Query 031924
Match_columns 150
No_of_seqs 254 out of 1227
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 07:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.3E-31 5E-36 171.6 13.6 145 1-148 121-271 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-32 1.1E-36 176.0 8.6 145 1-148 267-413 (459)
3 KOG0263 Transcription initiati 100.0 9.8E-31 2.1E-35 180.3 13.8 144 2-148 458-602 (707)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-30 3E-35 169.4 12.1 145 1-148 309-455 (459)
5 KOG0279 G protein beta subunit 100.0 1.1E-29 2.4E-34 157.8 14.7 144 1-147 69-216 (315)
6 KOG0263 Transcription initiati 100.0 6.2E-30 1.3E-34 176.4 11.7 145 1-148 499-644 (707)
7 KOG0266 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 170.5 17.2 146 1-148 209-359 (456)
8 KOG0266 WD40 repeat-containing 100.0 4.6E-28 1E-32 166.8 15.5 146 1-148 165-313 (456)
9 KOG0291 WD40-repeat-containing 100.0 1.1E-27 2.5E-32 165.3 16.3 146 1-148 356-503 (893)
10 KOG0286 G-protein beta subunit 100.0 1E-27 2.2E-32 150.1 14.6 142 6-149 155-299 (343)
11 KOG0286 G-protein beta subunit 100.0 5.6E-27 1.2E-31 146.8 15.3 146 1-148 61-254 (343)
12 KOG0285 Pleiotropic regulator 100.0 8.4E-27 1.8E-31 149.7 14.0 145 1-148 157-302 (460)
13 KOG0273 Beta-transducin family 99.9 2.5E-26 5.4E-31 151.5 15.9 146 1-149 282-478 (524)
14 KOG0315 G-protein beta subunit 99.9 2.6E-26 5.5E-31 141.3 14.4 145 1-148 89-283 (311)
15 KOG0319 WD40-repeat-containing 99.9 1.5E-26 3.4E-31 159.2 14.3 145 1-148 469-614 (775)
16 KOG0279 G protein beta subunit 99.9 7.9E-26 1.7E-30 140.8 14.9 139 1-143 111-253 (315)
17 KOG0271 Notchless-like WD40 re 99.9 1.8E-26 4E-31 149.2 12.4 138 7-147 336-475 (480)
18 KOG0645 WD40 repeat protein [G 99.9 1.9E-25 4.1E-30 138.7 16.3 146 1-148 67-220 (312)
19 KOG0284 Polyadenylation factor 99.9 3.5E-27 7.5E-32 153.2 8.5 145 1-149 144-290 (464)
20 PTZ00421 coronin; Provisional 99.9 3.2E-25 7E-30 153.1 17.6 141 1-143 81-231 (493)
21 KOG0284 Polyadenylation factor 99.9 1.9E-26 4.1E-31 149.8 9.4 145 1-148 186-332 (464)
22 KOG0295 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 143.4 13.6 145 2-149 242-402 (406)
23 KOG0285 Pleiotropic regulator 99.9 8.7E-26 1.9E-30 145.1 11.4 142 1-145 199-341 (460)
24 KOG0275 Conserved WD40 repeat- 99.9 1.2E-26 2.5E-31 148.0 7.3 146 2-149 220-374 (508)
25 KOG0645 WD40 repeat protein [G 99.9 2.6E-24 5.6E-29 133.7 15.3 147 1-149 20-176 (312)
26 KOG0315 G-protein beta subunit 99.9 1.5E-24 3.3E-29 133.5 14.0 142 2-147 47-191 (311)
27 KOG0283 WD40 repeat-containing 99.9 3.7E-25 7.9E-30 153.9 10.5 142 1-148 273-476 (712)
28 KOG0292 Vesicle coat complex C 99.9 8.1E-25 1.8E-29 153.9 11.7 146 1-149 15-161 (1202)
29 KOG0276 Vesicle coat complex C 99.9 2.3E-24 5E-29 146.9 12.8 145 1-148 103-252 (794)
30 KOG0273 Beta-transducin family 99.9 4.9E-24 1.1E-28 140.8 13.3 146 1-150 365-520 (524)
31 KOG0316 Conserved WD40 repeat- 99.9 1.5E-23 3.3E-28 128.3 13.5 142 3-149 67-209 (307)
32 KOG0269 WD40 repeat-containing 99.9 2.9E-24 6.4E-29 148.9 10.9 144 1-145 139-286 (839)
33 KOG0295 WD40 repeat-containing 99.9 4.9E-24 1.1E-28 137.0 11.1 145 2-148 115-260 (406)
34 KOG0265 U5 snRNP-specific prot 99.9 1.4E-23 3E-28 132.0 12.6 144 1-148 96-241 (338)
35 KOG0310 Conserved WD40 repeat- 99.9 3.4E-23 7.3E-28 137.1 14.6 145 2-150 117-265 (487)
36 KOG0289 mRNA splicing factor [ 99.9 5.2E-23 1.1E-27 135.0 15.2 144 2-147 310-456 (506)
37 KOG0293 WD40 repeat-containing 99.9 4E-24 8.6E-29 139.6 9.7 146 1-148 275-508 (519)
38 KOG0265 U5 snRNP-specific prot 99.9 3.8E-23 8.2E-28 130.1 13.6 144 1-148 53-199 (338)
39 cd00200 WD40 WD40 domain, foun 99.9 1.7E-22 3.7E-27 130.6 16.4 145 1-148 141-286 (289)
40 PTZ00420 coronin; Provisional 99.9 1.8E-22 3.8E-27 140.8 17.3 141 1-145 80-236 (568)
41 PLN00181 protein SPA1-RELATED; 99.9 1.9E-22 4.2E-27 147.3 18.0 145 1-148 581-733 (793)
42 KOG0277 Peroxisomal targeting 99.9 3.9E-23 8.5E-28 127.6 11.8 144 2-148 111-260 (311)
43 KOG0318 WD40 repeat stress pro 99.9 1.2E-22 2.7E-27 135.9 15.1 145 1-149 196-346 (603)
44 cd00200 WD40 WD40 domain, foun 99.9 5.5E-22 1.2E-26 128.2 17.6 145 1-148 15-160 (289)
45 KOG1407 WD40 repeat protein [F 99.9 1.2E-22 2.5E-27 126.0 13.5 144 1-147 70-255 (313)
46 KOG0306 WD40-repeat-containing 99.9 5.8E-23 1.3E-27 142.4 13.4 145 1-148 514-659 (888)
47 KOG0282 mRNA splicing factor [ 99.9 4.1E-24 8.9E-29 141.4 7.5 143 2-148 221-367 (503)
48 PTZ00421 coronin; Provisional 99.9 5.7E-22 1.2E-26 137.1 17.6 143 4-148 29-193 (493)
49 KOG0296 Angio-associated migra 99.9 1.8E-22 3.9E-27 129.9 13.7 146 1-148 154-393 (399)
50 KOG0277 Peroxisomal targeting 99.9 1.4E-22 3E-27 125.3 11.7 145 1-148 66-216 (311)
51 KOG0296 Angio-associated migra 99.9 6.3E-22 1.4E-26 127.4 14.6 145 1-148 70-215 (399)
52 KOG0291 WD40-repeat-containing 99.9 6.8E-22 1.5E-26 137.2 15.4 143 1-145 313-457 (893)
53 PLN00181 protein SPA1-RELATED; 99.9 1.6E-21 3.5E-26 142.6 17.8 142 2-148 539-685 (793)
54 KOG0281 Beta-TrCP (transducin 99.9 7.7E-23 1.7E-27 131.5 8.9 141 3-149 243-424 (499)
55 KOG0772 Uncharacterized conser 99.9 7.8E-23 1.7E-27 136.8 9.0 144 2-145 275-431 (641)
56 KOG0973 Histone transcription 99.9 2.6E-22 5.7E-27 143.1 12.2 141 1-143 75-239 (942)
57 KOG0276 Vesicle coat complex C 99.9 1.1E-21 2.3E-26 134.0 14.4 144 3-148 63-210 (794)
58 KOG0316 Conserved WD40 repeat- 99.9 7.6E-22 1.6E-26 121.0 12.2 143 2-149 24-169 (307)
59 KOG0282 mRNA splicing factor [ 99.9 1.9E-22 4E-27 133.6 10.0 146 1-148 305-500 (503)
60 KOG0278 Serine/threonine kinas 99.9 2.1E-21 4.6E-26 120.0 13.9 141 2-148 150-292 (334)
61 KOG0269 WD40 repeat-containing 99.9 1.3E-22 2.7E-27 140.9 9.5 144 2-148 94-245 (839)
62 KOG0310 Conserved WD40 repeat- 99.9 5.7E-22 1.2E-26 131.4 11.8 139 2-144 75-217 (487)
63 KOG0319 WD40-repeat-containing 99.9 5.6E-22 1.2E-26 137.0 11.5 139 7-148 424-572 (775)
64 KOG0313 Microtubule binding pr 99.9 9.5E-22 2.1E-26 127.2 11.8 142 2-148 267-413 (423)
65 KOG0640 mRNA cleavage stimulat 99.9 3.7E-22 8E-27 126.7 9.7 147 1-148 178-330 (430)
66 PTZ00420 coronin; Provisional 99.9 8.4E-21 1.8E-25 132.5 17.1 133 13-148 50-192 (568)
67 KOG0275 Conserved WD40 repeat- 99.9 1.1E-22 2.4E-27 130.0 7.1 143 1-145 269-415 (508)
68 KOG0643 Translation initiation 99.9 3.4E-21 7.3E-26 119.9 13.0 145 3-149 60-313 (327)
69 KOG0264 Nucleosome remodeling 99.9 2.9E-21 6.4E-26 126.9 13.1 147 1-149 183-343 (422)
70 KOG0292 Vesicle coat complex C 99.9 2.7E-21 5.8E-26 136.6 13.6 145 1-148 57-231 (1202)
71 KOG0267 Microtubule severing p 99.9 6.8E-23 1.5E-27 141.4 4.9 145 1-148 76-221 (825)
72 KOG0643 Translation initiation 99.9 1.6E-20 3.5E-25 116.9 14.2 144 1-146 16-213 (327)
73 KOG0973 Histone transcription 99.9 9.3E-21 2E-25 135.3 13.3 147 1-148 135-350 (942)
74 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.6E-25 119.1 12.3 117 1-120 33-155 (347)
75 KOG1407 WD40 repeat protein [F 99.9 2.2E-20 4.8E-25 115.9 13.1 141 1-145 153-294 (313)
76 KOG0305 Anaphase promoting com 99.9 7.8E-21 1.7E-25 129.0 12.2 141 1-145 223-366 (484)
77 KOG0283 WD40 repeat-containing 99.9 3.7E-21 8E-26 134.2 10.5 115 31-148 260-435 (712)
78 KOG0640 mRNA cleavage stimulat 99.9 2.2E-20 4.8E-25 118.7 12.9 144 2-148 119-286 (430)
79 KOG0308 Conserved WD40 repeat- 99.9 2.1E-20 4.5E-25 128.1 13.5 142 4-148 127-280 (735)
80 KOG0299 U3 snoRNP-associated p 99.9 2.5E-20 5.3E-25 123.1 13.3 147 1-148 208-405 (479)
81 KOG0302 Ribosome Assembly prot 99.9 7.5E-21 1.6E-25 123.1 10.4 145 1-147 217-372 (440)
82 KOG0264 Nucleosome remodeling 99.9 2.8E-20 6E-25 122.4 12.8 143 1-145 233-396 (422)
83 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-19 3.1E-24 114.6 15.3 142 1-147 20-164 (311)
84 KOG0302 Ribosome Assembly prot 99.9 4.2E-20 9E-25 119.7 12.8 144 1-145 263-431 (440)
85 KOG0294 WD40 repeat-containing 99.8 4.4E-20 9.5E-25 117.2 12.3 134 6-143 52-188 (362)
86 KOG0274 Cdc4 and related F-box 99.8 1.4E-19 3E-24 126.0 15.9 136 6-148 260-395 (537)
87 KOG0641 WD40 repeat protein [G 99.8 2.8E-19 6E-24 109.6 15.1 146 1-148 95-298 (350)
88 KOG0281 Beta-TrCP (transducin 99.8 1.4E-20 2.9E-25 121.3 9.7 136 5-148 205-383 (499)
89 KOG0305 Anaphase promoting com 99.8 8.3E-20 1.8E-24 124.1 14.0 144 1-148 307-456 (484)
90 KOG0268 Sof1-like rRNA process 99.8 5.9E-21 1.3E-25 123.1 7.9 146 1-148 193-340 (433)
91 KOG0289 mRNA splicing factor [ 99.8 1.4E-19 3.1E-24 119.1 13.1 144 2-147 268-413 (506)
92 KOG0308 Conserved WD40 repeat- 99.8 6.7E-20 1.5E-24 125.6 11.9 143 5-149 83-239 (735)
93 KOG0293 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 118.9 12.5 144 1-146 230-377 (519)
94 KOG0306 WD40-repeat-containing 99.8 1.1E-19 2.4E-24 126.4 12.8 145 1-148 460-617 (888)
95 KOG1539 WD repeat protein [Gen 99.8 3E-19 6.5E-24 125.3 14.8 141 2-145 455-639 (910)
96 KOG0318 WD40 repeat stress pro 99.8 3.3E-19 7.1E-24 119.8 14.3 144 1-147 449-596 (603)
97 KOG0647 mRNA export protein (c 99.8 2.3E-19 4.9E-24 113.4 12.6 138 1-141 78-311 (347)
98 KOG1446 Histone H3 (Lys4) meth 99.8 6E-19 1.3E-23 111.8 14.6 143 3-146 64-298 (311)
99 KOG0772 Uncharacterized conser 99.8 5.3E-20 1.1E-24 123.5 10.3 147 1-149 323-483 (641)
100 KOG0313 Microtubule binding pr 99.8 1.6E-19 3.5E-24 117.0 12.1 142 2-148 200-371 (423)
101 KOG0771 Prolactin regulatory e 99.8 1.1E-19 2.3E-24 118.9 11.0 144 1-148 150-349 (398)
102 KOG0267 Microtubule severing p 99.8 2.6E-20 5.6E-25 128.9 8.6 140 1-143 118-258 (825)
103 KOG0639 Transducin-like enhanc 99.8 8.1E-20 1.8E-24 122.5 10.5 144 1-149 515-659 (705)
104 KOG0641 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 105.7 15.6 145 1-146 38-254 (350)
105 KOG0303 Actin-binding protein 99.8 4.2E-19 9.2E-24 115.8 12.5 140 1-143 87-236 (472)
106 KOG0646 WD40 repeat protein [G 99.8 6.6E-19 1.4E-23 116.6 13.2 143 2-147 88-241 (476)
107 KOG0288 WD40 repeat protein Ti 99.8 9.9E-20 2.1E-24 119.0 8.4 147 1-148 225-456 (459)
108 KOG1332 Vesicle coat complex C 99.8 1.8E-19 4E-24 111.0 8.9 141 6-147 69-235 (299)
109 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 114.9 13.2 139 7-148 256-399 (463)
110 KOG0639 Transducin-like enhanc 99.8 4.8E-20 1E-24 123.6 6.1 143 3-149 473-618 (705)
111 KOG0300 WD40 repeat-containing 99.8 5.8E-19 1.2E-23 112.9 10.5 135 3-140 280-415 (481)
112 KOG0274 Cdc4 and related F-box 99.8 4.3E-18 9.2E-23 118.7 15.3 136 7-148 218-354 (537)
113 KOG1273 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 109.9 12.2 147 1-148 29-221 (405)
114 KOG1274 WD40 repeat protein [G 99.8 6.8E-18 1.5E-22 119.5 15.0 147 1-148 102-257 (933)
115 KOG1188 WD40 repeat protein [G 99.8 3.3E-18 7.1E-23 109.7 12.0 141 8-150 41-193 (376)
116 KOG0294 WD40 repeat-containing 99.8 7.4E-18 1.6E-22 107.2 12.8 144 3-149 91-277 (362)
117 KOG1332 Vesicle coat complex C 99.8 1.6E-17 3.4E-22 102.6 13.2 141 5-148 21-188 (299)
118 PF08662 eIF2A: Eukaryotic tra 99.8 4.9E-17 1.1E-21 100.7 15.1 136 1-144 11-164 (194)
119 KOG2055 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 109.4 14.1 149 1-149 219-413 (514)
120 KOG1036 Mitotic spindle checkp 99.8 1.7E-17 3.6E-22 105.1 12.8 135 7-144 65-295 (323)
121 KOG0301 Phospholipase A2-activ 99.8 9.7E-18 2.1E-22 115.8 12.6 134 5-149 150-284 (745)
122 KOG1009 Chromatin assembly com 99.8 3.9E-18 8.5E-23 111.4 10.0 142 2-145 20-187 (434)
123 KOG0646 WD40 repeat protein [G 99.8 4.3E-17 9.3E-22 108.1 14.8 146 1-149 129-303 (476)
124 KOG0278 Serine/threonine kinas 99.8 2.7E-18 5.8E-23 106.5 7.0 143 1-149 106-250 (334)
125 KOG4283 Transcription-coupled 99.8 6.5E-17 1.4E-21 102.5 12.9 139 6-148 55-214 (397)
126 KOG1445 Tumor-specific antigen 99.7 1.4E-17 3.1E-22 114.9 10.0 142 1-144 633-785 (1012)
127 KOG2096 WD40 repeat protein [G 99.7 5.2E-17 1.1E-21 103.9 11.7 141 2-144 235-394 (420)
128 KOG0301 Phospholipase A2-activ 99.7 3.9E-17 8.5E-22 112.9 11.3 130 9-147 114-243 (745)
129 KOG2055 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 105.8 12.5 147 1-148 350-507 (514)
130 KOG2048 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 108.4 14.3 145 1-147 116-269 (691)
131 KOG1036 Mitotic spindle checkp 99.7 3.3E-16 7.2E-21 99.3 13.2 134 1-143 19-153 (323)
132 KOG1007 WD repeat protein TSSC 99.7 1.8E-16 4E-21 100.1 11.6 143 2-147 177-355 (370)
133 KOG2106 Uncharacterized conser 99.7 3.8E-16 8.2E-21 105.0 13.4 138 2-146 375-514 (626)
134 KOG2919 Guanine nucleotide-bin 99.7 2.4E-16 5.2E-21 100.9 11.8 141 1-143 213-360 (406)
135 KOG1408 WD40 repeat protein [F 99.7 4.5E-17 9.7E-22 113.6 8.9 146 1-147 465-707 (1080)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.9E-15 4.1E-20 99.2 16.3 133 8-145 2-136 (300)
137 KOG2096 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 98.9 13.3 146 1-149 92-254 (420)
138 KOG4283 Transcription-coupled 99.7 2.5E-16 5.5E-21 99.9 11.2 142 3-148 109-271 (397)
139 KOG0299 U3 snoRNP-associated p 99.7 1.4E-16 3.1E-21 105.6 10.5 143 1-146 148-309 (479)
140 KOG0268 Sof1-like rRNA process 99.7 9.7E-17 2.1E-21 103.9 9.4 137 8-148 80-297 (433)
141 KOG0322 G-protein beta subunit 99.7 1E-16 2.2E-21 100.1 9.1 138 9-148 167-318 (323)
142 KOG1034 Transcriptional repres 99.7 7.3E-16 1.6E-20 98.8 12.3 145 2-147 142-377 (385)
143 KOG1007 WD repeat protein TSSC 99.7 5.3E-16 1.1E-20 98.1 11.5 144 1-148 129-284 (370)
144 KOG0321 WD40 repeat-containing 99.7 5.8E-16 1.3E-20 106.5 12.4 146 1-147 106-295 (720)
145 KOG1034 Transcriptional repres 99.7 4E-15 8.6E-20 95.5 14.6 139 6-147 53-205 (385)
146 KOG2919 Guanine nucleotide-bin 99.7 6.8E-16 1.5E-20 98.9 10.9 146 1-149 164-323 (406)
147 KOG4328 WD40 protein [Function 99.7 6.8E-16 1.5E-20 102.5 11.2 146 1-149 192-395 (498)
148 KOG2394 WD40 protein DMR-N9 [G 99.7 1.2E-16 2.6E-21 108.0 7.9 86 1-88 296-381 (636)
149 KOG2445 Nuclear pore complex c 99.7 1.2E-14 2.5E-19 92.7 15.3 71 75-148 218-313 (361)
150 KOG1523 Actin-related protein 99.7 1.9E-15 4E-20 96.6 11.5 148 1-150 16-173 (361)
151 KOG0300 WD40 repeat-containing 99.7 3.6E-16 7.9E-21 100.2 8.3 138 7-146 160-337 (481)
152 KOG1274 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 105.8 13.3 143 4-148 63-213 (933)
153 KOG1538 Uncharacterized conser 99.7 7.7E-15 1.7E-19 102.2 14.1 65 1-66 18-82 (1081)
154 KOG2394 WD40 protein DMR-N9 [G 99.7 4.4E-15 9.5E-20 100.6 11.9 130 1-133 225-384 (636)
155 KOG0288 WD40 repeat protein Ti 99.6 6.8E-16 1.5E-20 101.4 7.7 144 2-149 182-367 (459)
156 KOG2048 WD40 repeat protein [G 99.6 2.5E-14 5.5E-19 99.0 15.5 144 1-148 75-228 (691)
157 KOG1063 RNA polymerase II elon 99.6 5.7E-15 1.2E-19 102.5 11.9 146 1-148 531-694 (764)
158 KOG1445 Tumor-specific antigen 99.6 8.7E-16 1.9E-20 106.2 7.9 142 6-149 590-746 (1012)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 9E-14 1.9E-18 91.3 17.0 141 1-147 36-181 (300)
160 KOG1524 WD40 repeat-containing 99.6 5.1E-15 1.1E-19 100.6 10.9 134 2-142 111-245 (737)
161 KOG0290 Conserved WD40 repeat- 99.6 2.2E-14 4.7E-19 90.9 13.0 135 6-143 162-356 (364)
162 KOG2110 Uncharacterized conser 99.6 4.2E-14 9E-19 92.0 14.0 141 6-149 96-244 (391)
163 KOG0642 Cell-cycle nuclear pro 99.6 1.1E-14 2.3E-19 99.0 11.5 146 1-148 300-556 (577)
164 KOG4378 Nuclear protein COP1 [ 99.6 3.3E-14 7.1E-19 95.9 12.4 144 2-148 128-275 (673)
165 KOG4378 Nuclear protein COP1 [ 99.6 8.4E-15 1.8E-19 98.7 9.3 141 6-148 90-234 (673)
166 KOG1273 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 93.0 9.6 93 40-136 26-119 (405)
167 KOG3881 Uncharacterized conser 99.6 5.4E-14 1.2E-18 92.0 12.3 138 9-148 163-315 (412)
168 KOG0649 WD40 repeat protein [G 99.6 1.7E-13 3.8E-18 85.1 13.9 129 2-135 121-258 (325)
169 KOG0303 Actin-binding protein 99.6 1.4E-14 3.1E-19 95.0 9.5 140 7-149 44-199 (472)
170 KOG0270 WD40 repeat-containing 99.6 1.7E-14 3.8E-19 95.5 9.1 138 7-148 192-355 (463)
171 KOG1310 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 96.8 10.7 145 1-146 56-224 (758)
172 KOG0307 Vesicle coat complex C 99.6 6.5E-15 1.4E-19 106.7 7.6 143 1-144 70-228 (1049)
173 COG2319 FOG: WD40 repeat [Gene 99.6 4.3E-13 9.4E-18 90.8 16.2 142 1-145 161-306 (466)
174 KOG0650 WD40 repeat nucleolar 99.6 1.5E-14 3.3E-19 99.2 8.8 147 1-149 572-731 (733)
175 KOG1539 WD repeat protein [Gen 99.6 1.8E-13 3.9E-18 96.9 14.2 137 7-146 172-311 (910)
176 KOG0307 Vesicle coat complex C 99.6 1.1E-14 2.3E-19 105.6 7.8 145 2-148 168-322 (1049)
177 KOG1009 Chromatin assembly com 99.6 1.8E-14 3.8E-19 94.6 8.0 143 1-146 71-253 (434)
178 KOG4328 WD40 protein [Function 99.6 9.7E-14 2.1E-18 92.5 11.3 147 1-147 328-489 (498)
179 PF08662 eIF2A: Eukaryotic tra 99.5 4.4E-13 9.5E-18 83.1 12.8 110 1-118 65-186 (194)
180 KOG1408 WD40 repeat protein [F 99.5 1.1E-13 2.3E-18 97.2 11.0 108 1-110 602-713 (1080)
181 KOG0649 WD40 repeat protein [G 99.5 7.5E-13 1.6E-17 82.4 13.4 142 2-148 17-181 (325)
182 KOG0974 WD-repeat protein WDR6 99.5 3.7E-13 8.1E-18 97.0 13.4 142 3-148 141-283 (967)
183 KOG1063 RNA polymerase II elon 99.5 2.3E-13 4.9E-18 94.7 10.9 145 1-147 367-596 (764)
184 KOG1272 WD40-repeat-containing 99.5 5.1E-14 1.1E-18 94.1 7.4 138 2-143 216-354 (545)
185 KOG1188 WD40 repeat protein [G 99.5 7.8E-13 1.7E-17 85.4 11.8 128 6-135 83-223 (376)
186 KOG1272 WD40-repeat-containing 99.5 1.2E-13 2.7E-18 92.3 8.2 144 2-148 136-318 (545)
187 PRK01742 tolB translocation pr 99.5 9.5E-13 2.1E-17 90.9 12.6 137 1-143 209-352 (429)
188 COG2319 FOG: WD40 repeat [Gene 99.5 6.7E-12 1.4E-16 85.0 16.2 141 4-148 119-266 (466)
189 KOG1523 Actin-related protein 99.5 7.3E-13 1.6E-17 85.0 10.6 147 1-148 61-231 (361)
190 PRK01742 tolB translocation pr 99.5 1.3E-12 2.8E-17 90.3 12.4 138 1-147 253-395 (429)
191 PRK11028 6-phosphogluconolacto 99.5 8.6E-12 1.9E-16 83.5 15.8 140 1-143 40-194 (330)
192 KOG2106 Uncharacterized conser 99.5 1.3E-12 2.8E-17 88.4 11.4 144 2-148 414-576 (626)
193 KOG3881 Uncharacterized conser 99.5 1.4E-12 3E-17 85.5 10.9 130 2-134 209-342 (412)
194 KOG0650 WD40 repeat nucleolar 99.5 4.7E-13 1E-17 92.1 9.1 144 1-148 527-675 (733)
195 KOG4227 WD40 repeat protein [G 99.4 6.7E-12 1.5E-16 83.0 12.9 148 1-149 62-221 (609)
196 KOG1517 Guanine nucleotide bin 99.4 4.3E-12 9.2E-17 92.5 12.8 141 2-143 1172-1324(1387)
197 PRK02889 tolB translocation pr 99.4 8.5E-12 1.8E-16 86.2 13.9 139 2-144 202-348 (427)
198 KOG1240 Protein kinase contain 99.4 1.6E-11 3.5E-16 90.5 15.6 138 5-143 1059-1261(1431)
199 KOG0771 Prolactin regulatory e 99.4 1.6E-12 3.4E-17 85.8 9.2 105 41-148 148-306 (398)
200 KOG2139 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 80.3 13.5 139 1-142 201-364 (445)
201 PRK11028 6-phosphogluconolacto 99.4 4.4E-11 9.6E-16 80.1 16.3 139 1-143 85-247 (330)
202 PRK05137 tolB translocation pr 99.4 1.5E-11 3.3E-16 85.2 14.4 136 2-143 208-353 (435)
203 KOG0321 WD40 repeat-containing 99.4 3E-12 6.5E-17 88.7 10.6 139 7-148 64-243 (720)
204 PF02239 Cytochrom_D1: Cytochr 99.4 3.6E-11 7.7E-16 81.4 15.5 137 2-142 43-190 (369)
205 KOG2111 Uncharacterized conser 99.4 2.8E-11 6.1E-16 77.7 13.9 139 8-148 105-251 (346)
206 KOG1517 Guanine nucleotide bin 99.4 4.2E-12 9.1E-17 92.5 11.3 141 6-149 1220-1377(1387)
207 KOG0644 Uncharacterized conser 99.4 3.9E-13 8.4E-18 95.7 5.7 139 2-146 197-339 (1113)
208 KOG2110 Uncharacterized conser 99.4 1.5E-11 3.2E-16 80.3 12.5 109 2-111 134-249 (391)
209 KOG1963 WD40 repeat protein [G 99.4 1.8E-11 3.8E-16 87.2 13.3 142 2-147 167-316 (792)
210 PRK03629 tolB translocation pr 99.4 2.2E-11 4.7E-16 84.2 13.5 140 2-146 249-396 (429)
211 KOG0280 Uncharacterized conser 99.4 2.9E-11 6.3E-16 77.0 12.5 131 1-134 127-264 (339)
212 KOG0290 Conserved WD40 repeat- 99.4 2.1E-11 4.6E-16 77.7 11.7 108 2-111 103-228 (364)
213 KOG1524 WD40 repeat-containing 99.4 6.2E-12 1.3E-16 86.0 9.6 133 8-146 76-209 (737)
214 KOG2321 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 85.1 10.6 140 3-146 183-336 (703)
215 KOG1587 Cytoplasmic dynein int 99.4 4.6E-11 1E-15 83.8 12.9 144 2-148 249-467 (555)
216 PRK03629 tolB translocation pr 99.4 1.1E-10 2.3E-15 80.8 14.6 136 2-143 205-350 (429)
217 KOG1310 WD40 repeat protein [G 99.3 4E-12 8.8E-17 87.1 7.3 115 31-148 44-173 (758)
218 PRK02889 tolB translocation pr 99.3 5.6E-11 1.2E-15 82.2 12.6 138 2-144 246-391 (427)
219 KOG2139 WD40 repeat protein [G 99.3 5.3E-11 1.1E-15 77.9 11.5 140 1-145 104-260 (445)
220 KOG2445 Nuclear pore complex c 99.3 5E-11 1.1E-15 76.5 11.0 113 34-148 10-139 (361)
221 KOG0642 Cell-cycle nuclear pro 99.3 5.5E-12 1.2E-16 86.1 7.0 116 32-149 289-422 (577)
222 PRK04922 tolB translocation pr 99.3 1.4E-10 3.1E-15 80.4 13.7 135 2-143 254-398 (433)
223 KOG4547 WD40 repeat-containing 99.3 2.6E-10 5.7E-15 78.4 14.3 132 6-142 69-208 (541)
224 KOG1538 Uncharacterized conser 99.3 1E-11 2.3E-16 87.0 7.6 100 39-144 14-114 (1081)
225 KOG0644 Uncharacterized conser 99.3 8.1E-13 1.8E-17 94.1 2.2 103 30-135 183-286 (1113)
226 KOG1963 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 82.3 13.8 140 2-145 212-367 (792)
227 PRK04922 tolB translocation pr 99.3 2.3E-10 5E-15 79.3 14.1 136 2-143 210-355 (433)
228 TIGR02800 propeller_TolB tol-p 99.3 2.5E-10 5.3E-15 78.8 14.2 137 2-144 196-342 (417)
229 KOG3914 WD repeat protein WDR4 99.3 3E-11 6.4E-16 79.6 9.0 99 17-118 132-231 (390)
230 KOG2321 WD40 repeat protein [G 99.3 1.6E-10 3.4E-15 79.7 12.5 130 9-140 147-290 (703)
231 KOG4547 WD40 repeat-containing 99.3 5.3E-10 1.1E-14 76.9 14.5 141 4-146 2-167 (541)
232 KOG0322 G-protein beta subunit 99.2 1.4E-11 3E-16 77.5 5.0 66 1-66 257-322 (323)
233 KOG2111 Uncharacterized conser 99.2 2.8E-10 6E-15 73.3 10.9 102 9-111 150-257 (346)
234 PRK01029 tolB translocation pr 99.2 1.3E-09 2.8E-14 75.5 14.8 137 2-141 237-388 (428)
235 PRK05137 tolB translocation pr 99.2 7.9E-10 1.7E-14 76.8 13.7 135 2-143 252-396 (435)
236 KOG2695 WD40 repeat protein [G 99.2 5.9E-11 1.3E-15 77.3 7.3 129 3-133 260-402 (425)
237 PF00400 WD40: WD domain, G-be 99.2 8E-11 1.7E-15 54.0 5.9 38 28-65 2-39 (39)
238 PRK04792 tolB translocation pr 99.2 1.8E-09 4E-14 75.2 14.6 136 2-143 224-369 (448)
239 PF02239 Cytochrom_D1: Cytochr 99.2 2.9E-09 6.3E-14 72.3 15.1 129 8-139 6-144 (369)
240 PRK00178 tolB translocation pr 99.2 2.1E-09 4.4E-14 74.6 14.3 136 2-143 205-350 (430)
241 KOG2315 Predicted translation 99.2 2.7E-09 5.8E-14 73.4 14.2 119 17-144 251-375 (566)
242 KOG4497 Uncharacterized conser 99.2 2.8E-09 6.1E-14 69.4 13.3 145 1-150 54-237 (447)
243 KOG1587 Cytoplasmic dynein int 99.2 7.3E-10 1.6E-14 78.0 11.1 145 2-148 354-511 (555)
244 KOG0974 WD-repeat protein WDR6 99.2 1.8E-09 4E-14 78.6 13.3 138 5-147 97-240 (967)
245 KOG4497 Uncharacterized conser 99.2 4E-10 8.8E-15 73.2 8.9 136 2-143 15-153 (447)
246 TIGR02800 propeller_TolB tol-p 99.1 4.1E-09 8.9E-14 72.8 13.8 138 1-145 239-386 (417)
247 PRK04792 tolB translocation pr 99.0 2.3E-08 5E-13 69.8 13.8 135 2-143 268-412 (448)
248 COG4946 Uncharacterized protei 99.0 5.2E-08 1.1E-12 66.5 14.7 130 5-139 369-504 (668)
249 PF10282 Lactonase: Lactonase, 99.0 2.2E-07 4.8E-12 62.9 17.7 142 1-143 149-311 (345)
250 PRK00178 tolB translocation pr 99.0 3.5E-08 7.6E-13 68.6 14.1 135 2-143 249-393 (430)
251 KOG4227 WD40 repeat protein [G 99.0 4.6E-09 1E-13 70.0 9.2 116 31-147 50-173 (609)
252 COG4946 Uncharacterized protei 99.0 1.4E-07 3.1E-12 64.4 15.7 134 6-146 331-466 (668)
253 KOG1064 RAVE (regulator of V-A 99.0 2.2E-09 4.9E-14 82.5 7.7 113 4-119 2217-2375(2439)
254 KOG0280 Uncharacterized conser 99.0 1.2E-07 2.5E-12 61.0 13.9 139 9-149 87-237 (339)
255 KOG2695 WD40 repeat protein [G 98.9 3.2E-09 6.9E-14 69.4 6.5 130 11-144 228-367 (425)
256 PF10282 Lactonase: Lactonase, 98.9 5.2E-07 1.1E-11 61.1 17.0 147 1-147 42-216 (345)
257 KOG1240 Protein kinase contain 98.9 1.8E-08 3.9E-13 75.2 9.8 87 22-110 1034-1128(1431)
258 KOG2041 WD40 repeat protein [G 98.9 1.8E-08 3.8E-13 71.9 9.3 138 1-141 20-174 (1189)
259 PRK04043 tolB translocation pr 98.9 4E-07 8.7E-12 63.1 15.3 134 2-143 194-338 (419)
260 KOG4532 WD40-like repeat conta 98.9 3.8E-07 8.2E-12 58.2 13.5 134 2-136 165-315 (344)
261 KOG1334 WD40 repeat protein [G 98.9 3.8E-09 8.3E-14 71.7 4.9 145 2-148 288-461 (559)
262 PRK01029 tolB translocation pr 98.9 1.6E-07 3.5E-12 65.2 12.9 129 2-135 287-426 (428)
263 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.5E-13 46.6 4.8 37 71-108 2-39 (39)
264 KOG4532 WD40-like repeat conta 98.8 3E-07 6.6E-12 58.6 12.0 126 9-136 130-263 (344)
265 PRK04043 tolB translocation pr 98.8 5.5E-07 1.2E-11 62.4 14.3 134 2-143 239-387 (419)
266 PLN02919 haloacid dehalogenase 98.8 8.9E-07 1.9E-11 67.6 16.5 147 1-148 688-883 (1057)
267 KOG1275 PAB-dependent poly(A) 98.8 8.2E-08 1.8E-12 70.0 10.2 141 5-149 185-338 (1118)
268 KOG4714 Nucleoporin [Nuclear s 98.8 1.7E-08 3.6E-13 63.9 5.7 138 7-147 101-248 (319)
269 PF11768 DUF3312: Protein of u 98.8 2.8E-07 6.1E-12 64.2 11.3 87 21-111 240-330 (545)
270 PF15492 Nbas_N: Neuroblastoma 98.8 3.8E-06 8.2E-11 54.0 15.5 139 2-143 4-167 (282)
271 PF15492 Nbas_N: Neuroblastoma 98.8 3.5E-06 7.6E-11 54.2 15.2 147 1-148 49-254 (282)
272 PF08450 SGL: SMP-30/Gluconola 98.8 5.5E-06 1.2E-10 53.5 16.4 135 1-140 91-243 (246)
273 KOG4190 Uncharacterized conser 98.7 1.1E-07 2.4E-12 66.3 8.8 138 6-147 746-900 (1034)
274 KOG1409 Uncharacterized conser 98.7 7.2E-08 1.6E-12 63.2 7.4 68 1-68 203-271 (404)
275 KOG1912 WD40 repeat protein [G 98.7 6.4E-07 1.4E-11 64.7 12.5 133 2-139 22-172 (1062)
276 COG2706 3-carboxymuconate cycl 98.7 2.8E-06 6E-11 56.1 14.5 139 1-139 45-206 (346)
277 KOG3914 WD repeat protein WDR4 98.7 7.2E-07 1.6E-11 59.5 11.9 142 2-148 69-218 (390)
278 KOG1354 Serine/threonine prote 98.7 1.7E-07 3.8E-12 61.6 8.5 145 2-148 171-354 (433)
279 KOG1334 WD40 repeat protein [G 98.7 1.1E-07 2.3E-12 65.0 7.6 147 1-148 148-307 (559)
280 KOG2315 Predicted translation 98.7 6.3E-07 1.4E-11 62.1 11.2 109 1-116 276-395 (566)
281 COG2706 3-carboxymuconate cycl 98.7 9E-06 1.9E-10 53.8 15.4 141 1-143 94-263 (346)
282 PLN02919 haloacid dehalogenase 98.7 1.8E-06 4E-11 66.0 14.1 112 1-114 745-892 (1057)
283 KOG4714 Nucleoporin [Nuclear s 98.7 6E-08 1.3E-12 61.4 4.9 93 18-111 160-255 (319)
284 PRK02888 nitrous-oxide reducta 98.6 3.8E-06 8.3E-11 60.0 13.8 123 16-142 295-450 (635)
285 KOG2444 WD40 repeat protein [G 98.6 3.2E-07 7E-12 57.1 7.4 127 12-141 35-163 (238)
286 TIGR03300 assembly_YfgL outer 98.6 2.8E-06 6.1E-11 58.2 12.5 134 7-148 241-374 (377)
287 KOG0309 Conserved WD40 repeat- 98.6 2.1E-07 4.5E-12 66.8 7.0 135 1-136 120-258 (1081)
288 PF11768 DUF3312: Protein of u 98.6 3.1E-07 6.6E-12 64.1 7.7 64 2-67 266-329 (545)
289 KOG1409 Uncharacterized conser 98.6 7.4E-07 1.6E-11 58.6 8.9 99 12-111 170-271 (404)
290 PF04053 Coatomer_WDAD: Coatom 98.6 8E-06 1.7E-10 56.9 14.1 127 1-144 38-165 (443)
291 PF08553 VID27: VID27 cytoplas 98.5 5.4E-06 1.2E-10 61.1 13.1 134 7-143 493-638 (794)
292 TIGR02658 TTQ_MADH_Hv methylam 98.5 4.4E-05 9.6E-10 51.7 16.0 111 6-120 11-146 (352)
293 KOG2314 Translation initiation 98.5 2.4E-06 5.2E-11 59.6 10.1 134 1-140 216-363 (698)
294 KOG1645 RING-finger-containing 98.5 6E-06 1.3E-10 55.5 11.3 75 1-76 199-275 (463)
295 KOG2066 Vacuolar assembly/sort 98.5 1.1E-05 2.3E-10 58.6 12.9 134 6-144 82-226 (846)
296 KOG4640 Anaphase-promoting com 98.4 1.3E-06 2.8E-11 61.6 7.5 70 1-71 26-96 (665)
297 KOG1354 Serine/threonine prote 98.4 2.4E-06 5.2E-11 56.4 7.8 107 2-110 220-359 (433)
298 COG0823 TolB Periplasmic compo 98.4 8E-06 1.7E-10 56.7 10.4 137 2-143 199-345 (425)
299 PF14783 BBS2_Mid: Ciliary BBS 98.4 5.5E-05 1.2E-09 42.3 11.9 99 40-147 2-108 (111)
300 KOG2314 Translation initiation 98.4 1.2E-05 2.7E-10 56.2 10.9 124 19-147 427-561 (698)
301 KOG2041 WD40 repeat protein [G 98.4 4.6E-06 9.9E-11 60.2 9.0 110 36-147 13-139 (1189)
302 KOG1064 RAVE (regulator of V-A 98.4 1.9E-06 4E-11 67.4 7.3 74 34-118 2333-2406(2439)
303 PF04762 IKI3: IKI3 family; I 98.4 2.6E-05 5.6E-10 59.1 13.0 138 2-143 82-276 (928)
304 PF04762 IKI3: IKI3 family; I 98.4 2.3E-05 5.1E-10 59.3 12.7 131 1-135 215-360 (928)
305 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00012 2.6E-09 47.1 13.9 108 7-119 23-132 (354)
306 smart00320 WD40 WD40 repeats. 98.3 3.1E-06 6.8E-11 37.4 5.2 38 28-65 3-40 (40)
307 KOG1275 PAB-dependent poly(A) 98.3 7.8E-06 1.7E-10 60.2 9.2 132 7-145 147-288 (1118)
308 COG5354 Uncharacterized protei 98.3 6.4E-05 1.4E-09 52.2 12.9 136 2-146 229-382 (561)
309 KOG3621 WD40 repeat-containing 98.3 7.6E-06 1.6E-10 58.5 8.6 108 39-148 35-149 (726)
310 KOG2395 Protein involved in va 98.3 2.3E-05 4.9E-10 54.8 10.6 134 6-143 344-491 (644)
311 TIGR03300 assembly_YfgL outer 98.3 8.7E-05 1.9E-09 50.9 13.4 109 6-119 64-172 (377)
312 KOG2114 Vacuolar assembly/sort 98.3 3.4E-05 7.4E-10 56.6 11.1 135 2-137 30-185 (933)
313 COG0823 TolB Periplasmic compo 98.2 2.3E-05 5E-10 54.5 10.0 136 2-141 244-387 (425)
314 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00015 3.3E-09 40.6 12.1 89 8-105 16-109 (111)
315 COG5170 CDC55 Serine/threonine 98.2 1.1E-05 2.5E-10 52.8 7.6 142 2-146 179-360 (460)
316 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00034 7.3E-09 47.5 14.8 112 3-118 201-338 (352)
317 PF07433 DUF1513: Protein of u 98.2 0.00045 9.7E-09 45.7 14.9 140 1-142 10-181 (305)
318 PF13360 PQQ_2: PQQ-like domai 98.2 0.0002 4.4E-09 45.8 13.4 111 6-120 35-150 (238)
319 KOG1832 HIV-1 Vpr-binding prot 98.2 1.7E-06 3.6E-11 63.7 3.9 143 1-147 1107-1254(1516)
320 COG5354 Uncharacterized protei 98.2 3E-05 6.6E-10 53.7 9.4 131 1-145 280-421 (561)
321 PF07433 DUF1513: Protein of u 98.2 0.00065 1.4E-08 45.0 15.5 54 2-55 57-116 (305)
322 KOG1645 RING-finger-containing 98.1 1.3E-05 2.7E-10 54.0 6.8 91 19-112 175-268 (463)
323 KOG4640 Anaphase-promoting com 98.1 3.5E-05 7.6E-10 54.7 8.1 94 37-133 20-115 (665)
324 KOG0309 Conserved WD40 repeat- 98.0 1.7E-05 3.6E-10 57.5 5.8 144 2-147 74-226 (1081)
325 COG3391 Uncharacterized conser 98.0 0.0019 4E-08 44.7 16.0 137 1-141 121-270 (381)
326 KOG3621 WD40 repeat-containing 98.0 9.7E-05 2.1E-09 53.1 9.1 109 2-111 40-155 (726)
327 PF08450 SGL: SMP-30/Gluconola 98.0 0.0015 3.2E-08 42.3 17.0 136 2-146 6-157 (246)
328 PRK11138 outer membrane biogen 97.9 0.0009 1.9E-08 46.4 13.0 131 7-147 256-388 (394)
329 KOG0882 Cyclophilin-related pe 97.9 0.00035 7.6E-09 48.1 10.1 144 2-147 60-225 (558)
330 PF13360 PQQ_2: PQQ-like domai 97.9 0.0022 4.7E-08 41.1 15.1 106 6-116 121-236 (238)
331 KOG3617 WD40 and TPR repeat-co 97.9 0.00011 2.4E-09 54.4 7.8 67 1-67 65-131 (1416)
332 KOG1912 WD40 repeat protein [G 97.8 7.9E-05 1.7E-09 54.4 6.6 130 9-139 439-580 (1062)
333 KOG1920 IkappaB kinase complex 97.8 0.0016 3.4E-08 50.0 13.4 138 2-143 75-261 (1265)
334 KOG2066 Vacuolar assembly/sort 97.8 0.00019 4.1E-09 52.5 8.1 95 38-145 40-139 (846)
335 COG5170 CDC55 Serine/threonine 97.8 0.0004 8.7E-09 45.8 8.5 106 35-143 170-300 (460)
336 KOG4190 Uncharacterized conser 97.8 3.9E-05 8.4E-10 54.1 4.1 108 13-122 800-918 (1034)
337 PRK02888 nitrous-oxide reducta 97.7 0.0046 1E-07 45.0 13.6 140 3-147 200-398 (635)
338 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.0034 7.4E-08 40.7 11.3 63 7-69 63-125 (354)
339 COG3386 Gluconolactonase [Carb 97.7 0.0068 1.5E-07 40.7 13.1 131 3-137 118-269 (307)
340 PRK11138 outer membrane biogen 97.6 0.0034 7.5E-08 43.5 12.2 111 6-119 68-187 (394)
341 KOG1008 Uncharacterized conser 97.6 1.5E-05 3.2E-10 56.8 0.5 130 2-135 109-255 (783)
342 KOG2079 Vacuolar assembly/sort 97.6 0.00032 6.9E-09 53.0 7.1 94 8-103 100-198 (1206)
343 smart00320 WD40 WD40 repeats. 97.6 0.00015 3.3E-09 31.5 3.7 34 74-108 6-40 (40)
344 COG3391 Uncharacterized conser 97.6 0.0099 2.1E-07 41.2 14.6 133 2-139 80-222 (381)
345 KOG2079 Vacuolar assembly/sort 97.6 0.00059 1.3E-08 51.7 8.3 97 48-145 98-197 (1206)
346 KOG0882 Cyclophilin-related pe 97.6 0.00031 6.8E-09 48.4 6.1 140 6-147 19-168 (558)
347 PF03178 CPSF_A: CPSF A subuni 97.6 0.005 1.1E-07 41.5 11.8 101 7-110 98-202 (321)
348 KOG3617 WD40 and TPR repeat-co 97.6 0.00026 5.7E-09 52.5 5.8 103 40-147 18-125 (1416)
349 PF03178 CPSF_A: CPSF A subuni 97.5 0.012 2.6E-07 39.7 13.7 128 17-148 62-197 (321)
350 KOG2444 WD40 repeat protein [G 97.5 0.00061 1.3E-08 43.0 6.2 103 7-111 70-178 (238)
351 KOG1920 IkappaB kinase complex 97.5 0.003 6.6E-08 48.6 10.5 108 1-112 201-324 (1265)
352 PF08553 VID27: VID27 cytoplas 97.4 0.0038 8.3E-08 46.8 10.5 97 9-109 544-646 (794)
353 PF12894 Apc4_WD40: Anaphase-p 97.4 0.0011 2.4E-08 31.3 4.8 30 37-66 11-40 (47)
354 PF02897 Peptidase_S9_N: Proly 97.3 0.028 6.1E-07 39.3 13.0 109 2-112 130-262 (414)
355 TIGR02604 Piru_Ver_Nterm putat 97.3 0.029 6.3E-07 38.7 14.2 137 1-142 19-202 (367)
356 PF04841 Vps16_N: Vps16, N-ter 97.2 0.034 7.3E-07 39.0 16.1 47 18-66 62-108 (410)
357 cd00216 PQQ_DH Dehydrogenases 97.2 0.023 5E-07 40.8 12.4 105 9-120 303-434 (488)
358 PF06977 SdiA-regulated: SdiA- 97.2 0.024 5.3E-07 36.9 15.0 65 1-66 27-93 (248)
359 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.034 7.3E-07 38.1 12.6 145 1-147 189-351 (353)
360 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00053 1.1E-08 51.3 3.9 79 31-111 1095-1176(1516)
361 KOG2114 Vacuolar assembly/sort 97.1 0.062 1.4E-06 40.5 13.6 115 2-119 132-252 (933)
362 PF00780 CNH: CNH domain; Int 97.1 0.037 8.1E-07 36.4 14.7 125 4-135 4-150 (275)
363 COG3490 Uncharacterized protei 97.1 0.041 8.8E-07 36.4 13.1 142 1-143 73-245 (366)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.072 1.6E-06 38.7 14.1 47 91-137 471-517 (527)
365 PRK13616 lipoprotein LpqB; Pro 97.0 0.055 1.2E-06 39.8 12.4 130 2-140 356-513 (591)
366 PF04053 Coatomer_WDAD: Coatom 97.0 0.072 1.6E-06 37.8 13.0 56 7-66 117-172 (443)
367 PF08596 Lgl_C: Lethal giant l 97.0 0.062 1.3E-06 37.5 12.0 108 39-147 3-167 (395)
368 PF12894 Apc4_WD40: Anaphase-p 96.9 0.002 4.3E-08 30.4 3.4 25 1-25 17-41 (47)
369 KOG2377 Uncharacterized conser 96.9 0.074 1.6E-06 37.6 12.4 130 7-140 34-170 (657)
370 COG5167 VID27 Protein involved 96.9 0.039 8.5E-07 39.5 10.8 135 5-142 477-622 (776)
371 KOG3630 Nuclear pore complex, 96.9 0.01 2.3E-07 45.8 8.2 137 3-141 108-261 (1405)
372 PRK13616 lipoprotein LpqB; Pro 96.8 0.057 1.2E-06 39.7 11.3 96 38-140 350-464 (591)
373 cd00216 PQQ_DH Dehydrogenases 96.8 0.1 2.3E-06 37.5 12.5 110 7-119 61-192 (488)
374 KOG1897 Damage-specific DNA bi 96.7 0.072 1.6E-06 40.8 11.3 126 18-147 751-892 (1096)
375 KOG2395 Protein involved in va 96.7 0.036 7.9E-07 39.6 9.2 94 12-109 399-499 (644)
376 KOG4441 Proteins containing BT 96.6 0.19 4.1E-06 37.0 13.1 136 7-147 285-440 (571)
377 KOG4499 Ca2+-binding protein R 96.5 0.1 2.3E-06 33.7 12.6 96 38-134 158-264 (310)
378 KOG1008 Uncharacterized conser 96.5 0.001 2.2E-08 47.9 0.9 106 2-110 161-275 (783)
379 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.015 3.3E-07 39.8 6.3 62 4-67 1-71 (353)
380 PF05096 Glu_cyclase_2: Glutam 96.3 0.15 3.3E-06 33.5 15.5 129 8-141 101-249 (264)
381 PF14583 Pectate_lyase22: Olig 96.3 0.2 4.3E-06 34.8 11.5 68 2-69 42-112 (386)
382 PF14870 PSII_BNR: Photosynthe 96.3 0.19 4E-06 33.9 15.3 136 3-143 152-295 (302)
383 PF07569 Hira: TUP1-like enhan 96.2 0.077 1.7E-06 34.0 8.1 63 4-67 19-95 (219)
384 PHA02713 hypothetical protein; 96.2 0.33 7.3E-06 35.6 13.1 133 6-145 351-523 (557)
385 COG3386 Gluconolactonase [Carb 96.1 0.23 5E-06 33.6 12.4 134 2-141 31-180 (307)
386 PF06977 SdiA-regulated: SdiA- 96.1 0.2 4.2E-06 32.8 12.2 107 32-140 16-134 (248)
387 PF10313 DUF2415: Uncharacteri 96.0 0.041 8.8E-07 25.4 4.4 30 38-67 1-33 (43)
388 KOG1916 Nuclear protein, conta 95.9 0.011 2.5E-07 44.6 3.7 108 6-115 194-328 (1283)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 0.38 8.3E-06 33.9 10.9 84 34-118 304-406 (415)
390 PHA02713 hypothetical protein; 95.9 0.47 1E-05 34.9 13.7 93 6-101 303-408 (557)
391 TIGR02276 beta_rpt_yvtn 40-res 95.9 0.058 1.3E-06 24.3 5.6 31 5-35 1-32 (42)
392 PF12234 Rav1p_C: RAVE protein 95.8 0.54 1.2E-05 35.0 12.9 107 39-147 31-152 (631)
393 PF05096 Glu_cyclase_2: Glutam 95.7 0.32 7E-06 32.0 12.7 110 3-118 52-165 (264)
394 KOG2247 WD40 repeat-containing 95.5 0.003 6.4E-08 44.4 -0.3 134 2-141 41-177 (615)
395 PF14870 PSII_BNR: Photosynthe 95.5 0.45 9.8E-06 32.1 15.2 108 34-144 141-253 (302)
396 PF07569 Hira: TUP1-like enhan 95.5 0.35 7.5E-06 31.0 8.8 64 45-110 18-95 (219)
397 PF02897 Peptidase_S9_N: Proly 95.5 0.53 1.1E-05 33.1 10.5 103 40-145 126-248 (414)
398 TIGR03074 PQQ_membr_DH membran 95.4 0.9 1.9E-05 34.8 12.6 109 7-118 194-352 (764)
399 COG4590 ABC-type uncharacteriz 95.4 0.094 2E-06 37.1 6.3 136 3-142 228-376 (733)
400 PF08596 Lgl_C: Lethal giant l 95.3 0.63 1.4E-05 32.7 12.7 62 6-67 96-173 (395)
401 PF05694 SBP56: 56kDa selenium 95.3 0.66 1.4E-05 32.9 12.6 95 16-111 221-343 (461)
402 PF14781 BBS2_N: Ciliary BBSom 95.3 0.29 6.2E-06 28.7 12.5 110 3-118 6-133 (136)
403 KOG4499 Ca2+-binding protein R 95.3 0.12 2.7E-06 33.3 6.1 46 2-47 218-263 (310)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 0.88 1.9E-05 33.3 12.0 109 7-118 69-197 (527)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.39 8.5E-06 33.9 8.8 85 1-88 7-115 (415)
406 KOG1916 Nuclear protein, conta 95.0 0.05 1.1E-06 41.4 4.4 104 17-123 153-283 (1283)
407 PF12234 Rav1p_C: RAVE protein 95.0 1.1 2.4E-05 33.5 12.2 56 11-66 45-103 (631)
408 PF10647 Gmad1: Lipoprotein Lp 94.9 0.63 1.4E-05 30.5 14.4 140 2-145 30-187 (253)
409 PF06433 Me-amine-dh_H: Methyl 94.9 0.77 1.7E-05 31.5 13.6 109 2-114 42-170 (342)
410 PF10168 Nup88: Nuclear pore c 94.9 0.47 1E-05 36.0 9.1 67 1-68 90-180 (717)
411 PHA03098 kelch-like protein; P 94.9 1.1 2.3E-05 32.8 13.6 134 6-144 342-497 (534)
412 PF04841 Vps16_N: Vps16, N-ter 94.8 0.67 1.5E-05 32.7 9.3 49 60-111 62-110 (410)
413 PF15390 DUF4613: Domain of un 94.7 0.64 1.4E-05 34.1 8.9 107 1-109 62-185 (671)
414 COG3490 Uncharacterized protei 94.7 0.22 4.7E-06 33.2 6.2 55 2-56 120-180 (366)
415 KOG4441 Proteins containing BT 94.5 1.4 3.1E-05 32.6 13.3 133 6-145 332-486 (571)
416 COG3204 Uncharacterized protei 94.4 0.98 2.1E-05 30.3 13.4 110 1-110 91-210 (316)
417 PF11715 Nup160: Nucleoporin N 94.3 0.4 8.7E-06 35.1 7.7 28 91-118 229-256 (547)
418 PF10647 Gmad1: Lipoprotein Lp 94.3 0.96 2.1E-05 29.7 11.4 98 39-142 25-130 (253)
419 COG3823 Glutamine cyclotransfe 94.2 0.89 1.9E-05 29.1 12.1 53 89-142 183-248 (262)
420 PF14583 Pectate_lyase22: Olig 93.9 1.5 3.3E-05 30.6 10.6 118 22-140 15-141 (386)
421 PHA03098 kelch-like protein; P 93.8 1.9 4.1E-05 31.5 14.3 105 7-113 295-417 (534)
422 KOG2280 Vacuolar assembly/sort 93.6 2.4 5.3E-05 32.2 11.3 32 87-118 223-254 (829)
423 PF15390 DUF4613: Domain of un 93.6 2.2 4.9E-05 31.5 10.9 65 2-66 119-185 (671)
424 PF08728 CRT10: CRT10; InterP 93.2 2.8 6.1E-05 31.9 10.1 101 7-109 114-245 (717)
425 PF14727 PHTB1_N: PTHB1 N-term 93.1 2.3 5E-05 30.3 13.9 139 6-148 36-199 (418)
426 COG5167 VID27 Protein involved 93.0 1.4 3.1E-05 32.0 8.1 60 48-110 572-632 (776)
427 smart00564 PQQ beta-propeller 92.5 0.41 9E-06 20.1 3.9 26 93-118 7-32 (33)
428 PRK10115 protease 2; Provision 92.5 3.8 8.3E-05 31.2 14.0 105 2-109 133-254 (686)
429 PF11715 Nup160: Nucleoporin N 92.4 1.5 3.2E-05 32.2 8.1 66 6-72 157-252 (547)
430 PF07676 PD40: WD40-like Beta 92.2 0.54 1.2E-05 20.8 4.9 30 35-64 6-38 (39)
431 PF14781 BBS2_N: Ciliary BBSom 91.8 1.7 3.6E-05 25.6 9.7 97 42-143 3-116 (136)
432 KOG3630 Nuclear pore complex, 91.7 0.86 1.9E-05 36.1 6.1 90 2-93 162-255 (1405)
433 PRK13684 Ycf48-like protein; P 91.5 3.3 7.2E-05 28.5 15.0 137 2-143 179-322 (334)
434 PF07250 Glyoxal_oxid_N: Glyox 91.5 2.8 6E-05 27.5 9.3 126 19-145 48-191 (243)
435 PRK13684 Ycf48-like protein; P 91.2 3.5 7.6E-05 28.3 13.0 102 37-143 172-279 (334)
436 KOG2247 WD40 repeat-containing 91.2 0.046 1E-06 38.8 -0.6 99 1-101 80-179 (615)
437 PF14761 HPS3_N: Hermansky-Pud 91.1 2 4.3E-05 27.5 6.5 59 8-67 29-96 (215)
438 PF01011 PQQ: PQQ enzyme repea 90.3 0.92 2E-05 20.0 4.4 27 9-35 2-28 (38)
439 KOG2377 Uncharacterized conser 90.3 5.4 0.00012 28.9 8.5 90 1-93 72-166 (657)
440 COG3204 Uncharacterized protei 90.2 4.2 9.1E-05 27.5 9.5 104 34-139 82-196 (316)
441 TIGR02171 Fb_sc_TIGR02171 Fibr 90.1 4.6 0.0001 31.6 8.6 63 9-71 321-389 (912)
442 PF14761 HPS3_N: Hermansky-Pud 90.1 3.5 7.6E-05 26.4 7.0 46 92-140 29-76 (215)
443 COG1520 FOG: WD40-like repeat 89.9 5 0.00011 27.9 11.6 106 9-117 70-178 (370)
444 PLN00033 photosystem II stabil 89.9 5.4 0.00012 28.3 15.1 103 36-143 279-390 (398)
445 TIGR03118 PEPCTERM_chp_1 conse 89.7 4.8 0.0001 27.4 11.9 110 1-110 28-170 (336)
446 PF12657 TFIIIC_delta: Transcr 89.7 3.3 7.1E-05 25.5 7.6 29 39-67 87-121 (173)
447 PHA02790 Kelch-like protein; P 89.3 6.6 0.00014 28.5 13.8 129 6-144 318-456 (480)
448 KOG1898 Splicing factor 3b, su 89.0 11 0.00023 30.3 10.0 105 2-109 940-1047(1205)
449 PF03088 Str_synth: Strictosid 88.9 1.3 2.7E-05 24.1 3.9 40 99-140 34-73 (89)
450 PF12768 Rax2: Cortical protei 88.7 5.5 0.00012 26.8 12.4 94 16-111 15-124 (281)
451 PF10214 Rrn6: RNA polymerase 88.6 9.9 0.00021 29.5 11.4 68 1-69 151-234 (765)
452 PF03088 Str_synth: Strictosid 88.6 2.1 4.5E-05 23.3 4.6 41 14-55 34-74 (89)
453 KOG1897 Damage-specific DNA bi 88.2 12 0.00025 29.8 11.4 95 15-109 846-941 (1096)
454 PHA02790 Kelch-like protein; P 87.5 9.1 0.0002 27.8 14.3 103 7-113 272-387 (480)
455 PF07995 GSDH: Glucose / Sorbo 86.8 8.1 0.00018 26.6 11.3 27 39-66 3-29 (331)
456 KOG4460 Nuclear pore complex, 86.4 6 0.00013 29.1 6.9 67 2-68 110-199 (741)
457 PF13570 PQQ_3: PQQ-like domai 85.6 2.2 4.8E-05 18.9 3.4 21 6-26 20-40 (40)
458 TIGR03548 mutarot_permut cycli 84.7 10 0.00022 25.8 13.6 62 6-68 123-195 (323)
459 PF01436 NHL: NHL repeat; Int 84.4 2 4.4E-05 17.5 4.3 25 40-64 4-28 (28)
460 PF10168 Nup88: Nuclear pore c 83.9 18 0.00039 28.0 12.7 73 39-111 86-180 (717)
461 KOG3616 Selective LIM binding 83.6 5.7 0.00012 30.7 6.0 32 36-67 13-44 (1636)
462 PF07995 GSDH: Glucose / Sorbo 83.5 12 0.00026 25.7 7.4 57 6-62 270-330 (331)
463 PF14269 Arylsulfotran_2: Aryl 83.4 12 0.00025 25.5 7.3 63 4-66 152-219 (299)
464 PF08954 DUF1900: Domain of un 83.1 5.8 0.00013 23.5 4.9 46 3-48 18-67 (136)
465 COG5276 Uncharacterized conser 82.8 13 0.00027 25.5 14.3 132 7-144 96-234 (370)
466 TIGR02604 Piru_Ver_Nterm putat 82.8 14 0.0003 25.8 9.9 100 38-142 14-142 (367)
467 TIGR03606 non_repeat_PQQ dehyd 81.8 17 0.00038 26.4 15.9 49 1-49 35-90 (454)
468 PF06433 Me-amine-dh_H: Methyl 81.7 15 0.00033 25.5 13.4 107 2-112 101-215 (342)
469 PF14779 BBS1: Ciliary BBSome 80.7 14 0.0003 24.6 7.5 57 8-64 196-255 (257)
470 PF05787 DUF839: Bacterial pro 80.3 7.8 0.00017 28.6 5.7 20 36-55 500-519 (524)
471 PF13449 Phytase-like: Esteras 79.7 17 0.00037 24.9 14.0 99 39-139 86-230 (326)
472 PF01731 Arylesterase: Arylest 77.2 9.5 0.00021 20.6 6.4 48 17-67 36-84 (86)
473 PF13449 Phytase-like: Esteras 76.2 22 0.00048 24.4 10.9 104 37-141 19-164 (326)
474 PLN02153 epithiospecifier prot 75.8 23 0.0005 24.4 14.8 25 89-113 191-228 (341)
475 KOG2280 Vacuolar assembly/sort 75.7 36 0.00077 26.5 9.1 80 59-143 64-147 (829)
476 TIGR03548 mutarot_permut cycli 74.3 25 0.00053 24.0 14.7 96 48-145 123-234 (323)
477 PF05935 Arylsulfotrans: Aryls 74.0 32 0.00069 25.2 11.5 79 15-99 126-208 (477)
478 PF08728 CRT10: CRT10; InterP 72.3 27 0.00058 27.1 6.7 62 5-66 175-245 (717)
479 PF10214 Rrn6: RNA polymerase 71.9 46 0.001 26.1 10.5 94 39-134 147-257 (765)
480 COG3211 PhoX Predicted phospha 71.8 14 0.00031 27.5 5.0 55 1-55 505-571 (616)
481 PLN02193 nitrile-specifier pro 70.4 39 0.00085 24.6 14.9 95 17-113 244-354 (470)
482 TIGR03118 PEPCTERM_chp_1 conse 70.3 33 0.00071 23.7 7.1 75 55-133 218-307 (336)
483 KOG1520 Predicted alkaloid syn 70.0 36 0.00078 24.1 10.5 44 98-143 195-238 (376)
484 PF00780 CNH: CNH domain; Int 68.8 30 0.00066 22.7 13.8 106 4-114 44-169 (275)
485 TIGR03606 non_repeat_PQQ dehyd 65.4 51 0.0011 24.1 7.3 57 6-62 368-430 (454)
486 PF06739 SBBP: Beta-propeller 64.9 12 0.00026 16.6 2.6 20 126-145 15-34 (38)
487 TIGR02171 Fb_sc_TIGR02171 Fibr 64.8 23 0.0005 28.1 5.2 51 2-52 356-413 (912)
488 PF07250 Glyoxal_oxid_N: Glyox 64.4 39 0.00084 22.4 5.7 80 57-144 7-87 (243)
489 PF05694 SBP56: 56kDa selenium 64.3 38 0.00082 24.6 5.8 26 2-27 318-344 (461)
490 PF12341 DUF3639: Protein of u 63.5 10 0.00023 15.5 3.0 25 39-65 3-27 (27)
491 PF05935 Arylsulfotrans: Aryls 63.2 57 0.0012 23.9 13.2 116 4-122 156-313 (477)
492 KOG3522 Predicted guanine nucl 63.1 47 0.001 26.3 6.3 135 6-144 546-689 (925)
493 TIGR03547 muta_rot_YjhT mutatr 62.6 48 0.001 22.8 14.4 42 59-101 168-210 (346)
494 PF11635 Med16: Mediator compl 62.5 36 0.00079 26.6 5.9 65 83-147 261-344 (753)
495 KOG1898 Splicing factor 3b, su 62.4 87 0.0019 25.7 11.5 70 43-115 939-1011(1205)
496 PF12768 Rax2: Cortical protei 62.1 21 0.00046 24.1 4.2 44 101-145 15-58 (281)
