----KnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
+.|++||.++++++|+|+| +||++|.|+|.+||.||||+|+||+|+..+++...+++++||||+||.||+.++
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 4799999999999999999 999999999999999999999999999766655678999999999999999765
No 18
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.83 E-value=7.1e-21 Score=141.84 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=65.9
Q ss_pred CChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccC---------CCe-----eeecCeEEEecCeE
Q 031921 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD---------GDR-----FWRMPECYIRGNTI 66 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d---------g~~-----~~~l~~v~IRG~nI 66 (150)
++|+.||+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+ ++. .++++.+||||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 5899999999999999999999999999999999999999999998743 433 46899999999999
Q ss_pred EEEecCccc
Q 031921 67 KYLRVPDEV 75 (150)
Q Consensus 67 ryI~lpd~i 75 (150)
.||...++-
T Consensus 107 v~I~~~~~~ 115 (121)
T 2fwk_A 107 AMLVPGGDP 115 (121)
T ss_dssp EEEESSSCC
T ss_pred EEEEecCCC
Confidence 999976654
No 19
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=1.9e-20 Score=141.70 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=71.3
Q ss_pred HHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchhHHHh
Q 031921 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET 83 (150)
Q Consensus 4 l~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ild~~~~~~ 83 (150)
+++|+++++++|+|+|+||++|.|+|.+||.||||+|+||+++. + .+++.+||||+||+||++|++.+|....++
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~---~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~ 76 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G---EKFNRVFIMYRYIVHIDSTERRIDMREFAK 76 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C---CEEEEEEECGGGEEEEEECCCCCCHHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C---CEeceEEEeCCeEEEEEcCCcccCHHHHHH
Confidence 68999999999999999999999999999999999999999973 3 378999999999999999999988766666
Q ss_pred hhhcC
Q 031921 84 KSRSD 88 (150)
Q Consensus 84 ~~~~~ 88 (150)
..++.
T Consensus 77 ~~~r~ 81 (130)
T 1m5q_A 77 QAEKI 81 (130)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 55443
No 20
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.81 E-value=1.1e-20 Score=133.53 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=63.6
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEcc---------CCCeeeecCeEEEecCeEEEEecC
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK---------DGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~---------dg~~~~~l~~v~IRG~nIryI~lp 72 (150)
-|..+|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+.. +......++.+||||++|.||+++
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 47889999999999999999999999999999999999999999641 233456899999999999999988
Q ss_pred ccc
Q 031921 73 DEV 75 (150)
Q Consensus 73 d~i 75 (150)
+.-
T Consensus 84 ~~~ 86 (91)
T 1d3b_B 84 GPP 86 (91)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 21
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.81 E-value=4.7e-20 Score=131.90 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=64.2
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccC----C--------CeeeecCeEEEecCeEEEE
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD----G--------DRFWRMPECYIRGNTIKYL 69 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d----g--------~~~~~l~~v~IRG~nIryI 69 (150)
.|+.||+.+++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+ + +....++.+||||+||.+|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 699999999999999999999999999999999999999999998752 3 2346899999999999999
Q ss_pred ecC
Q 031921 70 RVP 72 (150)
Q Consensus 70 ~lp 72 (150)
+.|
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.79 E-value=2.1e-19 Score=133.18 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=63.6
Q ss_pred CChHHHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccC------CCe-------eeecCeEEEecCe
Q 031921 1 MLPLSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD------GDR-------FWRMPECYIRGNT 65 (150)
Q Consensus 1 MlPl~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d------g~~-------~~~l~~v~IRG~n 65 (150)
+.|++||+.++ +++|+|+|+||++|.|+|.+||.||||+|+||+++... +++ ...++.+||||+|
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 47999999999 69999999999999999999999999999999998522 110 2358999999999
Q ss_pred EEEEecCccc
Q 031921 66 IKYLRVPDEV 75 (150)
Q Consensus 66 IryI~lpd~i 75 (150)
|.||..++..
T Consensus 106 Vv~I~~~~~~ 115 (118)
T 1b34_B 106 VIVVLRNPLI 115 (118)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeCchh
Confidence 9999988764
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.78 E-value=4.2e-19 Score=131.28 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=56.5
Q ss_pred hHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCC------CeeeecCeEEEecCeEEEEecCccc
Q 031921 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG------DRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg------~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
|+..|.++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+. +..+.++.+||||+||.||..+|..
