BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031924
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62
++D L S DGTL + +L T R +++ SV + R++V GS+ T+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 63 LYS 65
L++
Sbjct: 131 LWN 133
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS 99
++ VV+ +G+ + GS GT+ L+ + RFVG + + + D ++++GS
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWD-LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 100 ENGLISLVGIL 110
+ I L L
Sbjct: 125 RDKTIKLWNTL 135
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62
++D L S DGTL + +L T R +++ SV + R++V GS+ T+
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 63 LYS 65
L++
Sbjct: 154 LWN 156
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS 99
++ VV+ +G+ + GS GT+ L+ + RFVG + + + D ++++GS
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWD-LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 100 ENGLISLVGIL 110
+ I L L
Sbjct: 148 RDKTIKLWNTL 158
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLGIAS 133
S N+VD + KLD D +I G + L V + + I PI H ++ IE + A
Sbjct: 150 SANAVDIIRKLDSDVIIFGPDKNLAHYVAKVTGKTIIPIPPEGHCYVHKKFTIEDVERAK 209
Query: 134 VL 135
L
Sbjct: 210 KL 211
>pdb|2RQY|A Chain A, Solution Structure And Dynamics Of Mouse Armet
Length = 171
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSENGLISL 106
GR ++ + Y +++D DR V SP ++ + L+K R G EN L
Sbjct: 9 EGRHMLRPGDCEVCISYLGRFYQDLKDRDVTFSPATIEEELIKF--CREARGKENRLCYY 66
Query: 107 VGI-------LPNRIIQPIAEHSEYPIESL 129
+G + N + +P+A H P+E +
Sbjct: 67 IGATDDAATKIINEVSKPLAHH--IPVEKI 94
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53
GDGT SV L ++ F EE ++S ++MK RK V
Sbjct: 95 GDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAV 133
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 70 KDCSDRFVGLSPNSVDALLK---LDEDRVITGSE 100
++ +D F+G +P +VD L K LD D+ IT SE
Sbjct: 297 RNFADVFIGANPLAVDLLEKMLVLDTDKRITASE 330
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|2B61|A Chain A, Crystal Structure Of Homoserine Transacetylase
Length = 377
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 52/149 (34%), Gaps = 35/149 (23%)
Query: 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76
G LS N+ QT ++E KN ++C + +G Y F D D
Sbjct: 39 GKLSYINV---AYQTYGTLNDE--------KNNAVLICHALTGDAEPY----FDDGRD-- 81
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGI-----------------LPNRIIQPIA 119
G N A L LD DR S N L G PN ++Q I
Sbjct: 82 -GWWQNFXGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIV 140
Query: 120 EHSEYPIESLGIASVLCFINSGFLSLNVN 148
+ + +E LGI+ + I F N
Sbjct: 141 KVQKALLEHLGISHLKAIIGGSFGGXQAN 169
>pdb|1WZU|A Chain A, Crystal Structure Of Quinolinate Synthase (Nada)
Length = 300
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118
S N+V+ + KLD D VI G + L V + + I P+
Sbjct: 126 SANAVEVVKKLDSDVVIFGPDKNLAHYVAKMTGKKIIPV 164
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 22/129 (17%)
Query: 3 FAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSE----FSEEELTSVVLMKNGRKVVC 54
F+ D L +S D T+ + +K + V + E F E E+ + + R +
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 55 GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI 114
++G + Y + LSP+ + G ENG I ++ ++ NRI
Sbjct: 956 NGRTGQI-----DYLTEAQVSCCCLSPHL---------QYIAFGDENGAIEILELVNNRI 1001
Query: 115 IQPIAEHSE 123
Q +H +
Sbjct: 1002 FQSRFQHKK 1010
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR 50
TL + N++KN V EFSE+EL+++V + +G
Sbjct: 24 TLMIKNVQKNDVNV--EFSEKELSALVKLPSGE 54
>pdb|2P4B|A Chain A, Crystal Structure Of E.Coli Rseb
pdb|2P4B|B Chain B, Crystal Structure Of E.Coli Rseb
pdb|2P4B|C Chain C, Crystal Structure Of E.Coli Rseb
pdb|3M4W|A Chain A, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|B Chain B, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|C Chain C, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|D Chain D, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
Length = 295
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 80 SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEY 124
+P+S D +L+ V T +N I++VG LP + + IAE+ ++
Sbjct: 246 TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 291
>pdb|2V42|A Chain A, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V42|B Chain B, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|C Chain C, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|A Chain A, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|B Chain B, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
Length = 303
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 80 SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEY 124
+P+S D +L+ V T +N I++VG LP + + IAE+ ++
Sbjct: 248 TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 293
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV-LLY 64
D ++GT GDGT S+ + T S F + V K+G + VC +G+ LL
Sbjct: 85 DFADIVGTGGDGTNSI------NISTASAFVAASCGAKV-AKHGNRSVCQPLAGSCDLLQ 137
Query: 65 SWGYFKDCS 73
++G D S
Sbjct: 138 AFGIRLDMS 146
>pdb|3VJJ|A Chain A, Crystal Structure Analysis Of The P9-1
pdb|3VJJ|B Chain B, Crystal Structure Analysis Of The P9-1
Length = 368
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 76 FVGLSPNSVDALLKLDEDRVITGSENGLISLVGI-LPNR----IIQPIAEHSEYPIESL 129
++G +PNS D L +++ R + S G L+G +PN+ I +A YP + L
Sbjct: 227 YLGENPNSYDRQLNIEKYRPLLISIIGYEHLIGTRVPNKEVNHIFYQLATFDNYPFDLL 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,256,734
Number of Sequences: 62578
Number of extensions: 161328
Number of successful extensions: 444
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 36
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)