497 TIGR03547 muta_rot_YjhT mutatr 61.9 49 0.0011 22.8 13.4 55 89-144 255-331 (346)
498 KOG4460 Nuclear pore complex, 61.8 66 0.0014 24.2 11.5 74 39-113 105-201 (741)
499 TIGR03032 conserved hypothetic 61.2 47 0.001 23.1 5.6 47 6-55 212-258 (335)
500 PLN02193 nitrile-specifier pro 61.1 62 0.0013 23.6 14.6 66 48-113 328-413 (470)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.3e-31 Score=171.62 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=132.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|+++.|++|++|.++++||+.+..+....++|...|.|++|+|||+.|++|+.||+|++||....++....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999998766677788999 9
Q ss_pred ccceeEee-e-----cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-K-----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~-----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+|++++ . +..+++++++.||.+++||+..++++..+.+|.. +|++++|--+| +|.+|+.+..|.
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIk 271 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIK 271 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEE
Confidence 99999987 2 3567999999999999999999999999999988 79999997766 889999887765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.9e-32 Score=176.03 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=136.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+|++|++++.|.+.++||++++..+...++|...|.+++|.+||..+++|+.|..-+|||++ .++++-.+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEEecc-c
Confidence 5899999999999999999999999998887788999999999999999999999999999999997 5688888889 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...|..+. +|+|..+++|+.|++++|||++..+.+..+++|... |+.++|+| .|.+|+|++.++.++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-VS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-VSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-hhheEecccCCeEEEEcccCccee
Confidence 99999998 999999999999999999999988899999999995 99999999 789999999998876
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=9.8e-31 Score=180.27 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=136.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|+.++|+++++|+++|+|.+.+.......++|..+|.++.|+|.|-+|++++.|++.++|... ..+..+.+.+ |-
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRifag-hl 535 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRIFAG-HL 535 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhhhcc-cc
Confidence 689999999999999999999999999988889999999999999999999999999999999985 3477888899 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-+.|+. +|+..++++|+.|.++|+||..++..++.+.+|.+ +|.+++|||+|++||+|+.++.|.
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEE
Confidence 9999988 89999999999999999999999999999999999 899999999999999999999875
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=169.36 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=135.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|.|||.++++|+-|..-+|||+++++++..+.+|..+|.+++|+|+|..+++|+.|++++|||++ ..+...++++ |
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR-~r~~ly~ipA-H 386 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR-MRSELYTIPA-H 386 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec-ccccceeccc-c
Confidence 5799999999999999999999999999999999999999999999999999999999999999997 3467888998 9
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+-|+.+. .| .|.+|++++.|+++++|..++..+++.+.+|++ .|.++++++|+++++|++.+..+.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCCceEEEeccCceee
Confidence 99999887 55 788999999999999999999999999999999 599999999999999999886653
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-29 Score=157.78 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=128.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
+..++|+++.++++.|+++++||+.+++..+++.+|...|.+++|++|.+.+++|+.|.+|++|+.. +.+..++...
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~ 146 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDS 146 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999974 5555555431
Q ss_pred cccceeEee-ecC--CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.+.|.|+. +|+ ...|++++.|++|++||+++.+....+.+|..+ ++.+++||||.++++|+-++.+
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~-v~t~~vSpDGslcasGgkdg~~ 216 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY-VNTVTVSPDGSLCASGGKDGEA 216 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc-EEEEEECCCCCEEecCCCCceE
Confidence 378899988 675 679999999999999999999999999999996 9999999999999999988754
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=6.2e-30 Score=176.37 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=137.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|-|-++++++.|++-++|.....++.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||.. .+..++.|.| |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEecC-C
Confidence 4689999999999999999999999988999999999999999999999999999999999999985 6788999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+|.++. +|+|++|++|+.||.|.+||+.+++.+..+..|.+ .|.++.|+.||..||+|+.+..|+
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEE
Confidence 99999999 99999999999999999999999999999999988 599999999999999999998875
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=170.48 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=132.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEc-CCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+|+++++++++.|++|++||+ ..++.++.+++|...|++++|+|+++.+++|+.|++|++||++. +++...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 44578899999999999999999999999999999999999974 688999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCc-ceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|+++. +++++++++++.|+.|++||+.++. +...+..++.. +++.+.|+|++.++++++.+..+.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 999999998 8899999999999999999999988 56777666553 699999999999999999886553
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=166.80 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=135.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|+|+++.+++++.++.+++|+....+ ....+.+|...|.+++|+|+++++++++.|+++++||+...+...+.+.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997777 66667889999999999999999999999999999999656688899999
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|++++ +++++++++|+.|++|++||++++++...+..|.+ +|+.++|++++++|++++.++.|.
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEE
Confidence 999999998 88999999999999999999999999999999988 799999999999999999888775
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=165.34 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=131.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++++|||+++++|+.||+|++||..++-+..++..|...|+.+.|+..|+.+++.+.||+|+.||+... +..++|..+.
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999643 7777787523
Q ss_pred ccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+....|++ .|.|.++++|+.|. .|.+|++++|+.+..+.+|++ ||.+++|+|++..|+++|.+..|.
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEE
Confidence 34444666 77899999999987 799999999999999999999 899999999999999999987764
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1e-27 Score=150.08 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=130.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+...|+++++|.+..+||+++++.+..+.+|.+.|.++.++| +++.|++|+.|+..++||++. +.+.++|.+ |+.-|
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g-hesDI 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG-HESDI 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc-ccccc
Confidence 467889999999999999999999999999999999999999 899999999999999999984 589999999 99999
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-CcceeEEEEcCCccEEEeccccccccC
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.++. .|+|.-+++|+.|++.|+||++..+.+..+.... ..+|++++||..|++|..|..+.++|+
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence 9998 9999999999999999999999988887774322 257999999999999999999988875
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=5.6e-27 Score=146.82 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=120.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY------------ 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~------------ 68 (150)
|.|++|.++|++++.||.+-|||.-+....+.+.-....|..++|+|.|+++++|+.|+...||++..
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 57999999999999999999999887666555555566666777777766666666666666666531
Q ss_pred ----------------------------------ccccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC
Q 031924 69 ----------------------------------FKDCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 69 ----------------------------------~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.++....|.+ |..-|.++. +| +++.+++|+.|+..++||++.+
T Consensus 141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 2466667778 888888888 77 8999999999999999999999
Q ss_pred eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 113 RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.+.+..|+. .|++++|.|+|.-+++|+.++..+
T Consensus 220 ~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 220 QCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ceeEeeccccc-ccceEEEccCCCeeeecCCCceeE
Confidence 99999999988 599999999999999999987654
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=8.4e-27 Score=149.71 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=136.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+++.|.++.+++|+.|++++|||+.+++....+.+|.+.+..+++++...++++++.|+.|+.||+. ..+.++.+-+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-~nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-YNKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech-hhhhHHHhcc-c
Confidence 4678999999999999999999999999999999999999999999999999999999999999996 4588889999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
-..|.|+. .|.-+.|++|+.|..+|+||+++...+..+.+|.. +|.++.+.|....+++||.+..|+
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEE
Confidence 99999999 88889999999999999999999999999999988 799999999888999999998775
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.5e-26 Score=151.54 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=124.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-----------------------------------------eeeeeccCCCc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------------------------------------VQTRSEFSEEE 39 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------------------~~~~~~~~~~~ 39 (150)
+.|+..|.+|++++.|+++.+||..++. +..++.+|.++
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 3577788888888888888888875442 22356778999
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCC---------CEEEEecCCCcEEEEec
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDE---------DRVITGSENGLISLVGI 109 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---------~~l~~~~~dg~i~~~d~ 109 (150)
|.++.|+|.|..|++++.|++++||... .......+.. |...|..+. +|.| ..+++++.|++|++||+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecC-CCcchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 9999999999999999999999999975 3466677777 887777766 5543 48899999999999999
Q ss_pred cCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 110 LPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
..+.++..+..|.. ||.+++|+|+|+++|+|+.++-|++
T Consensus 440 ~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred cCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEe
Confidence 99999999999988 8999999999999999999999875
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=141.25 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=119.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
+.|..+|+.+++|++||+++|||++...+.+. ..+..+|+++..+|+...|++|..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 35788999999999999999999998544444 456689999999999999999999999999998643
Q ss_pred -------------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 70 -------------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
-..+.+++. |...+..+. +|++++|++++.|.++++|+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 012334555 666666554 99999999999999999999987
Q ss_pred C-eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 112 N-RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. +....+..|... +...+||.||+||++|+.++.+.
T Consensus 247 ~~kle~~l~gh~rW-vWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 247 FFKLELVLTGHQRW-VWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceeeEEEeecCCce-EEeeeeccCccEEEecCCCCcee
Confidence 6 566677788885 99999999999999999987654
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=159.17 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=135.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++++|+.++|++||.|++.++|++++.+....+.+|...+.++.|+|..+.+++++.|++|+||.+.+ ..+.++|.| |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 47899999999999999999999999889999999999999999999999999999999999999964 489999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.... -.++..|++++.||.+++|++.++.+++++.+|++ .|.+++.+|....++||+.++.+.
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEE
Confidence 99998766 66889999999999999999999999999999999 699999999999999999998775
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=7.9e-26 Score=140.79 Aligned_cols=139 Identities=18% Similarity=0.209 Sum_probs=119.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+||.++|++|+.|++|++|+............ +.+.|+|+.|+|+ ...|++++.|+++++||++. .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 47999999999999999999999886643333333 2789999999998 78899999999999999973 47778888
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+ |...++.+. +|||.+.++|+.||.+.+||+..++.+..+ .|.. +|.+++|+|+--.|+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~-~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFD-IVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCC-eEeeEEecCCceeEeeccC
Confidence 9 999999888 999999999999999999999999998888 5556 6999999999887776543
No 17
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=149.18 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=126.6
Q ss_pred cceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
++.+++|+.|.++.+|+.... +++.+..+|..-|+.+.|+||++++++++-|..|++|+.+ .++.+..|.+ |-..|+
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~-tGk~lasfRG-Hv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR-TGKFLASFRG-HVAAVY 413 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC-Ccchhhhhhh-ccceeE
Confidence 457999999999999997664 4788889999999999999999999999999999999975 6799999999 999999
Q ss_pred Eee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 86 ALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 86 ~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+. +.+.++|++|+.|.++++|++++.+..+-+++|.+. |.++.|+|||..+++|+-+-.+
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE-Vf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE-VFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce-EEEEEecCCCceeecCCCceEE
Confidence 988 889999999999999999999999999999999995 9999999999999999876543
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=138.68 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=128.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~ 76 (150)
++|+|.|++|++++.|.++.||.-..+ +++..+++|+..|.|++|+++|++|++++.|+.+-+|.....+ .+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987765 4678999999999999999999999999999999999986333 455667
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEecc---CCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. |..-|+.+. +|...+|++++.|.+|++|.-. .-.+.+++..|+. .|.+++|++.|..|++++.++.|.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceE
Confidence 77 999999777 8888999999999999999765 2358899999988 599999999999999999998774
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=3.5e-27 Score=153.24 Aligned_cols=145 Identities=12% Similarity=0.184 Sum_probs=127.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|++++.++++|+.+|.|++|+..... ++.++.| .+.|++++|+|+...|++++.||+|+|||... .+....+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 5799999999999999999999987653 4444544 48999999999999999999999999999864 355566788
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|..-++++. +|...++++++.|..|++||.+++.++.++..|.. .|..+.|+|++++|+++|-+-.+..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEE
Confidence 999999998 88889999999999999999999999999999988 5999999999999999998876643
No 20
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.2e-25 Score=153.13 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=120.6
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+| ++++|++++.|++|++||+..+ +.+..+.+|...|.+++|+|++ +.|++++.|++|++||++ .++
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence 47899 8889999999999999999764 2456778999999999999985 689999999999999996 346
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
....+.+ |...|.++. ++++++|++++.|+.|++||+++++.+..+..|.+.....+.|.+++..+++++.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 6677778 889999988 8899999999999999999999998888887887643567889998887776654
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=149.84 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=133.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+|....+++++.|..|++||.+ .+.++.++.+ |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhhhhh-c
Confidence 5899999999999999999999998887777789999999999999999999999999999999986 5689999988 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...|..+. .+++++|++++.|..++++|+++.+.++.+.+|+.. ++++.|+| ...+|.+|+.++.|.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccceeeccCCCceE
Confidence 99999888 889999999999999999999999999999999995 99999999 567889999988764
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=143.42 Aligned_cols=145 Identities=14% Similarity=0.238 Sum_probs=133.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---------------CCEEEeecCCCeEEEEEc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------GRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~i~~~ 66 (150)
+.+.||.++++++.|.++++|-+.++++...+..|+.++.+++|.|. ++++.+++.|++|++||+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 45678999999999999999999999888888899999999999854 258999999999999999
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
. .+.++.++.+ |.++|..+. +|.|++|+++..|+++++||+++++++..+.+|+.+ +++++|+.+..+++||+.+.
T Consensus 322 ~-tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-vt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 322 S-TGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-VTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred c-CCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-eEEEecCCCCceEEeccccc
Confidence 5 5699999999 999999988 899999999999999999999999999999999997 99999999999999999988
Q ss_pred cccC
Q 031924 146 NVNP 149 (150)
Q Consensus 146 ~v~~ 149 (150)
.+++
T Consensus 399 t~Kv 402 (406)
T KOG0295|consen 399 TVKV 402 (406)
T ss_pred eeee
Confidence 7765
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=8.7e-26 Score=145.11 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=130.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+++|+-..++++++.|+.|+.||++..+.++...+|-+.|.|++..|.-..|++|+.|.++++||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 46788889999999999999999999999999999999999999999999999999999999999985 477788899 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+|..+. .+.+..+++|+.|++|++||++.++....+..|.. .+.+++.+|....+|+++.+.
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPDN 341 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCcc
Confidence 99999877 77778899999999999999999999999988877 699999999999999988764
No 24
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=148.01 Aligned_cols=146 Identities=18% Similarity=0.294 Sum_probs=132.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeee--------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
.|+||++++++++.||-|.+|+..+|+..+.+ .-++++|.|+.|+.|...+++|+.||.|++|.++ .+.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~-tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE-TGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe-cchHH
Confidence 58999999999999999999999998754332 3356799999999999999999999999999996 57999
Q ss_pred cccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+|..+|...|+|+. +.++..+++++.|.++++--++++++++.+.+|..+ |+.+.|.+||..+.+++.++.|.+
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy-vn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY-VNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc-ccceEEcCCCCeEEEecCCccEEE
Confidence 999744999999998 889999999999999999999999999999999997 999999999999999999998764
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=133.67 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=125.7
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe---eeeee-ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT---VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~ 74 (150)
++|+|- |..|++++.|+.|++|+...+. +...+ .+|...|++++|+|.|++|++++.|.++.||.-.... +++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 8899999999999999998532 23222 4788899999999999999999999999999754222 6778
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC---eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+.| |++.|+++. +++|++|++++.|..|.+|.+... ++...++.|.. .|..+.|+|...+|+++|.+..|+.
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKV 176 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEE
Confidence 8889 999999998 899999999999999999988643 47778889988 5999999999999999999887753
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=133.48 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=120.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
...|+++.|++++ ..+|++||+++++ ++..+++|...|+.+.|..+|+++++|+.||+++|||++.. .+ ++.-.
T Consensus 47 eiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~-qR~~~- 122 (311)
T KOG0315|consen 47 EITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SC-QRNYQ- 122 (311)
T ss_pred EEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-cc-chhcc-
Confidence 4678888888884 4599999999876 57888999999999999999999999999999999999852 33 33334
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..+|+++. +|+...|++|..+|.|++||+....+...+....+.+|+++...|||..++.+...|+.
T Consensus 123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 679999988 88999999999999999999988776666555555579999999999999998877765
No 27
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.7e-25 Score=153.89 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=119.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~--------------------------------~--------------------- 27 (150)
|.|++||++||+|++|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998654 0
Q ss_pred -------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ec-CCCEEEEe
Q 031924 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRVITG 98 (150)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~ 98 (150)
+++..+.+|.+.|.++.|+.+ ++|++++.|.++++|++. ...++..|. |.+-|+|+. +| |.+++++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 112356788899999999975 579999999999999996 458888885 899999998 55 88999999
Q ss_pred cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 99 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-||.+|+|++...+...-...+ +. |++++|.|||++.+.|+..|.+.
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~l-ITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-DL-ITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-hh-heeEEeccCCceEEEEEeccEEE
Confidence 99999999999887766554333 54 99999999999999999998764
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.1e-25 Score=153.94 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=137.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|....++++--+|.|++||.+-+.++.++..|+++|..++|+|.+..|++|+.|-+|++|+.. ..+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhhhcc-c
Confidence 5799999999999999999999999999999999999999999999999999999999999999985 4589999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+-|..+. ++.-.++++++.|.+|++|+..+++++..+.+|.-+ |.|..|+|....++|+|++..|.+
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY-VMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY-VMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE-EEeeccCCccceEEEecccceEEE
Confidence 99999888 777889999999999999999999999999999987 999999999999999999988764
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=146.86 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=130.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++.+|...++++++.|-+|++||.+.+ .+.+.+++|+..|.+++|+| |.+.|++++.|++|++|.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999875 46788999999999999999 578899999999999999964 367788889
Q ss_pred ccccceeEeeec---CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALLKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|+..|.|+... +..++++|+.|..+++||.++..+++++.+|... |..+.|+|.-..++|||-++.|.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-vs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-VSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-ceEEEecCCCcEEEEecCCccEE
Confidence 99999999833 3459999999999999999999999999999884 99999999999999999999874
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=4.9e-24 Score=140.82 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=131.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC---------CEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
|.|+|.+.+|++++.|++++||..........+..|...+..+.|+|.| ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4789999999999999999999998888888999999999999999864 468999999999999985 568
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
++..|.. |..+|.++. +|+++++++|+.||.|.+|+.++++..+.+... + .|..++|+.+|.++..+..++.+++|
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8888988 999999998 999999999999999999999999999998654 4 39999999999999998888877653
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=128.33 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=121.4
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSP 81 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~ 81 (150)
.+.|+..++++++|..+.+||+++|+..+++.+|.++|+.++|+.+...+++|+.|.++++||-+... ++++.+.. ..
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~ 145 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AK 145 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hc
Confidence 35577899999999999999999999999999999999999999999999999999999999987543 56666665 55
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.|.++. ..+..|++|+.||++|.||++.++...-+..| ||+++.|++|++....++++..+.-
T Consensus 146 D~V~Si~-v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 146 DGVSSID-VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred CceeEEE-ecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeee
Confidence 6666654 34678999999999999999998876555444 8999999999999999999887754
No 32
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-24 Score=148.85 Aligned_cols=144 Identities=15% Similarity=0.252 Sum_probs=122.8
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|++ ...+|++|+.||+|++||++..+......+..+.+++++|+|. +..|+++...|.+++||++...++..++..
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 35666 4568889999999999999998877777788889999999995 788999999999999999988889999988
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEeccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSL 145 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~ 145 (150)
|.+++.|+. +|++.+|++|+.|+.|++||+.+.+.......+...|+.+++|-|... .||++++-+
T Consensus 219 -H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 219 -HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred -ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc
Confidence 999999998 889999999999999999999866544444445556899999999765 578877644
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.9e-24 Score=136.96 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=134.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
-|+|+...+++++.|.+|++||..+++....+++|.+.+.+++|+..|+++++++.|-.+++||+...-++++...+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 47889899999999999999999999999999999999999999999999999999999999999765577778888 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..|.+++ -|.|.++++++.|.+|+.|+..++.++.++.+|.+. +.-++.+.||.++|+|+.+..|.
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew-vr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW-VRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh-EEEEEecCCeeEEEecCCCceEE
Confidence 9999888 888999999999999999999999999999999995 99999999999999999987764
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=132.01 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=125.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|.+|++.|++++.|++++.||+++|+.+++.+.|...++.+.-+.-|..+ .+++.|+++++||++. +..++++..
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~~- 173 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFEN- 173 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcccc-
Confidence 4688999999999999999999999999999999999999999855556555 5788999999999974 466666654
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...++++. .-.+..+++|+-|+.|++||++.+..+..+.+|.+ +|+.+..+|+|.++.+-+++..+.
T Consensus 174 -kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 174 -KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEE
Confidence 55677777 55778999999999999999999999999999999 799999999999999999887664
No 35
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=137.15 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=119.6
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|+|+ +..+++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|.. ..+++|++||+|++||.+.....+..+ .
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-n- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-N- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-c-
Confidence 47775 5567778889999999999987777889999999999999964 478999999999999998655455555 3
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
|..+|..+. -|.|..+++++. ..|++||+.+ ++.+..+..|.. .|+|+++..++..|.+|++++.|+.+
T Consensus 195 hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEE
Confidence 788999888 667788888764 5899999985 455566655877 59999999999999999999998763
No 36
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.2e-23 Score=135.02 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=126.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc--CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
..+|.+.||++++.|+++.+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +.....|++
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 3578999999999999999999999987765543 234689999999999999999999999999964 468889999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|..+|+.+. +.+|.++++++.|+.|++||++.-+..+++...+.+++.++.|++.|++|+.++.+..|
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999998 78999999999999999999998888888876665679999999999999999877665
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4e-24 Score=139.64 Aligned_cols=146 Identities=13% Similarity=0.205 Sum_probs=118.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
+.||||.+++++|+.+..+.+||+.+|....... ++...+.+++|.|||..+++|+.|+++..||++..
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 5799999999999999999999999997765443 34568999999999999999999999999997532
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 031924 70 ------------------------------------------------------------------------KDCSDRFV 77 (150)
Q Consensus 70 ------------------------------------------------------------------------~~~~~~~~ 77 (150)
.+.++++.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 12223333
Q ss_pred cccccc---eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
| |... |.++. ..+..++++|++|+.|++|+..+++++..+.+|.. .|++++|+| +...+|++|.++.|.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEE
Confidence 4 4332 33333 44567999999999999999999999999999998 599999999 556899999999874
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=3.8e-23 Score=130.08 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=123.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+|++..+++++.|..|.+|+.... +....+++|.+.|..+.|.+|++.+++++.|.+++.||.+ .++...++++
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeeehhcc-
Confidence 469999999999999999999996543 3456778999999999999999999999999999999986 6788999999
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|..-+.++. .. ...++.+++.|+++++||++++..++++... +.++++.|..++..+.+|+.++.|.
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCcee
Confidence 988888877 22 3457888999999999999999888887432 3599999999999999999887664
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=1.7e-22 Score=130.55 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=126.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|+++++++++.++.+++||++.++....+..+...+.++.|+|+++.+++++.++.+++||++. ++....+.. |
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~-~ 218 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRG-H 218 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cceecchhh-c
Confidence 46788888888888899999999998888888888888999999999999999999999999999863 466666766 7
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .+++.++++++.|+.+++|++.+++....+..|.. ++.+++|+|++.++++++.++.+.
T Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEE
Confidence 77888887 77788888888899999999998888888888877 699999999999999999988765
No 40
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.8e-22 Score=140.81 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=112.8
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFK 70 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~ 70 (150)
++|+|+ +++|++++.|++|++||+.++. .+..+.+|...|.+++|+|++..+ ++++.|++|++||++..
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 478996 7899999999999999997642 234567899999999999998764 68899999999999643
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeE-----EEEcCCccEEEecccc
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LGIASVLCFINSGFLS 144 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~s~~~~ 144 (150)
+....+. +...+.++. +++|.+|++++.|+.|++||+++++.+..+..|.+ .+.. ..|++++.++++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 456788887 88999999999999999999999998888888876 3332 2356898998887765
Q ss_pred c
Q 031924 145 L 145 (150)
Q Consensus 145 ~ 145 (150)
.
T Consensus 236 ~ 236 (568)
T PTZ00420 236 K 236 (568)
T ss_pred C
Confidence 3
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=1.9e-22 Score=147.33 Aligned_cols=145 Identities=16% Similarity=0.241 Sum_probs=122.2
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+| ++.+|++++.|++|++||+++++.+..+..+ ..+.++.|++ ++..|++|+.||.|++||++........+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998877776644 6789999964 6999999999999999999754334566778
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccC------CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|.++...++..+++++.|+.|++||+.. .+.+..+..|.. .+..++|+|++.+|++|+.++.|.
T Consensus 660 -h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 660 -HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred -CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEE
Confidence 98899988866888999999999999999974 246677878877 599999999999999999888764
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.9e-23 Score=127.62 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=122.3
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|++ +.+.+++++-|++|++|+...++.+.++.+|...|...+|+|. .+.+++++.|+++++||++..++... +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 4555 4567778899999999999999999999999999999999996 78899999999999999987766554 666
Q ss_pred cccceeEee--ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 80 SPNSVDALL--KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
|...+.++. ..+.+.+++|+.|+.|+.||++.-+ ++..+.+|.- .|+.++|||. ..+||+++.++.++
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhccccceEE
Confidence 887888876 4588899999999999999998754 6778878866 6999999995 46899999887664
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=135.93 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=125.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec---cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.|+|||+++++.+.||++.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.. .++++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4799999999999999999999999999888877 8999999999999999999999999999999964 47777765
Q ss_pred ccc---ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 78 GLS---PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 78 ~~~---~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
... ...+-|++. +..|++-+.+|.|.+++.....+++.+.+|.. +|+++..+||+++|.+|+.+|-|+.
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEE
Confidence 301 223334433 67889999999999999998889999999988 6999999999999999999998863
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=5.5e-22 Score=128.20 Aligned_cols=145 Identities=18% Similarity=0.284 Sum_probs=125.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+++++++++.++.+++|++.+++.......|...+..+.|+|+++.+++++.+|.+++|++.. ++....+.. |
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887777888888999999999999999999999999999863 356666777 7
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .++++++++++.++.+++||+.+++....+..|.. ++.+++|+|++.++++++.++.|.
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEE
Confidence 77888887 66778888888899999999998888888877877 699999999999999988666553
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=125.95 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=120.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
++|+| ...++++++.|.+|++||.+++++........+. .-+.|+|+|+++++++.|..|...|.++.
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 35666 5679999999999999999999998777654444 45789999999999999999998887643
Q ss_pred ------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 70 ------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 70 ------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
-+.++.++. |+....|+. .|+|+++++|+.|..+.+||+..--+++.+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 133445566 887777777 899999999999999999999888888889
Q ss_pred cCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 119 AEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..+.- ||+.+.|+.||++||+||-+..|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceE
Confidence 88755 99999999999999999987654
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=5.8e-23 Score=142.37 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=134.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.+|||+++|+++--|+++++|-+.+-+....+.+|.-+|.|+.++||++.+++|+.|.+|++|-+. .|.+-+.+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999999888999999999999999999999999999999999984 7899999988 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.|.++. -|+...+.+++.|+.|+.||...-+.++.+.+|.. .|.+++.+|+|.+++++|.+.+|.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeE
Confidence 99999887 77888999999999999999998899999999988 499999999999999999987764
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=4.1e-24 Score=141.39 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=127.6
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|.| .+.+|++++.|+.|+||++.. +++++.+.+|..+|.+++|+++|..|.+++.|+++++||.+ .|+++.+|..
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~~~~~f~~- 298 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQVLSRFHL- 298 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-cceEEEEEec-
Confidence 4667 788999999999999999987 77899999999999999999999999999999999999986 6788888864
Q ss_pred cccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...++|+. .|++ +.+++|+.|+.|+.||+++++.++.+..|-+ +|..+.|-++|+.+++.+.+.++.
T Consensus 299 -~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 299 -DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred -CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEE
Confidence 45566776 6766 8999999999999999999999999988888 699999999999999998877653
No 48
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=5.7e-22 Score=137.14 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeee-------------eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+...
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 456566666666666666765443211 23568899999999999 7899999999999999998643
Q ss_pred c------ccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 70 K------DCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 70 ~------~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+ ..+..+.+ |...|.++. +|.+ ++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|+++
T Consensus 109 ~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatg 186 (493)
T PTZ00421 109 GLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTT 186 (493)
T ss_pred ccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEe
Confidence 2 23456778 999999888 6654 6999999999999999999988888888888 69999999999999999
Q ss_pred ccccccc
Q 031924 142 FLSLNVN 148 (150)
Q Consensus 142 ~~~~~v~ 148 (150)
+.++.|.
T Consensus 187 s~Dg~Ir 193 (493)
T PTZ00421 187 SKDKKLN 193 (493)
T ss_pred cCCCEEE
Confidence 9988775
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=129.85 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=124.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|.|+|-...|+.|+.||.+.+|.+..+...+.+.+|..++++-.|.|+|++++++..||+|++|+..+.
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 578999999999999999999999998778888999999999999999999999999999999998542
Q ss_pred --------------------------------------------------------------------------------
Q 031924 70 -------------------------------------------------------------------------------- 69 (150)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (150)
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence
Q ss_pred ---cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 70 ---KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 70 ---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
....+..-. |+..|..+...+..+|++++.+|.|+.||.++++++..+.+|.. +|.+++++|++++++|+|.++.
T Consensus 314 D~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 314 DLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCe
Confidence 001111113 66677777644477999999999999999999999999999988 7999999999999999998765
Q ss_pred cc
Q 031924 147 VN 148 (150)
Q Consensus 147 v~ 148 (150)
..
T Consensus 392 a~ 393 (399)
T KOG0296|consen 392 AL 393 (399)
T ss_pred EE
Confidence 43
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=125.25 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=120.1
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+++ .+.++++++||.+++||+.. .+++..++.|..+|.++.|++- ++.+++++.|++|++|+.. .++.+++|.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 478875 56888899999999999654 3478888999999999999984 6667888999999999974 558889999
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
+ |...|.... +| .++++++++.|+.+++||++.......+..|.. .|.++.|+. +.+.++||+.+..|.
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcEEEecCCCceEE
Confidence 9 999998776 44 788999999999999999975333334778876 499999997 778899999887664
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=6.3e-22 Score=127.37 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=126.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.+|+.+++++|++|..-.+|++.++.....+.+|.+.|+++.|+.+|.+|++|+.+|.|++|+..+ +.....+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec-c
Confidence 35689899999999999999999999999999999999999999999999999999999999999864 344444433 3
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.-+. +|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..++.|.