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 677899999999999999999999999999999999999999987542 2357899999999999999987754
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.75 E-value=3.7e-18 Score=139.91 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=65.4
Q ss_pred ChHHHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEcc---------CCCeeeecCeEEEecCeEEEEecC
Q 031921 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK---------DGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~---------dg~~~~~l~~v~IRG~nIryI~lp 72 (150)
.+-.+|+++++|+|+|+|+|+++|+|+|.+||.||||+|+||+|+.. +.++..+++++||||+||.||++.
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999752 233457899999999999999987
Q ss_pred ccc
Q 031921 73 DEV 75 (150)
Q Consensus 73 d~i 75 (150)
+.-
T Consensus 84 ~pP 86 (231)
T 3pgw_B 84 GPP 86 (231)
T ss_pred CCC
Confidence 654
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.87 E-value=7.6e-09 Score=73.31 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHhhcCCCcEEEEEcCCcEEEEEEEEec-CccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchhHH
Q 031921 5 SLLKTAQGHPMLVELKNGETYNGHLVNCD-TWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQE 81 (150)
Q Consensus 5 ~lL~~l~gk~V~VeLKnG~~~~G~L~~vD-~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~ild~~~~ 81 (150)
..|+++++|+|.|.|.|+++|+|+|.+|| ...||+|.|+ .+++ ++..++|.|..|..|.+-++.-+..++
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~~~---~~~~~iI~G~aI~eI~v~~~~~~~~~~ 80 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LEDG---SMSVTGIMGHAVQTVETMNEGDHRVRE 80 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CTTS---CEEEEEECGGGEEEEEEEECCCHHHHH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----ccCC---eEEEEEEecceEEEEEEecchhHHHHh
Confidence 37899999999999999999999999999 7999999999 2333 457899999999999876655333333
No 26
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.93 E-value=0.0023 Score=45.06 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=54.1
Q ss_pred hHHHHhhcCCCcEEEEEcCCcEEEEEEEEecC-ccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031921 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~-~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lp 72 (150)
.|.+|.++.+++|.+.|+...++.++..++|. ..|+..++-. ++=| .+++..||.+-|.+|++.
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~--TPiG----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ--TPIG----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC--CTTC----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC--CCcc----cchhhhhhcCCEEEEEec
Confidence 36788999999999999999999999999995 6699888864 2333 478999999999999863
No 27
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.64 E-value=0.0083 Score=42.43 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=53.4
Q ss_pred hcCCCcEEEEEcCCcEEEEEEEEecC-ccceEEccEEEEccCCCee--------eecCeEEEecCeEEEEecCc
Q 031921 9 TAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDRF--------WRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 9 ~l~gk~V~VeLKnG~~~~G~L~~vD~-~MNl~L~dv~et~~dg~~~--------~~l~~v~IRG~nIryI~lpd 73 (150)
.++|++|.+-.|.+..|+|+|..+|. .--|.|+||...-.++.+. ..++.+..||+.|+-+.+-+
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 46899999999999999999999995 5689999999876544221 24688999999999988754
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.60 E-value=0.0027 Score=43.42 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd 73 (150)
.||+.+. ..+|+|.|.||..+.|+|.+||.|+=+.-.+ + ..+|-=..|.+|....