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEE
Confidence 44556665 88999999999999999999988788889989877 799999999999999999988774
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.8e-22 Score=137.22 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=126.9
Q ss_pred CeeecCcceEEEEcC-CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+..|..|+.++. =|.+-+|+.++...+.+.++|...+++++++|||+++++|+.||+|++||.. .+-+..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 357778999998864 5899999999988888889999999999999999999999999999999985 5689999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
|...++.+. ...++.+++.+-||+|+.||+...+..+++.........+++.+|.|.+++.|+.+.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999998 789999999999999999999999999988765443477889999999999988753
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.6e-21 Score=142.57 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=118.6
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+|+| ++.+|++++.|++|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++. +.....+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 478999999999999999999988888999999999999997 789999999999999999963 455555554
Q ss_pred cccceeEee--ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL--KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ ..+.++. ++++..+++|+.||.|++||++..+ .+..+..|.. +|..+.|. ++.++++++.++.|+
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEE
Confidence 3 4566665 4578999999999999999998755 4666778877 69999997 688899999888764
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=7.7e-23 Score=131.55 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=105.7
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-----------------------------------
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----------------------------------- 47 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------- 47 (150)
...+.+.|++|+.|.+|++||+++++++..+..|.+.|..+.|+.
T Consensus 243 Lqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 243 LQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred eeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 345677888999999999999999887766666666666666541
Q ss_pred ------CCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 48 ------NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 48 ------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
+.+++++++.|.+|++|++. ....+.++.+ |...|.|+ ...++++++|++|.+|++||+..|.+++.+.+|
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~s-t~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTS-TCEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eeeeccccceEEEecCCceEEEEecc-ceeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 22355555555555555542 3456666777 77776665 456789999999999999999999999999999
Q ss_pred CCcceeEEEEcCCccEEEeccccccccC
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++. |.++.|+ .+.+++|+.+|.|..
T Consensus 400 EeL-vRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 400 EEL-VRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred HHh-hhheeec--CceeeeccccceEEE
Confidence 995 9999984 567999999998753
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=7.8e-23 Score=136.82 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=109.4
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeee-ec-----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCS 73 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~ 73 (150)
+|+|+ .+.+++++.||++++||+...+.... ++ +..-+++.++|+++|+.|++|+.||.|.+|+.+... +..
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~ 354 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV 354 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence 68996 45788999999999999987553222 21 223378999999999999999999999999975332 222
Q ss_pred ccccccccc--ceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCC-CcceeEEEEcCCccEEEeccccc
Q 031924 74 DRFVGLSPN--SVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 74 ~~~~~~~~~--~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+..+|.. .|+|+. +++|++|++-+.|+++++||++. ++++.....-. .++-+.++|||+.++|++|...-
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 223222655 789998 89999999999999999999986 44555554322 25677899999999999998653
No 56
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=2.6e-22 Score=143.09 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=121.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------------------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
+.|+|||++||+|+.|..|.||+... .+....+.+|...|..++|+|++.+|++++.|++|.
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 46999999999999999999999872 124567789999999999999999999999999999
Q ss_pred EEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-----cceeEEEEcCCcc
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLGIASVLC 136 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 136 (150)
+|+..+. +.+..+.+ |...|..+. .|-|++|++-+.|++|++|.+.+-...+.+.++.+ .-..++.|||||+
T Consensus 155 iwn~~tF-~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRG-HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred EEccccc-eeeeeeec-ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 9999876 88889999 999999888 99999999999999999999876656665544322 1288999999999
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
+|++.-.
T Consensus 233 ~las~nA 239 (942)
T KOG0973|consen 233 HLASPNA 239 (942)
T ss_pred eecchhh
Confidence 9998654
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-21 Score=134.05 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=129.7
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
|-+-.+.+++|+.|..|++|+..+++.++.++.|.+.+++++.+|...++++++.|.+|++||++..-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4455678999999999999999999999999999999999999999999999999999999999755588899999 999
Q ss_pred ceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 83 SVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
-|-.++ +| +.+.+++++-|++|++|.+.+..+..++.+|+. +|+++.|-+ |..+|+||+.+..+.
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEE
Confidence 888887 44 778999999999999999988888899999988 799999987 446999999887664
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.6e-22 Score=120.99 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=127.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+-+|++.++++.|.+|++|+...+.++++..+|..+|..++.+.|+..|++++.|..+.+||+. .++...++.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-cCeeeeeccc-cc
Confidence 578899999999999999999999999999999999999999999999999999999999999995 6799999999 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
..|+.+. +.+...+++|+-|..+++||-++. ++++.+....+ .|.++..+ +..|++|+.+|++..
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec--ccEEEeeccCCcEEE
Confidence 9999998 667789999999999999998764 57888876666 58888765 566899999988763
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.9e-22 Score=133.64 Aligned_cols=146 Identities=13% Similarity=0.221 Sum_probs=123.0
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
+.|+|++ +.+++|+.|+.|+.||+++++.++....|-+.+..+.|-++|+++++.+.|+++++|+.+..
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 3578887 78889999999999999999999888899999999999999999999999999999997643
Q ss_pred -----------------------------------cccccccccccccc---eeEeeecCCCEEEEecCCCcEEEEeccC
Q 031924 70 -----------------------------------KDCSDRFVGLSPNS---VDALLKLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 70 -----------------------------------~~~~~~~~~~~~~~---v~~~~~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
....++|.+ |..+ +.+-++|+|++|++|..||.+.+||.++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 011123444 4322 3333499999999999999999999999
Q ss_pred CeeeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 112 NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
.+.+..+++|.+ ++..+.|+|. ...+|+|+.+|.|.
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeE
Confidence 999999999977 7999999995 46899999998875
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=2.1e-21 Score=120.00 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=118.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|-...+.|+++..|++||+||.++++.++.++. ..+|+++.++++|+++.++ +.+.|.+||.... ..++.++. +
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeeccC--c
Confidence 3556677888889999999999999988888764 6789999999999977665 6678999998655 44444443 4
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..|.+.. .|+...+++|+.|..++.||..++..+..+ ++|.+ ||.++.|+|||...|+||.+|.|.
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEE
Confidence 5566666 888899999999999999999999988886 78888 899999999999999999999874
No 61
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-22 Score=140.88 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=121.7
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCC---CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.|+. +.++|++++..|.|.+||+.. .+.+..+..|+..++++.|++. -..|++|++||+|++||++.. +...++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccc
Confidence 4553 578999999999999999987 4556677889999999999986 567899999999999999854 566666
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ ....|..+. +| .++.++++...|.+++||++. .++...+.+|.+ +|.++.|+|++.+|||||.+..|+
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEE
Confidence 66 677787766 43 678999999999999999974 567788889999 799999999999999999987764
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.7e-22 Score=131.39 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=116.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|-.||+++++|...|.|++||+.+...+..+..|+.++....|+|. ++.|++|+.|+.+++||+. .......+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEEEEEecC-C
Confidence 57789999999999999999997665567888999999999999996 5667889999999999986 3344446778 9
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
++-|.|.. .| ++..+++|+.||.|++||++.. ..+..+ .|.. ||..+.+-|.|..+|+++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~-pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGC-PVESVLALPSGSLIASAGGN 217 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCC-ceeeEEEcCCCCEEEEcCCC
Confidence 99999987 44 5668999999999999999876 445555 5655 89999999999999988754
No 63
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=5.6e-22 Score=137.05 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=123.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCee-----e----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV-----Q----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
-.++++++.|.++++|++...+. . .....|...|++++++|+...+++|++|++.++|+++ .......+.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLs 502 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLS 502 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEee
Confidence 35889999999999999987321 1 1234688899999999999999999999999999997 457888999
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...+-++. ++..+.+++++.|++|++|.+.+..+++++.+|.. .|..+.|-.+|+.|+||+.+|.+.
T Consensus 503 G-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 503 G-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred C-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEE
Confidence 9 999999998 88889999999999999999999999999999998 599999999999999999998764
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=9.5e-22 Score=127.17 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=121.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--ccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~ 79 (150)
.|++ ...+++++.|.+|+.||+++++....+.+ ...++++.++|...+|++|+.|..+++||.+..+ -..+++.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 3555 66888999999999999999988776654 5678999999999999999999999999997654 34567889
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.+.|.++. +| +...|++++.|+++++||.++.+ ++..+..|.+ .|.++.|+. +.++++||.+.++.
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEeccC-CceEEeccCcceEE
Confidence 999999887 55 56789999999999999999877 8899999988 599999965 66899999987764
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=3.7e-22 Score=126.74 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=121.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--F 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~ 76 (150)
+.|+|....|++++.|++|++||..+....+ +......+|.++.|+|.|.++++|....++++||+.+.+.-... -
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 4799999999999999999999997643221 22234568999999999999999999999999999755321111 1
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. |...|+++. ++.+++.++++.||.|++||--+++++.++. +|.+..|.+..|..+|+|+.+.+.+..|.
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 25 788899888 8899999999999999999999999998885 67666799999999999999999876553
No 66
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=8.4e-21 Score=132.53 Aligned_cols=133 Identities=8% Similarity=0.036 Sum_probs=108.4
Q ss_pred EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc-------cccccccccccce
Q 031924 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (150)
Q Consensus 13 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~~~v 84 (150)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +..|++|+.|++|++||+...+. ....+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 345778999998777777888999999999999997 78999999999999999864322 2234567 88899
Q ss_pred eEee-ecCCCE-EEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 85 DALL-KLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 85 ~~~~-~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.++. +|++.. +++++.|+.|++||+++++....+. |.. .|.+++|+|+|.+|++++.++.|.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~-~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK-KLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC-cEEEEEECCCCCEEEEEecCCEEE
Confidence 9888 777765 5788999999999999888766664 445 599999999999999988776553
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.1e-22 Score=130.04 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=123.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|+.|...+++|+.||.|++|.+++|.+++++. .|...|+|+.|+.|+..+.+++.|.++++.-+. .+++++.|.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4688999999999999999999999999998887 788999999999999999999999999999985 6799999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcCCc-cEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIASVL-CFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~s~~~~~ 145 (150)
|..-|+... .++|..+++++.||+|++|+.++.+++.+++.. .+.+|.++..-|.. ..++.|..+.
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 999888766 889999999999999999999999998888543 34578888877743 4555554443
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-21 Score=119.93 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=115.6
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeee---------------------------------------------------
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT--------------------------------------------------- 31 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------------------------------- 31 (150)
.+.+.+.+++|+.|.++++||+++|+.+.
T Consensus 60 id~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 60 IDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred ecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 45567899999999999999998876432
Q ss_pred --eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 32 --RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 32 --~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
.+..+++.++.+.|.|-+++|++|..||.|..||.++..+.+..... |...|+.+. +++..++++++.|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeee
Confidence 12233456778889999999999999999999999755466666666 888999998 89999999999999999999
Q ss_pred ccCCeeeee-------------------------------------------------------ccCCCCcceeEEEEcC
Q 031924 109 ILPNRIIQP-------------------------------------------------------IAEHSEYPIESLGIAS 133 (150)
Q Consensus 109 ~~~~~~~~~-------------------------------------------------------~~~~~~~~i~~~~~~~ 133 (150)
.++-+++++ ++.|-+ ||++++|+|
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHP 297 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECC
Confidence 765433322 235556 799999999
Q ss_pred CccEEEeccccccccC
Q 031924 134 VLCFINSGFLSLNVNP 149 (150)
Q Consensus 134 ~~~~l~s~~~~~~v~~ 149 (150)
+|+..++|+-++.|+.
T Consensus 298 dGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRL 313 (327)
T ss_pred CCcccccCCCCceEEE
Confidence 9999999999988763
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.9e-21 Score=126.89 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=120.1
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe-------eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccc-cc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT-------VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGY-FK 70 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~-~~ 70 (150)
+.|++. .-.+++++.|++|.+||+.... +...+.+|++.|..++|++- ...|++++.|+.+.|||.+. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 467774 4478899999999999997642 23567799999999999995 56678899999999999985 22
Q ss_pred ccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCC-ccEEEecccccc
Q 031924 71 DCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLN 146 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~ 146 (150)
+......+ |...+.|+. +| ++..|++|+.|++|.+||+++- +.+..+..|.+ .|.++.|+|. ...||+++.++.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 44455567 999999998 44 7889999999999999999874 47888999999 5999999995 468999998887
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
+++
T Consensus 341 l~v 343 (422)
T KOG0264|consen 341 LNV 343 (422)
T ss_pred EEE
Confidence 653
No 70
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-21 Score=136.56 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=127.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|...++++|+.|-+|++|+..+.+++.++.+|.+.|..+.|++.-.++++++.|.+|+||++. ..+++..+.| |
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltG-H 134 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTG-H 134 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEec-C
Confidence 5799999999999999999999999999999999999999999999999999999999999999995 5689999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccC--------C-------------------e--eeeeccCCCCcceeEEE
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILP--------N-------------------R--IIQPIAEHSEYPIESLG 130 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~--------~-------------------~--~~~~~~~~~~~~i~~~~ 130 (150)
..-|-|.. .|...++++++-|-+||+||+.. + . ..+.+.+|.. +|+-++
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaA 213 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAA 213 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEE
Confidence 88888777 78899999999999999999842 1 0 1123456655 699999
Q ss_pred EcCCccEEEecccccccc
Q 031924 131 IASVLCFINSGFLSLNVN 148 (150)
Q Consensus 131 ~~~~~~~l~s~~~~~~v~ 148 (150)
|+|.-.+++||+.+-.|.
T Consensus 214 fhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred ecCCcceEEecCCcceee
Confidence 999999999999876653
No 71
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=6.8e-23 Score=141.42 Aligned_cols=145 Identities=20% Similarity=0.295 Sum_probs=133.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+++..+|+.|+.+|+|++||++..+.++.+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+. .-+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46788889999999999999999999999999999999999999999999999999999999999873 467888888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .|+|+++++++.|..+++||...++.+..|..|++ .+..+.|+|..-++++|+.+..|.
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceee
Confidence 88888887 99999999999999999999999999999999999 699999999999999999887654
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-20 Score=116.94 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|.|+.+|.+|++++.|.+..+|-...|+.+....+|.+.|.|+..+-+.+.+++|+.|.++++||+...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~ 95 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP 95 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe
Confidence 467889999999999999999999899999999999999999999999999999999999999998643
Q ss_pred -----------------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEE
Q 031924 70 -----------------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLV 107 (150)
Q Consensus 70 -----------------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~ 107 (150)
..+...++. +...++... .+-++.|++|..||.|..|
T Consensus 96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~~ 174 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISIY 174 (327)
T ss_pred eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEEE
Confidence 011222233 344455443 7788899999999999999
Q ss_pred eccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 108 GILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 108 d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
|+++++ .+.....|.. .|+.++++||..++++++-+..
T Consensus 175 da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 175 DARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred EcccCceeeechhhhcc-ccccccccCCcceEEecccCcc
Confidence 999975 5666678877 6999999999999999997654
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=9.3e-21 Score=135.34 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=122.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
++|+|++.++++++.|++|.+|+..+.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 579999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred --------------------------------------c--ccccccccccccceeEee-ec-----CCC----------
Q 031924 70 --------------------------------------K--DCSDRFVGLSPNSVDALL-KL-----DED---------- 93 (150)
Q Consensus 70 --------------------------------------~--~~~~~~~~~~~~~v~~~~-~~-----~~~---------- 93 (150)
+ +....+.| |..++.++. +| +..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 0 11223557 888888765 33 111
Q ss_pred --EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 94 --~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+++|+.|+.|.+|.....+++..+..-...+|..++|+|||..|..||.+|+|-
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 6788999999999998777776665443444799999999999999999999885
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=119.13 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=95.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCC-Ceee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++||| ...++++++-|++||+|+++. +... +....+.+++.+++|+.+|..+++|+.|+.+++||+.. + +...+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-C-Ceeeee
Confidence 57999 556676889999999999987 3333 44457889999999999999999999999999999963 3 455566
Q ss_pred cccccceeEeee-c--CCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 78 GLSPNSVDALLK-L--DEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 78 ~~~~~~v~~~~~-~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
. |..+|.++.. + .-..|++|+.|.++++||++...++.++..
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 6 9999998762 2 335899999999999999998877777643
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.2e-20 Score=115.95 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=124.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+.++..++...+.|+|.|.....-+++..++.|.....|+.|+|+|++|++|+.|..+.+||+.+. -+.+.+.- +
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isR-l 230 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISR-L 230 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecc-c
Confidence 367777788888888999999999998899999999999999999999999999999999999999633 66677777 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+|..+. +.+|++|+++++|..|-+=+.++|..+..+ .+++ +-..++|+|...+||-++.+-
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~-~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEG-PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccC-CceeEEecCCCceeeEEecCC
Confidence 89999998 889999999999999999999999988888 4556 688999999999999877643
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.8e-21 Score=128.97 Aligned_cols=141 Identities=15% Similarity=0.209 Sum_probs=125.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+++|.+|++|..+|.|.|||....+.+..+.. |...|-+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46899999999999999999999999888888887 89999999998 677899999999999999866555555778
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~ 145 (150)
|...|..+. +++++++++|+.|+.+.+||....++...+..|.. .|..++|+| ...+||+|+.+.
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCc
Confidence 999998888 89999999999999999999988888888889988 599999999 678999988754
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.7e-21 Score=134.23 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=99.2
Q ss_pred eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------------------------------------
Q 031924 31 TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------------------------------------- 69 (150)
Q Consensus 31 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------------------------------------- 69 (150)
+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 88999999999999999999999999999987540
Q ss_pred -------------------cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEE
Q 031924 70 -------------------KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLG 130 (150)
Q Consensus 70 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 130 (150)
.+.+..|.| |...|..+.....++|++++.|.+||+|++...++++.| .|.++ |+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf-VTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDF-VTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhc-cchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCe-eEEEE
Confidence 223345567 777788887677789999999999999999999999999 88898 99999
Q ss_pred EcC-CccEEEecccccccc
Q 031924 131 IAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 131 ~~~-~~~~l~s~~~~~~v~ 148 (150)
|+| |.+|+++|++++.|.
T Consensus 417 FnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ecccCCCcEeecccccceE
Confidence 999 889999999999874
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=2.2e-20 Score=118.74 Aligned_cols=144 Identities=13% Similarity=0.200 Sum_probs=119.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC------------C------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEE
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 63 (150)
+|+|||.++++|+.|..|+|+|++. + ..++.+..|.++|+++.|+|....|++|+.|+++++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999872 1 145678889999999999999999999999999999
Q ss_pred EEccccc--ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec---cCCCCcceeEEEEcCCccE
Q 031924 64 YSWGYFK--DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 64 ~~~~~~~--~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 137 (150)
||+.... +..+.|. ...++.++. .|.|.+++.|.....+++||+.+.++.-.- ..|.+ .|+++.+++.|++
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 9985321 2222333 356788888 899999999999999999999988764432 35666 6999999999999
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
.++|+-+|.|.
T Consensus 276 YvTaSkDG~Ik 286 (430)
T KOG0640|consen 276 YVTASKDGAIK 286 (430)
T ss_pred EEEeccCCcEE
Confidence 99999999875
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.1e-20 Score=128.08 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=124.3
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCee--e--------eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTV--Q--------TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
-++..++++|+-|+.|.+||++++.. + ..+. ++..++.+++.++.|..+++|+..+-+++||.+.. +.
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~-~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC-KK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-cc
Confidence 45778899999999999999997621 1 2223 67789999999999999999999999999998744 55
Q ss_pred ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-++.+ |...|.++. +.+|..++++++||+|++||+.-.+++.++..|.+ .+.++..+|+-..+.+|+.+++|.
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEE
Confidence 556679 999999998 89999999999999999999999999999999988 699999999999999999999874
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=123.09 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
++.++|+++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+++++|++...
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 478999999999999999999999999989889999999999999888888999999999999987532
Q ss_pred -----------------------------cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-
Q 031924 70 -----------------------------KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA- 119 (150)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 119 (150)
....-.+.+ +...+.|++..+...+++|+.||.|.+|++...+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg-~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRG-GEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccceeeeeC-CCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec
Confidence 001112335 6667778888888999999999999999998888766543
Q ss_pred CCCC----------cceeEEEEcCCccEEEecccccccc
Q 031924 120 EHSE----------YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 120 ~~~~----------~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+|.- +-|++++..|...++|+|+.++.|.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceE
Confidence 2221 1388999999999999999988875
No 81
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=7.5e-21 Score=123.12 Aligned_cols=145 Identities=10% Similarity=0.090 Sum_probs=111.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCeee---eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|||- .-.+++|.--+.|++|...++.-. .-+.+|+..|..++|+|. ...|++++.||+|+|||++...+....
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 478883 335777877789999999887532 345579999999999996 567899999999999999855322222
Q ss_pred -cccccccceeEee-ecCCCEEEEecCCCcEEEEeccC---CeeeeeccCCCCcceeEEEEcCC-ccEEEeccccccc
Q 031924 76 -FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNV 147 (150)
Q Consensus 76 -~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v 147 (150)
.+. |..-|+.+. +.+..+|++|+.||++++||++. ++++..++.|.. ||+++.|+|. ...|+.++.+..|
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcE
Confidence 245 888899888 55556899999999999999975 567788888988 8999999984 3455555555443
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=2.8e-20 Score=122.38 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=116.8
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+| ...++++++.|+.+.|||.+ +.++....++|...++|++|+|- +..|++|+.|++|.+||+|...+...++
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 46777 45678888999999999999 55566778899999999999995 5667899999999999999888888999
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC--------------eeeeeccCCCCcceeEEEEcCCccE-EE
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN--------------RIIQPIAEHSEYPIESLGIASVLCF-IN 139 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~ 139 (150)
.+ |...|..+- +| ....|++++.|+.+.+||+..- +++....+|.. .|..+.|+|...+ ++
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 999999987 55 5678899999999999998531 13455667877 5999999997754 66
Q ss_pred eccccc
Q 031924 140 SGFLSL 145 (150)
Q Consensus 140 s~~~~~ 145 (150)
|.+-+.
T Consensus 391 SvaeDN 396 (422)
T KOG0264|consen 391 SVAEDN 396 (422)
T ss_pred EecCCc
Confidence 665553
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-19 Score=114.57 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=121.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|.|+++|..+++++.|.++++||...++..+.+..++..+..++|-.....++.++. |.+|+..++. ..+.++-|.|
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEEcCC
Confidence 578999999999999999999999999999999988888999999887777777765 8899999986 4588899999
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|...|..+. +|.++.+++++.|++|++||++..++...+... +-..++|+|+|-++|.+..+..|
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcEEEEecCCCeE
Confidence 999999998 888899999999999999999977776665332 23347999999999998876443
No 84
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=119.72 Aligned_cols=144 Identities=10% Similarity=0.199 Sum_probs=108.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--ccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~ 75 (150)
++|||. ...|++|+.|++|+|||++.+. .-...+.|.+.|+.+.|+.+..+|++|+.||+++|||++... +.+.+
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 578995 5688899999999999999873 222337899999999999998899999999999999998543 56778
Q ss_pred cccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe--------eee--------eccCCCC-cceeEEEEcCCc-
Q 031924 76 FVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR--------IIQ--------PIAEHSE-YPIESLGIASVL- 135 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~--------~~~--------~~~~~~~-~~i~~~~~~~~~- 135 (150)
|+- |..+|+++. +| +...|++++.|.+|.+||+.-.. ... .+-.|.+ .-+..+.|+++-
T Consensus 343 fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 343 FKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred EEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 888 999999998 44 56788899999999999984211 011 1112211 127778899854
Q ss_pred cEEEeccccc
Q 031924 136 CFINSGFLSL 145 (150)
Q Consensus 136 ~~l~s~~~~~ 145 (150)
-++++.+.+|
T Consensus 422 G~lvsTa~dG 431 (440)
T KOG0302|consen 422 GLLVSTAIDG 431 (440)
T ss_pred CeEEEecccc
Confidence 3566655554
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.4e-20 Score=117.19 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=114.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC--EEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
++.++++|+.|-+|+|||+++.+.+..+..|.+.++++.|.+.-. .|++|+.||.|.+|+...+ .+...+++ |...
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~~ 129 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKGQ 129 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-cccc
Confidence 688999999999999999999988888889999999999998754 8999999999999999766 88889999 9999
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|+.+. +|.+++-++.+.|+.++.||+-.++.-....-... .+.+.|+|.|.+++.++.
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEec
Confidence 99998 99999999999999999999988774444322212 445899999996665543
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=126.04 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=121.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+.++++|+.|.++++||..++++...+.+|.+.+.++... ...+++|+.|.+|++|++. .+..+..+.+ |..+|.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~-h~~~V~ 335 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNLLRG-HTGPVN 335 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEEecc-ccccEE
Confidence 47899999999999999999999999999999999998764 4567889999999999996 5688889988 999999
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++... +.++++|+.|+.|++||+.+++++..+.+|.. .|.++.+.+. ..+.+|+.+..|.
T Consensus 336 ~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~Ik 395 (537)
T KOG0274|consen 336 CVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIK 395 (537)
T ss_pred EEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceE
Confidence 98733 88999999999999999999999999999999 5999988776 8999999987664
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=109.59 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=109.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee-----eeeccCCCcEEEEEEE-----------------------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLM----------------------------- 46 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~----------------------------- 46 (150)
.+|+|.|++|++|+.|++|++...+...+. ..+.-|.+.|..++|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 379999999999999999998754332111 1222233333333332
Q ss_pred -----------------eCCCEEEeecCCCeEEEEEcccccccccccc----c--ccccceeEee-ecCCCEEEEecCCC
Q 031924 47 -----------------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV----G--LSPNSVDALL-KLDEDRVITGSENG 102 (150)
Q Consensus 47 -----------------~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----~--~~~~~v~~~~-~~~~~~l~~~~~dg 102 (150)
=+|-.+++|++|.+|++||++.. .++..+. + .....|.+++ .|.|+++++|..|.
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 24557899999999999999743 3443332 1 0125566776 89999999999999
Q ss_pred cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 103 LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+||++.++.++.+..|.. .|.++.|+|...|+.+|+.++.|.
T Consensus 254 sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEE
Confidence 999999999999999999988 599999999999999999998875
No 88
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=1.4e-20 Score=121.34 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=107.5
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc--
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-- 82 (150)
.|...+++|..|++|++||..+..+...+.+|.+.|.|+.|. .+.+++|+.|.++++||+. .++++.++.+ |.+
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~tlih-HceaV 280 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNTLIH-HCEAV 280 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhHHhh-hccee
Confidence 366789999999999999999988899999999999999885 5689999999999999996 3444444433 333
Q ss_pred -----------------------------------------ceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 83 -----------------------------------------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 83 -----------------------------------------~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
.|..+ ..+.+++++++.|.+|++|++.+++.++++.+|
T Consensus 281 Lhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-dfd~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 281 LHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-ccccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 33222 223458889999999999999999999999888
Q ss_pred CCcceeEEEEcCCccEEEecccccccc
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. +|-++.+ .++++++|+.+..|.
T Consensus 360 kR-GIAClQY--r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 360 KR-GIACLQY--RDRLVVSGSSDNTIR 383 (499)
T ss_pred cc-cceehhc--cCeEEEecCCCceEE
Confidence 77 5766654 688999999887764
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.3e-20 Score=124.05 Aligned_cols=144 Identities=9% Similarity=0.079 Sum_probs=122.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeec--CCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.|++|++++++|+.|+.+.|||....++...+..|...|.+++|+|- ...||+|+ .|+.|++||.. .+..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN-TGARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC-CCcEecccc
Confidence 579999999999999999999999887788889999999999999995 66777764 79999999986 456666654
Q ss_pred cccccceeEee-ecCCCEEEEe--cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITG--SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ...|..+. ++..+.|+++ ..++.|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.+-+++
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEE
Confidence 3 56788877 6766666554 3567999999999889999999988 699999999999999999988764
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=5.9e-21 Score=123.14 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=121.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+|- ...|+++..|+.|.+||+++..+++.+. .....+.++|+|.+-.|++++.|..++.||++.....+....+
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 357774 4567777799999999999998876654 2456689999998888999999999999999877788888888
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.+.+..+. +|.|+.+++|+.|.+|++|....+..-..+....-+.|.++.||.|.+|+++||.++||.
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 999999888 999999999999999999998776654433221223599999999999999999999986
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=119.09 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=123.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-cc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~ 80 (150)
.|+|+...+++++.|..|++|..........+..|+++|+.+..+|.|.||++++.|++.-+.|.+. +..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999988777777889999999999999999999999999999999864 444433321 02
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.-.+++.. +|||.++.+|..||.+++||+.++.....|..|.+ +|..++|+.+|-+||+++.++.|
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeE
Confidence 23356666 89999999999999999999999989999999998 79999999999999999988754
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.7e-20 Score=125.61 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=122.5
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEE-EeCCCEEEeecCCCeEEEEEcccccc-cc-------
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CS------- 73 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~-~~------- 73 (150)
.+++.+++++.|-+|++|+...+ -+...+..|.+.|.|+++ .++...+++|+.|+.|.+||+..... ..
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 46789999999999999999887 356778899999999999 77888999999999999999963211 11
Q ss_pred -cccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 74 -DRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 74 -~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.... + +..++++++ .+.+..+++|+..+.+++||.++++.+..+.+|.+. |..+..++||+.++++|.++.|+.
T Consensus 163 ~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN-Vr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 163 VNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN-VRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred cccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc-eEEEEEcCCCCeEeecCCCceEEe
Confidence 2222 6 778899988 778889999999999999999999988888899995 999999999999999999998864
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=118.94 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=117.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.||++|++||+++.|.+.-+|++... +..+++.+|..+|..+.|+||.+++++++.+..+.+||.. .+.....++
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC-cchhhhhcc
Confidence 468999999999999999999987654 3467888999999999999999999999999999999986 456666665
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
..+...+.+++ .|+|..+++|+.|+.+..||+. +..+..+.+-....|.+++..+||+++.+.+.+-.
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 31446666666 9999999999999999999994 55556665544445999999999999887665543
No 94
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.1e-19 Score=126.39 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=123.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-----C---eee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----N---TVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-----~---~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
|+.+||++.+++++.|++|++||..- + +.+ .+...-++.+.|+.+||||++|+++-.|.++++|-+++
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 45689999999999999999999642 1 111 11122357899999999999999999999999999864
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. +..-.+-| |.-+|.|+. +|+++++++|+.|..|++|-+.-|.+.+.+-+|.+ +|.++.|-|+...+.++|-++.|
T Consensus 540 l-KFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 540 L-KFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred e-eeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEcccceeEEEecCcceE
Confidence 4 44445568 999999999 99999999999999999999999999999999999 69999999999999999988876
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 617 K 617 (888)
T KOG0306|consen 617 K 617 (888)
T ss_pred E
Confidence 4
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=125.29 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=121.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 69 (150)
+.++-|++.+.|...|+|-+|++++|-....+ ..|.++|++++....++.+++++.+|.+.+||+...
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~ 534 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG 534 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence 45677899999999999999999998655555 478999999999988999999999999999998543
Q ss_pred -------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 70 -------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 70 -------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.+..+.|.+ |.+.++.+. +++|+++++++.|++|++||+.++.++--
T Consensus 535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 244566778 999999998 99999999999999999999999998877
Q ss_pred ccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 118 IAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+.- .. +..++.|+|+|.+||+...+.
T Consensus 614 ~~v-d~-~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 614 LLV-DS-PCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred Eec-CC-cceeeEECCCCCEEEEEEecC
Confidence 633 23 799999999999999987763
No 96
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.83 E-value=3.3e-19 Score=119.79 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=118.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++|++..++.|+.|+.|++|.+..... ......|.+++++++|+||+.+|+++...+.+.+||..........+.-
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 47899999999999999999999988653 3456688999999999999999999999999999998654344445556
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|...|.++. +|++.++++|+.|..|.+|++.. .+.+....+|.. .|+.+.|-.+..+ ++.+.+-+|
T Consensus 529 -HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~-gVn~v~wlde~tv-vSsG~Da~i 596 (603)
T KOG0318|consen 529 -HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG-GVNSVAWLDESTV-VSSGQDANI 596 (603)
T ss_pred -eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc-CceeEEEecCceE-EeccCccee
Confidence 999999998 99999999999999999999864 444555568888 6999999776654 555555544
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=113.42 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=111.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC--EEEeecCCCeEEEEEcccc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~~~~~~--------- 69 (150)
++|+.||..+++++.|+.+++||+.++ ....+..|.++|.++.|-+... .|++|+.|++|+.||.+..
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 479999999999999999999999999 4556778999999999998755 8999999999999998753
Q ss_pred -------------------------------------------------------------------------c--cccc
Q 031924 70 -------------------------------------------------------------------------K--DCSD 74 (150)
Q Consensus 70 -------------------------------------------------------------------------~--~~~~ 74 (150)
. +...
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 1 1112
Q ss_pred cccccccc---------ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 75 RFVGLSPN---------SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ~~~~~~~~---------~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+|+. |.. .|..+. +|....|++.++||++.+||-.....+...+.|.. ||++.+|+.+|.++|-+
T Consensus 237 tFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 237 TFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 2333 331 233455 66777999999999999999887777788777877 89999999999998854
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6e-19 Score=111.80 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=113.6
Q ss_pred eecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 3 FAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 3 ~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|-...+.++.++ .|.+|+..++.+.+.++.+.+|...|++++.+|-+..+++++.|++|++||++..
T Consensus 64 Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 64 FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 433344444444 4899999999999999999999999999999999999999999999999999743
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 031924 70 ---------------------------------------------------------------------------KDCSD 74 (150)
Q Consensus 70 ---------------------------------------------------------------------------~~~~~ 74 (150)
|...+
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 22333
Q ss_pred cccccccc----ceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 75 RFVGLSPN----SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 75 ~~~~~~~~----~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
++.+ ++. ++.+...|+++++++|+.||+|.+|++++++.+..+.+....++.++.|+|.-..+++++....
T Consensus 224 tfs~-~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~ 298 (311)
T KOG1446|consen 224 TFSG-YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLV 298 (311)
T ss_pred eEee-ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEE
Confidence 3333 222 2344457999999999999999999999999888887743337999999999999999886543
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=5.3e-20 Score=123.47 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=117.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCC--cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.+|+||++.|++|+.||.|.+|+..... ....-..|.. .++|+.|+++|++|++-+.|+++++||++...+.+..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 3799999999999999999999975432 1233356666 8999999999999999999999999999988777776
Q ss_pred cccccccc---eeEeeecCCCEEEEecC------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 76 FVGLSPNS---VDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 76 ~~~~~~~~---v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
..+ -+.. -.|+.+|+.++|++|.. .|.+.+||..+-..++.+..... .|..+.|+|.=+.|..|+.+|.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCc
Confidence 654 3222 23555999999999863 45799999988888888855544 6999999999888888888887
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
+..
T Consensus 481 ~~v 483 (641)
T KOG0772|consen 481 AHV 483 (641)
T ss_pred eEE
Confidence 754
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-19 Score=117.00 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=117.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC-------------------------CeeeeeeccCCCcEEEEEEEeCCCEEEeec
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (150)
...+++..+++++.|..|++|+.+. +.++..+.+|.++|.++.|++ ...+.+++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4567899999999999999999322 113457889999999999998 67789999
Q ss_pred CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEc
Q 031924 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~ 132 (150)
.|.+|+.||+. .+....++.+ +..+.++. .+..++|++|+.|..+++||++++. ..+.+..|... |.++.|+
T Consensus 279 wDHTIk~WDle-tg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw-Vssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLE-TGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-VSSVKWS 354 (423)
T ss_pred ccceEEEEEee-cccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh-hhheecC
Confidence 99999999996 4566666655 56788888 7888999999999999999998754 56778899886 9999999
Q ss_pred CCcc-EEEecccccccc
Q 031924 133 SVLC-FINSGFLSLNVN 148 (150)
Q Consensus 133 ~~~~-~l~s~~~~~~v~ 148 (150)
|... .|++|+.++.+.
T Consensus 355 p~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVK 371 (423)
T ss_pred CCCceEEEEEecCCeEE
Confidence 9665 588998887654
No 101
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-19 Score=118.86 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=117.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------ 74 (150)
++|++++..+++++.||++|+|+.++...+.....|..+|.++.|+|||++|++-+.| ..++|+..+. ..++
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5789999999999999999999988877777777889999999999999999999999 9999998542 0000
Q ss_pred ------------------------------------------------ccccccccceeEee-ecCCCEEEEecCCCcEE
Q 031924 75 ------------------------------------------------RFVGLSPNSVDALL-KLDEDRVITGSENGLIS 105 (150)
Q Consensus 75 ------------------------------------------------~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~ 105 (150)
+... ....|.++. +.+|++++.|+.||.|-
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 0000 123577777 88999999999999999
Q ss_pred EEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 106 LVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 106 ~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+++..+.+.++.++ .|.. -|+.+.|+||.+++++-+.+....
T Consensus 307 i~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCcee
Confidence 99999888777664 6767 599999999999999877665443
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.6e-20 Score=128.93 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=125.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|-+.+.+.++.|..+.+||.+...+.....+|..-+..+.|+|+|++++.++.|.+++|||.. -++....|.. |
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~ef~~-~ 195 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKEFKS-H 195 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc-cccccccccc-c
Confidence 4699999999999999999999999777888889999999999999999999999999999999985 5688899998 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+..+..+. .|..-++++|+.|+++++||+++-+.+........ +|.+.+|+|+++.+++|-.
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC-CceeeeecCCceeeecCch
Confidence 99988887 67777889999999999999998887777755545 7999999999999988764
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=8.1e-20 Score=122.53 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=122.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.+||.+..++++.||.|.|||+.....++.+++|.+.+.|+.++++|..|.+|+.|.+++-||+++. +..+... .
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg-rqlqqhd--F 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG-RQLQQHD--F 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh-hhhhhhh--h
Confidence 467899999999999999999999999899999999999999999999999999999999999999754 4443332 2
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...|.++- .|++.+++.|..++.+.+......+ ...+..|+.- |.++.|.+.|+++++.+.+..+|.
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheSc-VLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESC-VLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccE-EEEEEecccCceeeecCchhhhhh
Confidence 45677877 8999999999999999988874333 3344467774 999999999999999999887774
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=105.72 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=112.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------C--------ee-eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N--------TV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------~--------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
++|+|.|.+.++|+..++++|..... + .. -++-+.|.+.+.|.+|+|+|+.+++|+.|.+|++.-
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999999875422 1 01 134456788999999999999999999999999865
Q ss_pred cccc---------------------------------------------------cccccccccccccceeEeeecCCCE
Q 031924 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (150)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (150)
+... ++..+.+.+ |...|.++.+.++-+
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 4321 233445567 788888888888899
Q ss_pred EEEecCCCcEEEEeccCCeeeeeccC--C----CCcceeEEEEcCCccEEEecccccc
Q 031924 95 VITGSENGLISLVGILPNRIIQPIAE--H----SEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+++|++|.+|++||++-..++.++.. | +...|.++++.|.|++|++|-.+..
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999999999999998777776631 1 1235999999999999999876543
No 105
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=4.2e-19 Score=115.78 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=119.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+| +.+.|++|+.|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|.+|.+|++.+ +.
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t-ge 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT-GE 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC-Cc
Confidence 46888 6789999999999999998764 346778899999999999997 66788999999999999964 44
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..-++. |+..|.++. +.+|.++++.+.|..||+||.++++.+..-..|++....++.|-.+|.++.||..
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence 444443 899999998 8899999999999999999999999988888898877888999999996655554
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.6e-19 Score=116.59 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=121.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc--------ccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~--------~~~~~ 73 (150)
+-+|+|.+++.|...+.|++|.+.+|+.+..+..|-..|+|+.|+-||.+|++|+.||.|.+|++-. ..+..
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 3467898999998999999999999999888889999999999999999999999999999998631 12445
Q ss_pred cccccccccceeEee-ec--CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 74 DRFVGLSPNSVDALL-KL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|.. |.-+|+.+. .+ ....+++++.|.++++||+..+..+.++.. +. ++.+++++|-++.+..|+..|+|
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~-si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PS-SIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CC-cceeEEEcccccEEEecCCcceE
Confidence 66777 888899876 22 446899999999999999999998887743 34 69999999999999999988876
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=9.9e-20 Score=119.04 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=112.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.++++||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 468889999999999999999999999888899999999999988876666777777777777776421
Q ss_pred --------------------------------------------------------------------cccccccc----
Q 031924 70 --------------------------------------------------------------------KDCSDRFV---- 77 (150)
Q Consensus 70 --------------------------------------------------------------------~~~~~~~~---- 77 (150)
..+.+.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 00011111
Q ss_pred -cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-ceeEEEEcCCccEEEecccccccc
Q 031924 78 -GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 -~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ..+.-..+.+|++.++++|+.||.|++|+..++++...+...... .|++++|+|.|..+++++....+.
T Consensus 385 k~-asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 385 KC-ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred cc-ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 0 011122344899999999999999999999999988777544331 499999999999999998776553
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-19 Score=111.02 Aligned_cols=141 Identities=15% Similarity=0.189 Sum_probs=113.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-cccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~ 80 (150)
-|.+|++++.||+|-||.-+.++- ......|...|++++|.|. |-.|++++.||+|.+++.+..+ -...++...|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 689999999999999999888753 3445678999999999997 7788999999999999987553 3333333228
Q ss_pred ccceeEee-ecC---C-----------CEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCc----cEEE
Q 031924 81 PNSVDALL-KLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVL----CFIN 139 (150)
Q Consensus 81 ~~~v~~~~-~~~---~-----------~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~ 139 (150)
+-.++++. .|. | +.|++|+.|..|++|+..+++ ..+.+..|.++ |+.++|.|.- .+||
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-VRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-VRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh-hhhhhhccccCCCceeeE
Confidence 88888776 332 3 579999999999999987654 44568899997 9999999964 5799
Q ss_pred eccccccc
Q 031924 140 SGFLSLNV 147 (150)
Q Consensus 140 s~~~~~~v 147 (150)
+|+.+++|
T Consensus 228 S~SqDg~v 235 (299)
T KOG1332|consen 228 SCSQDGTV 235 (299)
T ss_pred EecCCCcE
Confidence 99999876
No 109
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=114.90 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=114.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+.|++|+.|.+|.+||+.++++...+..|...|.++.|+|. ...|++|+.|+++.++|.+........++. .+.|.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceE
Confidence 468999999999999999999999999989999999999996 778899999999999999854444444442 44566
Q ss_pred Eee--ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 86 ALL--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~--~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
.+. ......++++..||+++-+|++. ++++.++.+|.+ +|.++++++.. .++++++.+..|+
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEE
Confidence 555 44566888889999999999986 489999999999 79999999854 5688888776654
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=4.8e-20 Score=123.60 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=120.1
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
..||++.|++|+.-.++.|||+........ +........+++.+||.+..++++.||.|.|||+. ....+..|.+ |
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqG-h 550 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQG-H 550 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccC-C
Confidence 578999999999999999999987654322 22222356678899999999999999999999996 4578889999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++...|+. +++|..|-+|+-|.+||-||++.++.++... ... .|.++-++|++.+++.|-.+++|-.
T Consensus 551 tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~S-QIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSS-QIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhh-hheecccCCCccceeeecccCcEEE
Confidence 99999998 9999999999999999999999988766552 234 3999999999999999988887754
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.8e-19 Score=112.88 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=115.4
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
|-..++++++++.|.+-.+||+++++.+..+.+|+..++-++-+|..+.+++.+.|.+.++||++..-..+..|.+ |.+
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 4456889999999999999999999999999999999999999999999999999999999999855466778889 999
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+++.....+..+++|+.|.+|++||+++.+ ++.++... . +++.++.+..+..||.
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd-S-~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD-S-PANRVAVSKGHPIIAI 415 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC-C-ccceeEeecCCceEEe
Confidence 9999988888899999999999999998765 56666332 3 5777777766666654
No 112
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=4.3e-18 Score=118.67 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=121.2
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeee-eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
..++.+++.+.+|++||..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||.. .+.+...+.+ |.+.+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988776 99999999999998888999999999999999974 6799999999 998888
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++. ..+..+++|+.|.+|++|++.++..+..+.+|.+ +|.++..+ +.++++|+.++.|.
T Consensus 296 ~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 296 CLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred EEE-ccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEE
Confidence 775 4456778899999999999999999999988888 79999988 88999999988664
No 113
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=109.89 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=115.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
+.|++.|.++++|+.||.|-|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..+.+||+... .+.+++.-.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 368999999999999999999999998777778899999999999999999999999999999998643 222221100
Q ss_pred -------ccc---------------------cee---------------E--eeecCCCEEEEecCCCcEEEEeccCCee
Q 031924 80 -------SPN---------------------SVD---------------A--LLKLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 80 -------~~~---------------------~v~---------------~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
|+. ++. + ...+.|+++++|...|.+.+++..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 000 000 0 0134567999999999999999999888
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..++......|..+.++..|++++.-+.+-.|.
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence 8777655423599999999999999887776554
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.8e-18 Score=119.54 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=119.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
++|+-+|+.++.|+.|-.|++.++........+.+|+++|.++.|+|.+.+|++.+.||+|++||+. .+.+..++.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCC
Confidence 3678899999999999999999999988888999999999999999999999999999999999995 44555544421
Q ss_pred ----cc-ccee-Eee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcCCccEEEecccccccc
Q 031924 80 ----SP-NSVD-ALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ----~~-~~v~-~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. ..+. ... +|++..++....|+.|++|+.........+... ....+..+.|+|.|+|||+++.++.|-
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 01 2222 233 888888888999999999999888776666432 222489999999999999999988763
No 115
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.3e-18 Score=109.71 Aligned_cols=141 Identities=12% Similarity=0.172 Sum_probs=110.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccccc-ccccccc-cc
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSP-NS 83 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~-~~ 83 (150)
..++++...|.|++||..+++.+..+++++..++.++|.. ....+.+++.||+|++||++..++..+ .+.. ++ .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 4578888999999999999999999999999999999987 366789999999999999986543332 2334 44 34
Q ss_pred eeEee-ecCCCEEEEec----CCCcEEEEeccCCee-eeec-cCCCCcceeEEEEcC-CccEEEeccccccccCC
Q 031924 84 VDALL-KLDEDRVITGS----ENGLISLVGILPNRI-IQPI-AEHSEYPIESLGIAS-VLCFINSGFLSLNVNPL 150 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~~~ 150 (150)
..++. ..+++.+++|. .+-.+.+||++..+. +..+ ..|.+ .|++++|+| +.+.|+|||.+|-||.+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEee
Confidence 55666 44777888876 356899999987654 5544 46777 599999999 56899999999999864
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=7.4e-18 Score=107.22 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=115.9
Q ss_pred eecCc--ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc------
Q 031924 3 FAADA--MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (150)
Q Consensus 3 ~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------ 74 (150)
|.+.- ..|++|+.||.|.+|+....+.+..+++|.+.|+.++++|.++..++.+.|+.+++||+-.. +.-.
T Consensus 91 F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G-r~a~v~~L~~ 169 (362)
T KOG0294|consen 91 FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG-RVAFVLNLKN 169 (362)
T ss_pred ecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC-ccceeeccCC
Confidence 44433 38899999999999999999999999999999999999999999999999999999997321 1000
Q ss_pred ------------c-------------------c--ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 75 ------------R-------------------F--VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 75 ------------~-------------------~--~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
. + .. .+..+.++...++..+++|..|+.|++||..+..++..+.+|
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 0 0 00 112233444667889999999999999999988899999999
Q ss_pred CCcceeEEEE--cCCccEEEeccccccccC
Q 031924 122 SEYPIESLGI--ASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 122 ~~~~i~~~~~--~~~~~~l~s~~~~~~v~~ 149 (150)
+. .|..+.+ .|++.+|+|+|.+|.|..
T Consensus 249 ~~-RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 249 EN-RVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hh-heeeeEEEecCCceEEEEeccCceEEE
Confidence 88 6988884 578999999999998864
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.6e-17 Score=102.60 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=112.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEcccccc--cccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~ 77 (150)
..|++|++++.|++|+||..+.+ +.+..+.+|.+++..++|.. -|..|+++++||+|.||.-. .++ ......
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-~g~w~k~~e~~ 99 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-NGRWTKAYEHA 99 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-CCchhhhhhhh
Confidence 35889999999999999999874 45788999999999999975 59999999999999999864 343 233445
Q ss_pred cccccceeEee-ec--CCCEEEEecCCCcEEEEeccCC-e--eeeeccCCCCcceeEEEEcCC---c-----------cE
Q 031924 78 GLSPNSVDALL-KL--DEDRVITGSENGLISLVGILPN-R--IIQPIAEHSEYPIESLGIASV---L-----------CF 137 (150)
Q Consensus 78 ~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~~~~-~--~~~~~~~~~~~~i~~~~~~~~---~-----------~~ 137 (150)
. |...++++. .| -|-.|++++.||.|.+.+.+.. . ..+....|+- .++++.|.|- | +.