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~--------~------~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT--------V------SQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS--------S------EEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC--------c------eEEEEeeeEEEEeEcc
Confidence 5777776 8999999999999999999999998554321 1 2345556677776443
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.49 E-value=0.005 Score=42.59 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.1
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEE
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHL 40 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L 40 (150)
.||+.+. ..+|+|-|.||..++|+|.+||.|+=+.-
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 4677765 89999999999999999999999986554
No 30
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.43 E-value=0.0054 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
.||+.+. ..+|+|.|.||..+.|+|.+||.|+=+.-.+ +++ .+|-=..|.+|.....+
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~-------g~~------qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ-------GKQ------HLIYKHAISTYTVETEG 69 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET-------TEE------EEEEGGGEEEEEC----
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC-------Cee------EEEEeeeEEEEeECccc
Confidence 4677776 8999999999999999999999998655432 322 23445567777644433
No 31
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.34 E-value=0.0071 Score=43.34 Aligned_cols=71 Identities=23% Similarity=0.128 Sum_probs=53.9
Q ss_pred hHHHHhhcCCCcEEEEEcCCcEEEEEEEEecC-ccceEEccEEEEccCCCe--------eeecCeEEEecCeEEEEecCc
Q 031921 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDR--------FWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~-~MNl~L~dv~et~~dg~~--------~~~l~~v~IRG~nIryI~lpd 73 (150)
|...-..++|++|.+-.|.+..|+|+|..+|. ---|.|+||..+-.++.+ ...++.++.||+-|+-+.+-+
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 34455678999999999999999999999995 668999999887644321 135789999999999988743
No 32
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.25 E-value=0.0052 Score=45.99 Aligned_cols=53 Identities=28% Similarity=0.261 Sum_probs=40.8
Q ss_pred HhhcCCCcEEEEEcCCcEEEEEEEEecCccceEE--ccEEEEccCCCeeeecCeEEEecCeEEEEec
Q 031921 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL--REVICTSKDGDRFWRMPECYIRGNTIKYLRV 71 (150)
Q Consensus 7 L~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L--~dv~et~~dg~~~~~l~~v~IRG~nIryI~l 71 (150)
+..++|+.|.|+|+|+.+++|+|..|| --+|+| ++|.+.. . .|+.+.|.-+.+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~~s~-------~----~I~asdI~DLkV 61 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLANDST-------K----SIVTKDIKDLRI 61 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETTTEE-------E----EEEGGGEEEEEE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEecccccccc-------c----eeecccccceee
Confidence 356789999999999999999999998 445666 9884321 1 677777776654
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.24 E-value=0.0059 Score=42.35 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=41.4
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
.||+.+. ..+|+|.|.||..+.|+|.+||.|+=+. + ++++ .+|-=..|.+|.....+
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g~~------qLIYKhAISTI~P~~~v 69 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NTVT------QMVYKHAISTVVPARAV 69 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SSSE------EEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CCce------EEEEeeeEEEEeecCce
Confidence 4666665 6779999999999999999999998654 2 2322 24555678887755444
No 34
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.22 E-value=0.0087 Score=41.80 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.8
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEE
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHL 40 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L 40 (150)
.||+.+. ..+|+|-|.||..++|+|.+||.|+=+.-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 4677665 88999999999999999999999986553
No 35
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.95 E-value=0.0093 Score=43.33 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031921 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
.||+.+. ..+|+|.|.||..+.|+|.+||.|+=+.-.+ ...+|-=..|.+|.....+
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~--------------kqqLIYKHAISTI~p~~~v 70 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT--------------VSQMVYKHAISTVVPSRPV 70 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS--------------SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC--------------ceEEEEeeeeEEEeecccc
Confidence 5777776 5699999999999999999999998555422 1134555677887755444
No 36
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.65 E-value=0.022 Score=38.68 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCccceEEc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLR 41 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~ 41 (150)
...+|+|-|.||..++|+|.+||.|+=+.-.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 4788999999999999999999999866543
No 37
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=95.39 E-value=0.032 Score=39.09 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=50.1
Q ss_pred hhcCCCcEEEEEcCCc-EEEEEEEEecCc-cceEEccEEEEccCCCeeeecCeEEEecCeEEEEec
Q 031921 8 KTAQGHPMLVELKNGE-TYNGHLVNCDTW-MNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRV 71 (150)
Q Consensus 8 ~~l~gk~V~VeLKnG~-~~~G~L~~vD~~-MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~l 71 (150)
.+++|+.|.|+.++.. .|+|.|..+|.. -||+|.+|. .+|-+ ....++.+++.-|.-+.+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~-~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVK-CLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEE-CSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCC-CCCcEEEEEecChhheEE
Confidence 4678999999999999 999999999975 589999994 56753 356889999998776655
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.80 E-value=0.048 Score=36.94 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=31.2
Q ss_pred HHHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceE
Q 031921 4 LSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIH 39 (150)
Q Consensus 4 l~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~ 39 (150)
+..|++++ ..+|.|+|.||..++|.|.-+|.|+=+.
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L 48 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGL 48 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEE
Confidence 56788886 7899999999999999999999987444
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.07 E-value=0.15 Score=34.59 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHhhcC--CCcEEEEEcCCcEEEEEEEEecCccceE
Q 031921 4 LSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIH 39 (150)
Q Consensus 4 l~lL~~l~--gk~V~VeLKnG~~~~G~L~~vD~~MNl~ 39 (150)
+..|++++ .++|.|+|.+|..++|.|.-.|.++=+.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L 50 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCI 50 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEE
Confidence 56788887 6789999999999999999999987443
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=91.44 E-value=0.57 Score=31.39 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=43.8
Q ss_pred HHHhhcCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031921 5 SLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 5 ~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~lp 72 (150)
..|++-.+++|-|-.-....++|+|..||.- -|.|+||+.+. |. +-..++|+=+.|..|.|-
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~--GN---k~k~liv~idDinWimL~ 70 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVI--GN---RGKQMLIGLEDINWIMLL 70 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETT--EE---EEEEEEEEGGGEEEEEEC
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHh--cc---ccceeEEEeccceEEEee
Confidence 4577788999999999999999999999975 47899998764 33 234566776777776653
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=87.29 E-value=1.5 Score=31.51 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=50.9
Q ss_pred hhcCCCcEEEEEcCCc-EEEEEEEEecCccceEEccEEEEccCCCee-eecCeEEEecCeEEEEecCccc
Q 031921 8 KTAQGHPMLVELKNGE-TYNGHLVNCDTWMNIHLREVICTSKDGDRF-WRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 8 ~~l~gk~V~VeLKnG~-~~~G~L~~vD~~MNl~L~dv~et~~dg~~~-~~l~~v~IRG~nIryI~lpd~i 75 (150)
+..+|+.|.|...+.. .|+|.+..+|. -+|+|.++.. +|-+. ....++.++-.-|.-+.|.+..
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGiplk~~~~EVtLsa~DI~~L~IIe~~ 73 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPLRKQNAEVVLKCTDIRSIDLIEPA 73 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEECSCSSSCEEEETTTEEEEEEEECC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCcCCCCceEEEEecchhheeeeccc
Confidence 3678999999999997 99999999995 4599988874 56521 3568899999999888765444
No 42
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=76.66 E-value=10 Score=27.01 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=42.7
Q ss_pred EEEEcCCcEEEEEEEEecCccceEEccEEEEcc----CCC----------eeeecCeEEEecCeEEEEecCc
Q 031921 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSK----DGD----------RFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 16 ~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~----dg~----------~~~~l~~v~IRG~nIryI~lpd 73 (150)
.|+|++|+.+.+.+..-|.. +.++|..+..+ +++ ++...+.++||-+.|.|+.-+.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 58999999999999977764 88888887653 111 1246789999999999998553
No 43
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=72.10 E-value=4.6 Score=32.64 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCccceEEcc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~d 42 (150)
+|++|+|++.++.+++|++.++|+.=.|.|+.
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 59999999988999999999999988888764
No 44
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=70.48 E-value=3.8 Score=31.03 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHhhcCCCcEEEEEc----CCcEEEEEEEEecCc
Q 031921 6 LLKTAQGHPMLVELK----NGETYNGHLVNCDTW 35 (150)
Q Consensus 6 lL~~l~gk~V~VeLK----nG~~~~G~L~~vD~~ 35 (150)
-+..++|+.|.|+|+ +.+.++|+|.++|.-
T Consensus 98 df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 98 AVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 466889999999994 459999999999964
No 45
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=67.80 E-value=14 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=19.9
Q ss_pred CCCcEEEEEcCCcEEEEEEEEec
Q 031921 11 QGHPMLVELKNGETYNGHLVNCD 33 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD 33 (150)
+++-|+++-+||..|-|+|+...