T Consensus 100 ~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 100 A-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred h-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccce
Confidence 6 889999988 44 4568999999999999988654 2 3344457766 7999999986 5 56
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
|++|+.+..|.
T Consensus 178 lvSgGcDn~Vk 188 (299)
T KOG1332|consen 178 LVSGGCDNLVK 188 (299)
T ss_pred eeccCCcccee
Confidence 89999887764
No 118
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=4.9e-17 Score=100.68 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred CeeecCcceEEEEcC----------CCeEEEEEcCC-Ceeeeeecc-CCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVC--GSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~ 66 (150)
|.|+|+|++|+.-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.|++ |..++.+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 468999987776433 13455555532 223333332 3457999999999998754 446789999998
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+ .+.+..+. ...+..+. +|+|++++.++. .|.+.+||.++.+.+... .|.. +..++|+|||++++++.
T Consensus 91 ~--~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~--~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSD--ATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCc--EEEEEEcCCCCEEEEEE
Confidence 5 45555553 34556666 999999998864 467999999988888776 3433 78999999999999987
Q ss_pred cc
Q 031924 143 LS 144 (150)
Q Consensus 143 ~~ 144 (150)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 65
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=109.41 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=115.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEccccc-------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~------- 70 (150)
|.|+|....+++++.|+++++|.+... ..++.+.-...++.+..|.|+|. .+++++....++.||+..-.
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 468999999999999999999988653 34556666677999999999998 88899999999999985320
Q ss_pred -----ccccccc-----------c-------------------ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 71 -----DCSDRFV-----------G-------------------LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
+....|. | +.++.+..+. +.+++.|++.+.+|.|++||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 1 0123344454 66888999999999999999999999
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++.+.......-++++.++++.++|+|+.+|.||-
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 99886655544667888999999999999999985
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.7e-17 Score=105.12 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=100.0
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------------
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------------- 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------------- 69 (150)
...+++|+-||.|+.+|+.+++ ...+..|...++|+.+++....+++|+.|++|++||.+..
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v 143 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV 143 (323)
T ss_pred CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec
Confidence 3455666666666666666653 2345678889999999998888999999999999998732
Q ss_pred -------------------------------------------------------c--------------cccccccccc
Q 031924 70 -------------------------------------------------------K--------------DCSDRFVGLS 80 (150)
Q Consensus 70 -------------------------------------------------------~--------------~~~~~~~~~~ 80 (150)
+ +....|+. |
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC-H 222 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-H 222 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe-e
Confidence 0 11112222 2
Q ss_pred c---------cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 81 P---------NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 81 ~---------~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. -+|.++. +|-...|++|+.||.|.+||+.+.+.+..+...+. .|.+++|+.+|..||.++..
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEech
Confidence 2 1344555 55667899999999999999999988888877666 59999999999999988753
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=9.7e-18 Score=115.81 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=112.7
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
|++ .+++|+.|++|++|.- ++.++.+.+|.+.|+.+++.+++. |++++.||.|++|++. +.++.++.+ |.+-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 8889999999999975 667888999999999999998754 7788899999999984 688888889 99999
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.++. .+++..++++++|+++++|+.. .+.+.+ .|+...|.++.+-++|.. ++|+.+|.|..
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgDI-vvg~SDG~VrV 284 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGDI-VVGGSDGRVRV 284 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEE-ecCccceEEEEEeeCCCE-EEeccCceEEE
Confidence 9998 7889999999999999999975 777777 445546999999888874 56667777654
No 122
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=3.9e-18 Score=111.41 Aligned_cols=142 Identities=15% Similarity=0.311 Sum_probs=116.0
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCe---------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNT---------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-- 69 (150)
.|.++.. .+++|+.|..|++|.++.+. .+..+..|...|+++.|+|+|..|++|+.+|.+.+|-....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555544 89999999999999987632 23456688999999999999999999999999999976410
Q ss_pred ----c---------ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 70 ----K---------DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 70 ----~---------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
. .....+.+ |...+..++ +++++.+++++.|..+++||+..++.+..+..|..+ ++.++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-vqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-VQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-cceeecchhh
Confidence 0 11122345 667777776 899999999999999999999999999999999887 9999999999
Q ss_pred cEEEeccccc
Q 031924 136 CFINSGFLSL 145 (150)
Q Consensus 136 ~~l~s~~~~~ 145 (150)
+++++-+.+-
T Consensus 178 qyv~s~s~dr 187 (434)
T KOG1009|consen 178 QYVASKSSDR 187 (434)
T ss_pred hhhhhhccCc
Confidence 9999877654
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.3e-17 Score=108.14 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=119.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC---------CeeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.|+-|+..|++++.||.|.+|++.. -++...+..|.-+|+++...+. ..++++++.|.++++||+. .
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-L 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec-c
Confidence 46888999999999999999998643 2456778889999999998875 5689999999999999995 5
Q ss_pred cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC----------------eeeeeccCCCC-cceeEEEE
Q 031924 70 KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN----------------RIIQPIAEHSE-YPIESLGI 131 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~----------------~~~~~~~~~~~-~~i~~~~~ 131 (150)
+..+.++.. +..+.++. .|.++.++.|+.+|.|.+.++... ..+..+.+|.+ .+|+++++
T Consensus 208 g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 GVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceeeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 677776654 77788887 899999999999999998876421 13344456655 35999999
Q ss_pred cCCccEEEeccccccccC
Q 031924 132 ASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 132 ~~~~~~l~s~~~~~~v~~ 149 (150)
+-||.+|++|+.+++|+.
T Consensus 286 s~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCV 303 (476)
T ss_pred ecCccEEEeeCCCCCEEE
Confidence 999999999999999874
No 124
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.76 E-value=2.7e-18 Score=106.46 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=120.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+.|.++|++|+.++-+++||++..+ +...+.+|.+.|..+.|....+.+++.+.|++||+||.+ .+..++++..
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLEF- 183 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEec-
Confidence 4789999999999999999999998865 457788999999999999998999999999999999987 4577777754
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.+++++- +++|+++.++ ..+.|.+||..+-..++.+... . .|.+..++|+..+++.|+.++.+..
T Consensus 184 -~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~-nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 184 -NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-C-NVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred -CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-c-ccccccccCCCceEEecCcceEEEE
Confidence 66788877 7788776654 5678999999998888877443 4 3999999999999999998887653
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=6.5e-17 Score=102.51 Aligned_cols=139 Identities=12% Similarity=0.159 Sum_probs=108.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe------------ee---eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT------------VQ---TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~------------~~---~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
.++++++|+.||.+.+||++.-. ++ ..-.+|...|.++.|-| |...|.+++-|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58899999999999999997632 11 11235667899999998 5667889999999999998643
Q ss_pred cccccccccccccceeEee-ec---CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE-EEecccc
Q 031924 70 KDCSDRFVGLSPNSVDALL-KL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF-INSGFLS 144 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~~ 144 (150)
+....|+- ++.|..-. +| ..-++++|..+-.|++.|+.++...+.+.+|.+ .|.++.|+|...+ |++|+.+
T Consensus 135 -Q~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 44445543 45565443 33 345788888899999999999999999999999 5999999998775 7899988
Q ss_pred cccc
Q 031924 145 LNVN 148 (150)
Q Consensus 145 ~~v~ 148 (150)
+.|.
T Consensus 211 g~ir 214 (397)
T KOG4283|consen 211 GAIR 214 (397)
T ss_pred ceEE
Confidence 8764
No 126
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=1.4e-17 Score=114.85 Aligned_cols=142 Identities=14% Similarity=0.116 Sum_probs=115.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCe-------eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT-------VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+.|+| |...|++++.||.|++|.+..+. ....+..|.+.|.++.|+|- ...|+++++|.+|++||+. ..+
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh-hhh
Confidence 46888 78899999999999999987642 34667889999999999995 6778999999999999996 457
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
...++.+ |.+.|..++ +++|+.+++.+.||++++|+.++++ .++.=....+..--++.|.-||++++..+.+
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 7788889 999999998 9999999999999999999998754 3333222222234568898999987766654
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.2e-17 Score=103.85 Aligned_cols=141 Identities=10% Similarity=-0.009 Sum_probs=107.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc-----
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----- 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~----- 68 (150)
+.||+|+++++++..--|++|.+--++ ....+++|...|..++|+++.+.+++.+.||+.++||.+-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 579999999999998899999974322 3467889999999999999999999999999999999741
Q ss_pred -ccccccccc----cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecc
Q 031924 69 -FKDCSDRFV----GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 69 -~~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
..+.++... .+...++.-..+|+|+.|+.+. ...++++..++++....+. .|.. .|.+++|+++|+++++++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG 392 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec
Confidence 112222221 1023444333488888887654 4589999988887666654 5666 599999999999999998
Q ss_pred cc
Q 031924 143 LS 144 (150)
Q Consensus 143 ~~ 144 (150)
.-
T Consensus 393 dr 394 (420)
T KOG2096|consen 393 DR 394 (420)
T ss_pred ce
Confidence 53
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=3.9e-17 Score=112.88 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=115.9
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (150)
.+++||-|.++++|-. +++...+++|+..|.+++.-|++ .+++|+.|.+|++|.- ++..++|.+ |.+-|..++
T Consensus 114 ~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 4899999999999976 44566689999999999999987 7899999999999984 588999999 999999999
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
-.++..+++++.||.|++|++ +++++..+.+|..+ +.++...+++..+++++-+..+
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~-vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF-VYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccceE-EEEEEecCCCCeEEEecCCceE
Confidence 777888999999999999999 78888888899997 9999988999999999988765
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=105.76 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=115.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-cEEEEEEEeCCCEEEeecCCCeEEEEEccc-----cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~-----~~~~~~ 74 (150)
++|+.+++.|++++++|.|.+||+++..++.++....+ .-++++.++++.+|++|+..|.|.|||... ..+.+.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 46888999999999999999999999988877764322 346777889999999999999999999532 124445
Q ss_pred ccccccccceeEee-ecCCCEEEEecC--CCcEEEEeccCCeeeeeccCCCC--cceeEEEEcCCccEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++.. -...|+.+. +++.++|+.++. +..+|+..+.+......++.... -.+++++|+|.+-++|.|.-.+.|.
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 5544 456677887 888898887774 56899999988887777754432 1399999999999999998887764
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.8e-16 Score=108.38 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=115.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
|+.+|.+..++.|+.||.+..++...++.. ..+...++++.++.|+|++..++.|+.||.|++||... +.......
T Consensus 116 iai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~ 194 (691)
T KOG2048|consen 116 IAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITM 194 (691)
T ss_pred EEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeee
Confidence 466888999999999998888888887654 33445678999999999999999999999999999853 33333111
Q ss_pred ---ccc---ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 78 ---GLS---PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 78 ---~~~---~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.. +.-|-++.......|++|.+.|.|.+||...+..++.+..|.. .|.+++.++++..+.+++.+..|
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCce
Confidence 101 1122244455778999999999999999999999999999988 59999999999999999988765
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.3e-16 Score=99.34 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=102.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|.|+|.+..|++++.||.+++||......... ..|..++.+++|.+ ...+++|+.||.|+++|+.. .....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~--~~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT--GNEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecC--Ccceeecc-C
Confidence 46888888888999999999999988744433 45788999999987 55689999999999999853 33334445 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++.|+. .+....+++|+.|++|++||.+.......+... . .|.++..+ |..|+.|+.
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v~--g~~LvVg~~ 153 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDVS--GNRLVVGTS 153 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEecc--CCEEEEeec
Confidence 99999998 777789999999999999999875555555332 3 47766654 444555443
No 132
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.8e-16 Score=100.14 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=112.7
Q ss_pred eeec--CcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccc
Q 031924 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+| +++.+++. .|+++..||+++.+....++ .|...+..+.|+|+.+ .|++++.||.|++||.+.....++.+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5777 78888887 78899999999877655544 6777899999999865 468899999999999998778889999
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-----------------------------eeeeeccCCCCcce
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (150)
+ |..++-++- +| -.+++++++.|..|.+|...+- ..++++..|++ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 999999887 44 5679999999999999864210 13335667888 69
Q ss_pred eEEEEcC-CccEEEeccccccc
Q 031924 127 ESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 127 ~~~~~~~-~~~~l~s~~~~~~v 147 (150)
.+++|+. |--.+|+-+.+|.+
T Consensus 334 Y~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred EEEeeccCCCeeEEEeccCceE
Confidence 9999986 55567777776654
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=3.8e-16 Score=105.04 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=110.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+.+|+.+++++++.|+++++|+ ..+++... ...++..|+.|+|.| .++.|+..|...+.|.++ +..-++.. ..
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d~ 447 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-DN 447 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-cC
Confidence 5578899999999999999999 44444433 346788999999999 899999999999999863 33333333 46
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+++++. +|+|.+|+.|+.|+.|++|.+.. +........+.+.+|+.+.|++|++++.+-+.+..
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 7788888 99999999999999999998754 55555555555568999999999999998877654
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=100.94 Aligned_cols=141 Identities=11% Similarity=0.150 Sum_probs=116.9
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+| +.+.++.++...++-||.-..++++..+-+|.+.|+-+.|.++|+.|++|.. |-.|..||++.....+..+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 46888 5669999999999999998888899888999999999999999999999985 578999999877666665554
Q ss_pred ccc----cceeEeeecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 79 LSP----NSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~~~----~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|. .+|..-..+++++|++|+.||.|++||++. +.....+..+.+ .++.++++|--..+|+++.
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSG 360 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccC
Confidence 43 233333388999999999999999999987 666677777777 4999999999888888764
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=4.5e-17 Score=113.63 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=111.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---CCEEEeecCCCeEEEEEccc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGY--------- 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~~~~~--------- 68 (150)
++.+|++++|++|...|.+++|++..-+....++.|+.+|.|+.|+.. .+.|++++.|.-|.+||+..
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 468999999999999999999999776555555666666666666532 34455556666666665532
Q ss_pred --------------------------------------------------------------------------------
Q 031924 69 -------------------------------------------------------------------------------- 68 (150)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (150)
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence
Q ss_pred --ccccccccccc--c-ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 69 --FKDCSDRFVGL--S-PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 69 --~~~~~~~~~~~--~-~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.++..+.|++. | ...|+....|.|.++++.+.|.++.++|..+++++..+.+|.. .|+.+.|.+|.+.|.+.+.
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecccchhheeecC
Confidence 25666667652 2 2335555588999999999999999999999999999999988 5999999999999999988
Q ss_pred cccc
Q 031924 144 SLNV 147 (150)
Q Consensus 144 ~~~v 147 (150)
++-|
T Consensus 704 DgCI 707 (1080)
T KOG1408|consen 704 DGCI 707 (1080)
T ss_pred CceE
Confidence 8754
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=1.9e-15 Score=99.22 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=99.0
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+.+++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.+++||... ++....+.. +......
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCCccEE
Confidence 567888999999999999988877776543 46789999999876 5677889999999863 355555544 4333322
Q ss_pred eeecCCCEEEE-ecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 87 LLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 87 ~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+++++.+++ ++.++.+++||+.+.+.+..+..+ . .+..++|+|+|+++++++.+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCC
Confidence 33788886655 456899999999888777666432 2 367899999999998877643
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.6e-16 Score=98.90 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=102.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-----eeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccc--ccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYF--KDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~--~~~ 72 (150)
|+|+.||++|++++.|+.|++|+++... +++. .-.-+-.+.+.|+||-+-++.. -...++++|-+... +..
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 6899999999999999999999998742 1211 1122356889999996655544 45568999976321 111
Q ss_pred ccc--------cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 73 SDR--------FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 73 ~~~--------~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
... |..+|.-.+..+- ..++.+|++++.|..|.+|+++ ++.++.+..... .-...++||+|+++++++.
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecC
Confidence 111 1111222233333 4567899999999999999997 888888866544 4677899999999999998
Q ss_pred cccccC
Q 031924 144 SLNVNP 149 (150)
Q Consensus 144 ~~~v~~ 149 (150)
.-.|.+
T Consensus 249 TpDVkV 254 (420)
T KOG2096|consen 249 TPDVKV 254 (420)
T ss_pred CCCceE
Confidence 777653
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=2.5e-16 Score=99.87 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=111.0
Q ss_pred eec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---CCEEEeecCCCeEEEEEccccccccccccc
Q 031924 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 3 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|-| |.-.+.+++.|.++++||..+-+....++ .++.|.+-+++|- ...+++|..+-.|++.|+. .+...+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 555 55677788899999999999876554443 5677888888874 5577889999999999995 6788999999
Q ss_pred ccccceeEee-ecCC-CEEEEecCCCcEEEEeccCC-eeeeec--------------cCCCCcceeEEEEcCCccEEEec
Q 031924 79 LSPNSVDALL-KLDE-DRVITGSENGLISLVGILPN-RIIQPI--------------AEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
|...|.++. +|.. -.|++|+.||.|++||++.. .++..+ .+|.+ .+..++|+.++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 999999887 6654 46788999999999999753 233322 24555 49999999999999999
Q ss_pred ccccccc
Q 031924 142 FLSLNVN 148 (150)
Q Consensus 142 ~~~~~v~ 148 (150)
+.+..+.
T Consensus 265 gtd~r~r 271 (397)
T KOG4283|consen 265 GTDDRIR 271 (397)
T ss_pred cCccceE
Confidence 9876543
No 139
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=1.4e-16 Score=105.57 Aligned_cols=143 Identities=14% Similarity=0.226 Sum_probs=116.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee----ee-------------e-ccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR-------------S-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
|+++|+.++.++++.+++|.-|++.+++.. .+ . +.|...+.+++.++||++|++|+.|..+.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 467899999999999999999999887632 11 1 25667899999999999999999999999
Q ss_pred EEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
||+.+ ..+.++.+++ |.+.|.+++ ......+++++.|+.+++|++.....+.++-+|.+ .|..+.....++.+..|
T Consensus 228 Iw~~~-t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCD-TLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCc-ccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 99986 4477778899 999999998 44557899999999999999987777777778887 47777776667666666
Q ss_pred ccccc
Q 031924 142 FLSLN 146 (150)
Q Consensus 142 ~~~~~ 146 (150)
+.+..
T Consensus 305 grDrT 309 (479)
T KOG0299|consen 305 GRDRT 309 (479)
T ss_pred cccce
Confidence 55543
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=9.7e-17 Score=103.94 Aligned_cols=137 Identities=10% Similarity=0.094 Sum_probs=100.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------------------
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------------ 69 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------------ 69 (150)
..+++|+.||.|++||+.+.+++..++.|.+.|..+++.. ..++++++|.+|+.|-+...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 5788999999999999999999999999999999999987 56788889999999974211
Q ss_pred --------c-----------ccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeee-----------
Q 031924 70 --------K-----------DCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQP----------- 117 (150)
Q Consensus 70 --------~-----------~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~----------- 117 (150)
| ..++.+.. ....+.++. +| ....|+++.+|+.|.+||++.+.+++.
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred ccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 1 11222222 233445555 34 345778888999999999887654443
Q ss_pred -------------------------------ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 118 -------------------------------IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 118 -------------------------------~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.. .|.+++|||.|+-+++||.+-.|.
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccce-eEEEeccCCCcchhccccccceEE
Confidence 223444 488899999999999999876653
No 141
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1e-16 Score=100.06 Aligned_cols=138 Identities=11% Similarity=0.133 Sum_probs=107.4
Q ss_pred eEEEEcCCCeEEEEEcCCCe----------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-ccc--ccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNT----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDC--SDR 75 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~--~~~ 75 (150)
++++|-++|++.+||+..+. .......|..++.++.+.+.-..=++|+.+..+.+|++... +.+ -..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 45566789999999999873 33445678889999999876555678888889999987532 111 111
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..- ....+..+. .+|++.+++++.|++||+|+.++.+++..++.|.+ .|++++|+|+..++|.++.+..|.
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEE
Confidence 122 223344444 88999999999999999999999999999999988 699999999999999999887663
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=7.3e-16 Score=98.80 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=103.1
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--------
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
.+.|+ .+++++++.|..|++|++++..++..+ .+|.+.|.++.|+++|.++++++.|.++++|++...
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 46675 468889999999999999999887554 688999999999999999999999999999998621
Q ss_pred ---------------------------------------------------------cccccc---cccccccc------
Q 031924 70 ---------------------------------------------------------KDCSDR---FVGLSPNS------ 83 (150)
Q Consensus 70 ---------------------------------------------------------~~~~~~---~~~~~~~~------ 83 (150)
++.... .+. .+..
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp-~es~~Ti~~~ 300 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKP-PESATTILGE 300 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCC-CccceeeeeE
Confidence 000000 000 0000
Q ss_pred -------eeEe---eecCCCEEEEecCCCcEEEEeccCCeee--eeccCC-CCcceeEEEEcCCccEEEeccccccc
Q 031924 84 -------VDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 84 -------v~~~---~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+-.+ ..+-++.|+.|.+.|.+++||++..++. .++..+ .+..|+..+|+.||.+|+..+.++.|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 0001 1233457889999999999999876542 122111 12359999999999999988877765
No 143
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=5.3e-16 Score=98.10 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=109.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee-eeeec-----cCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
+.|.|++..+++- .|+.|.+|+++.+.. ...+. .+....++-+|+| +++.+++. .|++++.||.++. ++
T Consensus 129 vew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~-~~ 205 (370)
T KOG1007|consen 129 VEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM-KK 205 (370)
T ss_pred EEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch-hh
Confidence 4688999988887 588999999988654 32222 2455788899999 47766665 7889999999854 44
Q ss_pred ccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
...+..+|...+..+. +|+. .+|++++.||.|++||.+. ..+++.+..|.-. +.+++|+|. .+++.+|+.+-.|+
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW-vW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW-VWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-EEEEEecCccceEEEecCCCceeE
Confidence 4444433888888887 5544 4788899999999999986 4478889888875 999999994 56788888877665
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=5.8e-16 Score=106.49 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=104.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD------ 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~------ 71 (150)
+.|-|....|+++++|.++++||+++.+.... ..+|.+.+.+++|+|. ...|++|+.||.+.|||++..+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 35778667899999999999999999887755 7899999999999996 45678999999999999875420
Q ss_pred -------------c-------cccccccccc----ceeEeeecCCCEEEEecC-CCcEEEEeccCCeeee------e--c
Q 031924 72 -------------C-------SDRFVGLSPN----SVDALLKLDEDRVITGSE-NGLISLVGILPNRIIQ------P--I 118 (150)
Q Consensus 72 -------------~-------~~~~~~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~------~--~ 118 (150)
. +.+-+. +.. .|+.+...|...|++++. |+.|+|||++...... . +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 0 000011 122 244455778899999887 9999999998643221 1 1
Q ss_pred cCCC--CcceeEEEEcCCccEEEeccccccc
Q 031924 119 AEHS--EYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 119 ~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|. ...+.++..+..|.+|...+.+..|
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 2221 1247778888888876666667665
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=4e-15 Score=95.50 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=110.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeec--cCCCcEEEEEEEeC----CCEEEeecCCCeEEEEEccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSE--FSEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+...+++..+.+.+.+|.....- .++... .+++....++|+-+ ..++++++.-|.|++.|+. .+++...+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNY 131 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccce
Confidence 34455555577799999887632 222222 35667788889865 4578899999999999985 56888889
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeecc---CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+ |...|..+. .| +.+++++++.|..||+|++++..++..+. .|.+ .|.++.|+++|.+|++|+++..+
T Consensus 132 ~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 132 RG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred ec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceE
Confidence 99 999999887 44 55799999999999999999999888774 6777 59999999999999999998654
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=6.8e-16 Score=98.91 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=114.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEc-CCCee--eee-----eccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QTR-----SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~--~~~-----~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+|||.+|++| ....|++||+ +.|+. ... -.+..+.+.+++|+|. .+.+++|++...+-||... ...
T Consensus 164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 5799999999988 6679999999 44532 111 2234678999999996 4588999999999999864 456
Q ss_pred cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccC-CeeeeeccCCCCcceeEEEE--cCCccEEEecccccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSEYPIESLGI--ASVLCFINSGFLSLN 146 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~~~~ 146 (150)
..+.+-+ |.+.|+-+. .++|+.|.+|.. |-.|..||++. +.++..+..|.+..-.++.| .|++++|++|+.+|.
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS 320 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence 7777778 999999988 889999999885 67999999985 44666776666533455555 589999999999999
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
|++
T Consensus 321 V~v 323 (406)
T KOG2919|consen 321 VRV 323 (406)
T ss_pred EEE
Confidence 875
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=6.8e-16 Score=102.48 Aligned_cols=146 Identities=8% Similarity=0.026 Sum_probs=108.4
Q ss_pred CeeecCc--ceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccc----
Q 031924 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (150)
Q Consensus 1 i~~~~~~--~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~---- 69 (150)
++|+|.. +.+++|...|+|-+||+.+.+ -+.....|..+|.++.|+|. -..+++.++||+|++-|++..
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788853 588888899999999995322 34566788999999999995 567889999999999887532
Q ss_pred ----------------------------------------cccccccccccccceeEee-ec-CCCEEEEecCCCcEEEE
Q 031924 70 ----------------------------------------KDCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLV 107 (150)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~ 107 (150)
+.....+.- |...|..+. +| ...++++++.|++.++|
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111122223 555677776 55 45689999999999999
Q ss_pred eccCCe-----eeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 108 GILPNR-----IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 108 d~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|++.-. .+..+ .|.. +|.++.|||.+--|++.+.+..|..
T Consensus 351 D~R~l~~K~sp~lst~-~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTL-PHRR-SVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred ehhhhcCCCCcceecc-cccc-eeeeeEEcCCCCceEeeccCCceEE
Confidence 997522 13333 6766 6999999998777999888887764
No 148
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=108.00 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=76.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+||+++|++.+.||.++|||..+.+.+...+..-+.+.|++|+|||+++++|+.|.-|.||.+. ..+.+.+-.+ |
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-erRVVARGqG-H 373 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-ERRVVARGQG-H 373 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec-cceEEEeccc-c
Confidence 4799999999999999999999999988887777788899999999999999999999999999985 4577777778 8
Q ss_pred ccceeEee
Q 031924 81 PNSVDALL 88 (150)
Q Consensus 81 ~~~v~~~~ 88 (150)
..+|..++
T Consensus 374 kSWVs~Va 381 (636)
T KOG2394|consen 374 KSWVSVVA 381 (636)
T ss_pred ccceeeEe
Confidence 88877654
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.2e-14 Score=92.68 Aligned_cols=71 Identities=6% Similarity=0.084 Sum_probs=54.8
Q ss_pred ccccccccceeEee-ecC-C---CEEEEecCCCcEEEEeccCC--------------------eeeeeccCCCCcceeEE
Q 031924 75 RFVGLSPNSVDALL-KLD-E---DRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESL 129 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~-~---~~l~~~~~dg~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~~ 129 (150)
++.+ |+.+|+.+. .|+ | .+|++++.|| |++|.+... +.+..+..|.+ .|.++
T Consensus 218 ~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv 294 (361)
T KOG2445|consen 218 ELPD-HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRV 294 (361)
T ss_pred hcCC-CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEE
Confidence 3446 778888887 442 3 3889999999 999998631 13344567888 59999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
.|+-.|..|++.|.+|.|.
T Consensus 295 ~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 295 RWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred EEeeeeeEEeecCCCceee
Confidence 9999999999999999875
No 150
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.9e-15 Score=96.63 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=119.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-- 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-- 75 (150)
.+|++|...++.+.....|.||...... ....+..|...+++++|+|..+.|++++.|..-++|.....+....+
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 3799999999999999999999987754 56788899999999999999999999999999999998444433222
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeee---e-eccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRII---Q-PIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~---~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
+.. +....+++. +|+++.|++|+.-..|.+|-.+....- + .-..+.. .|.+++|+|++-+++.|+.++...+|
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc-ceeeeeccCCcceecccccCcceeEE
Confidence 234 567788887 999999999999999999987654322 1 1123344 59999999999999999999887653
No 151
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=3.6e-16 Score=100.25 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=114.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc------cc-----------
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG------YF----------- 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~------~~----------- 69 (150)
...+.+++.|.+-+||.+++++++....+|.+.|++++|++.+..+++++.|++-.||... ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 3467788999999999999999999999999999999999999999999999999999621 10
Q ss_pred ----------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcce
Q 031924 70 ----------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI 126 (150)
Q Consensus 70 ----------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i 126 (150)
...+..+++ |...+.+.. -..++.+++++.|.+..+||++++++++.+.+|... .
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-L 317 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-L 317 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-c
Confidence 011223455 666666555 446789999999999999999999999999999884 8
Q ss_pred eEEEEcCCccEEEecccccc
Q 031924 127 ESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 127 ~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.++-+|..+++++.+.+..
T Consensus 318 tHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred cccccCCcceEEEEeccCce
Confidence 88899999999999887643
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.1e-15 Score=105.81 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=117.5
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
...++.+++++.+++|.+|....++....+...+-++++++++-+|++++.|+.|-.|++.++. .......+.+ |..+
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrg-h~ap 140 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRG-HDAP 140 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecc-cCCc
Confidence 3456789999999999999999887665666667789999999999999999999999999985 3456677788 9999
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC------C-CcceeEEEEcCCccEEEecccccccc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH------S-EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~-~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.++. +|++++|++.+.||.|++||+.++.+...+..- . ...+..++|+|+|..++.-+.+..|.
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 99999 999999999999999999999988766555321 1 22478899999977777666666654
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=7.7e-15 Score=102.18 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=60.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
++|-|||..++.+. +..+.+||...|..+..+++|.+.|.+++|+.||+.|++|+.|..+.+|+.
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 57999999999884 458999999999999999999999999999999999999999999999985
No 154
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=4.4e-15 Score=100.64 Aligned_cols=130 Identities=12% Similarity=0.230 Sum_probs=101.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCC--------------e--------------eeeeeccCCCcEEEEEEEeCCCE
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN--------------T--------------VQTRSEFSEEELTSVVLMKNGRK 51 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~--------------~--------------~~~~~~~~~~~v~~~~~~~~~~~ 51 (150)
+.|-|. ...++.+..+|.+.+||.+-- . ++.....-++.++..+|+|||++
T Consensus 225 ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 225 IKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred EEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce
Confidence 356663 456666778999999975320 0 11122222457889999999999
Q ss_pred EEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEE
Q 031924 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLG 130 (150)
Q Consensus 52 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 130 (150)
|++.++||.++|||+. ..+....++. .-....|++ +|||++|++|++|.-|.||.+..++.+..=++|..+ |+.++
T Consensus 305 LA~VSqDGfLRvF~fd-t~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW-Vs~Va 381 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFD-TQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW-VSVVA 381 (636)
T ss_pred EEEEecCceEEEeecc-HHHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc-eeeEe
Confidence 9999999999999985 3355566665 455677777 999999999999999999999999999888899996 99999
Q ss_pred EcC
Q 031924 131 IAS 133 (150)
Q Consensus 131 ~~~ 133 (150)
|+|
T Consensus 382 FDp 384 (636)
T KOG2394|consen 382 FDP 384 (636)
T ss_pred ecc
Confidence 996
No 155
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.65 E-value=6.8e-16 Score=101.37 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=112.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|-++...|++++.|..|++|+...++ .+..+.+..+.++.+.|.+++..+++++.|+.+++|++. ..+...++.+
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~TLsG- 259 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRHTLSG- 259 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhhhhcc-
Confidence 466777899999999999999998776 566777888899999999999999999999999999986 4477778888
Q ss_pred cccceeEeeecCC----------------------------------------CEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 80 SPNSVDALLKLDE----------------------------------------DRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 80 ~~~~v~~~~~~~~----------------------------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
|.+.+++.....+ ..+++|..|+.|++||+++..+...++
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEee
Confidence 8777776431111 134556666777777777666666665
Q ss_pred CCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 120 EHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+ + .|+++..++++..+.+++.+-+++.
T Consensus 340 ~g-g-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 340 LG-G-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred cC-c-ceeeEeeccCCeEEeeecCCCceee
Confidence 54 3 4999999999999998887766653
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.5e-14 Score=98.97 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc--cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~ 78 (150)
++|. ++..|++.+.+|.|.-||+.+.+.........+.+.+++.+|.+..++.|+.||.+..++.. .++... .+.-
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~r 152 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMR 152 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeeccc
Confidence 4677 55677788899999999999999999888888999999999999999999999977777764 333222 2223
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-----cCCC--CcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-----AEHS--EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+++++.++. .+++..++.|+.||.|++||..++..+... .... ..-|.++.|-.++ .|++|...|.|.
T Consensus 153 -q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 153 -QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred -ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 567888888 788888999999999999999988766622 1111 1127777777555 678888888764
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=5.7e-15 Score=102.48 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=111.4
Q ss_pred CeeecCcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++.+|+++++++++.. ..|++|+..+......+++|.-.|+.++|+|||++|++.+.|.++.+|...........
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 3678999999998754 45889999988888889999999999999999999999999999999987433222222
Q ss_pred ---cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeee--ccCCCCcceeEEEEcC-----CccEEEecc
Q 031924 76 ---FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLGIAS-----VLCFINSGF 142 (150)
Q Consensus 76 ---~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~--~~~~~~~~i~~~~~~~-----~~~~l~s~~ 142 (150)
.+. |..-|-.+. +|++.++++++.|..|++|..... +.+.. ...+.. +|+.+++.| .+..++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 345 766666666 899999999999999999988665 33322 224445 699998876 223667776
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
..|.|.
T Consensus 689 e~GeI~ 694 (764)
T KOG1063|consen 689 EKGEIV 694 (764)
T ss_pred cccEEE
Confidence 676653
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=8.7e-16 Score=106.23 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=110.7
Q ss_pred CcceEEE--EcCCCeEEEEEcCC-Ceee-eeec--cCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccc------cc
Q 031924 6 DAMKLLG--TSGDGTLSVCNLRK-NTVQ-TRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DC 72 (150)
Q Consensus 6 ~~~~l~~--~~~d~~i~i~d~~~-~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~------~~ 72 (150)
+.+.+++ .+..|.|.||+++. |+.- ..+. .....|+++.|.| |...|++++.||.|++|.+...+ ..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4444544 35578999999976 3321 1111 1245799999999 67889999999999999986443 22
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...++. |...|+++- +| -.+.|++++.|.+|++||+.+++....+..|.+ .|..++|||||+.+|+-+-++.+.+
T Consensus 670 e~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 670 EKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred ceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEE
Confidence 334556 888899887 44 567999999999999999999998888999999 4999999999999999999988764
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=9e-14 Score=91.28 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred CeeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.++++ ..++.+++||++. .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999876 456788999999999987766665443 35678999999877654 5689999999864 344455543
Q ss_pred ccccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE-eccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN-SGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~~~~v 147 (150)
. ..+..+. +++++.++++..++ .+..||..+++....+... . .+..++|+|++++++ ++..++.|
T Consensus 114 -~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 114 -G-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred -C-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEE
Confidence 2 2234555 88999999888765 5677898877765544322 3 367799999999875 44344443
No 160
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=5.1e-15 Score=100.57 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=95.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|||.-|+++++||.|++|.- +|-....+.-...+|.|++|.|+.+.++-+ ..+.+.+=-+.. ....-+.+. |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccc-ccceeEEec-cC
Confidence 58999999999999999999984 443333444556799999999986655443 334555544432 233345667 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+-|.++. ++..+++++|++|-..++||.. ++.+..-..|+- ||++++|+|+ +.++.+|
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey-~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY-AITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc-ceeeeeeccc-cceeeee
Confidence 9999988 8889999999999999999984 445555545544 6777666666 4444443
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2.2e-14 Score=90.95 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=102.8
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccc------------
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF------------ 69 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~------------ 69 (150)
+.++|.+++-|.+..|||++++. ....+..|..+|..++|...+ +.|++.+.||.+|+||++..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 56789999999999999999973 356777899999999999864 46789999999999999743
Q ss_pred -----------------------------------cccccccccccccceeEee-e-cCCCEEEEecCCCcEEEEeccCC
Q 031924 70 -----------------------------------KDCSDRFVGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 70 -----------------------------------~~~~~~~~~~~~~~v~~~~-~-~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
...+.++.+ |...|..+. . .....|++++.|..+.+||+...
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 122335557 888888887 3 36679999999999999999642
Q ss_pred e------eeeeccCCCCcceeEEEEcC-CccEEEeccc
Q 031924 113 R------IIQPIAEHSEYPIESLGIAS-VLCFINSGFL 143 (150)
Q Consensus 113 ~------~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~ 143 (150)
. ++-.+. ... .|+.+.|++ .+..++.+..
T Consensus 321 ~~~~~~dPilay~-a~~-EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 321 PRENGEDPILAYT-AGG-EVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccCCCCchhhhh-ccc-eeeeeeecccCCCEEEEEec
Confidence 1 222222 223 499999995 5677776653
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=4.2e-14 Score=91.96 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=109.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccC---CCcEEEEEEEeCCCEEEeec--CCCeEEEEEccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.+.|+++-.+ .|.|||++..+.+..+... ...+.++.+++.+.+++--+ ..|.|.+||..+ -+....+.. |
T Consensus 96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H 172 (391)
T KOG2110|consen 96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-H 172 (391)
T ss_pred ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-c
Confidence 44567676555 5999999999988777644 33455666666677887433 459999999853 366677777 9
Q ss_pred ccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+.+.+++ +++|.+|++++..| .||++.+.+++.+..+..... ..|.+++|+|++++|+..|.+..|..
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 99999999 99999999999998 589999999998888854332 24889999999999999998877753
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.1e-14 Score=99.00 Aligned_cols=146 Identities=22% Similarity=0.291 Sum_probs=111.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--- 69 (150)
++|.|....|++++.|+.+++|++++. +++..+.+|+++|.|+++.+++..+++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 357788889999999999999999431 356788999999999999999999999999999999954311
Q ss_pred ------cccccccccccc--------------------------------------------------------------
Q 031924 70 ------KDCSDRFVGLSP-------------------------------------------------------------- 81 (150)
Q Consensus 70 ------~~~~~~~~~~~~-------------------------------------------------------------- 81 (150)
......+.| |.
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 000000001 11
Q ss_pred -------------------------------cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEE
Q 031924 82 -------------------------------NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (150)
Q Consensus 82 -------------------------------~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 129 (150)
..+..+. .++..+.+++..|+.|+++|..+++.+....+|.. .++++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-eecce
Confidence 1122333 55667788888888888888888888888888888 59999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
++.|+|-+|++++.++.+.
T Consensus 538 ai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred eecCCCceEEeecCCceee
Confidence 9999999999999887663
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=3.3e-14 Score=95.92 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=112.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|+....+|++++..|.|.+..+.++.....+... ...+.-+.|+|..+++ .+++.+|.|.+||+... ..+..+...
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~ 206 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEA 206 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-Ccccchhhh
Confidence 46667889999999999999999988666555544 3466789999987664 67889999999998533 444444332
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|..+...++ +| +..+|++.+.|..|.+||++..+....+.. .. |...++|.++|.+|+.|...|.|-
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~-Plstvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SH-PLSTVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cC-CcceeeecCCceEEEeecCCceEE
Confidence 877777666 44 667889999999999999998777666643 23 799999999999999999988763
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.60 E-value=8.4e-15 Score=98.72 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=109.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
...++++++..+.|+|||++...+++.+++|.+.|+++.++-...+|++++..|-|.+..+.+ +.....|.......+.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSVR 168 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeEE
Confidence 447899999999999999997777888999999999999999999999999999999999853 3444455430223343
Q ss_pred Eee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 86 ALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
-+. ++ ...+|.+++.+|.|.+||.....++..+ ..|.. |...++|+|. ..+|++-+.+-.|+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-P~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-PCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC-CcCcceecCCccceEEEecccceEE
Confidence 444 44 3457788899999999999877666555 45655 8999999995 46788888887665
No 166
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=92.99 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=81.1
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..|+.|++.|.+|++|+.||.+.+||+.+. .....+.+ |..+|.+++ +++|+.|++++.|..+.+||+..+.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 689999999999999999999999999754 45566667 999999998 999999999999999999999999988887
Q ss_pred cCCCCcceeEEEEcCCcc
Q 031924 119 AEHSEYPIESLGIASVLC 136 (150)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~ 136 (150)
. ... ||..+.|+|..+
T Consensus 104 r-f~s-pv~~~q~hp~k~ 119 (405)
T KOG1273|consen 104 R-FDS-PVWGAQWHPRKR 119 (405)
T ss_pred E-ccC-ccceeeeccccC
Confidence 4 335 788999988543
No 167
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.4e-14 Score=92.02 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=115.3
Q ss_pred eEEEEcCC--CeEEEEEcCCCeeeeeeccCCC---------cEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccccc
Q 031924 9 KLLGTSGD--GTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 9 ~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.+++|+.. +.+.+||+++.+.+...+.... .++++.|-+. ...|++++.-+.+++||.+...+.+..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45557777 8899999999876655443221 4667888887 889999999999999999865577888
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.. -+.++.++. .|.++.+++|...+.+..+|++.++.+.. +....+ +|+++..+|.++++|+||++-.|.
T Consensus 243 fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 243 FDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred ecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEE
Confidence 877 788899888 89999999999999999999999987766 777777 699999999999999999998775
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=85.11 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=93.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-c
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-S 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~ 80 (150)
-..|..+.++.+++|+.++.||+++|+....+.+|.+.+.++.--.....+.+|+.||++++||.++ ++..+.+... +
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKN 199 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccC
Confidence 3567777777777999999999999999999999999999998855566799999999999999864 4554444210 1
Q ss_pred c--------cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 81 P--------NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 81 ~--------~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
+ .+|-++ ..+..++++|+ ...+.+|++++.++.+.++. +. ++..+.|..|.
T Consensus 200 ~~~lRp~~g~wigal-a~~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa-~v~~v~F~~d~ 258 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGAL-AVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PA-RVHLVDFVDDC 258 (325)
T ss_pred hhhcCcccCceeEEE-eccCceEEecC-CCceeEEeccCCCceEEEec-cc-ceeEeeeecce
Confidence 1 223333 33456776654 56889999998887766633 23 46667765543
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=1.4e-14 Score=95.01 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=106.4
Q ss_pred cceEEE---EcCCCeEEEEEcCC-Ceee---eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccc------cc
Q 031924 7 AMKLLG---TSGDGTLSVCNLRK-NTVQ---TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK------DC 72 (150)
Q Consensus 7 ~~~l~~---~~~d~~i~i~d~~~-~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~------~~ 72 (150)
.++|+. +++.|...+.-+.. |+.- -.+-+|.+++..++|+|- ...+++|+.|.+|.+|++...+ ..
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep 123 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP 123 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc
Confidence 344444 34555666655543 3322 344689999999999995 6678999999999999985432 23
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...+.+ |...|-.+. +| -.+.|++++.|..|.+|+..+++.+-.+. |++. |.++.|+.||.++++.+-+-.|..
T Consensus 124 vv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~-i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 124 VVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDM-VYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred eEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCe-EEEEEeccCCceeeeecccceeEE
Confidence 445567 888887776 44 45788999999999999999999887875 9895 999999999999999998877653
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=1.7e-14 Score=95.53 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=103.4
Q ss_pred cceEEEEcCCCeEEEEEcCCCeee---------------------eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQ---------------------TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~ 64 (150)
|+++|.|..|..|.|||+.-...+ ....+|++.|.++.|+.. ...|++|+.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999997532100 112357788889999886 5678999999999999
Q ss_pred EcccccccccccccccccceeEee-e-cCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCcc-EEEe
Q 031924 65 SWGYFKDCSDRFVGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLC-FINS 140 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 140 (150)
|+. .+++...+.. |...|.++. + .....+++|+.|++|.+.|.+. ...-..++. .+ .|..++|.|... .+..
T Consensus 272 D~~-~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g-~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 272 DVD-TGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DG-EVEKVAWDPHSENSFFV 347 (463)
T ss_pred EcC-CCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-cc-ceEEEEecCCCceeEEE
Confidence 996 5688888887 899999987 3 4678999999999999999984 222223322 24 399999999665 4555
Q ss_pred cccccccc
Q 031924 141 GFLSLNVN 148 (150)
Q Consensus 141 ~~~~~~v~ 148 (150)
+..+|.|.
T Consensus 348 ~tddG~v~ 355 (463)
T KOG0270|consen 348 STDDGTVY 355 (463)
T ss_pred ecCCceEE
Confidence 55566654
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.6e-14 Score=96.81 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=108.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeee-ccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccc--------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
++|+.+|.+|++|+.|-.+.|||....|.+..+ .+|...|.++.|-|. .+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877766554 589999999999984 667889999999999998631
Q ss_pred -cccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCe-e------eeec-cCCCC-cceeEEEEcCC-cc
Q 031924 70 -KDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNR-I------IQPI-AEHSE-YPIESLGIASV-LC 136 (150)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~-~------~~~~-~~~~~-~~i~~~~~~~~-~~ 136 (150)
......+.. |...|+.++ .+++ +.+.++++||+++.+|++.-. + ...+ ..+.. ....++..+|. ..
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 123334456 788888887 6655 789999999999999997522 1 1111 11111 13668899985 56
Q ss_pred EEEecccccc
Q 031924 137 FINSGFLSLN 146 (150)
Q Consensus 137 ~l~s~~~~~~ 146 (150)
+||.|+.+-.
T Consensus 215 ~laVGgsdpf 224 (758)
T KOG1310|consen 215 YLAVGGSDPF 224 (758)
T ss_pred eEEecCCCch
Confidence 7888876543
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.5e-15 Score=106.69 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=104.4
Q ss_pred CeeecCcce----EEEEcCCCeEEEEEcCCC------eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMK----LLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~----l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~ 69 (150)
++|.+.+.. |+.|..||.|.+||...- ..+.+...|.+.|..+.|++.+ +.|++|+.||.|.|||+...
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 457665544 888889999999998762 1346667899999999999975 59999999999999999643
Q ss_pred ccccccccc-ccccceeEeee-c-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCCc-cEEEecccc
Q 031924 70 KDCSDRFVG-LSPNSVDALLK-L-DEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLGIASVL-CFINSGFLS 144 (150)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~~~-~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~~l~s~~~~ 144 (150)
... ..... ...+.|.++.. . ....|++++.+|.+.+||++..+.+-.+..+.. ..+..++|+|+. ..+++++.+
T Consensus 150 ~tP-~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 150 ETP-FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred CCC-CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 222 12211 03456778773 2 456889999999999999998877666655544 347899999976 455555543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.58 E-value=4.3e-13 Score=90.80 Aligned_cols=142 Identities=21% Similarity=0.313 Sum_probs=110.9
Q ss_pred CeeecCcceEEEEcC-CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEccccccccc-ccc
Q 031924 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~-~~~ 77 (150)
+.|+|+++.++.++. ++.+++|+...++....+..|...+.+++|+|++. .+++++.|+.+++||.. .+.... .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468899988888875 99999999998878888888999999999999988 55555899999999875 344444 466
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCee-eeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+ |.........+++..+++++.|+.+++|+...... +..+..|.. .+.++.|+|++..+++++.++
T Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 240 G-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred C-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCC
Confidence 6 66553113467778888999999999999986553 444445655 699999999888888877663
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.5e-14 Score=99.24 Aligned_cols=147 Identities=11% Similarity=0.115 Sum_probs=121.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|...++++++.. .|++||+..++.++.+....-.+..++++|.|..|+.|+.|+.+..||+.-..+..+++.. |
T Consensus 572 v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 3689998999998555 8999999988777777776778999999999999999999999999999766678888888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEecc------CC---eeeeeccCCCC---cceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~------~~---~~~~~~~~~~~---~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..++.+. ++.=.++++|+.||++.++.-. .+ -+++.+.+|.. ..|..+.|+|..-+|.+++.++.|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 99999988 6677899999999999998532 11 14566666654 348888999999999999999887
Q ss_pred cC
Q 031924 148 NP 149 (150)
Q Consensus 148 ~~ 149 (150)
..
T Consensus 730 rl 731 (733)
T KOG0650|consen 730 RL 731 (733)
T ss_pred Ee
Confidence 54
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=96.93 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=117.3
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
-+.++.|+.+|.+.+|++++++.+..++.+.+.|+++.-+|-=..++.|..+|+|.+++++ .++.+.+|+. ..++|+.
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sFk~-d~g~Vts 249 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSFKQ-DWGRVTS 249 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEEEc-cccceeE
Confidence 3578889999999999999999999999999999999999988889999999999999996 5688888875 3588999
Q ss_pred ee-ecCCC-EEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccc
Q 031924 87 LL-KLDED-RVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 87 ~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+. ..||+ ++++++..|.+-+||++..+....+. .|.+ ++....|-|....+++++.+..