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecC
Confidence 58999999999999999995443
No 46
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=66.20 E-value=4.2 Score=31.97 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEec
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRG 63 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG 63 (150)
+|++|+|+..++ ++|++..+|+.=.|.|+.. ++......++|.+|.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEET-----TEEEEECSCCEEEC-
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-----CCeEEEEEeEEEEec
Confidence 699999987665 9999999999988888642 222223456666664
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=63.08 E-value=14 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.0
Q ss_pred cCCCcEEEEEcCCcEEEEEEEEecCccceE
Q 031921 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIH 39 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~ 39 (150)
.+|++|+|+..++..++|++..+|+.=.|.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~ 219 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL 219 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE
Confidence 369999999988887999999999988887
No 48
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=60.59 E-value=15 Score=29.95 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=33.8
Q ss_pred cCCCcEEEEEcCCcEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEe
Q 031921 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IR 62 (150)
..|++|+|+..+ .+++|++..+|+.=.|.|+.. ++......++|.+|
T Consensus 271 ~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~-----~g~~~~~~Gev~~r 317 (321)
T 1bia_A 271 FINRPVKLIIGD-KEIFGISRGIDKQGALLLEQD-----GIIKPWMGGEISLR 317 (321)
T ss_dssp TTTSEEEEEETT-EEEEEEEEEECTTSCEEEEET-----TEEEEESSCEEEEC
T ss_pred hcCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC-----CCEEEEEeeeEEEe
Confidence 369999999765 479999999999888888632 22222345666665
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=58.16 E-value=13 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~ 35 (150)
.|+-|++.-.||..|-|||+.+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4889999999999999999999864
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=55.48 E-value=18 Score=25.65 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=16.4
Q ss_pred CcEEEEEcCCcEEEEEEE
Q 031921 13 HPMLVELKNGETYNGHLV 30 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~ 30 (150)
.+|.|+|.||+.+.||+.
T Consensus 29 ~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp CEEEEEETTSCEEEEEES
T ss_pred eEEEEEEcCCCeEeeeec
Confidence 679999999999999974
No 51
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=54.63 E-value=5.1 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.2
Q ss_pred HhhcCCCcEEEEEcCCcEEEEEEE
Q 031921 7 LKTAQGHPMLVELKNGETYNGHLV 30 (150)
Q Consensus 7 L~~l~gk~V~VeLKnG~~~~G~L~ 30 (150)
|..+...+|.|+|+||.++.|+..
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHcCCeEEEEEeCCCEEEEEEE
Confidence 456679999999999999998654
No 52
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=52.14 E-value=12 Score=25.70 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~ 35 (150)
+|+-|++.-+||..|-|+|+.+|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccC
Confidence 5889999999999999999999964
No 53
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.96 E-value=26 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~ 35 (150)
+|+-|+..-+||..|-|++..+|.+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5889999999999999999999964
No 54
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=46.19 E-value=24 Score=28.18 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=28.0
Q ss_pred HHHhhcCCCcEEEEEcCCcEEEEEEEEecCcc
Q 031921 5 SLLKTAQGHPMLVELKNGETYNGHLVNCDTWM 36 (150)
Q Consensus 5 ~lL~~l~gk~V~VeLKnG~~~~G~L~~vD~~M 36 (150)
.+=+.|+|+.++.++.++..+.|.|+.+..|+
T Consensus 18 ~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 18 PLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 34467899999999999999999999999887
No 55
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=44.75 E-value=34 Score=26.24 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=41.2
Q ss_pred hHHHHhhcCCCcE-EEEEcCCcEEEEEEEEecCccceEEccEEEEccC-----CCeeeecCeEEEecCeEEEEecCc
Q 031921 3 PLSLLKTAQGHPM-LVELKNGETYNGHLVNCDTWMNIHLREVICTSKD-----GDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 3 Pl~lL~~l~gk~V-~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d-----g~~~~~l~~v~IRG~nIryI~lpd 73 (150)
|+-+...+.|+.+ .|+|+--++ -|. -..|+.+.|+||.++..+ ......+..+.+.=..|.+-+.+.
T Consensus 91 P~L~~a~~~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q 163 (185)
T 3v4h_A 91 PNLLSYCLLGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQ 163 (185)
T ss_dssp HHHHHHHHHTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEEC
T ss_pred HHHHHHHhCCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEE
Confidence 3333333458877 677766555 453 467999999999987631 111235677888888888776654
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=44.66 E-value=28 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~ 35 (150)
+|+.|+..-.||..|.|+|..+|..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5889999999999999999999963
No 57
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.42 E-value=28 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~ 35 (150)
+|+-|+..-+||..|-|++..+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5889999999999999999999954
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=44.15 E-value=29 Score=25.20 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=27.0
Q ss_pred cCCCcEEEEEcCCcEEEEEEEEecC--ccceEEccEE
Q 031921 10 AQGHPMLVELKNGETYNGHLVNCDT--WMNIHLREVI 44 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~vD~--~MNl~L~dv~ 44 (150)
.+|++|..+-+|+..|.|+++.+.. |..+.+.|=+
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGS 43 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSC
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCC
Confidence 3699999999999999999988763 4455554433
No 59
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=43.54 E-value=19 Score=31.46 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=30.1
Q ss_pred CChHHHHhhcC---CCcEEEEEcCC---cEEEEEEEE-ec----CccceEEc
Q 031921 1 MLPLSLLKTAQ---GHPMLVELKNG---ETYNGHLVN-CD----TWMNIHLR 41 (150)
Q Consensus 1 MlPl~lL~~l~---gk~V~VeLKnG---~~~~G~L~~-vD----~~MNl~L~ 41 (150)
|.-..||+++- +..|.|+.+++ .+|+|+|+- .+ .+.=|.|+
T Consensus 1 ~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~ 52 (438)
T 1zq1_A 1 MRVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLE 52 (438)
T ss_dssp -CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEET
T ss_pred CchHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEcc
Confidence 45567888776 99999999998 899999993 33 44444444
No 60
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=39.77 E-value=27 Score=28.14 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=24.6
Q ss_pred EEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031921 30 VNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 30 ~~vD~~MNl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~ 70 (150)
+++|..|.++|+++...+.+...+..-..+.|.+..|..|.
T Consensus 1 ~~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 1 MSLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp ------CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 36778888888888877655432223357888888888884
No 61
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=35.64 E-value=24 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCcEEEEEEEEecCccceEEcc
Q 031921 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~d 42 (150)
.|++|+|+..++ ++|++..+|+.=.|.|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998777 999999999999998864
No 62
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=33.41 E-value=63 Score=23.57 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.1
Q ss_pred EcCCcEEEEEE---EEecCccceEEccEEEEcc
Q 031921 19 LKNGETYNGHL---VNCDTWMNIHLREVICTSK 48 (150)
Q Consensus 19 LKnG~~~~G~L---~~vD~~MNl~L~dv~et~~ 48 (150)
+++..++.|.| ..||..+.++|+|++....
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34556777777 5689999999999997643
No 63
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=30.55 E-value=56 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=26.4
Q ss_pred cCCCcEEEEEcCCcEEEEEEEEecCccceEEcc
Q 031921 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~d 42 (150)
.+|++|+|... +.+++|++..+|+.=.|.|++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 35999999865 568999999999999988863
No 64
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=29.23 E-value=85 Score=22.33 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred EcCCcEEEEEE---EEecCccceEEccEEEEc
Q 031921 19 LKNGETYNGHL---VNCDTWMNIHLREVICTS 47 (150)
Q Consensus 19 LKnG~~~~G~L---~~vD~~MNl~L~dv~et~ 47 (150)
+++..++.|.| ..||..+.+.|+|++...
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 34556777766 578999999999999864
No 65
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=28.30 E-value=52 Score=28.57 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=27.2
Q ss_pred HHHHhhcC---CCcEEEEEcCCcEEEEEEEE-ec----CccceEEcc
Q 031921 4 LSLLKTAQ---GHPMLVELKNGETYNGHLVN-CD----TWMNIHLRE 42 (150)
Q Consensus 4 l~lL~~l~---gk~V~VeLKnG~~~~G~L~~-vD----~~MNl~L~d 42 (150)
..||+++- +..|.|+.++ .+|+|+|+- .+ .+.=|.|+|
T Consensus 8 ~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (435)
T 2d6f_A 8 RKFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLEN 53 (435)
T ss_dssp HHHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTT
T ss_pred HHHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccC
Confidence 45677665 9999999877 999999993 33 444455544
No 66
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=28.04 E-value=43 Score=25.94 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=41.8
Q ss_pred hhcCCCcE-EEEEcCCcEE-EEEEEEecCccceEEccEEEEccC----------CCeeeecCeEEEecCeEEEEecCccc
Q 031921 8 KTAQGHPM-LVELKNGETY-NGHLVNCDTWMNIHLREVICTSKD----------GDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 8 ~~l~gk~V-~VeLKnG~~~-~G~L~~vD~~MNl~L~dv~et~~d----------g~~~~~l~~v~IRG~nIryI~lpd~i 75 (150)
..+.|+.+ .|+|+--++- .|. -..|+.|.|+||.++..+ +.....+..|.+.=..|.+-+.+...