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCc
Confidence 98 55665 66777788999999998887666654 7767 6999999999999999988744
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-14 Score=105.62 Aligned_cols=145 Identities=8% Similarity=0.068 Sum_probs=116.2
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCC--CcEEEEEEEeCC-CEEEeecCC---CeEEEEEccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---~~i~i~~~~~~~~~~~ 74 (150)
+|+. ....|++++.+|...|||++..+.+..+..+. ..+..+.|+|++ +.+++++.| -.|.+||+|.-....+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 4554 34578888899999999999988776665443 357899999984 456666544 3799999986667778
Q ss_pred ccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v~ 148 (150)
.+.+ |...|.++. .+ |.+++++++.|+.|..|+..+++.+..+....+ -+..+.|+|..- .++.++.++.|.
T Consensus 248 ~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 248 ILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheecccee
Confidence 8888 999999987 44 558999999999999999999999999987666 499999999665 888888888764
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=1.8e-14 Score=94.64 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=108.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC--------C--------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR--------K--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
+.|+|+|+.+++|+.+|.+.+|... + ....+.+.+|...+..++|+|++.++++++.|..+++|
T Consensus 71 vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 71 VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 4799999999999999999999876 2 11335567888999999999999999999999999999
Q ss_pred EcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc--------C-----------CC--
Q 031924 65 SWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA--------E-----------HS-- 122 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~-----------~~-- 122 (150)
|+. .++....+.. |..-+.-.+ .|-++++++-+.|...+.+.+...+.++... . |.
T Consensus 151 Dv~-~G~l~~~~~d-h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 151 DVH-AGQLLAILDD-HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred Eec-cceeEeeccc-cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 996 4577777777 887777766 7778888888888877777665433222211 1 11
Q ss_pred --CcceeEEEEcCCccEEEecccccc
Q 031924 123 --EYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 123 --~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+ ..+++|+|||.++++.+....
T Consensus 229 lksF-FrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 229 LKSF-FRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred hhhh-hhhcccCCCCcEEEcccceee
Confidence 12 556899999999998765443
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=9.7e-14 Score=92.47 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=105.0
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc---ccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG---YFKDC 72 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~---~~~~~ 72 (150)
|+++|- ..+|++++.|++.+|||++.-. +......|...|.+..|||.+..|++-+.|..|+|||.. .....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 467774 5588899999999999998632 234455788899999999998779999999999999973 22223
Q ss_pred ccccc-----cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeE-EEEcCCccEEEecc-ccc
Q 031924 73 SDRFV-----GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LGIASVLCFINSGF-LSL 145 (150)
Q Consensus 73 ~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~-~~~ 145 (150)
..++. +.|-.+..+.+.|+..++++|..-..|-++|...++.+..+.......|.+ ..|+|-+..+++|+ .+|
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 33332 112334556678899999999999999999998888666653333223444 47999888555554 455
Q ss_pred cc
Q 031924 146 NV 147 (150)
Q Consensus 146 ~v 147 (150)
.|
T Consensus 488 ki 489 (498)
T KOG4328|consen 488 KI 489 (498)
T ss_pred eE
Confidence 44
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=4.4e-13 Score=83.14 Aligned_cols=110 Identities=9% Similarity=0.132 Sum_probs=80.2
Q ss_pred CeeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+++.+++. ..++.+.+||++ ++.+..+. ....+.+.|+|+|+++++++. .|.+.+||.+. .+.+.+
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999987655 356799999997 44555543 467789999999999998864 47799999863 355554
Q ss_pred cccccccceeEee-ecCCCEEEEecC------CCcEEEEeccCCeeeeec
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 118 (150)
+. |.. ++.+. +|+|++++++.. |+.+++|+.. |+.+...
T Consensus 141 ~~--~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 344 34444 999999998874 6788999984 5555443
No 180
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=1.1e-13 Score=97.18 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=97.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc---CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|+..|..+++++++.|..|+|||++.++..+.+++ |++..-.+...|.|.++++.+.|+++.+||+. .++++.++.
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~-sgEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV-SGECVAQMT 680 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec-cchhhhhhc
Confidence 56788999999999999999999999998877764 56778889999999999999999999999985 679999999
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
+ |...|+.+. .++-++|++.+.||.|.+|.+.
T Consensus 681 G-HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 G-HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred C-cchheeeeeecccchhheeecCCceEEEEECc
Confidence 9 999999988 7888999999999999999874
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.5e-13 Score=82.36 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=107.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC---------C-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+|+|.+++++++..+|.|.++.+.. + ..+...+.|++++..++|. ..+|++++ ||.|+-|.+++..+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 5789999999999999999998754 1 2344557899999999998 34566664 49999998764322
Q ss_pred ccc-------ccccccc-----cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 72 CSD-------RFVGLSP-----NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 72 ~~~-------~~~~~~~-----~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
... ..+. +. ..|+++. .|..+-++.++.|+.++-||+++++..+.+.+|.++ +.++.-......+
T Consensus 94 s~~~K~lwe~~~P~-~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~~~qi 171 (325)
T KOG0649|consen 94 SLATKRLWEVKIPM-QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNANGQI 171 (325)
T ss_pred hccchhhhhhcCcc-ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeecccCcce
Confidence 110 1111 21 2366776 666666666679999999999999999999999998 9999986666778
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
.+|+-+|.++
T Consensus 172 lsG~EDGtvR 181 (325)
T KOG0649|consen 172 LSGAEDGTVR 181 (325)
T ss_pred eecCCCccEE
Confidence 8999998875
No 182
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=3.7e-13 Score=97.04 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=118.1
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
++++.-++++|+.-+.|.+|+....+....+.+|++.+..+.++.||+++++.+.|.++++|++++........-+ |+.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4566778999999999999998854444468899999999999999999999999999999999754333335557 888
Q ss_pred ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++-.++ .++ .+++++.|.+.++|+. .+..+..+..|....+..++..++...+.|++.++.+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 888777 444 9999999999999976 45666688888877899999999999999999988764
No 183
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.52 E-value=2.3e-13 Score=94.74 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=114.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------- 69 (150)
++|+|.|++|++.+.|.+-|+|-.-..+ .+.+-+-|...++|+++-+....|++|.....+|+|+....
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHH
Confidence 5799999999999999999998754222 23344567778999999987777899999999999986321
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 031924 70 --------------------------------------------------------------------KDCSDRFVGLSP 81 (150)
Q Consensus 70 --------------------------------------------------------------------~~~~~~~~~~~~ 81 (150)
=..++++-| |.
T Consensus 447 i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG-HG 525 (764)
T KOG1063|consen 447 ICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG-HG 525 (764)
T ss_pred HhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc-Cc
Confidence 011223446 77
Q ss_pred cceeEee-ecCCCEEEEecCCC-----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENG-----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|.+++ +|+++++++++... .|++|+..+-...+.+..|.- .|+.++|||||++|++.|.+-.+
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEECCCCcEEEEeecCceE
Confidence 8899988 99999999998544 589999988877788888876 69999999999999999987654
No 184
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5.1e-14 Score=94.09 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=114.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-.|..+|+|.+|... ....+..+.. |.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-HR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-cC
Confidence 456666678888999999999999999988888788899999999999889999999999999975 4466666778 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
++|.++. .++|+++++.+.|..++|||++.-..+.++.. ..+...+++|..|.+.++-+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCC
Confidence 9999998 89999999999999999999987765555433 236788899988876665443
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=7.8e-13 Score=85.43 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=94.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeee--ccCC-CcEEEEEEEeCCCEEEeec----CCCeEEEEEccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSE-EELTSVVLMKNGRKVVCGS----QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
....+.+++.||+|++||++......++ ..+. .+..+++.+-.++.+++|+ .+-.+.+||++...+.+..+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 3557888999999999999986544332 3333 3677777766788888886 4678999999877664555544
Q ss_pred ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe----eeeeccCCCCcceeEEEEcCCc
Q 031924 79 LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 79 ~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.|.+-|+++. .| +.++|++|+.||-|.++|+.... ++.++ .+.. +|.++.|..++
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~s-SI~~igw~~~~ 223 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGS-SIHLIGWLSKK 223 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccc-eeeeeeeecCC
Confidence 4999999988 44 67899999999999999986422 33444 4444 59999999887
No 186
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=1.2e-13 Score=92.33 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=116.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeec----------------------------c----------CCCcEEEE
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----------------------------F----------SEEELTSV 43 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~----------~~~~v~~~ 43 (150)
.|+.+|+.++.++..|+|..+|..+++....+. . ....+..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 467789999999999999999998875442211 0 11345567
Q ss_pred EEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC
Q 031924 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (150)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 122 (150)
.|-|..-.|++++..|.++.-|+. .++.+..+.. ....+..+. +|-+..+-.|..+|+|.+|.....+++..+.-|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeec-hhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 777877788888899999988884 5677777766 566777777 7878899999999999999999888888888998
Q ss_pred CcceeEEEEcCCccEEEecccccccc
Q 031924 123 EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 123 ~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ +|.++++.++|+|+||.+.+..++
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred C-CcceEEECCCCcEEeeccccccee
Confidence 9 799999999999999999987765
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.5e-13 Score=90.94 Aligned_cols=137 Identities=13% Similarity=0.069 Sum_probs=85.3
Q ss_pred CeeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~ 76 (150)
..|+||++.|+..+.+ ..|.+||+.+++... +....+....++|+|||+.|+.+ +.+|...+|.+...+....++
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 3699999999887643 479999998875422 12222334468999999988775 467877766543223334445
Q ss_pred ccccccceeEee-ecCCCEEEEec-CCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. +...+.... +|+|+.++..+ .++..++|++... .....+ .+.. ....|+|||++++..+.
T Consensus 288 t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 288 TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING 352 (429)
T ss_pred cc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC
Confidence 54 444444444 88998776554 5678888876432 122222 2222 24578888888776543
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=6.7e-12 Score=85.01 Aligned_cols=141 Identities=22% Similarity=0.351 Sum_probs=111.6
Q ss_pred ecCcc-eEEEEcC-CCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccccc
Q 031924 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 4 ~~~~~-~l~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++++. .++..+. |+.+.+|+... ......+..|...+..++|+|++..++.++. |+.+++|+... ......+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 45665 4444444 99999999998 6677888899999999999999998888885 99999999863 466677777
Q ss_pred cccceeEee-ecCCC-EEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. .+++. .+++++.|+.+++||...+..+. .+..|... . ...|+|++.++++++.++.+.
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeECCCCCEEEEecCCCcEE
Confidence 888898888 67776 55555899999999988777777 57677663 3 338999998888888877664
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=7.3e-13 Score=84.98 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=109.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-C--eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~ 75 (150)
|+|+|..+.|++++.|..-++|.... + ++.-.+..+....+++.|+|.++.|++|+....|.+|-++.... ..+.
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 57999999999999999999999843 3 24445567788999999999999999999999999998753221 1222
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEecc-----C-------------CeeeeeccCCCCcceeEEEEcCCcc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
++-.+...|+++. .+++-++++|+.|+..|++... . ++.+..+....+ -+..+.|+|+|.
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSPSGN 219 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCCCCC
Confidence 2221677888988 7888899999999999998642 1 112222222334 399999999999
Q ss_pred EEEecccccccc
Q 031924 137 FINSGFLSLNVN 148 (150)
Q Consensus 137 ~l~s~~~~~~v~ 148 (150)
.|+-.+.+..|+
T Consensus 220 ~lawv~Hds~v~ 231 (361)
T KOG1523|consen 220 RLAWVGHDSTVS 231 (361)
T ss_pred EeeEecCCCceE
Confidence 998777665543
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.3e-12 Score=90.29 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=92.8
Q ss_pred CeeecCcceEEEEc-CCCeEEEE--EcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.+|+||++.|+.++ .+|.+.|| |+.+++ ...+..+...+....|+|||+.++.. ..++..++|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 36999999888764 67766555 665554 34455566678889999999987654 467888999875433333333
Q ss_pred ccccccceeEe-eecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. +.. ... .+|+|+.++..+.++ +..||+.+++........ ....+.|+|||++++.++..+..
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 3 332 223 388999998887765 556999877654332222 24567899999999988766544
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=8.6e-12 Score=83.50 Aligned_cols=140 Identities=9% Similarity=-0.004 Sum_probs=90.9
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcC-CCee--eeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccc---
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC--- 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~--- 72 (150)
|+++|++++|++++ .++.|.+|++. +++. ..... ..+....++++|+++++++++. ++.+.+|++...+..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 46899999887764 58899999987 3432 22222 2335678999999999887764 789999998643322
Q ss_pred ccccccccccceeEe-eecCCCEEEE-ecCCCcEEEEeccCCeeeee-----ccCCCCcceeEEEEcCCccEEEeccc
Q 031924 73 SDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQP-----IAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...+.+ ... ...+ .+|+++++++ ...++.|.+||+.+...+.. .....+.....++|+|+|+++++...
T Consensus 119 ~~~~~~-~~~-~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 119 IQIIEG-LEG-CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eeeccC-CCc-ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 222222 222 3334 3888887755 44579999999976332211 11111224678999999998876654
No 192
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.48 E-value=1.3e-12 Score=88.41 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=107.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|.+ .++.|...|...+.|.++...+..... .+++++++|+|+|.+|+.|+.|+.|++|.+...++...+..--+.
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 688998 999999999999999999655544444 889999999999999999999999999999777665554432145
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec------------------cCCCCcceeEEEEcCCccEEEecc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI------------------AEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+|+.+. +++++++.+-+.|-.|..|.....+..... ..+.. .|..++-+.+.+.+|+|.
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t-~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT-DINAVARSHCEKLLASGD 570 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc-hHHHhhhhhhhhhhhccc
Confidence 7788888 889999999999999999954322211111 11212 355566666777777776
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
.-+.|.
T Consensus 571 d~g~v~ 576 (626)
T KOG2106|consen 571 DFGKVH 576 (626)
T ss_pred cCceEE
Confidence 665553
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.4e-12 Score=85.53 Aligned_cols=130 Identities=11% Similarity=0.140 Sum_probs=103.9
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
.|-+. ...|+++..-+++++||.+.++ ++..+...+.+++++...|+++++++|...|.+..||.+...-....+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45554 6789999999999999998764 56777777889999999999999999999999999999754333444777
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
..+.+..+. .+.++++++++-|..+|++|+++.+.+...-- .. .++++.+.++
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks-~lt~il~~~~ 342 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KS-RLTFILLRDD 342 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hc-cccEEEecCC
Confidence 788888887 78889999999999999999998776654421 22 3666666554
No 194
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.7e-13 Score=92.09 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=118.6
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.|+-.|.+|++... ...|.|+++...+.+.-+....+.+.++.|+|...+|++++.. .|++||+. .+..++++.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-kqelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-KQELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehh-HHHHHHHHh
Confidence 578899999998754 4678899998876665565667889999999999999888664 79999995 345566665
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ...++..+. ++.|..|+.++.|+.+..+|+.- .++.+.+..|+. .+++++|++.-.++|+|+.++.+-
T Consensus 605 t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 605 T-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred c-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEE
Confidence 5 567788888 89999999999999999999863 568888888888 599999999999999999987764
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.7e-12 Score=83.04 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=108.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------Ceeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
+.|+.++++|++|+.|.++++|.++. .+++.... .|...|.|++|...++++++|..+++|.+.|+++. +.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc-eee
Confidence 46889999999999999999999864 23443333 45578999999999999999999999999999643 444
Q ss_pred ccccc-ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeee-ccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 74 DRFVG-LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQP-IAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 74 ~~~~~-~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~-~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
..+.. -....|..+. +|..+.+++.+.++.|.+||.+..+ .... ..+........+.|+|.. .+|++.+..+-++
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44431 0233788887 8888999999999999999997654 2211 122222247788999954 6777777766555
Q ss_pred C
Q 031924 149 P 149 (150)
Q Consensus 149 ~ 149 (150)
.
T Consensus 221 ~ 221 (609)
T KOG4227|consen 221 V 221 (609)
T ss_pred c
Confidence 3
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4.3e-12 Score=92.49 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=99.2
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccc--cccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~ 77 (150)
.|.....+|++++.-..|+|||..+......+.. .+..++++.-+. .|+.+++|..||.+++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666666677776788999999998877666543 344566665543 379999999999999999864322 344445
Q ss_pred cccccc--eeEee-ecCCC-EEEEecCCCcEEEEeccCCe--eeeeccCCCCc--ceeEEEEcCCccEEEeccc
Q 031924 78 GLSPNS--VDALL-KLDED-RVITGSENGLISLVGILPNR--IIQPIAEHSEY--PIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~~~~~--v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~ 143 (150)
. |... |..+. .+.|- .+++|+.||.|++||++... ....+..|-++ ..+++..+++...+|+|+.
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 5 6555 55544 44343 69999999999999998632 22222233322 2899999999999999985
No 197
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=8.5e-12 Score=86.20 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=88.9
Q ss_pred eeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+||++.|+..+. ...|.+||+.+++... +....+......|+|||+.|+ +.+.++...+|.++..+....++.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 69999999887653 3469999999886543 333345567899999999886 567788877776543333344454
Q ss_pred cccccceeEe-eecCCCEEEEecC-CCcEEEEe--ccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDAL-LKLDEDRVITGSE-NGLISLVG--ILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-dg~i~~~d--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. +....... .+++|+.++..+. ++...+|. +.+++. ..+..+... .....|+|||++|+..+..
T Consensus 281 ~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~-~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 281 Q-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY-NTSPRISPDGKLLAYISRV 348 (427)
T ss_pred C-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC-cCceEECCCCCEEEEEEcc
Confidence 3 33333333 4889998876554 45556664 444433 222222222 4467899999999866543
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.44 E-value=1.6e-11 Score=90.54 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=99.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-------
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------- 70 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~------- 70 (150)
+++.++++|+.||+|++|+...- +...+.......+.++...+.+..+++++.||.|++.+++...
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~ 1138 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT 1138 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceee
Confidence 45589999999999999998752 1222333356789999999999999999999999999875410
Q ss_pred -----------------------cc----------------------c--cccccccccceeEee-ecCCCEEEEecCCC
Q 031924 71 -----------------------DC----------------------S--DRFVGLSPNSVDALL-KLDEDRVITGSENG 102 (150)
Q Consensus 71 -----------------------~~----------------------~--~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg 102 (150)
+. . .+... ..+.|++++ ++.+++++.|+..|
T Consensus 1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCc
Confidence 00 0 00111 234577777 88888999999999
Q ss_pred cEEEEeccCCeeeeeccCCCCcceeEEEEcCC---ccEEEeccc
Q 031924 103 LISLVGILPNRIIQPIAEHSEYPIESLGIASV---LCFINSGFL 143 (150)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~ 143 (150)
.+.+||++-+.++..+......+++.+..+|- ....++++.
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 99999999888877764322346888888763 346666555
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-12 Score=85.80 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred EEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.+++|+.+|..+++|+.||++|+|++... ..+..... |...|.++. ++++++|++-+.| ..++|+..++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 68999999999999999999999997544 33344445 788899998 9999999999999 99999987662111110
Q ss_pred -----------------------------CC------------C------------CcceeEEEEcCCccEEEecccccc
Q 031924 120 -----------------------------EH------------S------------EYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 120 -----------------------------~~------------~------------~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+ . ...|++++++++|+++|.|+.++.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 00 0 114899999999999999999987
Q ss_pred cc
Q 031924 147 VN 148 (150)
Q Consensus 147 v~ 148 (150)
|-
T Consensus 305 Va 306 (398)
T KOG0771|consen 305 VA 306 (398)
T ss_pred EE
Confidence 73
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.6e-11 Score=80.29 Aligned_cols=139 Identities=8% Similarity=0.049 Sum_probs=92.6
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|++|+..+++++ .|..|.|||..++..+.......+.++-+.|+|||.+|++++.|+..++|+.... ....+...
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~-wt~erw~l- 278 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS-WTKERWIL- 278 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc-ceecceec-
Confidence 57999999999988 6889999999998766444445677889999999999999999999999965322 22222222
Q ss_pred cccceeEee-ecCCCEEEEec-CCCcEEEEeccCC----------eeeee---c-----cCC----CCcceeEEEEcCCc
Q 031924 80 SPNSVDALL-KLDEDRVITGS-ENGLISLVGILPN----------RIIQP---I-----AEH----SEYPIESLGIASVL 135 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~----------~~~~~---~-----~~~----~~~~i~~~~~~~~~ 135 (150)
..+.|...+ +|+|+.|+... ....++-...... +.... + ... .+ ++.+++|+|.|
T Consensus 279 gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg-eaq~lawDpsG 357 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG-EAQCLAWDPSG 357 (445)
T ss_pred cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC-ccceeeECCCC
Confidence 244666544 89888665443 3333332221110 00000 0 011 13 58899999999
Q ss_pred cEEEecc
Q 031924 136 CFINSGF 142 (150)
Q Consensus 136 ~~l~s~~ 142 (150)
.+||+-.
T Consensus 358 eyLav~f 364 (445)
T KOG2139|consen 358 EYLAVIF 364 (445)
T ss_pred CEEEEEE
Confidence 9999754
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=4.4e-11 Score=80.10 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=90.7
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC-Ce---eeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NT---VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~ 74 (150)
|+|+|+++++++++ .++.|.+|+++. +. ....+. .......++++|+++++++++ .++.|.+||+...+....
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 46899999888876 588999999974 22 222222 223467788999999886555 569999999964332211
Q ss_pred ------ccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccC--Ce--eeeeccCCC------CcceeEEEEcCCcc
Q 031924 75 ------RFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILP--NR--IIQPIAEHS------EYPIESLGIASVLC 136 (150)
Q Consensus 75 ------~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~--~~--~~~~~~~~~------~~~i~~~~~~~~~~ 136 (150)
.... . .....+. +++++++++... ++.|.+|++.. ++ .++.+...+ .. ...+.++|+++
T Consensus 164 ~~~~~~~~~~-g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTTVE-G-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW-AADIHITPDGR 240 (330)
T ss_pred cCCCceecCC-C-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc-ceeEEECCCCC
Confidence 1111 1 2233344 889998887776 89999999973 22 333332211 11 33688999999
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
++.++..
T Consensus 241 ~lyv~~~ 247 (330)
T PRK11028 241 HLYACDR 247 (330)
T ss_pred EEEEecC
Confidence 8888643
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.5e-11 Score=85.16 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=91.1
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+ .+..|.+||+.+++.. .+....+.+...+|+|||+.|+ +.+.++. |.+||+. +....+
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--~~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR--SGTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC--CCceEE
Confidence 6899999888765 3568999999888653 3444556677899999998875 5555655 6666764 233344
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +|+|+.++..+. +| .|+++|+..++. +.+..+.. .+....|+|||+.|+..+.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~-~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG-RYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC-cccCeEECCCCCEEEEEEc
Confidence 544 443333333 889998877653 33 688888866544 33333334 3667899999999886543
No 203
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.43 E-value=3e-12 Score=88.66 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=103.5
Q ss_pred cceEEEEcCCCeEEEEEcCCCee------eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--ccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVG 78 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~ 78 (150)
...|+.+.+||.|.++|.+.... +.....|...|.++.|.|....|++++.|.++++||+... ++... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc
Confidence 45788899999999999876432 2455678999999999997788999999999999999643 55544 778
Q ss_pred ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe--------------------ee-------eeccCCCCcceeE-
Q 031924 79 LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR--------------------II-------QPIAEHSEYPIES- 128 (150)
Q Consensus 79 ~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~--------------------~~-------~~~~~~~~~~i~~- 128 (150)
|...+.+++ .+ +...|++|+.||.|.+||++-.. .. ....++.. .|.+
T Consensus 143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ss 220 (720)
T KOG0321|consen 143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSS 220 (720)
T ss_pred -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeee
Confidence 999999887 44 66789999999999999986321 00 00112222 2555
Q ss_pred --EEEcCCccEEEeccc-ccccc
Q 031924 129 --LGIASVLCFINSGFL-SLNVN 148 (150)
Q Consensus 129 --~~~~~~~~~l~s~~~-~~~v~ 148 (150)
+.+..|...||+++. ++.|.
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred eEEEEEeccceeeeccCCCcceE
Confidence 666788888888887 65554
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.42 E-value=3.6e-11 Score=81.42 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=90.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
.|+||++++++++.||.|.++|+.+++.+.++..- ....++++++||+++++++ .++.+.++|.++. +.+++++..
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~ 120 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGG 120 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--E
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccc
Confidence 57899999999999999999999999988887654 3568899999999998776 5799999997643 555555420
Q ss_pred -----cccceeEee-ecCCCEEE-EecCCCcEEEEeccCCeee--eeccCCCCcceeEEEEcCCccEEEecc
Q 031924 80 -----SPNSVDALL-KLDEDRVI-TGSENGLISLVGILPNRII--QPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 80 -----~~~~v~~~~-~~~~~~l~-~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+..+..+. ++....++ +--..+.|.+.|....+.+ ..+. ... ......|+|+++++..+.
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~-~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGR-FPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccc-cccccccCcccceeeecc
Confidence 123455665 66666444 4455588888887654433 2332 223 377899999999877654
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.8e-11 Score=77.74 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=97.8
Q ss_pred ceEEEEcCCCeEEEEEcCC-CeeeeeeccCC--CcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc-ccccccccccc
Q 031924 8 MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSE--EELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~-~~~~~~~~~~~ 82 (150)
..|++. ..+.|.+|.... -+.++.++... ..+.+++-..+...|+.-+ .-|.|++-|+..... ....+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 455555 556888888774 33444443322 2233333333445555544 559999999864322 2345566 999
Q ss_pred ceeEee-ecCCCEEEEecCCCc-EEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEecccccccc
Q 031924 83 SVDALL-KLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.|.|+. +.+|.++++++..|+ ||+||..++..++.+....+ ..|.+++|||++.+||..|.-+.+.
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 999998 889999999999995 89999999999888854332 3599999999999999999877654
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.2e-12 Score=92.51 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=102.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCc--EEEEEEEeCCCE-EEeecCCCeEEEEEccccc-cccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEE--LTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK-DCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~-~~~~~~~~ 78 (150)
.|+.+++|..||.|++||.+... .+.....|... |..+.+.+.|-. |++|+.||.|++||++... .....+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 47899999999999999987643 34555666665 899999887654 9999999999999998521 11111222
Q ss_pred cc---ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC------CcceeEEEEcCCccEEEecccccccc
Q 031924 79 LS---PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~---~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
| ....+++. +.....+++|+. +.|++|++. ++.+..+..++ .-++.+++|+|---.+|.|+.+..|+
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2 12478887 777889999888 999999985 44333333222 12588999999999999998888776
Q ss_pred C
Q 031924 149 P 149 (150)
Q Consensus 149 ~ 149 (150)
.
T Consensus 1377 i 1377 (1387)
T KOG1517|consen 1377 I 1377 (1387)
T ss_pred E
Confidence 4
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=3.9e-13 Score=95.65 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=110.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+..+.++++++.|..++||.+++..++....+|++.++.++.+.+..++++++.|..|++|.+. .+..+..+.+ |+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC-CCchHHHHhc-cc
Confidence 467789999999999999999999999999999999999999999999999999999999999986 4577888889 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeee---eeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.|+++. +|.. +.+.||++++||.+-...+ ......++..+-++.|...+.-++||+.++.
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 9999998 5543 6788999999998721111 1111111223666677777777777776553
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.5e-11 Score=80.33 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=87.5
Q ss_pred eeec--CcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCe-EEEEEccccccccccc
Q 031924 2 TFAA--DAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~--~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~ 76 (150)
+++| ++.+++.-+ ..|.|.+||..+-+....+..|++.+.+++|+++|.+|++++..|+ ||+|.+. .++.+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-~G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-EGQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-CccEeeee
Confidence 4444 345777532 5789999999998888899999999999999999999999999986 6799985 45666666
Q ss_pred c-cccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 77 V-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 77 ~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
. |.....|.++. ++++++|++.+..++|+++.+..
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 5 32345566777 88999999999999999998753
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.8e-11 Score=87.24 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=104.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc---cccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~ 74 (150)
.+++.+++.+.. .+..+.+|..+++... ..-..|.-.+++.+++|++++++++..||.|.+|.--. ......
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 455666666666 3447888888875421 11123444579999999999999999999999995311 113344
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+.- |...|.++. +++|.+|++|+..|.+-+|.+.+++ .+-++.-.. +|..+.++||+.+.+....+..+
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC-eeEEEEEcCCCCeEEEEecCceE
Confidence 5566 888999998 8999999999999999999998877 344444445 79999999999988776666544
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.2e-11 Score=84.22 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=89.2
Q ss_pred eeecCcceEEEE-cCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~ 77 (150)
.|+||++.|+.. +.++ .|.+||+++++... +......+....|+|||+.|+..+. ++...+|.+...+....++.
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 699999988865 3344 58899998876543 3444456788999999998876654 45555664432222233333
Q ss_pred cccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
. ......... +|+|+.++..+.+ ..+++||+.+++.. .+... . ......|+|||+.|+..+.++.
T Consensus 328 ~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 328 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred c-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCC
Confidence 2 222233333 8899988776543 35888898777643 33221 1 2456789999999988776543
No 211
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=2.9e-11 Score=77.04 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=99.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccc-c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~-~ 76 (150)
+.|++.+..++++..+|.+.+-+....... +..+.|+-+.....|+.. .+.+.+|+.|+.+..||++..++.+.+ .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 357888888999989999986554444333 477889888899999864 467889999999999999855544443 3
Q ss_pred ccccccceeEee--ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCC
Q 031924 77 VGLSPNSVDALL--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 77 ~~~~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
+- |...|.++. .|.+..+++|+.|-.|++||.+. ++++..-.. .+ +|.++.++|.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~G-GVWRi~~~p~ 264 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GG-GVWRIKHHPE 264 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-cc-ceEEEEecch
Confidence 44 788888887 45778999999999999999985 555554422 24 5888988884
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.39 E-value=2.1e-11 Score=77.68 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=77.0
Q ss_pred eeecCcc----eEEEEcCCCeEEEEEcCCCe--ee-------eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAM----KLLGTSGDGTLSVCNLRKNT--VQ-------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~----~l~~~~~d~~i~i~d~~~~~--~~-------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~ 67 (150)
-|.|+.+ -+++.+.| .+|+|.+...+ .. .+-..+..+++++.|+. +-+++.+.+-|.+..+||++
T Consensus 103 ~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 4677653 33344355 89999987422 11 11123456899999986 57788999999999999997
Q ss_pred cc--cccccccccccccceeEeeecC--CCEEEEecCCCcEEEEeccC
Q 031924 68 YF--KDCSDRFVGLSPNSVDALLKLD--EDRVITGSENGLISLVGILP 111 (150)
Q Consensus 68 ~~--~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~~~d~~~ 111 (150)
.. +....++.. |...|..+.... -+.+++.+.||.+|+||++.
T Consensus 182 ~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 182 TGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred eccccceeeEEEe-cCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 42 223455566 999999888443 46899999999999999874
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=6.2e-12 Score=85.97 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=103.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 87 (150)
..++.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.- .+....++.. ...+|.|.
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr--sGMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR--SGMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec--cchHHHHHhh-cCceeEEE
Confidence 4688888999999987 446677778899999999999999999999999999999985 3555555555 67889998
Q ss_pred e-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 88 L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 88 ~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
. .|+.+.++.+. .+.+.+=.+.....+-.+++|.+. |.++.|++...++++|+-+..
T Consensus 152 ~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGi-iL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGL-VLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred EECCCCCceEEec-CCeEEEeecccccceeEEeccCcE-EEEeecCccccceeecCCcee
Confidence 8 66655444432 345555555555555567799995 999999999999999998754
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.2e-11 Score=85.08 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=101.0
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeec------cCCC-----cEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
.++...+|++|+.+|.|..||.+.......+. .+.+ .|+++.|+.+|-.+++|+.+|.+.+||++....
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 45666788889899999999998865443332 2222 499999999999999999999999999986544
Q ss_pred cccccccccccceeEeee-c-C-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 72 CSDRFVGLSPNSVDALLK-L-D-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~~-~-~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
....-.+ ..-+|..+.. . + ++.+++ .....+++||..+++....+..- . +++.+++-|++-.+.++--+..
T Consensus 263 l~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 263 LLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred eeecccC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCc
Confidence 4333333 4555666652 2 2 344544 45678999999999988777433 3 4889999998888877765543
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=4.6e-11 Score=83.83 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=101.5
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCee--e----eeeccCCCcEEEEEEEeCC--CEEEeecCCCeEEEEEcccc---
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTV--Q----TRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYF--- 69 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~~~~~~--- 69 (150)
.|+| +..+++.|+.+|.|.+||++.+.. . .....|.+++..+.|..+. .-|++++.||.|..|+++..
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 5677 466788888999999999988653 2 2334678899999998753 44999999999999987532
Q ss_pred -----------------------------------------c------------------ccccccccccccceeEee-e
Q 031924 70 -----------------------------------------K------------------DCSDRFVGLSPNSVDALL-K 89 (150)
Q Consensus 70 -----------------------------------------~------------------~~~~~~~~~~~~~v~~~~-~ 89 (150)
| +....+.. |...+.++. +
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 0 00112223 556666665 4
Q ss_pred cCC-CEEEEecCCCcEEEEecc-CCeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 90 LDE-DRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 90 ~~~-~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
|=. ..+.+++ |..+++|... ...++..+..+.+ .+.+++|||.- ..++++..+|+++
T Consensus 408 PF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 408 PFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred CCccceeeeec-cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCcee
Confidence 422 3444544 9999999877 5556666666666 49999999954 6788888888875
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-10 Score=80.81 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=86.2
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~ 75 (150)
+|+|||+.|+..+ .+..+.+|++.+++... +....+......|+|||+.|+.. +.+| .|++||+.. ++. ..
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~-~~ 281 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQ 281 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EE
Confidence 6999999888653 35679999998875432 22233344568999999988754 4455 588888752 233 33
Q ss_pred cccccccceeEee-ecCCCEEEEecCC-Cc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +...+.... +|+|+.|+..+.+ +. |+.+|+.+++.. .+..+.. ......|+|||++++..+.
T Consensus 282 lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 282 VTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEc
Confidence 333 333344444 8899988776653 44 445566655443 3333333 3567899999999887554
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4e-12 Score=87.07 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=92.1
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-ccccccceeEee-e--cCCCEEEEecCCCcEEE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDALL-K--LDEDRVITGSENGLISL 106 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~-~--~~~~~l~~~~~dg~i~~ 106 (150)
..+.+|.+-|+++.|+.+|.+|++|+.|-.+.|||.-.. +....+ ++ |...|.+.. - .+++.+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc-ceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 567899999999999999999999999999999998533 555555 46 998898876 2 36678999999999999
Q ss_pred EeccC----------CeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 107 VGILP----------NRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 107 ~d~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
+|+.. ......+.-|.. .|..++..|++ ..+.+++-+|.+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred EecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCccee
Confidence 99974 123334455666 58889999988 7888999888764
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.6e-11 Score=82.18 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=86.4
Q ss_pred eeecCcceEEE-EcCCCeEEEEE--cCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLG-TSGDGTLSVCN--LRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~~i~i~d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+||++.|+. .+.++...+|. ...++ ...+..+........|+|||+.++..+ .++...+|.+...+.....+.
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 69999988874 56777766665 44443 444444444556788999999887554 456777776542222222222
Q ss_pred cccccce-eEeeecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSV-DALLKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v-~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. ..... ....+|+|+.++..+.++ .|.+||+.+++... +... . ......|+|||+.|+..+..
T Consensus 325 ~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 325 F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEec
Confidence 2 11111 223488999988766554 69999998776543 3222 2 24678999999988876643
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.3e-11 Score=77.92 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=99.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccc---c----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK---D---- 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~---~---- 71 (150)
++|++.-..++++..|..|++||-.. +....++. ....++|++|-|. +..|++|+..| |.+|...... +
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccccc
Confidence 46777666778888999999999776 34434443 3457999999997 55677777665 7789764221 1
Q ss_pred ------cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 ------CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ------~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+.+.++ | ..|+++. .++|..+++++. |..|++||..++..+.......+ .++-+.|||||.+|..+.-
T Consensus 182 ~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 182 MSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ccccchhheeCCC-C-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecc
Confidence 1112234 3 6788887 888988888875 67999999988776554433344 5888999999998887765
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
+.
T Consensus 259 da 260 (445)
T KOG2139|consen 259 DA 260 (445)
T ss_pred cc
Confidence 54
No 220
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5e-11 Score=76.45 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-c--ccccccccccccceeEee--ec-CCCEEEEecCCCcEEEE
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-K--DCSDRFVGLSPNSVDALL--KL-DEDRVITGSENGLISLV 107 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~--~~~~~~~~~~~~~v~~~~--~~-~~~~l~~~~~dg~i~~~ 107 (150)
.+|.+-++++.|.+.|+.+++++.|++++|||.+.. + .+....+. |.+.|-.+. +| =|+.+++++.|+++.+|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeee
Confidence 367788999999999999999999999999996422 1 34455667 888888776 33 58999999999999999
Q ss_pred eccCC-------e--eeeeccCCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 108 GILPN-------R--IIQPIAEHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 108 d~~~~-------~--~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
..... + ...++..... .|+.+.|.| -|-.+|+++.+|.++
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred eecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEE
Confidence 76321 1 2233434444 599999998 477899999998775
No 221
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=5.5e-12 Score=86.11 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=95.4
Q ss_pred eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc---c----cccccccccccccceeEee-ecCCCEEEEecCCCc
Q 031924 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---F----KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGL 103 (150)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~----~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~ 103 (150)
.+..|.+.++.+.|.+....|++++.||++.+|++.. . -+.+.+|.+ |..+|.|++ +.++..+++|+.||.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 4556777889999999999999999999999999821 1 134567788 999999998 889999999999999
Q ss_pred EEEEeccCC----------eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 104 ISLVGILPN----------RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 104 i~~~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|+.|++... .....+.+|.+ .+..+++|+....|++++.++.|.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEe
Confidence 999955321 23455678888 4999999999999999999998753
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.4e-10 Score=80.38 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=85.3
Q ss_pred eeecCcceEEE-EcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++ .|.+||+.+++.. .+..+.......+|+|||++++..+ .+|. +.++++.. ....+
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~ 330 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAER 330 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEE
Confidence 69999987764 44444 6999999887643 3444444556789999999887665 4555 44555432 22233
Q ss_pred cccccccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +|+|+.++..+.++ .|.+||+.+++.. .+.. .. ......|+|||++++..+.
T Consensus 331 lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~-~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 331 LTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GS-LDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CC-CCCCceECCCCCEEEEEEe
Confidence 322 222222333 88999888765433 6899999777654 3432 22 2456799999998776554
No 223
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.6e-10 Score=78.37 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=111.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
+...++-|...|.|-+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.. ..+.+..+.. .+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeecc-CCCc
Confidence 44567788899999999999998876665 678899999999998899999999999999985 4577777777 6777
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC-----ccEEEecc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV-----LCFINSGF 142 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~~ 142 (150)
+.+++ .+++..+++++ ++|++||+.+++.+..+.+|.+ +|+++.|--+ |.++.+..
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeecc
Confidence 77777 89999998876 5899999999999999999988 7999999876 66666543
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.31 E-value=1e-11 Score=87.01 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=78.8
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.|..++|-|||..++.+. +..+.+||.. .+...+++++ |.+.|.+++ +.+|+.+++|+.|..|.+|+.+-...++.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~n-dG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTS-DGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCC-Cccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 789999999999988774 4579999985 5788999999 999999999 88999999999999999998754333222
Q ss_pred ccCCCCcceeEEEEcCCccEEEecccc
Q 031924 118 IAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.|.+ .|.++.|+|-...|++|+++
T Consensus 91 --SH~D-~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 91 --SHND-AIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred --ccCC-eeeEeecCchHHHhhhcchh
Confidence 3445 46666666666666666654
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.31 E-value=8.1e-13 Score=94.08 Aligned_cols=103 Identities=13% Similarity=0.233 Sum_probs=93.2
Q ss_pred eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
++.+.+|...|.|+.|...|.++++|+.|..++||.+. ...+.....| |...++.+. +.++-++++++.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEe
Confidence 35667899999999999999999999999999999974 5688899999 999999988 66777889999999999999
Q ss_pred ccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 109 ILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
+..+.++..+.+|.+ .|++++|+|--
T Consensus 261 l~~~~pvsvLrghtg-avtaiafsP~~ 286 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTG-AVTAIAFSPRA 286 (1113)
T ss_pred cCCCchHHHHhcccc-ceeeeccCccc
Confidence 999999999999999 59999999854
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.8e-10 Score=82.26 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=103.2
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC--Ce--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK--NT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+++|.+++++++..||+|.+|.-.. +. ....+.-|.++|++++|+++|.+|.+|+..+-+-+|.+++.+ .+-++
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999997543 21 345677889999999999999999999999999999987543 33334
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec---cCC--------CCcceeEEEEcCCccEEEeccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI---AEH--------SEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~--------~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
- -..+|..+. ++++.+.+....|+.|.+....+......+ ... .+. .+.++++|..+.++-.+-.+
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l-~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL-TTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc-ceeEEEcCCCCceeecCCCc
Confidence 3 456777766 999999999999999999977544322222 111 222 56678888555555444433
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.3e-10 Score=79.34 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=87.5
Q ss_pred eeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
+|+||++.|+..+. +..|.+||+.+++... +....+......|+|+|+.++ +.+.+| .|++||+.. ++ ...
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~ 286 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LTR 286 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eEE
Confidence 68999999888763 3479999998876532 333344556789999999875 445555 588888753 23 333
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +++|+.++..+. +|. ++++++.+++.. .+..+... ...++|+|||++++..+.
T Consensus 287 lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~-~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 287 LTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY-NARASVSPDGKKIAMVHG 355 (433)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC-ccCEEECCCCCEEEEEEC
Confidence 443 333333334 889998877653 444 666677665533 23223332 556899999999886543
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=2.5e-10 Score=78.77 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=88.4
Q ss_pred eeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||+++|+.+..+ ..|.+||+.+++... +..+.+...+++|+|+|+.|+ +.+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 589999999877543 579999999875433 333445567789999998776 444444 577788752 22233
Q ss_pred cccccccceeE-eeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 76 FVGLSPNSVDA-LLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 76 ~~~~~~~~v~~-~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.. +...... ..+++++.|+..+. ++ .|+++|+.+++.. .+..+.. ....+.|+|+|++++.++..
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEcc
Confidence 333 3322222 23778888776554 33 5777788766543 3333334 36778999999998876654
No 229
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.30 E-value=3e-11 Score=79.60 Aligned_cols=99 Identities=9% Similarity=0.101 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc-cccccccceeEeeecCCCEE
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDALLKLDEDRV 95 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l 95 (150)
..+.+|....+ ....+.+|...++.++++||++++++++.|..|++-..... ..+.. +-| |..-|..+.-.++..|
T Consensus 132 ~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~IesfclG-H~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 132 YSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFCLG-HKEFVSTISLTDNYLL 208 (390)
T ss_pred eeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhccc-cHhheeeeeeccCcee
Confidence 33444444433 23344688899999999999999999999999999766433 33333 347 9999998887778889
Q ss_pred EEecCCCcEEEEeccCCeeeeec
Q 031924 96 ITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
++++.|+++++||+.+++.+..+
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecCCCCcEEEEecccCCccccc
Confidence 99999999999999999877654
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.6e-10 Score=79.73 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=97.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc------cccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF------VGLSPN 82 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~ 82 (150)
-|++++....|+-+++++|+.+..+....+.++++..++...+|++|+.+|.+..||.+... ...++ .. |+.
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s-~pg 224 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNS-HPG 224 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh-hheeeecccccCC-Ccc
Confidence 34444455588999999999888888778899999999999999999999999999987432 22222 12 222
Q ss_pred -----ceeEeee-cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC--ccEEEe
Q 031924 83 -----SVDALLK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV--LCFINS 140 (150)
Q Consensus 83 -----~v~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s 140 (150)
.|+++.. .+|-.+++|+.+|.+.+||++..+++..-......||..+.|-+. +..++|
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe
Confidence 3777774 458899999999999999999988766553333468888998765 334444
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=5.3e-10 Score=76.92 Aligned_cols=141 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC---CCcEEEEEEE--------------------eCCCEEEeecCCCe
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVLM--------------------KNGRKVVCGSQSGT 60 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~d~~ 60 (150)
.|...+++....||.+++||...++....+... .+.-.+..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355678999999999999999998766555432 2333444443 12335778889999
Q ss_pred EEEEEcccccccccccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 61 VLLYSWGYFKDCSDRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
+.+|+.. .++...++. +.|.+.+.++. ..+-..|.+++.|+.+..|+...++.++.+..... .+.+++.+|||..+
T Consensus 82 v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 9999985 456666665 33888999887 66778999999999999999999999999877766 49999999999999
Q ss_pred Eecccccc
Q 031924 139 NSGFLSLN 146 (150)
Q Consensus 139 ~s~~~~~~ 146 (150)
++++....
T Consensus 160 ~~as~~ik 167 (541)
T KOG4547|consen 160 LTASRQIK 167 (541)
T ss_pred EeccceEE
Confidence 98887644
No 232
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=77.51 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=62.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
+.+.||++.+++++.|+.||+|..++.+++..++-|.+.+++++|+|+-..++.++.|+.|.+|++
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 356799999999999999999999999999999999999999999999999999999999999986
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=2.8e-10 Score=73.30 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=82.6
Q ss_pred eEEE-EcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCe-EEEEEcccccccccccc-cccccc
Q 031924 9 KLLG-TSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNS 83 (150)
Q Consensus 9 ~l~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~-~~~~~~ 83 (150)
+|+. |-.-|+|.|-|+...+. ...+..|...|.|++.+.+|..+++++..|+ |||||.. .+..++.+. |.....
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-DGTLLQELRRGVDRAD 228 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-CCcEeeeeecCCchhe
Confidence 3443 33679999999987655 3677899999999999999999999999987 6799986 456566554 324567
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+.++. +|+..+|++++..|+++++.++.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 88888 99999999999999999998864
No 234
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.3e-09 Score=75.48 Aligned_cols=137 Identities=15% Similarity=0.052 Sum_probs=82.0
Q ss_pred eeecCcceEEEEcC-CC----eEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccc--cc
Q 031924 2 TFAADAMKLLGTSG-DG----TLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGY--FK 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d~----~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~--~~ 70 (150)
+|+|||+.|+..+. +| .+..|++..+ +...............+|+|||+.|+..+ .+|...+|.+.. .+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998886542 22 3444676652 22222222223345679999999877554 567666665421 12
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.....+.. ....+.... +|+|+.|+..+.+ ..|++||+.+++... +..... .+....|+|||+.|+..
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYS 388 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEE
Confidence 22333433 333333433 8999988766543 368999998776543 333333 36788999999987743
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=7.9e-10 Score=76.77 Aligned_cols=135 Identities=18% Similarity=0.068 Sum_probs=86.1
Q ss_pred eeecCcceEE-EEcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+ +.+.++ .|.+||+++++. ..+..+........|+|||+.++..+ .+| .|+++|+. +...++
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEE
Confidence 6999998776 444454 477778887754 34555555667789999999887665 344 56666764 333344
Q ss_pred cccccccceeEe-eecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ........ .+|+|+.++..+.+ ..|.+||+..+.. +.+.. .. .+..+.|+|||+.|+..+.
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~-~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GF-LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CC-CCCCCeECCCCCEEEEEEc
Confidence 433 33333333 48899988776543 3677888755433 33322 22 3678899999998876443
No 236
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=5.9e-11 Score=77.30 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=95.9
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccc---cc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC---SD 74 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~---~~ 74 (150)
|...++++..|+.+|.|..+|++.+. ......-|.+.|+++..-. ++++|++.+.+|+|.+||.+.. ++ +.
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~ 338 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVM 338 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hccccee
Confidence 45567899999999999999998751 1222335788999998877 7899999999999999999754 44 66
Q ss_pred cccccccccee---EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC---cceeEEEEcC
Q 031924 75 RFVGLSPNSVD---ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLGIAS 133 (150)
Q Consensus 75 ~~~~~~~~~v~---~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~ 133 (150)
++.+ |-+.-. ....+....+++++.|...|+|.+++++.+.+++.... ..+.+++|+.
T Consensus 339 qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 339 QYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 6667 654333 23356677888899999999999999998888753322 1255666653
No 237
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.23 E-value=8e-11 Score=53.97 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=35.9
Q ss_pred eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+++..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788899999999999999999999999999999997
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.8e-09 Score=75.16 Aligned_cols=136 Identities=14% Similarity=0.049 Sum_probs=83.1
Q ss_pred eeecCcceEEEEcC-C--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG-D--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+. + ..|.+||+.+++... +....+......|+|||+.|+. .+.++. |.++|+. +.....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~--tg~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA--TKALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC--CCCeEE
Confidence 69999998887643 2 368889998876432 2222333457899999998864 556665 6666764 223334
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +++++.++..+. ++ .|+++|+.+++... +...... ....+|+|||++++..+.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~-~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ-NLGGSITPDGRSMIMVNR 369 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC-CcCeeECCCCCEEEEEEe
Confidence 443 333333333 888887766553 34 46666776665433 2222222 345789999998876544
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=2.9e-09 Score=72.29 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=86.7
Q ss_pred ceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+++ ++-..+++|.+.|..+.+.+.++......-..+.++|||+++++.+.||.+.++|+.+ .+.+.+++. ...+ ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~-G~~~-~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV-GGNP-RG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE--SSEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec-CCCc-ce
Confidence 344 4556899999999999998888876544445578999999999999999999999964 467777765 4444 44
Q ss_pred ee-ecCCCEEEEec-CCCcEEEEeccCCeeeeeccCCC------CcceeEEEEcCCcc-EEE
Q 031924 87 LL-KLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS------EYPIESLGIASVLC-FIN 139 (150)
Q Consensus 87 ~~-~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~l~ 139 (150)
+. +++|++++++. ..+.+.++|.++.+.++.+.... ...+..+..+|... +++
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 54 89999988776 57899999999988888764321 11356666677666 443
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.1e-09 Score=74.61 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=85.1
Q ss_pred eeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+.+ ..|.+||+.+++... +....+......|+|+|+.|+ +.+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 689999988876533 468999998875433 333334455789999999886 444555 577778753 22333
Q ss_pred cccccccceeEe-eecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +....... .+++++.++..+. ++ .|+++++.+++..+.. .... ......|+|||++++..+.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEECCCCCEEEEEEc
Confidence 443 33333333 3788887766553 33 5777787766643322 2112 2445789999999886553
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.7e-09 Score=73.37 Aligned_cols=119 Identities=10% Similarity=0.105 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEcccccccccccccccccceeEee-ecCCC
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDED 93 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~ 93 (150)
.++++++++.......+. .+++|.++.|+|+++.|++ |-.-.++.+||++ +..+..+. +++-.++. +|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~---egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP---EGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC---CCCccceEECCCCC
Confidence 367788877444444333 4789999999999987754 4466789999986 55555553 34455555 88999
Q ss_pred EEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 94 RVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 94 ~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+++.++- -|.|-+||..+.+.+..+.... -+-..|+|||++++|+..+
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEecc
Confidence 8877663 4799999999988887775442 4457999999999998876
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=2.8e-09 Score=69.40 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|..|..+++++ ..++.|.+|++.+.+-...+......+..++|+|||+.+. +..-+-.|.+|.+.+. +. ..++-
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~-~~~~~ 131 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KG-YLLPH 131 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-ee-EEecc
Confidence 3577777766665 5788999999999888888888888999999999997765 5556789999998533 21 11111
Q ss_pred ccccceeEee-ecCCCEEEEecC------------------------------------CCcEEEEeccCCeeeeeccCC
Q 031924 79 LSPNSVDALL-KLDEDRVITGSE------------------------------------NGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~------------------------------------dg~i~~~d~~~~~~~~~~~~~ 121 (150)
....+.... .++|++.+..+. +..+.+||--- ....+..+
T Consensus 132 -pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--eykv~aYe 208 (447)
T KOG4497|consen 132 -PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--EYKVYAYE 208 (447)
T ss_pred -cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--hheeeeee
Confidence 112233333 555554443332 11233343211 11112234
Q ss_pred CCcceeEEEEcCCccEEEeccccccccCC
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
.+.++..++|+|.+++|+.|+.++.++.|
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhh
Confidence 44568899999999999999999877654
No 243
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.17 E-value=7.3e-10 Score=77.97 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=103.5
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.|.+ +-..++.|+.+|.|.--+....+ .+.....|.+.+.++.++|-+..++..+.|.++++|........
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 4555 45578888899998874433221 13345567889999999998766655555999999987523345
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..+.. +...++.+. +| ....++++..||.+.+||+... .+......+.. ..+.+.|++.|+.|+.|...|++.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 555555 677788877 66 3458888889999999999643 34444444433 578889999999999999988654
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.8e-09 Score=78.61 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=105.9
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC----cEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
-+.++++....++.+-+||...+.....+...+- ...-+.++++.-++++|+.-+.+.+|++... +.-..+.+ |
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-H 174 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-H 174 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-c
Confidence 3567888888899999999988766655544322 1222334566778899999999999998633 33336788 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
++.+..+. +.+|+++++.+.|..+|+|++.+.+... ..-.|.. .+..+.|.|. .++|++-+-..
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEE
Confidence 99999998 8899999999999999999999887665 4447877 6999999998 88888766443
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.16 E-value=4e-10 Score=73.22 Aligned_cols=136 Identities=7% Similarity=0.018 Sum_probs=98.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|||+|+++++++.- ++-|-|.++-+..+.+. .-+.|.-+.|..|..+++++ ..++.|.+|++... .-..++.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 689999999999665 88999988765443332 24567778898888888776 46779999999643 44455555 5
Q ss_pred ccceeEee-ecCCCEEEE-ecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...+..+. +|+|+.+.. ..-+-+|.+|.+.+.+.... .|....+..++|+|||++.+.++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCCCceeeeeec
Confidence 66677666 999976655 45588999999987665332 233334788999999999887653
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=4.1e-09 Score=72.76 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=86.3
Q ss_pred CeeecCcceEEE-EcCC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CC--eEEEEEccccccccc
Q 031924 1 MTFAADAMKLLG-TSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~ 74 (150)
++|+||++.|+. .+.+ ..|.+||+.+++.. .+..+........|+|+|++|+..+. ++ .|.++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 368999987764 4444 45888998877543 33334444456789999998875543 44 466666642 2223
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
++.. +........ +++++.++..+.++ .|.+||+.++.. +.+... . ......|+|||+.|+..+...
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~-~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-G-LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-C-CCCCceECCCCCEEEEEEeCC
Confidence 3332 333333333 88999888877765 788889877543 333222 2 245568999999888766543
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=2.3e-08 Score=69.76 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=79.7
Q ss_pred eeecCcceEEE-EcCCCe--EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++. |.++|+++++.. .+..+........|+|||++++..+ .++. +.++|+.. ++ ..+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998875 445554 777888877543 3444445567789999999886554 3454 44455532 22 222
Q ss_pred ccccccc-ceeEeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~-~v~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ... ......+++|+.++..+. ++ .|.++|+.+++. ..+... . ......|+|||+.|+..+.
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~-~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-R-LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-C-CCCCceECCCCCEEEEEEe
Confidence 221 111 112234889988877654 34 455568776654 333222 1 1234589999998776543
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=5.2e-08 Score=66.54 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=96.1
Q ss_pred cCcceEEEEcCCC-eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 5 ADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 5 ~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
-+++-++.|..|| .+-+||..+++ .++++..-+.|.++..+++|++++++.....+.++|+.+ +.....-+. ...-
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS-~~~l 445 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKS-EYGL 445 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccc-ccce
Confidence 3556777888888 89999999885 445566778999999999999999999989999999863 332222223 4566
Q ss_pred eeEee-ecCCCEEEEecCCC----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 84 VDALL-KLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
|+.+. ++++++++-+--+| .|+++|+..++....-... .. -.+-+|.||+++|-
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a~-DfsPaFD~d~ryLY 504 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-AY-DFSPAFDPDGRYLY 504 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-cc-ccCcccCCCCcEEE
Confidence 77776 88999999887776 6899999888866544321 21 33568899998764
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=2.2e-07 Score=62.86 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=87.9
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCe--ee--eeec-cCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccc-cc--
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGY-FK-- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~-~~-- 70 (150)
+.|+|+++++++.. +...|.+|++.... .. ..+. ......+.+.|+|+++++++. -.++.|.+|++.. .+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 36899999888764 56699999997754 21 2222 334467899999999988655 4678999998861 22
Q ss_pred ccccccccc-----cccceeEee-ecCCCEEEEec-CCCcEEEEeccC--Ce--eeeeccCCCCcceeEEEEcCCccEEE
Q 031924 71 DCSDRFVGL-----SPNSVDALL-KLDEDRVITGS-ENGLISLVGILP--NR--IIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 71 ~~~~~~~~~-----~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+..+.+... .......+. +++|++|+++. ..+.|.+|++.. ++ .+..+..... ..+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-FPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-SEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-CccEEEEeCCCCEEE
Confidence 122222210 011334455 89999876655 567899999842 33 3334433333 378899999999988
Q ss_pred eccc
Q 031924 140 SGFL 143 (150)
Q Consensus 140 s~~~ 143 (150)
.+..
T Consensus 308 Va~~ 311 (345)
T PF10282_consen 308 VANQ 311 (345)
T ss_dssp EEET
T ss_pred EEec
Confidence 7764
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.5e-08 Score=68.56 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=81.8
Q ss_pred eeecCcceEEE-EcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++ .|.++|+.+++.. .+..+........|+|+|+.++..+ .++ .|+++++.. ++ ..+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6888899887543 3444445556778999999876554 344 455566542 22 222
Q ss_pred ccccccccee-EeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVD-ALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~-~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ...... ...+++++.++..+. ++ .|.++|+.+++. ..+.. .. ......|+|||+.++..+.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~-~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TS-LDESPSVAPNGTMLIYATR 393 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CC-CCCCceECCCCCEEEEEEe
Confidence 221 111111 233788888877654 33 577889877654 33322 12 1335689999998876553
No 251
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=4.6e-09 Score=69.95 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=89.2
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----cccccccccccccceeEee-ecCCCEEEEecCCCcE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-----KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLI 104 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i 104 (150)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|.+... .+.++.....|...|.|+. ...++.+.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345678899999999999999999999999999998521 1223332221557788888 5667789999999999
Q ss_pred EEEeccCCeeeeeccCCC--CcceeEEEEcCCccEEEeccccccc
Q 031924 105 SLVGILPNRIIQPIAEHS--EYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..-|+.+.+.+..+.... + .|..+..+|..+.+++.+.++.|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRG-DVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred EeeecccceeeeeecccCccc-ceeecccCCCCceEEEEecCceE
Confidence 999999998887773322 2 48899999988888877766544
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.99 E-value=1.4e-07 Score=64.44 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=101.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC-eEEEEEcccccccccccccccccce
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+|.+++..|. |+..+.+.-.+-.++ .++...|.-..+..+++.++.|..|| .+-+||.+ +-..+++.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~--~~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD--GGEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecC--CceEEEeeC-Cccce
Confidence 5777777754 466676655553333 25566788888888888999999998 99999985 334445554 56678
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.++. +++|+.++.+.....+.+.|+.++.....-+...+. |+...|+|+++++|-+.-++-
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~l-Itdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGL-ITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccce-eEEEEEcCCceeEEEecCcce
Confidence 8887 899999999999999999999988764444444454 999999999999998876553
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=82.46 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=87.6
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------------
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------- 69 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------- 69 (150)
+|...+.++|+.||.+++|....++.+.... .-...++.+.|+.+|+.+..+..||.+.+|.....
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALS 2296 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcccc
Confidence 4667788999999999999988776554332 22378999999999999999999999999976421
Q ss_pred ------------------------------c-ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 70 ------------------------------K-DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 70 ------------------------------~-~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
. ..+. +. |....+++. .|+.+++++|+.+|.|++||++..+..+.
T Consensus 2297 Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2297 DFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred ceeeeehhhhccccCCCCCcccchhcccCcccceee--ee-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 0 0111 34 777888888 78889999999999999999987776665
Q ss_pred cc
Q 031924 118 IA 119 (150)
Q Consensus 118 ~~ 119 (150)
++
T Consensus 2374 ~~ 2375 (2439)
T KOG1064|consen 2374 FQ 2375 (2439)
T ss_pred hh
Confidence 53
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=1.2e-07 Score=61.03 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=94.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCC------CcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE------EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSP 81 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~ 81 (150)
.++-+..+|.|.+|..........+.+-. ..-.++.|++.+..++++..+|.+.+-+..... +..+..+. |+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence 44556677788887655433222222211 124578889999999999999999955542221 33446677 76
Q ss_pred cceeEee--ecCCCEEEEecCCCcEEEEecc-CCeeeee-ccCCCCcceeEEEEcC-CccEEEeccccccccC
Q 031924 82 NSVDALL--KLDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLGIAS-VLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~~ 149 (150)
-..-... ..+.+++.+|+.|+.+..||++ +++.+.. .+.|.. +|.++.-+| ++.++++|+.+-.+..
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceee
Confidence 5554433 4466899999999999999998 5554443 456655 688888775 6889999998877654
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=69.44 Aligned_cols=130 Identities=13% Similarity=0.167 Sum_probs=93.8
Q ss_pred EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----cccccccccccccceeE
Q 031924 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 11 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~v~~ 86 (150)
++.+.+-.+-+-|++++- ...+. ..+.|.++.|...++.++.|+.+|.|..+|++.. +.+.+.+ - |+..+++
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-y-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-Y-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-E-cCcchhh
Confidence 455577788888988873 22333 5678999999998999999999999999999754 3344444 3 7888998
Q ss_pred ee--ecCCCEEEEecCCCcEEEEeccCCee---eeeccCCCCcc-eeEEEEcCCccEEEecccc
Q 031924 87 LL--KLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEYP-IESLGIASVLCFINSGFLS 144 (150)
Q Consensus 87 ~~--~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~~ 144 (150)
+. ...++.|++.+.+|.|++||.+--++ ++.+.+|.... -.-+.+.+....+++++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 86 44678999999999999999986555 77777775421 1123345555666666544
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=5.2e-07 Score=61.08 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=91.0
Q ss_pred CeeecCcceEEEEcC----CCeEEEEEcCCC--ee--eeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSG----DGTLSVCNLRKN--TV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~ 71 (150)
++++|++++|++... ++.|..|.+... +. +.+..........++++|++++++++.. +|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 467899999998865 579999988764 32 3333323445677899999999988874 79999999975443
Q ss_pred cccc---cc--c--c-----cccceeEee-ecCCCEEEEec-CCCcEEEEeccCCe--e--eeeccCCCCcceeEEEEcC
Q 031924 72 CSDR---FV--G--L-----SPNSVDALL-KLDEDRVITGS-ENGLISLVGILPNR--I--IQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 72 ~~~~---~~--~--~-----~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~~--~--~~~~~~~~~~~i~~~~~~~ 133 (150)
.... +. + . ......++. .|+++++++.. ....|++|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 2221 10 0 0 012233444 88998777654 35589999886543 2 2223333344688999999
Q ss_pred CccEEE-eccccccc
Q 031924 134 VLCFIN-SGFLSLNV 147 (150)
Q Consensus 134 ~~~~l~-s~~~~~~v 147 (150)
+++++. ..-.+..|
T Consensus 202 dg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 202 DGKYAYVVNELSNTV 216 (345)
T ss_dssp TSSEEEEEETTTTEE
T ss_pred CcCEEEEecCCCCcE
Confidence 998764 43444433
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-08 Score=75.16 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred EEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEccccc------ccccccccccccceeEee-ecCCC
Q 031924 22 CNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDALL-KLDED 93 (150)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~-~~~~~ 93 (150)
|..+ |..+..+..|...+..++.++.. .+|++|+.||+|++|+.+... +...++.. ....+.++. -..++
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCC
Confidence 4433 55778888888888888888765 999999999999999986321 11222222 244555655 55777
Q ss_pred EEEEecCCCcEEEEecc
Q 031924 94 RVITGSENGLISLVGIL 110 (150)
Q Consensus 94 ~l~~~~~dg~i~~~d~~ 110 (150)
.++.++.||.|++.++.
T Consensus 1112 ~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred eEEEEcCCCeEEEEEcc
Confidence 88888888888887654
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.8e-08 Score=71.94 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=100.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---------------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+.|+.+..+|++|+.||.+++..+.+.. ..+.+++|.+.|.-+.|+.+.+.|.+...+|-|.+|.
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 3688899999999999999999876531 1256789999999999999999999999999999999
Q ss_pred cccccccccccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 66 WGYFKDCSDRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+- .+.....+. ....+.|.++. ..+|..++....||.|.+=.++.++....-- .+.....+.|++|.+.+..+
T Consensus 100 ly-kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 100 LY-KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred ee-cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhh
Confidence 85 444444433 21344556666 7799999999999999888776554432211 11125567788877655433
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=4e-07 Score=63.06 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=82.3
Q ss_pred eeecCcce-EEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCC--CeEEEEEccccccccc
Q 031924 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~i~~~~~~~~~~~ 74 (150)
.|+||++. ++..+. +..|.++|+.+++..... ...+......|+|||+.++. .+.+ ..|.++++. . ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~-g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-T-KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-C-CcEE
Confidence 58999984 554432 467999999888654333 34555667889999987754 4434 456666764 2 2233
Q ss_pred cccccccc-ceeEeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 75 RFVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 75 ~~~~~~~~-~v~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+.. +.. ......+|+|+.|+..+. .+ .|++.|+.+++..+.. ..... ...|+|||++++..+.
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~---~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN---NSSVSTYKNYIVYSSR 338 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc---CceECCCCCEEEEEEc
Confidence 4433 332 222334889987766653 33 6777788776654433 22121 2489999998876554
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=3.8e-07 Score=58.22 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=93.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe-e-ee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc---
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-V-QT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--- 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--- 75 (150)
++++|++++++.+....|..|.+.... . .. .....++.-.+..|+.....++++.+||++.|||++..+.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 578999999999999999999887632 2 22 33445556678899999999999999999999999865433222
Q ss_pred -cccccccceeEee-ecCC--CEEEEecCCCcEEEEeccCCeeeeeccC-------CCCcceeEEEEcCCcc
Q 031924 76 -FVGLSPNSVDALL-KLDE--DRVITGSENGLISLVGILPNRIIQPIAE-------HSEYPIESLGIASVLC 136 (150)
Q Consensus 76 -~~~~~~~~v~~~~-~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~ 136 (150)
-+. |.+.+..+. ++.| .+|...-.-+.+.+.|+++.+..+.+.. |....|....|+.++.
T Consensus 245 trp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 245 TRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 234 677777665 5443 3566556678999999998775554422 2222356666666554
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.8e-09 Score=71.72 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=105.8
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCe------eeeee------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNT------VQTRS------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~------~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
+.+|. ..++++++.|..+++||.+.-. .+..+ ....-.|++++|+.++.-+.+...|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 44563 4488889999999999976521 11111 12233689999998877777777888899985321
Q ss_pred c-c----------ccccc-ccccccccee--Eee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc
Q 031924 69 F-K----------DCSDR-FVGLSPNSVD--ALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 69 ~-~----------~~~~~-~~~~~~~~v~--~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (150)
. + +.... +++ |.+.-+ .+- -|...++++|+..|.|.+|+-.+++.++.+.+... -|+|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 22233 667 765433 332 56788999999999999999999999998877666 59999999
Q ss_pred CCccEEEecccccccc
Q 031924 133 SVLCFINSGFLSLNVN 148 (150)
Q Consensus 133 ~~~~~l~s~~~~~~v~ 148 (150)
|--.+||+.+.+..|.
T Consensus 446 P~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVK 461 (559)
T ss_pred CCCchhhccCCcccee
Confidence 9999999999988774
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.6e-07 Score=65.19 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eeecCcceEEEEc-CCCeEEEE--EcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEccccccccc
Q 031924 2 TFAADAMKLLGTS-GDGTLSVC--NLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~i~i~--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~ 74 (150)
.|+|||+.|+..+ .++...+| ++.. +.....+......+....|+|||++|+....+ ..|.+||+.. ++. .
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~ 364 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-Y 364 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-E
Confidence 6999999877665 46655555 4432 22233444444566788999999988765433 4688899853 232 3
Q ss_pred ccccccccceeEee-ecCCCEEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.+.. ....+.... +++|+.|+.... ...++++|+..++..... ...+ .+...+|+|-.
T Consensus 365 ~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 365 QLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSG-EKRFPSWGAFP 426 (428)
T ss_pred EccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-cccCceecCCC
Confidence 3332 222333333 788887765432 346888898776654433 3334 36678888754
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.2e-08 Score=46.60 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=33.5
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
+++.++.+ |...|.++. .|+++.|++++.|+.|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677888 999999999 89999999999999999997
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=3e-07 Score=58.63 Aligned_cols=126 Identities=8% Similarity=-0.059 Sum_probs=82.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc--ccccccceeE
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSPNSVDA 86 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~ 86 (150)
.+..++.|.++++.+++-+.....+....-....+.++++++++++.+....|..|.+...+..+..+ .. ..+.-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~-t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP-TSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-cCCCcee
Confidence 34556677777777776543222221111237899999999999999999999999886544333222 11 2222223
Q ss_pred ee-ecCCCEEEEecCCCcEEEEeccCCe-eee----eccCCCCcceeEEEEcCCcc
Q 031924 87 LL-KLDEDRVITGSENGLISLVGILPNR-IIQ----PIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 87 ~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~----~~~~~~~~~i~~~~~~~~~~ 136 (150)
.. +.+...++++.+||++.+||++... +.. .-+.|.+ .++.+.|++.|.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGL 263 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCc
Confidence 33 6677899999999999999998644 222 2234666 599999998553
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=5.5e-07 Score=62.40 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=79.9
Q ss_pred eeecCcceEEEE-c--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGT-S--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~-~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.++.. + .+..|.++|+..++.. .+......-....|+|||+.++-.+ ..+ .|.+.|+.. ++ .++
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEe
Confidence 589999877654 2 3457888898877533 3433333334567999998876554 444 455556542 22 222
Q ss_pred cccccccceeEeeecCCCEEEEecCC---------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. .... ....+|+|+.++..+.. ..|.+.|+.++.. +.+... . ......|+|||+.++....
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEECCCCCEEEEEEc
Confidence 221 1111 22448999987766543 2677788877654 344333 2 2446889999998775543
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=8.9e-07 Score=67.65 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=92.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeee--------cc------CCCcEEEEEEEeCCCEE-EeecCCCeEEEE
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EF------SEEELTSVVLMKNGRKV-VCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~------~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~ 64 (150)
++|+| ++..+++...++.|++||..++...... .+ .-.....++++|+++.+ ++-+.++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46788 4556666678899999998876532110 00 11245679999998855 455667999999
Q ss_pred Ecccccccc------------ccccc---c----cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC----
Q 031924 65 SWGYFKDCS------------DRFVG---L----SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---- 120 (150)
Q Consensus 65 ~~~~~~~~~------------~~~~~---~----~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---- 120 (150)
|+...+... ..+-. . .-.....+. .++|+++++-+.++.|++||..++........
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 985322110 00000 0 000112344 67888888888999999999987665432210
Q ss_pred ---------CCCcceeEEEEcCCccEEEecccccccc
Q 031924 121 ---------HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 121 ---------~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.-. ....++++++|+++++-+.+..|.
T Consensus 848 ~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 848 FKDGKALKAQLS-EPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CCCCcccccccC-CceEEEEeCCCCEEEEECCCCEEE
Confidence 111 367899999999888777666554
No 267
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=8.2e-08 Score=69.99 Aligned_cols=141 Identities=12% Similarity=0.019 Sum_probs=98.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---------CCeEEEEEcccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~ 75 (150)
.+++.+.+|...|+|.+-|.++.+.++.+..|.+.+.++. -.|+.|++++. |..+++||++.. +.+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 3578899999999999999999999999999999988764 46888888764 567899999744 33333
Q ss_pred cccccccc-eeEeeecCCCEEEEecCCCcEEEEeccC--CeeeeeccCCC-CcceeEEEEcCCccEEEeccccccccC
Q 031924 76 FVGLSPNS-VDALLKLDEDRVITGSENGLISLVGILP--NRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 76 ~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.- +..+ ...+...-...++..+..|...+.|..+ .........+. +..+..++++++|+.+|.|...+.||.
T Consensus 262 I~~-~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 262 IQF-PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ccc-ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 322 2222 1111122335677788899999998432 12122222222 213999999999999999999998874
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=1.7e-08 Score=63.88 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred cceEEEEcCCCeEEEEEcCCCee-eeeeccCCCcEEEEEEEeCCCEEEeecC-----CCeEEEEEccccccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.++++..||.+.+++.+.-.. ..++........+.++...++.+.++.. -+..+.|+++..+....... .
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c
Confidence 56788899999999999876211 1222222222334444455665555432 23456666643222221111 2
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcC-CccEEEeccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v 147 (150)
...+.+++ .| ..+.+++|+.||.+-+||.+... +...+.+|+. ++..+.|+| ++..|.+++.+|.+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcE
Confidence 33477777 44 56688889999999999998764 4455678877 699999998 66788888887754
No 269
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.77 E-value=2.8e-07 Score=64.25 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEcCCCeee---eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEE
Q 031924 21 VCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVI 96 (150)
Q Consensus 21 i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~ 96 (150)
+|++..++.. .........+.+++++|+...++.|+.||+|.+||... . ..+... ..-..+.+. +|+|..++
T Consensus 240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~--~-~t~~~k-a~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR--G-VTLLAK-AEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC--C-eeeeee-ecccceEEEEcCCCcEEE
Confidence 5666554432 12224567899999999999999999999999999742 2 222222 333344555 88999999
Q ss_pred EecCCCcEEEEeccC
Q 031924 97 TGSENGLISLVGILP 111 (150)
Q Consensus 97 ~~~~dg~i~~~d~~~ 111 (150)
+|+..|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999853
No 270
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=3.8e-06 Score=54.00 Aligned_cols=139 Identities=8% Similarity=0.050 Sum_probs=88.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCC--eeeee---eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTR---SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+.+.+|+.||.. .|..|.|-..+.. ..+.+ -+....+-+.++|+||+..|+.+...|+|++||+. +..+..+
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~I 80 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFVI 80 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEEc
Confidence 456789998888 8888888876653 12222 22334467899999999999999999999999985 3333333
Q ss_pred ccc------cccceeEee--ecC-----CCEEEEecCCCcEEEEeccC-----Ceeeee--ccCCCCcceeEEEEcCCcc
Q 031924 77 VGL------SPNSVDALL--KLD-----EDRVITGSENGLISLVGILP-----NRIIQP--IAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 77 ~~~------~~~~v~~~~--~~~-----~~~l~~~~~dg~i~~~d~~~-----~~~~~~--~~~~~~~~i~~~~~~~~~~ 136 (150)
+.. -...|..+. ... ...|++-..+|.++-|-+.. .+.... +..|-...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 320 123344333 111 12566667788888776522 122222 2233233699999999988
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
+|..||-
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 8776664
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=3.5e-06 Score=54.16 Aligned_cols=147 Identities=11% Similarity=0.164 Sum_probs=90.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-------CCCcEEEEEEEeC------CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~~~~ 67 (150)
++||||+.+|+.+...|+|++||+...... .+.. ....|..+.|.+- ...|++-..+|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 589999999999999999999999864322 2221 1246777777643 2246777788888877652
Q ss_pred c--cc--cccccc--ccccccceeEee-ecCCCEEEEecC-CCc----------EEEEeccCCe----------------
Q 031924 68 Y--FK--DCSDRF--VGLSPNSVDALL-KLDEDRVITGSE-NGL----------ISLVGILPNR---------------- 113 (150)
Q Consensus 68 ~--~~--~~~~~~--~~~~~~~v~~~~-~~~~~~l~~~~~-dg~----------i~~~d~~~~~---------------- 113 (150)
. .+ +....| ....+..|.++. .+..++|+.|+. ... +..|.+-++.
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 1 11 222222 221466788777 666677776653 221 3445432211
Q ss_pred ----eeeec--------cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 114 ----IIQPI--------AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 114 ----~~~~~--------~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+..+ ...+...|..|..||||++||+...+|.+.
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 00000 011122488999999999999999998874
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=5.5e-06 Score=53.48 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=86.4
Q ss_pred CeeecCcceEEEEcCC--------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~ 71 (150)
++++|+|++.++.... |.+..++.. ++..... ..-...+.++|+|+++.|+ +-+..+.|..|++...+.
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3578888877776543 567777777 5443333 2345679999999998775 566778999998853322
Q ss_pred -c-----ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCcc-EEEe
Q 031924 72 -C-----SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLC-FINS 140 (150)
Q Consensus 72 -~-----~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~s 140 (150)
. ...+.. .......++ ..+|++.++....+.|.+++.. ++.+..+..... .+++++|. ++.+ +++|
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 1 111222 112244555 7788888888889999999987 887777755434 48999994 5544 4444
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.1e-07 Score=66.33 Aligned_cols=138 Identities=10% Similarity=0.145 Sum_probs=96.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
+.+.+++++.|+++++|.++.. .+..+.+.|..++.++.|-.+-+++++ .||-+.+||.- .++....+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPF-igr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPF-IGRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeeccc-ccchhHhhhc
Confidence 4567889999999999998752 256778899999999999998887765 57889999963 344443221
Q ss_pred cc---cccceeEeeecCCCEEEEe-cCCCcEEEEeccCCeeeeecc-----CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIA-----EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.. ....|.|+-+.+...++++ +...+|+++|.+.++-...++ .... .++++++.+.|+.+|.+=.+|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna-~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA-LTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch-heeEEEeccCcchhhHHhcCCcE
Confidence 10 1223444445455666666 668899999999876433332 2223 48899999999999887666544
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.74 E-value=7.2e-08 Score=63.19 Aligned_cols=68 Identities=6% Similarity=0.234 Sum_probs=58.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
+.|.|....++++..|..+.+||+-.++ ....+.+|...|..+...+--+.+++++.||.|.+|+++.
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 3688888999999999999999997654 3466788999999998888888999999999999999853
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=6.4e-07 Score=64.66 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=96.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC------------CCEEEeecCCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------GRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~~~d~~i~i~~~~~~ 69 (150)
.|+|.| +|+-|+.. .|.+.|..+-+.+..++.|...|+.+.|.|. .-.+++++..|.|.+||+. .
T Consensus 22 Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-~ 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-L 98 (1062)
T ss_pred ccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-h
Confidence 466665 67777555 7899999998889999999999999999864 1246788889999999985 3
Q ss_pred cccccccccccccceeEee----ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEE
Q 031924 70 KDCSDRFVGLSPNSVDALL----KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFIN 139 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~----~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 139 (150)
......+.. +..++..++ ..+. ..+++-.....+.+|+..+|+.+.+...... ...++.++| |.+.+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFC 172 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEE
Confidence 344455555 566666554 2233 4667777788999999999998887765545 467788777 444433
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2.8e-06 Score=56.14 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=89.2
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCC--Ceee--eeeccCCCcEEEEEEEeCCCEEEeecCC-CeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~ 72 (150)
|+|+|+.+.|+++.. +|.|..|.+.. |+.. ........+..-++++++|++++++.+. |.|.++-++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 578999998888753 57788777764 5432 2222223344889999999999988754 89999988654432
Q ss_pred c---cccc----cccccc----eeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeec--cCCCCcceeEEEEcCCccE
Q 031924 73 S---DRFV----GLSPNS----VDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 73 ~---~~~~----~~~~~~----v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~ 137 (150)
. +.+. +.|+.. +.... .|+++++++... --.|.+|++..++....- ...++...+.|.|+|++++
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence 2 2221 102111 33333 788988888764 347899999876532221 1223446889999999987
Q ss_pred EE
Q 031924 138 IN 139 (150)
Q Consensus 138 l~ 139 (150)
.-
T Consensus 205 aY 206 (346)
T COG2706 205 AY 206 (346)
T ss_pred EE
Confidence 54
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=7.2e-07 Score=59.45 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=95.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCee---eeeeccCCCcEEEEEEEeCCCEEEeecCCCeE---EEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV---LLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i---~i~~~~~~~~~~~~ 75 (150)
..+|++++++++..++...++++..... ......-...-+++.|..+......+..-|.+ .+|.... .....
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~ 146 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEP 146 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcch
Confidence 3577899999998888888888766432 11111222334566666666665555544444 4444321 23334
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+.| |-..++.+. ++|+++++++..|..||+-.......+..+ -+|..+ |..++.-++- .|++||.+..+.
T Consensus 147 ~lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF-VS~isl~~~~-~LlS~sGD~tlr 218 (390)
T KOG3914|consen 147 ILG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF-VSTISLTDNY-LLLSGSGDKTLR 218 (390)
T ss_pred hhh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh-eeeeeeccCc-eeeecCCCCcEE
Confidence 457 888888887 999999999999999999877554455544 368888 9999986654 588888887764
No 278
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-07 Score=61.57 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCC-----CcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSE-----EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.++.|...++++ .|-.|.+|+++--. .+..++.+. .-|++..|+|. -+.|+-.+..|+|++.|++...-+
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 456677777777 88899999987532 123334442 35788999997 456677788999999999743211
Q ss_pred c---cccccc-----------cccceeEee-ecCCCEEEEecCCCcEEEEec-cCCeeeeeccCCCC-------------
Q 031924 73 S---DRFVGL-----------SPNSVDALL-KLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE------------- 123 (150)
Q Consensus 73 ~---~~~~~~-----------~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~-~~~~~~~~~~~~~~------------- 123 (150)
. +.|... --..|..+. ++.|+++++-.. -+|++||+ ...+++.+++.|..
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1 111110 112333444 678899987543 58999998 45566666655542
Q ss_pred -cceeEEEEcCCccEEEecccccccc
Q 031924 124 -YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 124 -~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+.-..++|+-++.+++||+.+..+.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFR 354 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEE
Confidence 1234578999999999999876654
No 279
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=64.97 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=105.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeee-ccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccc--cc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~--~~ 75 (150)
+.|+..|..+++++.|..+.+||...++....+ .+|...|....|.|. .+.+++.+.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 457788999999999999999999988765444 477777777788885 5678999999999987665444333 33
Q ss_pred cccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec---cCCCC--cceeEEEEcCCcc-EEEeccccccc
Q 031924 76 FVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSE--YPIESLGIASVLC-FINSGFLSLNV 147 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~--~~i~~~~~~~~~~-~l~s~~~~~~v 147 (150)
+.. |.+++..+. -| ....|.+++.|+.+.-+|++...+-..+ ..++. .....++.+|... .+|+|+.+-.+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 344 888888777 33 5568999999999999999865432222 12222 1366788888655 78888876554
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 307 R 307 (559)
T KOG1334|consen 307 R 307 (559)
T ss_pred h
Confidence 3
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.3e-07 Score=62.12 Aligned_cols=109 Identities=12% Similarity=0.183 Sum_probs=79.7
Q ss_pred CeeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~ 75 (150)
+.|+|+++.++++ -.-.++.|||++.. ++.. -.+++-+++-|+|.|+.++.++ ..|.+-+||+.. .+++.+
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 4699999877664 35678999998743 4433 3467778999999999987765 348999999964 466666
Q ss_pred cccccccceeEeeecCCCEEEEecC------CCcEEEEeccCCeeee
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQ 116 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~ 116 (150)
+.. .+...+-++|+|+++++++. |+.+++|+. +|..+.
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH 395 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence 664 44455666999999998873 677889998 444433
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=9e-06 Score=53.81 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC-Ceee--eeeccCCCc----------EEEEEEEeCCCEEEeecCC-CeEEEEE
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTVQ--TRSEFSEEE----------LTSVVLMKNGRKVVCGSQS-GTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d-~~i~i~~ 65 (150)
+++++++++++++. ..|.|.++.++. |... .....|.+. +....+.|+++++++.+.. -.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 46788999999987 578999999866 4321 112223333 8889999999999887643 4788999
Q ss_pred ccccccccc----ccccccccceeEeeecCCCEEEEecC-CCcEEEEeccCC--e--eeeeccCC-----CCcceeEEEE
Q 031924 66 WGYFKDCSD----RFVGLSPNSVDALLKLDEDRVITGSE-NGLISLVGILPN--R--IIQPIAEH-----SEYPIESLGI 131 (150)
Q Consensus 66 ~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~-dg~i~~~d~~~~--~--~~~~~~~~-----~~~~i~~~~~ 131 (150)
+. .++... .++. ..++..-+.+|++++....++ +++|.+|..... + .++.+..- .......+.+
T Consensus 174 ~~-dg~L~~~~~~~v~~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LD-DGKLTPADPAEVKP-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cc-cCccccccccccCC-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 86 333221 1222 223333344889988776664 899999988652 2 33333211 1123678899
Q ss_pred cCCccEEEeccc
Q 031924 132 ASVLCFINSGFL 143 (150)
Q Consensus 132 ~~~~~~l~s~~~ 143 (150)
+|||++|..+..
T Consensus 252 s~dGrFLYasNR 263 (346)
T COG2706 252 SPDGRFLYASNR 263 (346)
T ss_pred CCCCCEEEEecC
Confidence 999999877543
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=1.8e-06 Score=65.99 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeec------------c---------CCCcEEEEEEEeCCCEEEeecCC
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSE------------F---------SEEELTSVVLMKNGRKVVCGSQS 58 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~------------~---------~~~~v~~~~~~~~~~~l~~~~~d 58 (150)
|+++|+++.|+ +-..++.|++||+.++....... + .-....+++++++|+.+++-..+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 46889988555 44578999999998764321110 0 01124688999999988888899
Q ss_pred CeEEEEEcccccccccccccc-------------cccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 59 GTVLLYSWGYFKDCSDRFVGL-------------SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 59 ~~i~i~~~~~~~~~~~~~~~~-------------~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
+.|++||... +... ++.+. .-.....+. .++|+++++-+.++.|++||+.+++.
T Consensus 825 ~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999852 2222 22110 111233445 77899999989999999999987654
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=6e-08 Score=61.42 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=65.7
Q ss_pred eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccccccccccceeEee-e-cCCCE
Q 031924 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-K-LDEDR 94 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~ 94 (150)
..+.|+++..+...........|++++-+|.. ..+++|+.||.+.+||++........++. |+..+.-+. + .++..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchh
Confidence 34445554433222222223458999999874 45678899999999999866555666677 888888665 3 47789
Q ss_pred EEEecCCCcEEEEeccC
Q 031924 95 VITGSENGLISLVGILP 111 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~ 111 (150)
|+++++||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999863
No 284
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.63 E-value=3.8e-06 Score=60.02 Aligned_cols=123 Identities=13% Similarity=0.016 Sum_probs=78.3
Q ss_pred CCeEEEEEcCC----C-eeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc-----------ccccccc
Q 031924 16 DGTLSVCNLRK----N-TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-----------CSDRFVG 78 (150)
Q Consensus 16 d~~i~i~d~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~-----------~~~~~~~ 78 (150)
+++|.+.|..+ + +.+..+. -......++++|||+++++++ .+.++.++|+..... ...+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 46788888877 2 3344333 345668999999999986654 689999999864322 1112221
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccC----------CeeeeeccCCCCcceeEEE------EcCCccEEEecc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPIAEHSEYPIESLG------IASVLCFINSGF 142 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~~~~~~~~i~~~~------~~~~~~~l~s~~ 142 (150)
...+.......+|+...+-..|..|-.|++.. ...+..+.-|-. +-.+. -.|||++|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEEcc
Confidence 23344444466777888888899999999875 234555544322 22222 368999988754
No 285
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=3.2e-07 Score=57.12 Aligned_cols=127 Identities=24% Similarity=0.342 Sum_probs=88.2
Q ss_pred EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec-
Q 031924 12 GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL- 90 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~- 90 (150)
..+.++.|+-+++...+...+.+...... .....-+..+++|+.+|.+.+|.+...+.....+.. ....+.+..+.
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccc
Confidence 34566677766665543222211111111 122234677999999999999998766666666665 56667666633
Q ss_pred -CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 91 -DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 91 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
++.+..+++.||.||.|++...+.+.....|...++.....+..+++++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIA 163 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEee
Confidence 445889999999999999999998888888874578888888888888877
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=2.8e-06 Score=58.18 Aligned_cols=134 Identities=7% Similarity=-0.016 Sum_probs=83.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..++.++.++.+..||.++++.+...... ..... ...+..++.++.+|.+..+|.. .++..-+... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p--~~~~~~vyv~~~~G~l~~~d~~-tG~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP--AVDDNRLYVTDADGVVVALDRR-SGSELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc--eEeCCEEEEECCCCeEEEEECC-CCcEEEcccc-ccCCccc
Confidence 456777778999999999999877655421 11122 2346778888899999999985 3444333311 1111111
Q ss_pred eeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.-...+..+++++.+|.++++|..+++.+..+..+...-.....+. +++ |..++.++.|.
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~ 374 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLY 374 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEE
Confidence 1122467888999999999999999998888765543112222333 333 55666666553
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=2.1e-07 Score=66.80 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=95.9
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|.|+|.. ..+++++.|..+..||+++.. ++.....-...-..++|+.....+.+.+....+++||.+..+.....+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 3466643 478889999999999998854 34444444556678999876666666778889999999877778888888
Q ss_pred ccccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 79 LSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 79 ~~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
|...+..+. ......+++++.|++|++||-..............+||..-++-|=|.
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 877777765 334567889999999999997543222222222345788888887554
No 288
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.60 E-value=3.1e-07 Score=64.06 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=54.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
+++|+...++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 67899999999999999999998776322 22333457899999999999999999999999985
No 289
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=7.4e-07 Score=58.63 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=75.6
Q ss_pred EEcCCCeEEEEEcCC--CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-
Q 031924 12 GTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL- 88 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~- 88 (150)
.|...|.+.+..+.. -..+.++.+|.+.+.+++|.+..+.+++|..|..+.+||+...........+ |...+..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 344445555444333 2356778899999999999999999999999999999999644344455567 888888777
Q ss_pred ecCCCEEEEecCCCcEEEEeccC
Q 031924 89 KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
..-.+.+++++.||.|.+|++..
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccc
Confidence 45567889999999999999864
No 290
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.58 E-value=8e-06 Score=56.93 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=74.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE-cccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~-~~~~~~~~~~~~~~ 79 (150)
|.++|+++.++++ ++|...+|.....+... .+.-....|.++++ +++-..+++|.++. +. ......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~--~~~~k~i~~- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK--NEVVKSIKL- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE--E-TT------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc--cccceEEcC-
Confidence 4689999999985 78888888854433222 23345678988555 66666688999963 32 233334433
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+..+..+.. |.+|...+.+ .|.+||+.+++.++.+... +|..+.|+++|+++|-.+.+
T Consensus 108 -~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 108 -PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred -CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence 233455544 7777776544 8999999999999998533 48999999999998876543
No 291
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.55 E-value=5.4e-06 Score=61.05 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=88.0
Q ss_pred cceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCc-EEEEEEEe-----CCCEEEeecCCCeEEEEEcccccc-ccc----
Q 031924 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (150)
Q Consensus 7 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~-~~~---- 74 (150)
.+.|+.. ...+.|+-.|++.|+.+.....+... +..++-.. .....+.|-.+..+..||.|..+. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3344443 35678999999999999888776543 44443221 123456677778899999986542 221
Q ss_pred ccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 75 RFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 75 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+. ......|++.....+|+.|+.+|.||+||-...+....+++-.. ||..|..+.||++++..+-
T Consensus 573 ~Y~--~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 573 QYS--SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK 638 (794)
T ss_pred ccc--cCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec
Confidence 121 23445666655667899999999999999543333334444444 8999999999998665443
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.52 E-value=4.4e-05 Score=51.67 Aligned_cols=111 Identities=9% Similarity=-0.020 Sum_probs=77.0
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC----------CCeEEEEEccccc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~i~~~~~~~ 70 (150)
+.+.++..... ++|.+.|..+++.+..+..-..+ ..+ ++||++.++++.. +..|.+||..+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 44455554433 89999999999888776643333 234 9999999876654 78999999864 3
Q ss_pred cccccccccccc--------ceeEeeecCCCEEEEec-C-CCcEEEEeccCCeeeeeccC
Q 031924 71 DCSDRFVGLSPN--------SVDALLKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 71 ~~~~~~~~~~~~--------~v~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~ 120 (150)
+...++.. .+. +.....+++|++++... . +..|.++|+.+++.+..+.-
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 55555542 122 11233489999888766 4 68999999999998887753
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.4e-06 Score=59.60 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=92.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-----------CCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~~~~~~ 69 (150)
+.|||-|.+|++-..-| |.+|--++...++++. | ..|.-+.|||+.++|++-+. ...+.|||++ .
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~-t 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA-T 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc-c
Confidence 47999999999997764 8899766655554443 3 35788999999999998652 2579999996 4
Q ss_pred cccccccccc-cccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 70 KDCSDRFVGL-SPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 70 ~~~~~~~~~~-~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
|.....|... .+...-.+. +.++++++.-.. ..|.+|+..+-.++..-..... .|....|+|.+++||-
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAY 363 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcceEEE
Confidence 5666666531 112222333 778888876655 5788998766444333222223 5888899999998884
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6e-06 Score=55.52 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=60.3
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
|+|+|..+ ++..++.+++|+|.|+++.........+ ..+.+++|..+ ..++.+|..+|.|.+||++........+
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 57899776 7888899999999999998776666655 78899999987 5567889999999999998655444444
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.1e-05 Score=58.59 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=91.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-----CCEEEeecCCCeEEEEEcccccccccc-cccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGL 79 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~ 79 (150)
+|+++++|+.||++.|..+.+.+...... ...++.+++++|+ .+.+++|+..| +.++.-+-.+..... ...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 68999999999999999988876555443 3467899999998 56799999998 777764212221111 222
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-----ceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----PIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++|.++. ..|++++-++.+| |++||..+++.+..++..... -...+.|.++.+++..=+.+
T Consensus 159 ~eG~I~~i~-W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 159 GEGPIHSIK-WRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred CccceEEEE-ecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 456677664 4578888887666 699999888877766433221 14457787777665543333
No 296
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.3e-06 Score=61.58 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=59.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEE-EEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+.|+|.-.+||.+..+|++-+..+. .+.+..+.-+...++ +++|.|||+.+++|-.||+|++.|......
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4689999999999999999999988 556777775666666 999999999999999999999999975433
No 297
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.42 E-value=2.4e-06 Score=56.42 Aligned_cols=107 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeee----eeec------------cCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQ----TRSE------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
.|+|. -+.++-++..|+|++.|++....- +.++ .--..|..+.|+++|+++++-+. -+|++|
T Consensus 220 EFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~w 298 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLW 298 (433)
T ss_pred ccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEE
Confidence 46774 456677778999999999853211 1111 11236889999999999998765 489999
Q ss_pred Ecccccccccccccccc------------cc----eeEeeecCCCEEEEecCCCcEEEEecc
Q 031924 65 SWGYFKDCSDRFVGLSP------------NS----VDALLKLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~------------~~----v~~~~~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
|+....+.+.+++. |. +. ..|.++-++..+++|+....+++++..
T Consensus 299 D~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 299 DLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eccccCCcceEEee-hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 98544455555443 32 12 223446677799999999999999954
No 298
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.39 E-value=8e-06 Score=56.70 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=82.6
Q ss_pred eeecCcceEEEE---cCC-CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGT---SGD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.|+|+++.++.. ... ..+.++++++++....+. ..+.-...+|+|||++++ +...||...||-+...++...++
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 478887765544 223 468899999886544433 333445668999998875 55677766666443333444444
Q ss_pred ccccccceeE--eeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 77 VGLSPNSVDA--LLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 77 ~~~~~~~v~~--~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. ...+.. ..+|+|+.++..+. .| .|.++++..+.. +.+...... -..-.|+|||++++..+.
T Consensus 278 t~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 278 TN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCCCCEEEEEec
Confidence 32 223332 23889998876654 44 455557665544 333333331 226789999999987763
No 299
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.39 E-value=5.5e-05 Score=42.32 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=66.7
Q ss_pred EEEEEEEe-C---CCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeee
Q 031924 40 LTSVVLMK-N---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 40 v~~~~~~~-~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
|+++++.. + .+.|++|+.|..|++|+- ...+..+.. .+.+..+....+..++.+..+|+|-+|+-. .+ +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-~R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDRS-QR-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeCc-ce-e
Confidence 56666654 2 367999999999999984 366666654 567888886667889999999999999862 22 3
Q ss_pred eeccCCCCcceeEEEE-cC--Cc-cEEEeccccccc
Q 031924 116 QPIAEHSEYPIESLGI-AS--VL-CFINSGFLSLNV 147 (150)
Q Consensus 116 ~~~~~~~~~~i~~~~~-~~--~~-~~l~s~~~~~~v 147 (150)
..++.... +.++++ .. || .-|++|-.+|.|
T Consensus 75 WRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 WRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeE
Confidence 33322222 444443 33 33 357788777765
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.2e-05 Score=56.24 Aligned_cols=124 Identities=11% Similarity=0.089 Sum_probs=79.1
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEccccc---ccccccccccccceeEee-ecC
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFK---DCSDRFVGLSPNSVDALL-KLD 91 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~-~~~ 91 (150)
+.|+.++..........-.+.+...+|-|.|..+++-+ ...++++|-++... +.+.++. ....+.+. +|.