T Consensus 106 A~~~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Issi~~~~~~~~~~~~~~~~p~E~Vsl~Y~kI~w~y~~~~~ 182 (195)
T 3he1_A 106 ALTSGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGT 182 (195)
T ss_dssp HHHHTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEEEEEEEC---------CCEEEEEEEECSEEEEEETTTCC
T ss_pred HHhCCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEEEEecccccccCCCCCCcceEEEEEEeCEEEEEEEcCCC
Confidence 33458877 6776432211 122 346999999999987632 12223578899999999998887665
No 67
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=24.89 E-value=80 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=27.0
Q ss_pred CcEEEEEcCCcEEEEEEEEecCccceEEccE
Q 031921 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv 43 (150)
..|.|.|.++.+|..++..+|...+|-|=.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999999999876544
No 68
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=24.71 E-value=83 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=27.2
Q ss_pred CcEEEEEcCCcEEEEEEEEecCccceEEccE
Q 031921 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv 43 (150)
..|.|.+.+++.|..++..+|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999988876554
No 69
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=23.07 E-value=82 Score=23.23 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=22.8
Q ss_pred ceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031921 37 NIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 37 Nl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~ 70 (150)
.++|+|+...+.+..++..-..|.|++..|..|.
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig 38 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVS 38 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEE
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEec
Confidence 5678888877654433223346888888888875
No 70
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=22.28 E-value=95 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=25.9
Q ss_pred CcEEEEEcCCcEEEEEEEEecCccceEEccE
Q 031921 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv 43 (150)
..+.|.+.++..|..++...|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4789999999999999999999888766444
No 71
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=22.21 E-value=96 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.8
Q ss_pred cCCCcEEEEEcCCcEEEEEEEEecCccceEEcc
Q 031921 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~vD~~MNl~L~d 42 (150)
.+|++|+| ++ ++|++..+|..=.|.|+.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 36999999 44 999999999999988864
No 72
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=22.04 E-value=32 Score=25.54 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=35.6
Q ss_pred cCCCcE-EEEEcCCcEEEEEEEEecCccceEEccEEEEccC-----CCeeeecCeEEEecCeEEEEecCc
Q 031921 10 AQGHPM-LVELKNGETYNGHLVNCDTWMNIHLREVICTSKD-----GDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 10 l~gk~V-~VeLKnG~~~~G~L~~vD~~MNl~L~dv~et~~d-----g~~~~~l~~v~IRG~nIryI~lpd 73 (150)
+.|+.+ .|+|+--+. -| .-..|+.+.|+||..+..+ ......+..+.++=..|.+-+.|.
T Consensus 75 ~~G~~l~~v~i~~~r~-~G---~~~~y~~i~L~~v~Is~i~~~~~~~~~~~p~E~vsl~y~kI~w~y~~q 140 (163)
T 3eaa_A 75 VQGQNFPTLELEICTQ-AG---DKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQ 140 (163)
T ss_dssp HHTCCEEEEEEEEECS-ST---TCCEEEEEEEEEEEEEEEEEECCCSSSSSCEEEEEEECSEEECCBCCB
T ss_pred hCCCccCeEEEEEEEC-CC---CeeEEEEEEEEeEEEEEEEeccccCCCCceEEEEEEEeeEeEEEEEEE
Confidence 347755 355533222 22 2457999999999987531 111235667777777777766553
No 73
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=20.94 E-value=98 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=26.4
Q ss_pred CcEEEEEcCCcEEEEEEEEecCccceEEccE
Q 031921 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~vD~~MNl~L~dv 43 (150)
..|.|.+.++..|..++..+|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999999888766444
No 74
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=20.35 E-value=1.2e+02 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=17.7
Q ss_pred ceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031921 37 NIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 37 Nl~L~dv~et~~dg~~~~~l~~v~IRG~nIryI~ 70 (150)
.+.|+|+...+.++..+..-..|.|.+..|..|.
T Consensus 5 ~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 38 (423)
T 3feq_A 5 ITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVT 38 (423)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEccEEEeCCCCcccCCceEEEECCEEEEec
Confidence 4556666655444333223345666666666653
Done!