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPk 503 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPK 503 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCC
Confidence 44555544332222233456788999999999887654 33688999876332 2223332 22344455 899
Q ss_pred CCEEEEec---CCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 92 EDRVITGS---ENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 92 ~~~l~~~~---~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|+.++.+. ..|.+.++|+....+.. ....|. ..+.+.|+|.|+|+++++..+..
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEEeeehhhh
Confidence 99887764 46889999986423221 222443 37889999999999999987743
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=4.6e-06 Score=60.17 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------c-------ccccccccccccceeEee-ecCCCEEEEecC
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K-------DCSDRFVGLSPNSVDALL-KLDEDRVITGSE 100 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------~-------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~ 100 (150)
....+.|+.|+....++++|+.||.+++..+.+. + ..-+++.| |...|..+. +.+.+.+-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCC
Confidence 4557899999999999999999999999876432 0 12346678 888888777 556678888888
Q ss_pred CCcEEEEeccCCeeeeecc--CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 101 NGLISLVGILPNRIIQPIA--EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 101 dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+|-|.+|-+..+.-...+. .... .|.+++|+.||..++..-.+|+|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKS-vV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKS-VVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCcc-EEEEEEEcCCCcEEEEEEccCCE
Confidence 9999999998776444432 2223 48999999999987766555554
No 302
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=67.38 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=59.1
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCe
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 113 (150)
..|.+.++++++.|..+.|++|+.+|.+++||++. .+..++++. + . ...++.+|+..|.+++|++..-.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~--------~-~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA--------L-D-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh--------h-h-hhheeeccCcccceEEEEccccc
Confidence 67888999999999999999999999999999973 255555542 1 1 35688999999999999997655
Q ss_pred eeeec
Q 031924 114 IIQPI 118 (150)
Q Consensus 114 ~~~~~ 118 (150)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 55554
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.35 E-value=2.6e-05 Score=59.13 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=86.3
Q ss_pred eeecCcceEEEEcCCCeEEEE----EcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--------
Q 031924 2 TFAADAMKLLGTSGDGTLSVC----NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
.|-++...++.+..+|.|-+. +..... +...-.-+..|.+++||||+..++..+.++++.+-+- ..
T Consensus 82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l 159 (928)
T PF04762_consen 82 QYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPL 159 (928)
T ss_pred EeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeec
Confidence 355677788888889999988 544432 2222344678999999999999999988888877542 11
Q ss_pred ---------------cccccccccc-----------------------cccceeEee-ecCCCEEEEecC---C---CcE
Q 031924 70 ---------------KDCSDRFVGL-----------------------SPNSVDALL-KLDEDRVITGSE---N---GLI 104 (150)
Q Consensus 70 ---------------~~~~~~~~~~-----------------------~~~~v~~~~-~~~~~~l~~~~~---d---g~i 104 (150)
|+...+|.|. ..+.-..+. ..||.++++.+- . ..+
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 2222222210 000111233 558888888774 2 478
Q ss_pred EEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 105 SLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|+|+-+ |....+-..-.+ --..++|.|.|++||+.-.
T Consensus 240 RVy~Re-G~L~stSE~v~g-Le~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 240 RVYSRE-GELQSTSEPVDG-LEGALSWRPSGNLIASSQR 276 (928)
T ss_pred EEECCC-ceEEeccccCCC-ccCCccCCCCCCEEEEEEE
Confidence 899864 543333322222 2456899999999998653
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.35 E-value=2.3e-05 Score=59.34 Aligned_cols=131 Identities=13% Similarity=0.065 Sum_probs=85.6
Q ss_pred CeeecCcceEEEEcC---C---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSG---D---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~ 71 (150)
|+|..||+++++.+. . ..++||+-+ |......+...+--.+++|-|.|+++++... ...|.+|.- +|-
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr--NGL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER--NGL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec--CCc
Confidence 468899999998764 3 478999976 6666555555555678999999999988764 345666653 343
Q ss_pred ccccccc---ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCc
Q 031924 72 CSDRFVG---LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 72 ~~~~~~~---~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.-..|.- .....+..+. +.++..|+....|. |.+|...+.. ..+.+.......+..+.|+|..
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 2222321 0345667776 78899998877555 9999887654 3333332222235558888854
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=0.00012 Score=47.11 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=79.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee-
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD- 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~- 85 (150)
..+++.++..+.+..-|..+|+...+-.. ..++.+-+.- -|++++.|+.+|.+++.+.. .+.....+.. .+.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~-tGs~~w~f~~--~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVK-TGSQIWNFVI--LETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEec-chhheeeeee--hhhhcc
Confidence 35777888899999999999987754332 3344444433 47889999999999999985 4555555543 23343
Q ss_pred -EeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 86 -ALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 86 -~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
..+.+++.++..++.|+..+..|.++..++...+
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 4458899999999999999999999888777654
No 306
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.33 E-value=3.1e-06 Score=37.37 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.4
Q ss_pred eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+....+..+...+.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34555667788999999999999999999999999996
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=7.8e-06 Score=60.19 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..++.|+-...+..+|+++.+..+...-..+.+.-++ .+++.+.+|...|+|.+-|.+. -+.++++.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 34555666666788889988866554443333444443 4678999999999999999864 378888988 9888876
Q ss_pred eeecCCCEEEEecCC---------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCC-ccEEEeccccc
Q 031924 87 LLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSL 145 (150)
Q Consensus 87 ~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~ 145 (150)
+ ...|++|++++.. ..|++||++..+.+..++-+.+ ..-+.|.|. ...++.++.+|
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEeccc
Confidence 6 4567888887744 3478999998776666654433 233555553 23344444333
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.31 E-value=6.4e-05 Score=52.17 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=89.0
Q ss_pred eeecCcceEEEEc-----------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEccc
Q 031924 2 TFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGY 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~~~ 68 (150)
.|++.|++++.-- +...+.+++++...+ .......++|...+|.|.++.|++ |-.+-.+.++|++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr- 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR- 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccc-
Confidence 4677777665521 234677787774332 222255789999999999877654 4577899999986
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+....-++ +..-..+. +|.+++++.++-| |.+-+||..... +...+.+. ..+-+.|+||++++-+...
T Consensus 307 -~Nl~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 307 -GNLRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred -cceEEecC---CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 34444333 23334444 8888988886654 689999986544 33344332 2556789999999888766
Q ss_pred ccc
Q 031924 144 SLN 146 (150)
Q Consensus 144 ~~~ 146 (150)
+-.
T Consensus 380 s~k 382 (561)
T COG5354 380 SEK 382 (561)
T ss_pred Ccc
Confidence 544
No 309
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=7.6e-06 Score=58.51 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=73.5
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe-eecCCCEEEEecCCCcEEEEeccCCe---e
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---I 114 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~---~ 114 (150)
.+.--+++..+.+++.|+.-|.+++|+-........+..+ ....+..+ .+....++++|+..|.|.++.+.... .
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3444455667899999999999999995422122222223 22222223 37788899999999999999775432 1
Q ss_pred e--eec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 115 I--QPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 115 ~--~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ... +.|.. .|++++|++++..+.+|...|.|.
T Consensus 114 ~~~t~~d~~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~ 149 (726)
T KOG3621|consen 114 DYVTPCDKSHKC-RVTALEWSKNGMKLYSGDSQGKVV 149 (726)
T ss_pred eeeccccccCCc-eEEEEEecccccEEeecCCCceEE
Confidence 1 111 23455 599999999999999999988764
No 310
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.3e-05 Score=54.76 Aligned_cols=134 Identities=12% Similarity=0.159 Sum_probs=88.4
Q ss_pred CcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCE-------EEeecCCCeEEEEEcccccc-cc---
Q 031924 6 DAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-------VVCGSQSGTVLLYSWGYFKD-CS--- 73 (150)
Q Consensus 6 ~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~d~~i~i~~~~~~~~-~~--- 73 (150)
+.+.|+. +.....++-.|++.|+.+.....+.+ |+-+.+.|+.+. -+.|-.|..|.-||++..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4444444 44566788899999999888776655 666667766321 23455677888899875443 11
Q ss_pred --cccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 --DRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 --~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.+.. .....|.......++++|+.+|.||+||--..+....+++-.. +|..+..+.+|++|+..+-
T Consensus 423 q~kqy~~--k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 423 QSKQYST--KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK 491 (644)
T ss_pred ecccccc--ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc
Confidence 12222 2334455555566899999999999999733333344545444 7999999999998765443
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.28 E-value=8.7e-05 Score=50.94 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=73.4
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+..+++++.++.+..+|..+|+.+.............. .++..+++++.++.+..+|.. .++..-+... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAE-DGKELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECC-CCcEeeeecc--Cceee
Confidence 356788888899999999999988766554332222222 357788889999999999975 4555444332 12222
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
+.....+..++.++.++.++.+|.++++.+..+.
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 2111235577778889999999999988766553
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.4e-05 Score=56.55 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc-EEEEEEEeCCCEEEeecCCC-----eEEEEEccccc-----
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFK----- 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~----- 70 (150)
+|++.+..++.|+.+|.|.+++-. -+.+..++.++.. +..+....+..+|++.+.|+ .+++|+++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478888999999999999888743 3344566666655 44444444446777766553 58999986431
Q ss_pred ccc--ccccc----ccccceeEee-ecCCCEEEEecCCCcEEEE--eccCCe-eeeeccCCCCcceeEEEEcCCccE
Q 031924 71 DCS--DRFVG----LSPNSVDALL-KLDEDRVITGSENGLISLV--GILPNR-IIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 71 ~~~--~~~~~----~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~--d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
.+. .++.+ ..+.++.++. +.+-+.+++|-.+|.|..+ |+...+ ....+......||+.+++..+++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 122 11111 0244555666 6677899999999999998 442222 222222222348999999988875
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=2.3e-05 Score=54.46 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=78.2
Q ss_pred eeecCcceEEEEc-CCCe--EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTS-GDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+|||+.|+.+. .|+. |.++|+..+. ..++....+.-..-.|+|||++++ +.+..|.-.||-....+....++.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 5899999777654 5665 5556666654 333444344334678999999986 445667666665443344444444
Q ss_pred cccc-cceeEeeecCCCEEEEecC-CCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 78 GLSP-NSVDALLKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 78 ~~~~-~~v~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
. .. ....-..+|+|++++..+. +|. |.+.|+.++..++.+.. .. ......|.++|+.+...
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~-~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TY-LNESPSWAPNGRMIMFS 387 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cc-cCCCCCcCCCCceEEEe
Confidence 2 22 2223334889998887764 344 55566655543444422 12 24455667777665543
No 314
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.23 E-value=0.00015 Score=40.57 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 87 (150)
+.|++|+.|..|++|+-+ +.+..+. ..+.++++.-... ..|+-+-.+|+|-+|+-. ...-+.+. ...+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~RlWRiKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRLWRIKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---ceeeeecc--CCCeEEE
Confidence 589999999999999854 3555544 4567778777665 668889999999999852 33444444 3335665
Q ss_pred ee--cCC---CEEEEecCCCcEE
Q 031924 88 LK--LDE---DRVITGSENGLIS 105 (150)
Q Consensus 88 ~~--~~~---~~l~~~~~dg~i~ 105 (150)
.. .++ ..|++|..+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 52 222 3789999999874
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=1.1e-05 Score=52.82 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=90.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCC-----cEEEEEEEeC-CCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE-----ELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~-----~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.|+.|.+.++++ .|-.|.+|+++... .+..+++|.. -+++..|+|. -..+.-.+..|.|++.|++...-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 456666677666 78899999987532 2334445432 4788899996 445666778899999999743211
Q ss_pred c---ccc------------ccccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCC------------
Q 031924 73 S---DRF------------VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSE------------ 123 (150)
Q Consensus 73 ~---~~~------------~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~------------ 123 (150)
. ..+ .+ -...|..+. +++|+++++-. --++++||... ..++.+++.|..
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 1 111 11 122344444 66778887654 35899999875 346777654431
Q ss_pred --cceeEEEEcCCccEEEecccccc
Q 031924 124 --YPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 124 --~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.-..+.|+-|.+.+.+|+.+.+
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred ceeeeEEEEecCCcccccccccccc
Confidence 11335788889999999988765
No 316
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.22 E-value=0.00034 Score=47.53 Aligned_cols=112 Identities=7% Similarity=0.028 Sum_probs=77.0
Q ss_pred eec-CcceEEEEcCCCeEEEEEcCCCe-----eeeeecc-------CCCcEEEEEEEeCCCEEEeec----------CCC
Q 031924 3 FAA-DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEF-------SEEELTSVVLMKNGRKVVCGS----------QSG 59 (150)
Q Consensus 3 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~----------~d~ 59 (150)
|.+ +++++..+.. |.|.+.|+...+ ....+.. ..+...-++++++++++++.. ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 344 7888877766 999999965432 2221111 223444599999998888742 225
Q ss_pred eEEEEEcccccccccccccccccceeEee-ecCCC-EEEEec-CCCcEEEEeccCCeeeeec
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDED-RVITGS-ENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~l~~~~-~dg~i~~~d~~~~~~~~~~ 118 (150)
.|.++|.. ..+.+.++.. ...+..+. +++++ +|++.. .++.|.++|..+++.++.+
T Consensus 280 ~V~ViD~~-t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAK-TGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECC-CCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 79999985 4466666653 23455665 88988 777666 5788999999999988887
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.22 E-value=0.00045 Score=45.74 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=88.6
Q ss_pred Ceeec-CcceEEEEcCCCe-EEEEEcCCCeeeeeeccCCCc--EEEEEEEeCCCEEEeec-----CCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGS-----QSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-----~d~~i~i~~~~~~~~ 71 (150)
++.+| ....++.+-.-|+ ..+||..+++....+...++. .=--.|++||++|++.- ..|.|-|||....-+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35677 4556666665555 668999999887766654442 22467999999998763 358999999862224
Q ss_pred ccccccccccccee-EeeecCCCEEEEec------------------CCCcEEEEeccCCeeeeecc----CCCCcceeE
Q 031924 72 CSDRFVGLSPNSVD-ALLKLDEDRVITGS------------------ENGLISLVGILPNRIIQPIA----EHSEYPIES 128 (150)
Q Consensus 72 ~~~~~~~~~~~~v~-~~~~~~~~~l~~~~------------------~dg~i~~~d~~~~~~~~~~~----~~~~~~i~~ 128 (150)
.+..+.. +.-.-. .+..++++.|+.+. .+..+...|..+++.+.... .|.- +|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l-SiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL-SIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc-ceee
Confidence 5555553 322112 23366775555442 22234456777888776632 2433 6999
Q ss_pred EEEcCCccEEEecc
Q 031924 129 LGIASVLCFINSGF 142 (150)
Q Consensus 129 ~~~~~~~~~l~s~~ 142 (150)
++++++|..++..-
T Consensus 168 La~~~~G~V~~a~Q 181 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQ 181 (305)
T ss_pred EEecCCCcEEEEEe
Confidence 99999998776543
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.22 E-value=0.0002 Score=45.78 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=73.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-cccc--cc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLS--PN 82 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~--~~ 82 (150)
++..+++++.++.+..||..+|+.+.+...... +.... ...+..+++++.++.+..+|.. .++..-+. .. . ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETT-TSCEEEEEEE--SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccC-Ccceeeeeccc-ccccc
Confidence 567777888999999999999998876654222 11112 3345667777788899999964 45555442 22 1 11
Q ss_pred ce-eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 83 SV-DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 83 ~v-~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
.. .... ...++.++.+..++.+..+|+++++.+.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 11 1111 33477888888899999999999998776644
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.7e-06 Score=63.71 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-C-eEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G-TVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+-+.+.|+.|+-.|.|++|++.+|.......+|...++-+.-+.+|..+.+.+.- . -..+|++...+...+.|.+
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 4688889999999999999999999998888899999999999989898877665533 2 4568998765566666654
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC---CCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
...+. + +.....-+.|+......+||++++..+.++-.. ..+.-+.+.|+|+..++.--|.=+.|
T Consensus 1187 --d~~vk-F-sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDv 1254 (1516)
T KOG1832|consen 1187 --DKAVK-F-SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDV 1254 (1516)
T ss_pred --cceee-h-hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeee
Confidence 11121 1 111222233444467889999998877663211 11234677899988887765544443
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.19 E-value=3e-05 Score=53.69 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=87.2
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~ 75 (150)
.+|.|.++.+++.+ .+-.+.++|++.. ... ...+..-+.+.|+|.+++++.++-| |.+-+||....-.+...
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence 36899888777655 5788999999866 332 3344555788899999999887654 78999997533344445
Q ss_pred cccccccceeEeeecCCCEEEEec------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGS------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+.+ .+.-.|-++|+++++.+.. .|..+.+||+...... ..+.+.|.|.|++..+.+...
T Consensus 357 ~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 357 FNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 554 3333444588888877654 4677899998543221 244567777777666555443
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.16 E-value=0.00065 Score=44.99 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred eeecCcceEEEEc-----CCCeEEEEEcC-CCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
.|++||++|++.- ..|.|-|||.. +.+.+..+..+--....+.+.|||+.|+++
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 5899999999863 45899999998 445566666555555677788888776665
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-05 Score=54.05 Aligned_cols=91 Identities=7% Similarity=0.050 Sum_probs=65.4
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccccccccceeEee-ec-CCCEE
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRV 95 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l 95 (150)
+++++..+.+....+..+...|.+++|+|..+ .+..++.+.+|++.|+++ ......+.. + ..+.+++ .. +.+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a-~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA-Y-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec-c-CCceeeeeccCCccee
Confidence 44444444444445556667899999999866 678899999999999974 356666665 5 4444444 33 45678
Q ss_pred EEecCCCcEEEEeccCC
Q 031924 96 ITGSENGLISLVGILPN 112 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~~ 112 (150)
..|-.+|.|.+||++..
T Consensus 252 YaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQP 268 (463)
T ss_pred EEeccCceEEEEEccCC
Confidence 88889999999999753
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.5e-05 Score=54.68 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee-Eee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
...+.-+.|+|.-..+|.+..+|.+.++.+. + +.+-+++. +...++ +++ .++|+.++.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3467789999999999999999999999875 4 55556664 455555 777 89999999999999999999998887
Q ss_pred eeeccCCCCcceeEEEEcC
Q 031924 115 IQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~ 133 (150)
+.....-...+|..+-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663332333588888864
No 324
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.02 E-value=1.7e-05 Score=57.51 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=91.4
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccc
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.|+|. ..+-++......-.+|++... .....+.+|...++.+.|+|.. ..+++++.|..+..||++........
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 35553 234444434445667887653 2334566888999999999874 46789999999999999866555554
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcC-CccEEEeccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v 147 (150)
+.. .......+. +.....+.+.+....|++||.+.+. ++..++.|.. .+..++|.. ....+.+++.++.|
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCce
Confidence 443 223333333 4333344445667789999998654 6777777766 477777764 23345555555543
No 325
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0019 Score=44.70 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=90.3
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccc--
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~-- 74 (150)
++++|+++.+..+.. ++++.+.|..+++.......-..+ ..+++.|+|++++... .++.+.++|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468888887777654 689999999998877664433344 8999999999776665 7789999996422 2221
Q ss_pred ---ccccccccceeEeeecCCCEEEEecCC---CcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEec
Q 031924 75 ---RFVGLSPNSVDALLKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ---~~~~~~~~~v~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.... ...+..-...+++..+...... +.+...|..++..... ...... ....+.++|+|+++-..
T Consensus 199 ~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 199 VGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEE
Confidence 1222 2333333447788765554433 5888899888776554 222222 25567889998876654
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=9.7e-05 Score=53.14 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=82.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeee-eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc----ccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----DRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----~~~ 76 (150)
+++..+++++.|+..|.+++|+-..++.... ..+..+.+.....+++..+++.|+..|.|.++.+....... ..+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 3456788999999999999999877754322 22345567777888888889999999999999875322111 112
Q ss_pred -ccccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 77 -VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 77 -~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+. |...|+++. ++++..+++|...|.|..-.+.+
T Consensus 120 d~~-~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKS-HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccc-CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23 678899998 88999999999999999887765
No 327
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.97 E-value=0.0015 Score=42.26 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=77.8
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEE-eCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
.|.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++. ++.+...+ +.++|... ++......
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~-g~~~~~~~~~ 79 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDT-GKVTVLADLP 79 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTT-TEEEEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCC-CcEEEEeecc
Confidence 5787 66677776689999999998886543 22222 6788888 5554 55554544 45558753 22221111
Q ss_pred -cc-cccceeEee-ecCCCEEEEecCC--------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE-eccccc
Q 031924 78 -GL-SPNSVDALL-KLDEDRVITGSEN--------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN-SGFLSL 145 (150)
Q Consensus 78 -~~-~~~~v~~~~-~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~~~ 145 (150)
.. .....+.+. .++|++.++.... |.+..++.. ++..... ..-. ..+.++|+|+++.|. +-+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~-~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG-FPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES-SEEEEEEETTSSEEEEEETTTT
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc-cccceEECCcchheeecccccc
Confidence 10 123344455 7888877766543 457777776 4433333 2223 377899999998654 444443
Q ss_pred c
Q 031924 146 N 146 (150)
Q Consensus 146 ~ 146 (150)
.
T Consensus 157 ~ 157 (246)
T PF08450_consen 157 R 157 (246)
T ss_dssp E
T ss_pred e
Confidence 3
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.93 E-value=0.0009 Score=46.36 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=77.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc-ee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS-VD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-v~ 85 (150)
+..++.++.++.+..+|..+++.+.+... .....+ ...+..++.++.+|.+..+|.. .++..-+... .... ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~--~~~~~~vy~~~~~g~l~ald~~-tG~~~W~~~~-~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF--AVDGGRIYLVDQNDRVYALDTR-GGVELWSQSD-LLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc--EEECCEEEEEcCCCeEEEEECC-CCcEEEcccc-cCCCccc
Confidence 45566777889999999999987654432 111122 2346678888899999999985 3443322211 0111 11
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCccee-EEEEcCCccEEEeccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~~~~v 147 (150)
.. ...+..++.++.+|.++..|..+++.+........ .+. ...+ .++ .|..++.++.+
T Consensus 330 sp-~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~-~~~-~l~v~t~~G~l 388 (394)
T PRK11138 330 AP-VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV-ADD-KLLIQARDGTV 388 (394)
T ss_pred CC-EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE-ECC-EEEEEeCCceE
Confidence 11 11356778889999999999999988776643322 122 2222 233 45555666554
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00035 Score=48.12 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=91.8
Q ss_pred eeecCcceEEEEcC-CCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeC-C-CEEE-eecCCCeEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-G-RKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~-~-~~l~-~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
+.+.++.++.+.+. |..++++|++.-..+.- +..-.+.+. ...++. . ..++ +.-.++.+.++|-.........
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 34567778888676 99999999987654322 222222222 122222 1 1333 3346799999997644445555
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccC------Ceeeeec---------cCCCCcceeEEEEcCCccEEE
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP------NRIIQPI---------AEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+++.|..+|.++. .+.+..+++....|.|.-|.... .+....+ ..... -..++.|+|+|..++
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSPDGAQIS 217 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEccccCccc
Confidence 5555899999988 77888899988899999998762 1111111 12223 277899999999988
Q ss_pred eccccccc
Q 031924 140 SGFLSLNV 147 (150)
Q Consensus 140 s~~~~~~v 147 (150)
+-+.+..|
T Consensus 218 tl~~DrkV 225 (558)
T KOG0882|consen 218 TLNPDRKV 225 (558)
T ss_pred ccCcccEE
Confidence 77665544
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.87 E-value=0.0022 Score=41.05 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=67.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc----------EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE----------LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++..++.+..++.|..+|.++|+.+......... ...-....++ .++.++.++.+..+|.... +..-
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg-~~~w- 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG-EKLW- 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT-EEEE-
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC-CEEE-
Confidence 4667888878999999999999987666543322 1122222234 6777777775333387643 3222
Q ss_pred cccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeee
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQ 116 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 116 (150)
.. ............+..++.++.++.+..||+++++.+.
T Consensus 198 -~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 198 -SK-PISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -EE-CSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -Ee-cCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22 1222333335567777777799999999999998764
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00011 Score=54.37 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
++|+|..-.|+.+-+-|.+.+|...+.+.......|..++..+.|+++|..++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799998899999999999999988887777777899999999999999999999999999999764
No 332
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=7.9e-05 Score=54.44 Aligned_cols=130 Identities=10% Similarity=0.040 Sum_probs=91.5
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe---------ecCCCeEEEEEccccc-cccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC---------GSQSGTVLLYSWGYFK-DCSDRFVG 78 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------~~~d~~i~i~~~~~~~-~~~~~~~~ 78 (150)
+++.|...|+|.++|+.++.....+.-|...|.++.|-....++-. |..-+.+.+-|+++.- +..+-..+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 6788999999999999999877778889999999999766554322 2223456667776332 11221222
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccEEE
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCFIN 139 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 139 (150)
..+.+|..+. +.-+++++..-.+..+.+||+++...++.....-. .++.+.|+ |.-.-+.
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P-~it~leWsl~~~~si~ 580 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP-LITVLEWSLPKHPSIK 580 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC-cEEEEeecccCCCCcc
Confidence 1467788887 88899999999999999999988877766643322 28888998 4433333
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.84 E-value=0.0016 Score=49.99 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=84.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc--cc-----------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GY----------- 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~--~~----------- 68 (150)
.|..+.+.++.+..+|.|.+-|.++... .....-+..|.+++|+||+..++..+..+++.+-+- .-
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 3455777888888999999988877632 233345678999999999999988888777765331 00
Q ss_pred ---------cccccccccccccc---------------------ceeEee-ecCCCEEEEe-----cCCCcEEEEeccCC
Q 031924 69 ---------FKDCSDRFVGLSPN---------------------SVDALL-KLDEDRVITG-----SENGLISLVGILPN 112 (150)
Q Consensus 69 ---------~~~~~~~~~~~~~~---------------------~v~~~~-~~~~~~l~~~-----~~dg~i~~~d~~~~ 112 (150)
+++....|.+ ..+ .-+.+. .-+|.++++. .....|++||-. +
T Consensus 154 ~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 1121112221 100 011233 4477788773 333789999976 3
Q ss_pred eeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 113 RIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
. +.........--.+++|-|.|..+|+-.-
T Consensus 232 ~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 232 A-LNSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred h-hhcccCcccccccceeecCCCCeEeeeee
Confidence 2 23222222212557899999998886443
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00019 Score=52.49 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=70.5
Q ss_pred CcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
+.+.|++++ +++|+-|+.+|.+++++.. +.. .+... |... ..+|.++++|+.||.|.+..+.+.+....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~--~~~-~~~~~-~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ--GNP-KTNFD-HSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC--Ccc-ccccc-cccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 345566654 6789999999999999874 333 22223 3322 56899999999999999999888776666
Q ss_pred ccCCCCcceeEEEEcCC-----ccEEEeccccc
Q 031924 118 IAEHSEYPIESLGIASV-----LCFINSGFLSL 145 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~-----~~~l~s~~~~~ 145 (150)
+..+ . |+.+++++|+ .+.+++||..|
T Consensus 109 ~df~-r-piksial~Pd~~~~~sk~fv~GG~ag 139 (846)
T KOG2066|consen 109 YDFK-R-PIKSIALHPDFSRQQSKQFVSGGMAG 139 (846)
T ss_pred EecC-C-cceeEEeccchhhhhhhheeecCcce
Confidence 6433 3 6999999998 56788888875
No 335
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.77 E-value=0.0004 Score=45.84 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=66.4
Q ss_pred cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--cccccc-----cceeEee-ec-CCCEEEEecCCCcEE
Q 031924 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGLSP-----NSVDALL-KL-DEDRVITGSENGLIS 105 (150)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~-----~~v~~~~-~~-~~~~l~~~~~dg~i~ 105 (150)
.|..-++++.++.|...++++ .|-.|.+|++......... ++. |. .-|++.- +| ..+.++-.++.|.|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 455678889999988888776 5678999988643322211 111 21 2233332 33 456788888999999
Q ss_pred EEeccCCe------eeeecc----------CCCCcceeEEEEcCCccEEEeccc
Q 031924 106 LVGILPNR------IIQPIA----------EHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 106 ~~d~~~~~------~~~~~~----------~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+-|++... .+.... +-.. +|..+.|+++|+++++-..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy 300 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY 300 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc
Confidence 99997321 111111 1112 4888999999999997653
No 336
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=3.9e-05 Score=54.12 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred EcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeC--CCEEEee-cCCCeEEEEEccccccccccc-----cccccc
Q 031924 13 TSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFKDCSDRF-----VGLSPN 82 (150)
Q Consensus 13 ~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~~~-~~d~~i~i~~~~~~~~~~~~~-----~~~~~~ 82 (150)
.+.|+-|++||.--++.+.... ..++.+.-+..-++ ...++.| +...+++++|.+.- .....+ ++ ...
T Consensus 800 ~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~-Pna 877 (1034)
T KOG4190|consen 800 ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPG-PNA 877 (1034)
T ss_pred eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCC-Cch
Confidence 4568889999998887654332 22333333333333 4444454 67789999998633 322222 23 334
Q ss_pred ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC
Q 031924 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 122 (150)
.+.++. .+.|++++.+-.+|.|.+.|.++++.+..+...+
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc
Confidence 566777 7899999999999999999999999887665443
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.0046 Score=44.97 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=82.2
Q ss_pred eecCcceEEEEc-CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC------------------------
Q 031924 3 FAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (150)
Q Consensus 3 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 57 (150)
++||++.+...+ ..+.+.+.|.++.+...++.-. +...-+.++++|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 456777664443 4677888888887666554432 23456677778777766642
Q ss_pred ----------------CCeEEEEEccc----ccccccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCee-
Q 031924 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRI- 114 (150)
Q Consensus 58 ----------------d~~i~i~~~~~----~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~- 114 (150)
++.|.+.|.+. ..+....++. +.....+. +|+|+++++++. +.++.++|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23455555442 0122233322 22223344 889998877664 88999999976442
Q ss_pred -----------eeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 115 -----------IQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 115 -----------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.....- +......+|+++|....|-..+..|
T Consensus 357 ~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 357 FDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred hhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeeccee
Confidence 222222 2235567899999877766655443
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.0034 Score=40.72 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=48.1
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.+++.|+..|.+.+.+.++|.....+...+.--......+++..+.+|+.|++.+..|.+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 567889999999999999999766555433221122344678999999999999999998754
No 339
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.0068 Score=40.65 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=76.4
Q ss_pred eecCcceEEEEcC-----------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccc-c
Q 031924 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGY-F 69 (150)
Q Consensus 3 ~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~ 69 (150)
..|+|.+.+.... -|.+..+|. .+...+.+..+-..-+.++||||++.++... ..+.+..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566665555433 133333343 3445555555456678999999998776664 457888887741 1
Q ss_pred cccc-----cccccccccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccE
Q 031924 70 KDCS-----DRFVGLSPNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCF 137 (150)
Q Consensus 70 ~~~~-----~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 137 (150)
+... ..+.. .+.....++ ..+|.+.+++..+| .|..|+.+ ++.+..+.-... .+++++|- |+.+.
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~ 269 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNT 269 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCE
Confidence 1111 11111 123333333 56677776555554 99999997 888877755544 37778885 44443
No 340
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.65 E-value=0.0034 Score=43.53 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=70.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC--cEE-------EEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELT-------SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~-------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.+..+++++.++.+.-+|.++|+.+.+...... ... .-...-++..++.++.++.+..+|.+ .++..-+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE-DGEVAWQT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-CCCCcccc
Confidence 356777788899999999999988765543221 000 00011135677888899999999975 45655544
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. . ..+.+---..+..++.+..++.++.+|..+++.+....
T Consensus 147 ~~-~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 147 KV-A-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cC-C-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 33 2 22221111134567778889999999999998776653
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.63 E-value=1.5e-05 Score=56.77 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=79.9
Q ss_pred eeec-CcceEEEEc----CCCeEEEEEcCCC--eee--eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 2 TFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 2 ~~~~-~~~~l~~~~----~d~~i~i~d~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+|++ |.+.|++|- .|..+.|||+.++ .+. ..+. +......+++|-.+.+.+.+|.....+.++|++....
T Consensus 109 AwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 109 AWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred ccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh
Confidence 5555 556666663 4677999999876 111 1122 2344566889998899999999999999999973322
Q ss_pred cccccccccccceeEee-ec-CCCEEEEecCCCcEEEEe-ccC-CeeeeeccCCCC---cceeEEEEcCCc
Q 031924 72 CSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLGIASVL 135 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d-~~~-~~~~~~~~~~~~---~~i~~~~~~~~~ 135 (150)
....+. +..+..+. .| .++++++-. ||.|.+|| .+. ..+++.+...+. ..+..++|+|..
T Consensus 189 ~~~svn---Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 189 SVSSVN---TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhh---hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 222222 22233333 44 677887655 99999999 433 223343322221 128889999854
No 342
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00032 Score=53.03 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=66.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
..++.|+..|++-..|+...- +...-+...++|++++|+.+|..+..|-.+|.|.+||+. .++..+.+.. +..+.+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeee-cCCccce
Confidence 357778888899888877641 112223345699999999999999999999999999985 4466666665 5555554
Q ss_pred ee----ecCCCEEEEecCCCc
Q 031924 87 LL----KLDEDRVITGSENGL 103 (150)
Q Consensus 87 ~~----~~~~~~l~~~~~dg~ 103 (150)
+. ..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 33 334556777777776
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00015 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=27.2
Q ss_pred cccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
..+.. |...+.++. .++++.+++++.|+.+++|+
T Consensus 6 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34445 777888887 66778999999999999996
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0099 Score=41.19 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=86.5
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.++.++.++.. ..++.+.+.|..+.+.......-. ....++++++++.+.++.. ++++.+.|... .+......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence 456666655544 456899999988776665544322 5678999999988877765 68888888653 34444443
Q ss_pred cccccceeEeeecCCCEEEEe-cCCCcEEEEeccCCeeee-----eccCCCCcceeEEEEcCCccEEE
Q 031924 78 GLSPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQ-----PIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. ...+......++|..+... ..++.+.+.|.......+ ..... . ....+.++|+|.++-
T Consensus 158 v-G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~y 222 (381)
T COG3391 158 V-GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVY 222 (381)
T ss_pred c-CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEE
Confidence 3 3344333448888855554 478899999987665553 12222 1 255688999998543
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00059 Score=51.66 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC--c
Q 031924 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (150)
Q Consensus 48 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~ 124 (150)
.+..++.|+..|.+...|+...-.....=.. ...+|++++ +.+|..++.|-.+|.|.+||+..++.++.+..|.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4667889999999999988532111111122 357788988 77999999999999999999999888888765543 2
Q ss_pred ceeEEEEcCCccEEEeccccc
Q 031924 125 PIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 125 ~i~~~~~~~~~~~l~s~~~~~ 145 (150)
.+-.+.+..++..+.++..-|
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC
Confidence 344455556666676666555
No 346
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00031 Score=48.36 Aligned_cols=140 Identities=13% Similarity=-0.011 Sum_probs=93.2
Q ss_pred CcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccc-cccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~-~~~~~~~~ 80 (150)
-.+++.+++-||+++.|--..- +.+.....|...+.+++.+.++..+.+.+. |..+++||+...... ...+.. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-L 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-C
Confidence 3568899999999999975441 234555677788899999999999999776 999999998754322 112222 2
Q ss_pred ccceeEeeecCC---CEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALLKLDE---DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..+....++.. ..-++.-.++.+.++|-...- ....-..|.. ||..+.+.+-+..+.+...+|-|
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMV 168 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeecccccee
Confidence 333433332221 233344467899999976432 3333345656 89999999998888887755543
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.005 Score=41.53 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=61.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCe-eeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-cccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNS 83 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~ 83 (150)
+..|+++ .++.|.+|++...+ ....... ....+.++.. .++++++|+.-..+.++.++........+. ...+..
T Consensus 98 ~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 3445555 34699999998877 4432222 2224555544 467999999888888886643223222221 103445
Q ss_pred eeEeeec-CCCEEEEecCCCcEEEEecc
Q 031924 84 VDALLKL-DEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 84 v~~~~~~-~~~~l~~~~~dg~i~~~d~~ 110 (150)
++++... +++.++.+..+|.+.++...
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666533 66799999999999998765
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00026 Score=52.53 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=73.7
Q ss_pred EEEEEEEeCCCEEEeec----CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 40 LTSVVLMKNGRKVVCGS----QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
.+-..|+|...+|++++ ..|++.||-- .+...... . .+-.+++++ +|..-.|+.|..-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad--tGEPqr~V-t-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD--TGEPQRDV-T-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec--CCCCCccc-c-cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34567888888887775 4588998842 23322222 2 233455666 66767788888899999999877666
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
-.....|+. +|..+.|||+|..+.++..-+.|
T Consensus 94 htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 94 HTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSV 125 (1416)
T ss_pred eeeccCCCC-CceeEEecCCCCeEEEcCCCcee
Confidence 555556766 79999999999999998876654
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.012 Score=39.70 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=73.8
Q ss_pred CeEEEEEcCCC-----eee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec
Q 031924 17 GTLSVCNLRKN-----TVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL 90 (150)
Q Consensus 17 ~~i~i~d~~~~-----~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 90 (150)
|.|.++++... +.. .......++|.+++-- ++. ++++ .++.+.+|++....+.........+..+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 89999999884 221 1123446788888766 344 4444 347999999964431222211102234444443
Q ss_pred CCCEEEEecCCCcEEEEeccC-CeeeeeccC-CCCcceeEEEEcCCccEEEecccccccc
Q 031924 91 DEDRVITGSENGLISLVGILP-NRIIQPIAE-HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+++++.|.....+.++..+. .+.+..+.. .....+.++.|-++++.++.+...+++.
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 356888888878788774433 232333322 1122488888886667888888888764
No 350
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.00061 Score=42.96 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=62.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEE-EEEeCCCEEEeecCCCeEEEEEcccccccccccccccc-cc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSV-VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~ 83 (150)
+..+++|+.+|.|.+|.......+. ....-...+.++ .--.++.+..+++.||.++.|+.. ..+.+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeeeecc-ccCCC
Confidence 4578889999999999887322221 111222233332 222345678889999999999985 4454444434 44 33
Q ss_pred eeEee-ecCCCEEEEe--cCCCcEEEEeccC
Q 031924 84 VDALL-KLDEDRVITG--SENGLISLVGILP 111 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~--~~dg~i~~~d~~~ 111 (150)
..... ...++.+... +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33333 5556666666 7777888887754
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.48 E-value=0.003 Score=48.57 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=71.0
Q ss_pred CeeecCcceEEEE-----cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~ 72 (150)
|.|.-||+++++. .+...|++||-+ |..........+.-.+++|-|.|..+++-. .|+.|.+|.-. |-.
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLR 277 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--Ccc
Confidence 4677899999883 333799999988 654444445555667899999999888753 45678888743 322
Q ss_pred cc----ccccccccceeEee-ecCCCEEEE---ecCCCcEEEEeccCC
Q 031924 73 SD----RFVGLSPNSVDALL-KLDEDRVIT---GSENGLISLVGILPN 112 (150)
Q Consensus 73 ~~----~~~~~~~~~v~~~~-~~~~~~l~~---~~~dg~i~~~d~~~~ 112 (150)
-. .++. ....+..+. +.++..|+. ......|++|...+.
T Consensus 278 hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 278 HGEFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 22 2222 233366666 667777777 444556999987653
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.44 E-value=0.0038 Score=46.76 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=67.2
Q ss_pred eEEEEcCCCeEEEEEcCCCe-eeeeec----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNT-VQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
.-+.|-.++.+..||.+-.. .+.... ......+|++-..+| +|++|+.+|.||+||- ...+....+++ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC-CCCC
Confidence 45566678899999988632 221111 223456777666555 6999999999999994 33345555666 7789
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEec
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~ 109 (150)
|..+. ..+|+++++.+ +..+.+++.
T Consensus 621 I~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEee-cceEEEEEE
Confidence 99998 88999988766 456677764
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.35 E-value=0.0011 Score=31.28 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
...|.+++|+|....++.++.+|.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.27 E-value=0.028 Score=39.28 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=61.0
Q ss_pred eeecCcceEEEE-cCC----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----------CeEEEEE
Q 031924 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~~ 65 (150)
.++|++++++.+ +.. .+++++|+++++.+...... .....+.|.++++.|+-...+ ..|+.|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 578999988865 222 45999999999766432111 112349999998877654422 2467777
Q ss_pred ccccccc-ccccccccccc--eeEee-ecCCCEEEEecC---C-CcEEEEeccCC
Q 031924 66 WGYFKDC-SDRFVGLSPNS--VDALL-KLDEDRVITGSE---N-GLISLVGILPN 112 (150)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~--v~~~~-~~~~~~l~~~~~---d-g~i~~~d~~~~ 112 (150)
+.+.... .-.+.. .... ...+. +.++++++.... + ..+++.++...
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 6533221 112222 2222 22333 778887765432 2 35677787654
No 355
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.27 E-value=0.029 Score=38.71 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=71.0
Q ss_pred CeeecCcceEEEEc-----------CCC-eEEEEEcCC--Cee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~~~~~l~~~~-----------~d~-~i~i~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
|+|+++++++++.. ..+ .|.+++-.. ++. ...+.......+.+++.++| +++++.....++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEe
Confidence 57889998887753 223 777776543 332 22333334456889999888 4444444433343
Q ss_pred Eccccc----c---ccccccccc----ccceeEee-ecCCCEEEEecCC-------------------CcEEEEeccCCe
Q 031924 65 SWGYFK----D---CSDRFVGLS----PNSVDALL-KLDEDRVITGSEN-------------------GLISLVGILPNR 113 (150)
Q Consensus 65 ~~~~~~----~---~~~~~~~~~----~~~v~~~~-~~~~~~l~~~~~d-------------------g~i~~~d~~~~~ 113 (150)
|....+ + ....+.. . ......+. .++|.+.++-+.. |.|.-++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 442211 1 1112221 1 11233444 6777766654421 345555554443
Q ss_pred eeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 114 IIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
. ..+..... -...++|+|+|+++++-.
T Consensus 176 ~-e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 L-RVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred E-EEEecCcC-CCccceECCCCCEEEEcc
Confidence 2 23322112 256789999999887643
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.034 Score=39.02 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=34.6
Q ss_pred eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
.|.+|+.. |+.+..+.-..+.+.++.|..+ ..|++...||++++||+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 47788765 4455555544488999999875 45667779999999987
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.23 E-value=0.023 Score=40.75 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=62.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee------------------cCCCeEEEEEccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG------------------SQSGTVLLYSWGYFK 70 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~i~~~~~~~ 70 (150)
.++.++.+|.+..+|.++|+.+....... ..++.+| ..++.+ ..+|.+..+|.. .+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CC
Confidence 57778889999999999998876543210 1122222 222221 235667777764 33
Q ss_pred cccccccccc--c------cce-eEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 71 DCSDRFVGLS--P------NSV-DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 71 ~~~~~~~~~~--~------~~v-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
+.+-+... . . ... ..-....+..++.++.||.++.+|.++++.+...+.
T Consensus 377 ~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 377 KVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 43332221 1 0 111 111123567888899999999999999998877654
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.22 E-value=0.024 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=38.0
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
|+|+|+.+ ++++....+.|..++.+ |+.+.++.-. .+....+++..++.++++.-.++.+.++++
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 57899755 66666788888888864 5555544322 245566666665655555545566665554
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.20 E-value=0.034 Score=38.15 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=75.1
Q ss_pred CeeecCcceEEEE--cC---CCeEEEEEcCCCeeeeeec-cCC---CcEEEEEEE-eCC-CEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGT--SG---DGTLSVCNLRKNTVQTRSE-FSE---EELTSVVLM-KNG-RKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~---d~~i~i~d~~~~~~~~~~~-~~~---~~v~~~~~~-~~~-~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.|.++++.++.. .. ...+.++|..+++...... ... +......+. +++ .++.....+|.-++|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3577887733332 22 2345567777665432221 111 222345554 554 44555557887666655434
Q ss_pred cccccccccccccceeEee--ecCCC-EEEEecCCC----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 70 KDCSDRFVGLSPNSVDALL--KLDED-RVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+.....+.. ....|..+. ..+++ +.+++..++ .++..++..+..++.+...... -..+.|||+|++++-..
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-TEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-ceEEEECCCCCEEEEEE
Confidence 444445554 455665544 45544 444555432 4555566623444555444332 24899999999988666
Q ss_pred ccccc
Q 031924 143 LSLNV 147 (150)
Q Consensus 143 ~~~~v 147 (150)
...++
T Consensus 347 s~~~~ 351 (353)
T PF00930_consen 347 SGPDT 351 (353)
T ss_dssp ESSSS
T ss_pred cCCCC
Confidence 55443
No 360
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.00053 Score=51.31 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=63.6
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCC--cEEEE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENG--LISLV 107 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg--~i~~~ 107 (150)
..+..+....+|++|+.+.++|++|+..|.|++|++. .|.......+ |..+++-+- +.+|..+++.+.-. -..+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-Cccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence 4455677889999999999999999999999999985 5677778888 999998887 67887766655433 46789
Q ss_pred eccC
Q 031924 108 GILP 111 (150)
Q Consensus 108 d~~~ 111 (150)
++.+
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 8854
No 361
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.062 Score=40.48 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=72.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC----CeeeeeeccCCCcEEEEEEEeCCCE-EEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+.+.+-+.+++|-.+|.|..+.-.- +..........++|+.+.+..+++. +++++. ..|.+|.+..........
T Consensus 132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceeee
Confidence 4556678899999999999885321 2122223344679999999988877 334433 468899886332223445
Q ss_pred ccccccceeEeeecCCCE-EEEecCCCcEEEEeccCCeeeeecc
Q 031924 77 VGLSPNSVDALLKLDEDR-VITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. |.....|-...++.. +++++ +..+.+|+....+.-..+.
T Consensus 211 d~-~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 211 DN-NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cc-CCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 55 666677766333333 54443 4578999987655555554
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.08 E-value=0.037 Score=36.36 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=71.5
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc---------
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--------- 74 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--------- 74 (150)
...++.|+.|..+| +.+++........... ....|..+...++-+.+++-+ |+.+.++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34678888998888 8999983322222222 223399999999877776664 49999999864322211
Q ss_pred -----ccccccccceeEee---ecCCCEEEEecCCCcEEEEeccCC-----eeeeeccCCCCcceeEEEEcCCc
Q 031924 75 -----RFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 75 -----~~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.+. ....+.... ...+...+.......|.+|..... +..+.+.- ++ .+..++|.++.
T Consensus 81 ~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~-~~~~i~~~~~~ 150 (275)
T PF00780_consen 81 RSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PD-PPSSIAFLGNK 150 (275)
T ss_pred cccccccc--ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CC-CcEEEEEeCCE
Confidence 111 122233332 233333444444558888876542 34455433 24 48888888433
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.041 Score=36.44 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred CeeecC-cceEEEEcCCCe-EEEEEcCCCeeeeeeccCCC--cEEEEEEEeCCCEEEeecC-----CCeEEEEEcccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~~~~ 71 (150)
|+|+|. ..-++.+-.-|+ ..++|....+....+...++ ..---.|+|||.+|...-. -|.|-+||.+..-+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 456664 334555545454 45788877655444333222 2334468999999976533 27899999874335
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCC-------C-----------cEEEEeccCCeeeeeccCC---CCcceeEE
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSEN-------G-----------LISLVGILPNRIIQPIAEH---SEYPIESL 129 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d-------g-----------~i~~~d~~~~~~~~~~~~~---~~~~i~~~ 129 (150)
.+..+.. |.-.-..+. ..||+.++.+... | .+.+.|..++..+.+..-. ...++..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 5566665 543333344 7788888766431 1 2333454455554433211 11358999
Q ss_pred EEcCCccEEEeccc
Q 031924 130 GIASVLCFINSGFL 143 (150)
Q Consensus 130 ~~~~~~~~l~s~~~ 143 (150)
+..+||+..+.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 99999998776544
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.02 E-value=0.072 Score=38.69 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=32.2
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
.+.+++.+..+|.++.+|.++++.+..+.......-.=+.|.-+|+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 45677888889999999999999888775443321222344456654
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.98 E-value=0.055 Score=39.82 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=70.6
Q ss_pred eeecCcceEEEEc------CCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------------CeE
Q 031924 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (150)
Q Consensus 2 ~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (150)
+++|+++.++..- .|. .|.+++.. +.. ..+.. ....+.-.|+|+|+.+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789998887664 243 44455542 222 22222 1237788999998877766432 222
Q ss_pred EEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEE---EeccCCe-ee---eeccCCCCcceeEEEEcC
Q 031924 62 LLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISL---VGILPNR-II---QPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~---~d~~~~~-~~---~~~~~~~~~~i~~~~~~~ 133 (150)
.+.+++ .+...+ . ....|..+. +++|..++... ++.|++ -....+. .+ ..+.......+..+.|.+
T Consensus 433 ~~~~vd-~ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVD-ASAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEecc-Cchhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 222332 111111 1 244577777 99999887655 477777 3333343 11 112221221367899999
Q ss_pred CccEEEe
Q 031924 134 VLCFINS 140 (150)
Q Consensus 134 ~~~~l~s 140 (150)
++.+++.
T Consensus 507 ~~~L~V~ 513 (591)
T PRK13616 507 GDSLVVG 513 (591)
T ss_pred CCEEEEE
Confidence 9986643
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.97 E-value=0.072 Score=37.79 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
|.+|...+.+ .|.+||+++++.+.++... .|..+.|+++|.+++..+.+ .+.+++.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 6666666444 8999999999988887743 48999999999999888755 5666664
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.95 E-value=0.062 Score=37.55 Aligned_cols=108 Identities=24% Similarity=0.275 Sum_probs=63.7
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc----------------------------c--------------cc
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----------------------------D--------------RF 76 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----------------------------~--------------~~ 76 (150)
.|+.+.|+++...|++|...|.+-+|.+...+..- . .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46788888888888888888888888664221000 0 00
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee--ccC-----CCCcceeEEEEc-----CCc---cEEEec
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--IAE-----HSEYPIESLGIA-----SVL---CFINSG 141 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~-----~~~~~i~~~~~~-----~~~---~~l~s~ 141 (150)
.. ..++|+++...+=.+++.|..+|.+.+.|++....+.. +.. .....++++.|+ .|+ -.+..|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 11 23556677655667999999999999999987665543 212 112237777776 233 356666
Q ss_pred cccccc
Q 031924 142 FLSLNV 147 (150)
Q Consensus 142 ~~~~~v 147 (150)
...|++
T Consensus 162 Tn~G~v 167 (395)
T PF08596_consen 162 TNSGNV 167 (395)
T ss_dssp ETTSEE
T ss_pred eCCCCE
Confidence 666654
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.95 E-value=0.002 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=23.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR 25 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~ 25 (150)
+.|+|...+|+.+..+|.|.+|.+.
T Consensus 17 ~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 17 MSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred EEECCCCCEEEEEECCCeEEEEECC
Confidence 4799999999999999999999983
No 369
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.074 Score=37.58 Aligned_cols=130 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-c--ccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D--CSDRFVGLS 80 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~--~~~~~~~~~ 80 (150)
++++++. ..|.+.-|...... ++..-...++++.++.|++|++.+++--.+.+|.+++..... + ..++.+. .
T Consensus 34 Nkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k 111 (657)
T KOG2377|consen 34 NKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-K 111 (657)
T ss_pred cceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-C
Confidence 3344333 44455555554322 121122346799999999999999999999999999973111 1 1122223 3
Q ss_pred ccceeEeeecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 81 PNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
...|...+..+...++.-...| +-+|...+ .+.++..+.|.. .|.-..|.++.+.+.-
T Consensus 112 ~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 112 NANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILL 170 (657)
T ss_pred cceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEee
Confidence 3445555544445555554443 34554333 234555555555 4888899998876443
No 370
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.039 Score=39.46 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=81.2
Q ss_pred cCcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-------EEEeecCCCeEEEEEcccccccccc-
Q 031924 5 ADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKDCSDR- 75 (150)
Q Consensus 5 ~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~~~~~~~~~~~~- 75 (150)
.+..+|+. +.....++-.|++.|+.+.....+..- -+.|.|..+ .-++|-.+..|.-.|.+..+..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 45555554 445667888899999988777766543 456666421 1234445555555576654422211
Q ss_pred -ccc-ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 76 -FVG-LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 76 -~~~-~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
++. +......+.......+++.++..|.|++||--..+....+++... .|..+..+.+|.++...+
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 111 012233344444567999999999999998654444444444445 588999999998765444
No 371
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.01 Score=45.78 Aligned_cols=137 Identities=15% Similarity=-0.014 Sum_probs=85.7
Q ss_pred eecCcceEEEE--cCCCeEEEEEcCCCee--------ee---eeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccc
Q 031924 3 FAADAMKLLGT--SGDGTLSVCNLRKNTV--------QT---RSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 3 ~~~~~~~l~~~--~~d~~i~i~d~~~~~~--------~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~ 68 (150)
..+|....++. +.+-.|..||++.-.. +. ..........++.|+|. -...++...|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 34565544443 3444788999876321 11 11122335678888886 33356667889999987754
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
..+....++. ....++++ ++.|..++.|-..|++..|...-. ..+......+.+.|.++.|-..-.+++.-
T Consensus 188 ~~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 188 LAQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 4444555543 45566766 899999999999999999876321 22222222223469999998888777653
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.79 E-value=0.057 Score=39.73 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=50.5
Q ss_pred CcEEEEEEEeCCCEEEeec------CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecC----------
Q 031924 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE---------- 100 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~---------- 100 (150)
..+...+++|+|+.++..- .|..-.+|-....+.. ..+.. .. ....-. +++|+.+.+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999999886554 2433344433212222 22221 11 123222 667665555432
Q ss_pred --CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 101 --NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 101 --dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+.+.+.++..+...+ .... .|..+.|||||..+|.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAM 464 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEE
Confidence 2333333443333222 2233 5999999999998775
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.79 E-value=0.1 Score=37.49 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=66.1
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCC------cEE--EEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+..++.++.++.+..+|.++++.+.+...... .+. .+.. .++..++.++.++.+..+|.+ .++.+-++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~-TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAE-TGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECC-CCCEeeeecC
Confidence 44667777889999999999987765543222 000 1111 122678888899999999985 4555544432
Q ss_pred ccccc-----eeEeeecCCCEEEEec---------CCCcEEEEeccCCeeeeecc
Q 031924 79 LSPNS-----VDALLKLDEDRVITGS---------ENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 79 ~~~~~-----v~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~ 119 (150)
.... +.+--...+..++.++ .++.+..+|..+++.+..+.
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 1110 1110011234555554 36788999999988776653
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.71 E-value=0.072 Score=40.82 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=78.8
Q ss_pred eEEEEEcCCCeeeeeeccC--C--CcEEEEEEEeC-CCEEEeec----------CCCeEEEEEccccccccccccc-ccc
Q 031924 18 TLSVCNLRKNTVQTRSEFS--E--EELTSVVLMKN-GRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVG-LSP 81 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~--~--~~v~~~~~~~~-~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~-~~~ 81 (150)
.++++|.++-+.+...+.. + ..+.++.|..| +.++++|+ ..|.|.+|.+.. .+.++.... .-.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3566776666554333221 1 24556668777 77888875 257888888764 222222211 024
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.+.++.-.+|++++. -+..|++|+..+++.++.-..+.. ++..+...-.|..++.|..-..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceE
Confidence 4566666667887764 456899999988766665545544 67788888888888887654433
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.036 Score=39.59 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEcCCCeEEEEEcCCCe--eeeeeccC----CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 12 GTSGDGTLSVCNLRKNT--VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.|-.++.|.-||++-.. .+...+.+ .....|.+-.. ..++++|+.+|.|++||- ...+....+++ -..+|+
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I~ 475 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAIK 475 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccc-cCCcee
Confidence 45567788899987532 22222332 22344544433 457999999999999995 34355566777 788899
Q ss_pred Eee-ecCCCEEEEecCCCcEEEEec
Q 031924 86 ALL-KLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 86 ~~~-~~~~~~l~~~~~dg~i~~~d~ 109 (150)
.+. ..+|++|+..+ +..+.+.++
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEE
Confidence 888 88999887655 556666665
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.56 E-value=0.19 Score=36.98 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=73.3
Q ss_pred cceEEEEcCC------CeEEEEEcCCCeeeeeeccCCC-cEEEEEEEeCCCEEEeecCC------CeEEEEEcccccccc
Q 031924 7 AMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (150)
Q Consensus 7 ~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~ 73 (150)
+.+++.|+.+ ..+..||..+++......-... .-.+++. -++...++|+.| .++..||.... +..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTN-QWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCC-cee
Confidence 4455666655 4677888887743322211111 2233333 346777888888 35677787533 333
Q ss_pred ccccccccccee-EeeecCCCEEEEecCCCc-----EEEEeccCCeeeeeccCCCCcceeEE-EEcCCccEEEecccccc
Q 031924 74 DRFVGLSPNSVD-ALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-GIASVLCFINSGFLSLN 146 (150)
Q Consensus 74 ~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~~~~ 146 (150)
..-+- ...... .+...+|.+.+.|+.||. +-.||..+.+- ........ +.... ...-+|.+.+.||.++.
T Consensus 363 ~~a~M-~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPM-NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCc-cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 21111 112222 334668889999999874 66777765542 11111111 12222 23457888888887765
Q ss_pred c
Q 031924 147 V 147 (150)
Q Consensus 147 v 147 (150)
-
T Consensus 440 ~ 440 (571)
T KOG4441|consen 440 S 440 (571)
T ss_pred c
Confidence 5
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.53 E-value=0.1 Score=33.66 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=60.2
Q ss_pred CcEEEEEEEeCCCEE-EeecCCCeEEEEEcccc-ccc-----ccccccc--cccce-eEee-ecCCCEEEEecCCCcEEE
Q 031924 38 EELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYF-KDC-----SDRFVGL--SPNSV-DALL-KLDEDRVITGSENGLISL 106 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~-~~~-----~~~~~~~--~~~~v-~~~~-~~~~~~l~~~~~dg~i~~ 106 (150)
.-.+.++|+.+.+.+ +.-+.+-.|..||.... +.. +..+... .+... ..++ ...|++.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 445678898876666 45566778877873211 111 1111100 01111 1122 446788888888899999
Q ss_pred EeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 107 VGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
.|+.+++.+..+..... .+++++|--.
T Consensus 238 ~dp~tGK~L~eiklPt~-qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTP-QITSCCFGGK 264 (310)
T ss_pred ECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence 99999999998876666 4999999643
No 378
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.50 E-value=0.001 Score=47.94 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=65.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEE-cccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS-WGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~-~~~~~~~~~~~~~~ 79 (150)
+|-.+.+++.+|.....++++|++..... ...-.+..+..+...| .+.++++- .||.+-+|| .+......+.+..
T Consensus 161 cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~- 237 (783)
T KOG1008|consen 161 CWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILR- 237 (783)
T ss_pred ccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhh-
Confidence 55667788888888889999998754211 1112233566677777 56666555 599999999 4433344444432
Q ss_pred cc----cceeEee-ec-CCCEEEEec-CCCcEEEEecc
Q 031924 80 SP----NSVDALL-KL-DEDRVITGS-ENGLISLVGIL 110 (150)
Q Consensus 80 ~~----~~v~~~~-~~-~~~~l~~~~-~dg~i~~~d~~ 110 (150)
.+ ..+..+. .| ...++++.+ ..++|+++|+.
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 22 2356665 33 333455544 45799999985
No 379
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.46 E-value=0.015 Score=39.84 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=44.2
Q ss_pred ecCcceEEEE---------cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 4 AADAMKLLGT---------SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 4 ~~~~~~l~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
|||+++++.. +..+.+.+||+++++.... ......+....|+|+|+.++-. .++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-TPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S-EETTBSEEEE-SSSTEEEEE-ETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-cCCccccccceeecCCCeeEEE-ecCceEEEECC
Confidence 6888887772 2346889999999855433 2225678899999999998877 45789998764
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.34 E-value=0.15 Score=33.46 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=77.8
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-cccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~ 86 (150)
+.....-.++...+||..+-+.+.++.-. ..=..++ .+++.|+..+....++.+|..+. +...++... ...++..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCC
Confidence 34444557889999999988777666432 3334554 57888888877889999997544 333333210 2233333
Q ss_pred ---eeecCCCEEEEecCCCcEEEEeccCCeeeeecc------------CC---CCcceeEEEEcCCc-cEEEec
Q 031924 87 ---LLKLDEDRVITGSENGLISLVGILPNRIIQPIA------------EH---SEYPIESLGIASVL-CFINSG 141 (150)
Q Consensus 87 ---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------------~~---~~~~i~~~~~~~~~-~~l~s~ 141 (150)
+-..+|...+-.-....|...|+.++++...+. .. .+ -.+.+|++|+. ++++||
T Consensus 177 LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d-VLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD-VLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS--EEEEEEETTTTEEEEEE
T ss_pred cEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC-eeEeEeEeCCCCEEEEEe
Confidence 335577777777788888889999988766541 01 12 37899998855 566665
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.34 E-value=0.2 Score=34.78 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=35.1
Q ss_pred eeecCcceEEEEc-CC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTS-GD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+|.+||+.|+-++ .+ ..+.+.|+++++..+.-.+.........++|+.+.++-...+..++-.|+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 4677886655544 34 45777788988765443332222224566788787755445567887888643
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.28 E-value=0.19 Score=33.88 Aligned_cols=136 Identities=11% Similarity=-0.042 Sum_probs=65.3
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cc---cccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DC---SDRFVG 78 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~---~~~~~~ 78 (150)
-++|+++++++.....+.-||.-...-...-.....++..|.|.|++...+.+ ..|.++.=+..... .. ...+..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 35788888888766666778754322222223345789999999997765544 88888876621111 11 111111
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC---CCCcceeEEEEcCCccEEEeccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
....+..+. .+++...+ ++..|.+ +.....++.-+.... -+. ....+.|.++.+-++.|..
T Consensus 231 -~~~~~ld~a~~~~~~~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp ---S-EEEEEESSSS-EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE-ST
T ss_pred -CceeeEEEEecCCCCEEE-EeCCccE-EEeCCCCccceECccccCCCC-ceEEEEEcCCCceEEECCC
Confidence 223355566 44444555 4556654 344455665444432 122 3778888777666666543
No 383
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.22 E-value=0.077 Score=33.95 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=46.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeee-------ec-------cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTR-------SE-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
...++++++...+|.+++||+.+++.+.. +. .....|..+.+..+|.-+++- .+|..+.|+..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 45678889999999999999999875421 11 244578888888888877765 45778888753
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.33 Score=35.64 Aligned_cols=133 Identities=8% Similarity=0.034 Sum_probs=66.4
Q ss_pred CcceEEEEcCCC-----eEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCCC-------------------
Q 031924 6 DAMKLLGTSGDG-----TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (150)
Q Consensus 6 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (150)
+++..+.|+.++ .+..||..+.+-.. .+.........+ .-+|...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456666666543 47788987764321 111111111111 23566667777542
Q ss_pred ----eEEEEEccccc-ccccccccccccceeEeeecCCCEEEEecCCC------cEEEEeccC-Ce--eeeeccCCCCcc
Q 031924 60 ----TVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGSENG------LISLVGILP-NR--IIQPIAEHSEYP 125 (150)
Q Consensus 60 ----~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~i~~~d~~~-~~--~~~~~~~~~~~~ 125 (150)
.+..||..... .....+.. +..-.+++..++++.+.|+.++ .+..||+.+ .+ .+..++.... .
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 46678865321 11222211 1111123355677777777542 467788876 33 2333322211 1
Q ss_pred eeEEEEcCCccEEEeccccc
Q 031924 126 IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 126 i~~~~~~~~~~~l~s~~~~~ 145 (150)
...+ .-++++.+.|+.++
T Consensus 506 ~~~~--~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 506 LHTI--LHDNTIMMLHCYES 523 (557)
T ss_pred ceeE--EECCEEEEEeeecc
Confidence 2222 23788888888765
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.23 Score=33.57 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=64.8
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cc-c-ccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CS-D-RFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~-~-~~~ 77 (150)
.|.++...|+-+ -..+.|.-|+..+++... +. ..+.+.+...-..+..|+++... +.+++.+..+. .. . ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccC
Confidence 366666644444 467888888887664332 22 22233444443344445544333 33445422222 11 1 111
Q ss_pred cccccceeEe-eecCCCEEEEecC-----------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 78 GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+......+.. ..++|.+.+.... -|.++.+|. .+...+.+..+-. --+.++||||++.+...
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~a 180 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEE
Confidence 1011222222 2666766655443 123444444 3555555544434 36789999999765543
No 386
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.14 E-value=0.2 Score=32.78 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=56.8
Q ss_pred eeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccccccccceeEeeec-CCCEEEEecCCCcEEEEec
Q 031924 32 RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGI 109 (150)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~ 109 (150)
.+.+-...+..+.|+|+.+ .+++....+.|.-++.. ++.+.+++-....-...+... ++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4455566799999999755 55667777888777763 677776653112234455533 4555555545889999887
Q ss_pred cCCe------eeeecc--C--CCCcceeEEEEcCCccEEEe
Q 031924 110 LPNR------IIQPIA--E--HSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 110 ~~~~------~~~~~~--~--~~~~~i~~~~~~~~~~~l~s 140 (150)
.... ..+.+. . .....+..++|+|.++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v 134 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV 134 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE
Confidence 3211 112121 1 12235899999997654443
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.99 E-value=0.041 Score=25.36 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=24.6
Q ss_pred CcEEEEEEEeCC---CEEEeecCCCeEEEEEcc
Q 031924 38 EELTSVVLMKNG---RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 38 ~~v~~~~~~~~~---~~l~~~~~d~~i~i~~~~ 67 (150)
+.+.++.|+|+. ..|+-.-..+.+.++|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 368899999853 477777778999999997
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.91 E-value=0.011 Score=44.64 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEE-----------EEEEEeCCCEEEeecCCCeEEEEEcccccc---
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-----------SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--- 71 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--- 71 (150)
+.-++..+-.++.+++....+-.. ..+..|...+. --..+|||+.|+..+.||.++.|.+.-.++
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 556677777888888877654321 11122322222 223689999999999999999998754443
Q ss_pred -ccccccccccccee-EeeecCC----------CEEEEecC-CCcEEEEeccCCeee
Q 031924 72 -CSDRFVGLSPNSVD-ALLKLDE----------DRVITGSE-NGLISLVGILPNRII 115 (150)
Q Consensus 72 -~~~~~~~~~~~~v~-~~~~~~~----------~~l~~~~~-dg~i~~~d~~~~~~~ 115 (150)
+....+. |...-. |....+. .++++++. +..+++|.....+++
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4444455 553222 2212211 24455443 457888876655554
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.88 E-value=0.38 Score=33.92 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=53.9
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-e-c-CC---------------C-E
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-K-L-DE---------------D-R 94 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~-~-~~---------------~-~ 94 (150)
......+.++..+|++++.++.+.=|.|.++|+. .+..++.++|.....+.-+. . . +. . +
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3334467889999999988888777999999985 45667777762222222111 1 1 10 1 3
Q ss_pred EEEecCCCcEEEEeccCCeeeeec
Q 031924 95 VITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
++-+-..|.|.+|+++.+..+..+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEE
Confidence 344556788888888877665544
No 390
>PHA02713 hypothetical protein; Provisional
Probab=95.88 E-value=0.47 Score=34.91 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=44.7
Q ss_pred CcceEEEEcCC------CeEEEEEcCCCeeeeeeccCC-CcEEEEEEEeCCCEEEeecCCC-----eEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~-~~ 72 (150)
+++..+.|+.+ ..+..||..+++-.. +.... ..-......-+|+..+.|+.++ ++..||..... ..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 44555556532 347778877764321 11111 1111122233577777787653 47788875321 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecCC
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 101 (150)
...++. +..-.+....++.+.+.|+.+
T Consensus 382 ~~~mp~--~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 382 LPDMPI--ALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCCCCc--ccccccEEEECCEEEEEeCCC
Confidence 122221 111112335577788888765
No 391
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.85 E-value=0.058 Score=24.30 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCcceEEEEc-CCCeEEEEEcCCCeeeeeecc
Q 031924 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF 35 (150)
Q Consensus 5 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~ 35 (150)
|+++.|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777676655 688999999988877766654
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.79 E-value=0.54 Score=34.97 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=66.0
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccccceeEee---ecCCCEEEEecCCCcEEEEec-c---
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGI-L--- 110 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~-~--- 110 (150)
...-+.-+.-++..++-+....+.|||.+... +..+.| . ..+.|..+. .++++.+++.+-.+.|.++.- +
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34444444545555555556689999986332 122233 2 356677665 568888888888888888842 1
Q ss_pred -C----Ceeeeec--cCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 111 -P----NRIIQPI--AEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 111 -~----~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. ...++.+ ..+..-+|.+..|.++|.+++.++....|
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv 152 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFV 152 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEE
Confidence 1 1123322 23333378999999999998877765443
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.73 E-value=0.32 Score=31.99 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=62.8
Q ss_pred eecCcceEEEEcCCC--eEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccccccc
Q 031924 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|..++.++-+.+.-| .|+.+|+++++......-. ...-..+... +..+.--+ .++...+||..+. +.+.++.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~y 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTL-KKIGTFPY 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTT-EEEEEEE-
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccc-eEEEEEec
Confidence 445666667776544 7899999999876554432 2333444444 33443333 6789999998644 44555542
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+++ .++ .++..|+.......++++|..+.+..+.+
T Consensus 129 ~~EGW--GLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 129 PGEGW--GLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp SSS----EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred CCcce--EEE-cCCCEEEEECCccceEEECCcccceEEEE
Confidence 11222 233 45666766666789999998776555544
No 394
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.003 Score=44.41 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|-|++.-++.++.+..+..||-... ..-.. ...+....++|..++..++ .+-..+.+.+||+.. +-.+++.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~--eytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--EYTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhh--hhHHHHhc-c
Confidence 46677777888888888888986543 22222 2345567888888877664 455678999999852 22222221 1
Q ss_pred ccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 81 PNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 81 ~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
...-.++. ++....++.+...|.+.+++..+.+.+-....|.. .+.++++.+.+..+..+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVILCD 177 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeeecC
Confidence 11122222 55666777788889999999887776666655766 58899999887665443
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.51 E-value=0.45 Score=32.10 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=56.6
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEec-cC
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGI-LP 111 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~-~~ 111 (150)
....+.+..+.-+++|++++++..-....-||.... .....-.. ....+..+. .+++.+.+.+ ..|.+++=+. ..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 344567888888999999988877767777875321 11111122 346677776 6777766654 7888888772 22
Q ss_pred Ceeeee--ccC-CCCcceeEEEEcCCccEEEecccc
Q 031924 112 NRIIQP--IAE-HSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 112 ~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.+.... ... ..++.+..++|.+++...|+|+..
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 222221 111 223458899999999888877654
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.48 E-value=0.35 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=41.5
Q ss_pred EEeCCCEEEeecCCCeEEEEEcccccccccc------cc-------cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 45 LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR------FV-------GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 45 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------~~-------~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
+..++.++++-+.+|.+++||+......... +. . ....|..+. ..+|.-+++- .+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~-~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKS-SSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCC-CCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 4567899999999999999999754222221 11 1 234455444 6667666654 46788888764
No 397
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.48 E-value=0.53 Score=33.06 Aligned_cols=103 Identities=11% Similarity=-0.027 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCEEEee-cCC----CeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCC-----------
Q 031924 40 LTSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENG----------- 102 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~-~~d----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg----------- 102 (150)
+....++|+|++++.+ +.. ..++++|+.+.......+.. .. ...+. .++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3467888999988744 333 36999999644222223332 11 12233 66766655444222
Q ss_pred cEEEEeccCCee--eeeccCCCCcc-eeEEEEcCCccEEEeccccc
Q 031924 103 LISLVGILPNRI--IQPIAEHSEYP-IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 103 ~i~~~d~~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~~~ 145 (150)
.|+.|.+.+... .-.+......- ...+..++|+++++..+.+.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 367777765432 12332222211 45788899999987655443
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.39 E-value=0.9 Score=34.82 Aligned_cols=109 Identities=8% Similarity=0.078 Sum_probs=67.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc--------EEEEEEE----------------eCCCEEEeecCCCeEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLM----------------KNGRKVVCGSQSGTVL 62 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~i~ 62 (150)
+..++.++.++.|.-.|.++|+.+.+....... .+.+.+- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888899999999999887665432211 1223332 1245788898999999
Q ss_pred EEEcccccccccccccccccce-------------eEee-ec--CCCEEEEecC----------CCcEEEEeccCCeeee
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSV-------------DALL-KL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v-------------~~~~-~~--~~~~l~~~~~----------dg~i~~~d~~~~~~~~ 116 (150)
-.|.+ .++....+.. ...+ .... .| .+..++.|+. +|.|+-+|.++++.+.
T Consensus 274 ALDA~-TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDAD-TGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECC-CCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99975 4455443321 1111 0111 11 2446666643 6889999999999877
Q ss_pred ec
Q 031924 117 PI 118 (150)
Q Consensus 117 ~~ 118 (150)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 65
No 399
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.35 E-value=0.094 Score=37.13 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeee-eee-ccCCC----cEE-EEEEEeCCCEEEeecCCCeEEEE-Eccccccc--
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EFSEE----ELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-- 72 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~i~-~~~~~~~~-- 72 (150)
..||++.++.-++ .++.++++.+.... .++ ....+ .|+ .+..-..|.-+.+++.||-+.=| |.+..+..
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998888766 68999988765432 111 11111 122 11122346668888899888765 65533321
Q ss_pred --ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 73 --SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 73 --~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
++.++- .+..+..+. ..+.+-+++-+.+|++..+.....+.+-.-... + .+.-+++||.+.++++-.
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED 376 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec
Confidence 122222 334455555 335567788888999988866444432221122 2 367789999998887643
No 400
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.33 E-value=0.63 Score=32.70 Aligned_cols=62 Identities=26% Similarity=0.240 Sum_probs=44.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeee--ecc------CCCcEEEEEEEe-----CC---CEEEeecCCCeEEEEEcc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTR--SEF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~i~~~~ 67 (150)
|=-+++.|..+|.+.|.|++....+.. +.. ....++++.|.. |+ -.+++|+..|.+.+|.+-
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 334889999999999999987766543 112 234688888873 22 468899999999999773
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.33 E-value=0.66 Score=32.90 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCeeeeeeccCCC--cEEEEEEEeC--CCE-EEeecCCCeEEEEEcccccc----ccccc----------
Q 031924 16 DGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKN--GRK-VVCGSQSGTVLLYSWGYFKD----CSDRF---------- 76 (150)
Q Consensus 16 d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~-l~~~~~d~~i~i~~~~~~~~----~~~~~---------- 76 (150)
..++.+||+.+.+.++.+.--++ ....+.|..+ ..+ |+.+-...+|..|--...+. .+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 46899999999998887764332 3567777644 333 33333445555553211111 11111
Q ss_pred -------ccccccceeEee-ecCCCEEEEe-cCCCcEEEEeccC
Q 031924 77 -------VGLSPNSVDALL-KLDEDRVITG-SENGLISLVGILP 111 (150)
Q Consensus 77 -------~~~~~~~v~~~~-~~~~~~l~~~-~~dg~i~~~d~~~ 111 (150)
.. -+.-++.+. +.+.++|..+ -..|.++.||+..
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11 133456666 8888877554 5689999999964
No 402
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.32 E-value=0.29 Score=28.70 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=66.5
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEe-----CCCEEEeecCCCeEEEEEcccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
|+.....|++++..++|.|++..... .+..+ .-...|++++-.+ +...|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 55566788899899999999876532 12222 2344566665554 2456777755 47889999754
Q ss_pred cccccccccccccceeEee--ec---CCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 70 KDCSDRFVGLSPNSVDALL--KL---DEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~--~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
.....+ . -++.+.++. .. +..+++ .+.+..|.-+|....+...+.
T Consensus 84 ~d~Fyk--e-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 84 SDLFYK--E-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred chhhhh--h-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence 333322 2 345566554 22 334444 455778888888666655544
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.25 E-value=0.12 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=39.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 47 (150)
+.+.+|++.+++-..++|...|..+|+.+..++-....+++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4556778888888889999999999999998888899999999963
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.15 E-value=0.88 Score=33.31 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=64.4
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCC-CcEE---E-------EEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELT---S-------VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
+..++.++.++.|.-+|.++|+.+.+..... ..+. + +++ .+..++.++.|+.+..+|.+ .++.+-+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~-TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAK-TGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECC-CCCEEee
Confidence 4567777788899999999998876654321 1111 1 122 24567788899999999975 4555433
Q ss_pred cccc-ccc--ceeEeeecCCCEEEEecC------CCcEEEEeccCCeeeeec
Q 031924 76 FVGL-SPN--SVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 76 ~~~~-~~~--~v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 118 (150)
.... +.. .+.+.--..+..++.+.. +|.|+.+|.++++.+..+
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 3210 111 111100012334555432 688999999998877654
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.12 E-value=0.39 Score=33.86 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=53.0
Q ss_pred CeeecCcceEEEEcCCCeEEE---EEcCC-C----eee----eeeccCC-CcEEEEEEEe-----------CCCEEEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSV---CNLRK-N----TVQ----TRSEFSE-EELTSVVLMK-----------NGRKVVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i---~d~~~-~----~~~----~~~~~~~-~~v~~~~~~~-----------~~~~l~~~~ 56 (150)
+..+|++..|+.+.++..+.+ |+... + ... ..+.... +.|+++.+-| |...+++|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 356899999999977766554 53311 1 111 1122222 4677776654 357789999
Q ss_pred CCCeEEEEEcccccccccccccccccceeEee
Q 031924 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (150)
.+|.+++|... +..+..-.- |+.+|..+.
T Consensus 87 ssG~vrfyte~--G~LL~~Q~~-h~~pV~~ik 115 (415)
T PF14655_consen 87 SSGYVRFYTEN--GVLLLSQLL-HEEPVLKIK 115 (415)
T ss_pred cccEEEEEecc--chHHHHHhc-CccceEEEE
Confidence 99999999853 444443334 677777654
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.01 E-value=0.05 Score=41.45 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred CeEEEEEcCC--Ceeee-----eeccCCCcEEEEEE---EeCCCEEEeecCCCeEEEEEccccccccccccccccccee-
Q 031924 17 GTLSVCNLRK--NTVQT-----RSEFSEEELTSVVL---MKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD- 85 (150)
Q Consensus 17 ~~i~i~d~~~--~~~~~-----~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~- 85 (150)
|.+.+||+.. |+... .......++.-+.| .++.-++-.+..++.+++..+.. .....|.+ |..++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 5678888754 43321 22222233344444 45666777777888999877642 22233444 544333
Q ss_pred ---------Ee--eecCCCEEEEecCCCcEEEEecc-CC----eeeeeccCCCC
Q 031924 86 ---------AL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSE 123 (150)
Q Consensus 86 ---------~~--~~~~~~~l~~~~~dg~i~~~d~~-~~----~~~~~~~~~~~ 123 (150)
.+ .++||..++.++.||.+++|.+. ++ +++...+.|.+
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 12 28899999999999999999763 22 35555666653
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.95 E-value=1.1 Score=33.45 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=41.7
Q ss_pred EEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEE--eCCCEEEeecCCCeEEEEEc
Q 031924 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 11 ~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~~~ 66 (150)
++-+...++.|||...+....... ...+.|.++.|. |+++.+.+.+..+.|.+|.-
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 334456689999998886443222 446789999996 57899988889999999864
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.94 E-value=0.63 Score=30.53 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=78.9
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~ 77 (150)
+++++++.++... ....+.++... ....... ....+....|++++...+....+...+++.....+. ......
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 5788888777655 33445555433 2222221 223778889999977766666666666663111111 111111
Q ss_pred cc-cccceeEee-ecCCCEEEEec---CCCcEEEEecc---CC--e----eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 78 GL-SPNSVDALL-KLDEDRVITGS---ENGLISLVGIL---PN--R----IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~-~~~~v~~~~-~~~~~~l~~~~---~dg~i~~~d~~---~~--~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. ....|..+. +++|..++.-. .++.|.+--+. .+ . .......... .+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-cceeeeecCCCEEEEEeCC
Confidence 10 112788887 99998776554 35677766543 22 1 1111112123 5899999999998876655
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
..
T Consensus 186 ~~ 187 (253)
T PF10647_consen 186 AG 187 (253)
T ss_pred CC
Confidence 43
No 409
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.91 E-value=0.77 Score=31.45 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=64.3
Q ss_pred eeecCcceEEEE----------cCCCeEEEEEcCCCeeeeeeccCCC-------cEEEEEEEeCCCEEEee--cCCCeEE
Q 031924 2 TFAADAMKLLGT----------SGDGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVCG--SQSGTVL 62 (150)
Q Consensus 2 ~~~~~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~--~~d~~i~ 62 (150)
..+|+++.++++ -....|.+||.++-.....+.-... ....++++.|++++++. +...+|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 468888888763 3345789999998766544332211 22345667778777654 3456777
Q ss_pred EEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEecc-CCee
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRI 114 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~ 114 (150)
+.|+. .++....+.. + .+..+....++-+.+-|.||.+.-..+. .++.
T Consensus 122 VVDl~-~~kvv~ei~~--P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 122 VVDLA-AKKVVGEIDT--P-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp EEETT-TTEEEEEEEG--T-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred EEECC-CCceeeeecC--C-CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 88875 3355555432 1 1222322233568888899999988886 3443
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.88 E-value=0.47 Score=35.99 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=46.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC----------Cee--eee--------e-ccCCCcEEEEEEEeC---CCEEEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--QTR--------S-EFSEEELTSVVLMKN---GRKVVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~--~~~--------~-~~~~~~v~~~~~~~~---~~~l~~~~ 56 (150)
|.++|+|++++..+..+ |.|..+.. ++. ..+ + ......|..+.|+|. +..|++-+
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35689999999887754 55544432 111 111 0 122347899999996 58899999
Q ss_pred CCCeEEEEEccc
Q 031924 57 QSGTVLLYSWGY 68 (150)
Q Consensus 57 ~d~~i~i~~~~~ 68 (150)
.|+++++||+..
T Consensus 169 sdn~lR~y~~~~ 180 (717)
T PF10168_consen 169 SDNTLRLYDISD 180 (717)
T ss_pred cCCEEEEEecCC
Confidence 999999999864
No 411
>PHA03098 kelch-like protein; Provisional
Probab=94.87 E-value=1.1 Score=32.80 Aligned_cols=134 Identities=11% Similarity=-0.064 Sum_probs=61.8
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------CeEEEEEccccc-ccc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK-DCS 73 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~-~~~ 73 (150)
+++.++.|+.+ ..+..||..+++-...-.-...........-+++..+.|+.+ ..+..||..+.. ...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45556666544 346678877654321111111111111122356666777632 457888875321 111
Q ss_pred cccccccccceeEeeecCCCEEEEecCCC--------cEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 DRFVGLSPNSVDALLKLDEDRVITGSENG--------LISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++. .. .-.+....++..++.|+.+. .+..||+.+++- +..+..... ....+. .++++++.|+.
T Consensus 422 ~~~p~-~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cc-cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEE--ECCEEEEEcCC
Confidence 22221 11 11123345667777776432 378888876542 222211111 111222 36777777775
Q ss_pred c
Q 031924 144 S 144 (150)
Q Consensus 144 ~ 144 (150)
.
T Consensus 497 ~ 497 (534)
T PHA03098 497 K 497 (534)
T ss_pred c
Confidence 4
No 412
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.76 E-value=0.67 Score=32.74 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=36.1
Q ss_pred eEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccC
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
.|++|+.. |+.+.++.- ..+.+..+...+...|+.-..||.++++|+..
T Consensus 62 ~I~iys~s--G~ll~~i~w-~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPW-DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCC--CCEeEEEEE-CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 58899864 677777765 44677777755566677778999999999863
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.70 E-value=0.64 Score=34.14 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=61.4
Q ss_pred CeeecC----cceEEEEcCCCeEEEEEcCC-----CeeeeeeccC-----CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAAD----AMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS-----EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
+.|.|- ...+++.-..++|.+|.+.. ++.+..-..+ .--...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 357663 33455555777999999863 2222111111 112347889999888877665555455666
Q ss_pred ccccc-cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEec
Q 031924 67 GYFKD-CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGI 109 (150)
Q Consensus 67 ~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~ 109 (150)
+.... ...-++ ..+.|.|.+ ..+|+.|+.+-. .=.-++||-
T Consensus 142 ~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 54332 223333 356677766 668876655433 335678875
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.22 Score=33.20 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=41.2
Q ss_pred eeecCcceEEEEcCC-----CeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeec
Q 031924 2 TFAADAMKLLGTSGD-----GTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (150)
.|||||++|+..-+| |.|-+||...+ +.+..+..|.-....+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 489999999987543 78999998753 23445556655678899999999987764
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.49 E-value=1.4 Score=32.62 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=67.8
Q ss_pred CcceEEEEcCC------CeEEEEEcCCCeeeeeeccCCCcEEEEEE-EeCCCEEEeecCCCe-----EEEEEcccccccc
Q 031924 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGT-----VLLYSWGYFKDCS 73 (150)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~-----i~i~~~~~~~~~~ 73 (150)
++...++|+.| .++..||..+++-.. .......-..... .-+|...++|+.||. +..||.... +..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-ccc
Confidence 45566777777 456678887765332 1111111111111 225777788988864 666775422 211
Q ss_pred ccccccccccee--EeeecCCCEEEEecCCC------cEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 DRFVGLSPNSVD--ALLKLDEDRVITGSENG------LISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 ~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg------~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..-+ ...... ..+..+|.+.++|+.++ .+..||..+++ .+..+..... -..++ .-++.+.+.||.
T Consensus 410 ~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a-~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 410 PVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVA-VLNGKIYVVGGF 484 (571)
T ss_pred ccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--cceEE-EECCEEEEECCc
Confidence 1111 111222 23366888889988665 46678877654 2222221111 11122 345667777776
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
++
T Consensus 485 ~~ 486 (571)
T KOG4441|consen 485 DG 486 (571)
T ss_pred cC
Confidence 65
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=0.98 Score=30.30 Aligned_cols=110 Identities=9% Similarity=0.165 Sum_probs=70.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc----c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----R 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~ 75 (150)
+.|+|+.+.|++......--++=...|+.+.++.-. -.....+.+..+|++.++--.++.+.++.+......+. .
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999998888877666666666667777665421 33456788888888888888889999887753321111 1
Q ss_pred cc----cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 76 FV----GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 76 ~~----~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
++ .........++ .+.+..++.+-+..-+.++...
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 11 10133344555 6666667666676766766553
No 417
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.32 E-value=0.4 Score=35.05 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
+..++++-+.|+.+|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6678999999999999999998885543
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.26 E-value=0.96 Score=29.69 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred cEEEEEEEeCCCEEEeec---CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe-ccCCe
Q 031924 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG-ILPNR 113 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d-~~~~~ 113 (150)
.+...+++++++.++... ....++++... +.......+ . .+..-. .+++........+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g-~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG-G--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC-C--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999998876654 23345554432 222222232 2 233322 55666666666666666663 22332
Q ss_pred --eeeec-cCCCCcceeEEEEcCCccEEEecc
Q 031924 114 --IIQPI-AEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 114 --~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
....- ..... +|..+++||||..+|.-.
T Consensus 100 ~~~~~v~~~~~~~-~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 100 GEPVEVDWPGLRG-RITALRVSPDGTRVAVVV 130 (253)
T ss_pred ceeEEecccccCC-ceEEEEECCCCcEEEEEE
Confidence 21111 11112 599999999998877433
No 419
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.89 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=33.3
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeecc------------CCCCcceeEEEEcCCc-cEEEecc
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIA------------EHSEYPIESLGIASVL-CFINSGF 142 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~~l~s~~ 142 (150)
..+|...+-.-.+..|...|+.+++....+. .+.+ -.+.+++.|++ +++++|=
T Consensus 183 ~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~n-vlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 183 WVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDN-VLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred eeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccc-cccceeecCcCCeEEEecC
Confidence 4466666666666666666777776555431 2222 37788999977 7777763
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.86 E-value=1.5 Score=30.62 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=51.6
Q ss_pred EEcCCCeeeeeeccCCCcEE-----EEEEEeCCCEE-EeecCCCeEEEEEccccccccccccc-ccccceeEeeecCCCE
Q 031924 22 CNLRKNTVQTRSEFSEEELT-----SVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDALLKLDEDR 94 (150)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 94 (150)
-|..+|..+.++......-. .=+|.++|+.| +.+..||.-.+|-+.-....+.+++. ........+.+++++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 46667766666654443222 33567788665 45555665555543322333334432 0122223445677777
Q ss_pred EEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEE--cCCccEEEe
Q 031924 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGI--ASVLCFINS 140 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s 140 (150)
++-......++-.|+.+.+....+.....+ .....| +.|+..++.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~-~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDW-KGYGTWVANSDCTKLVG 141 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTE-EEEEEEEE-TTSSEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCccc-ccccceeeCCCccEEEE
Confidence 765555568888999887755555444443 433444 456766553
No 421
>PHA03098 kelch-like protein; Provisional
Probab=93.82 E-value=1.9 Score=31.52 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred cceEEEEcCC------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc-cccc
Q 031924 7 AMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 7 ~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~-~~~~ 74 (150)
+..++.|+.+ ..+..||..+++....-.-...........-++...+.|+.+ ..+..||..... ....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455555433 246778877765422111111111111222356677777765 346677765321 1111
Q ss_pred ccccccccceeEeeecCCCEEEEecCC------CcEEEEeccCCe
Q 031924 75 RFVGLSPNSVDALLKLDEDRVITGSEN------GLISLVGILPNR 113 (150)
Q Consensus 75 ~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~ 113 (150)
.++. +..-.+....+++.++.|+.+ ..+..||+.+++
T Consensus 375 ~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 375 PLIF--PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CcCc--CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 1111 111112234567777777732 357888887654
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=2.4 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.4
Q ss_pred eeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+++.++|+-=...|.+.+.+.+..+.+..+
T Consensus 223 ~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 223 SVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred EEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 33778888888888899988877666554444
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.55 E-value=2.2 Score=31.53 Aligned_cols=65 Identities=8% Similarity=0.057 Sum_probs=42.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCC-CeEEEEEc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSW 66 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~~~ 66 (150)
.|+|....|++-.....--++++.... .++.-....+.|.|.+|.+||++|+++-.+ =.-++||-
T Consensus 119 VWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 119 VWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 588888888776655444556655432 222222456889999999999998766333 34556763
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.18 E-value=2.8 Score=31.89 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred cceEEEEcCCCeEEEEEcCC-------C----e---------eeeeeccCCCcEEEEEEE--eCCCEEEeecCCCeEEEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~ 64 (150)
...|+.+..||.|.+|..+. . + +... ........+++++ ...+.+|+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788888999999997632 0 0 0011 1124477889998 778888888888888887
Q ss_pred Eccccc-cccc-ccccccccceeEee---ec-C--CC-EEEEecCCCcEEEEec
Q 031924 65 SWGYFK-DCSD-RFVGLSPNSVDALL---KL-D--ED-RVITGSENGLISLVGI 109 (150)
Q Consensus 65 ~~~~~~-~~~~-~~~~~~~~~v~~~~---~~-~--~~-~l~~~~~dg~i~~~d~ 109 (150)
-+.... +... .-.. +...|-++. .. + |. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 654211 1111 0001 223344433 11 2 32 7788888999999887
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.08 E-value=2.3 Score=30.25 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=79.8
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeee---eeec-cCCCcEEEEEEEe-----CCCEEEeecCCCeEEEEEccccc-c----
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQ---TRSE-FSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~-~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~-~---- 71 (150)
+...|++|+.+|.++||+...+... ..++ .-..+|..+...+ +...|++ =.-.++.+|.+...+ .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3458999999999999998664311 1111 2245777776543 2334444 356788888873221 1
Q ss_pred ---cccccccccc---cceeEee-e---cC-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 72 ---CSDRFVGLSP---NSVDALL-K---LD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 72 ---~~~~~~~~~~---~~v~~~~-~---~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+..+.. |. ...+.+. . .. ...++.-+.||.+.+++-+.....+.++. .- -..-+.|.+....+++
T Consensus 115 ~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l-lPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL-LPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC-CCcCeEEeecCCEEEE
Confidence 1111111 21 1122122 1 12 36888999999999998755443333332 12 1344788888888888
Q ss_pred cccccccc
Q 031924 141 GFLSLNVN 148 (150)
Q Consensus 141 ~~~~~~v~ 148 (150)
++.++.+.
T Consensus 192 ~sss~~l~ 199 (418)
T PF14727_consen 192 ASSSWTLE 199 (418)
T ss_pred ecCceeEE
Confidence 88776553
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.01 E-value=1.4 Score=32.02 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 48 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
...++++++..|-|++||- -..+....+++ -...|..+. ..+|.++++.+. ..+.+.|++
T Consensus 572 esGyIa~as~kGDirLyDR-ig~rAKtalP~-lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDR-IGKRAKTALPG-LGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehh-hcchhhhcCcc-cccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 3568999999999999994 23344455666 677788777 778888877664 466666653
No 427
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=92.46 E-value=0.41 Score=20.13 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.8
Q ss_pred CEEEEecCCCcEEEEeccCCeeeeec
Q 031924 93 DRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 93 ~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..++.++.+|.++.+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777888999999999888876543
No 428
>PRK10115 protease 2; Provisional
Probab=92.46 E-value=3.8 Score=31.22 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=56.8
Q ss_pred eeecCcceEEEEc-----CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------CeEEEEEccccc
Q 031924 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~ 70 (150)
.|+||+++|+.+. ....|++.|+.+++.+........ ..++|.+|++.|+-...+ ..++.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 5789999888752 234588889988753322111111 458999998876554332 356667775331
Q ss_pred ccc-ccccccccccee-Eee-ecCCCEEEEecC---CCcEEEEec
Q 031924 71 DCS-DRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (150)
Q Consensus 71 ~~~-~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---dg~i~~~d~ 109 (150)
... ..+.. ...... ... +.+++.++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 111 12222 122222 222 436665544332 357888884
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.45 E-value=1.5 Score=32.21 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred CcceEEEEcCCCeEEEEEcCC----Ceeee-----------eec-----------cCCCcEEEEEEEe----CCCEEEee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRK----NTVQT-----------RSE-----------FSEEELTSVVLMK----NGRKVVCG 55 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~----~~~~~-----------~~~-----------~~~~~v~~~~~~~----~~~~l~~~ 55 (150)
+...++.+..||.+-...... +.... .+. .........+... +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777777888888877664 11110 000 1123455566665 67889999
Q ss_pred cCCCeEEEEEccccccc
Q 031924 56 SQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 56 ~~d~~i~i~~~~~~~~~ 72 (150)
+.|+++|+||+.+ +++
T Consensus 237 ~~D~~LRiW~l~t-~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLET-GQC 252 (547)
T ss_dssp ETTSEEEEEETTT-TCE
T ss_pred eCCCeEEEEECCC-CeE
Confidence 9999999999964 344
No 430
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.16 E-value=0.54 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=18.9
Q ss_pred cCCCcEEEEEEEeCCCEEE-eecCC--CeEEEE
Q 031924 35 FSEEELTSVVLMKNGRKVV-CGSQS--GTVLLY 64 (150)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~i~ 64 (150)
.....-....|+|||+.|+ +...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999998876 44455 555555
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.80 E-value=1.7 Score=25.64 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.6
Q ss_pred EEEEEeCCCEEEeecCCCeEEEEEcccccc-------cccccccccccceeEee--ec----CCCEEEEecCCCcEEEEe
Q 031924 42 SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSVDALL--KL----DEDRVITGSENGLISLVG 108 (150)
Q Consensus 42 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~~~v~~~~--~~----~~~~l~~~~~dg~i~~~d 108 (150)
.-+|......|++++.-|+|.|++...... .+..+ . -...|+++. .. ....|+.|+ ...+..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-N-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-N-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-E-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 345666667788999999999998643211 12222 2 345677765 21 245677766 45788999
Q ss_pred ccCCeeeeeccCCCCcceeEEEEcC----CccEEEeccc
Q 031924 109 ILPNRIIQPIAEHSEYPIESLGIAS----VLCFINSGFL 143 (150)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~s~~~ 143 (150)
+..+..+..-..+ + .++++.+-. +..++..|+.
T Consensus 80 V~~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 80 VENNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred cccCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECce
Confidence 9876644333222 3 477776642 3445555553
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=0.86 Score=36.14 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
.|+|.-. ..+....|+.|++..+................++++|+|.|+.++.|...|++.=|... .++...+.+.
T Consensus 162 ~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp 239 (1405)
T KOG3630|consen 162 VWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPP 239 (1405)
T ss_pred cccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCC
Confidence 3555322 33445577777777665433322222345578999999999999999999999888753 2333333220
Q ss_pred --cccceeEeeecCCC
Q 031924 80 --SPNSVDALLKLDED 93 (150)
Q Consensus 80 --~~~~v~~~~~~~~~ 93 (150)
....|.+++....+
T Consensus 240 ~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCCCcceeEEEEecce
Confidence 12456666644333
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=91.49 E-value=3.3 Score=28.46 Aligned_cols=137 Identities=9% Similarity=-0.025 Sum_probs=67.3
Q ss_pred eeecCcceEEEEcCCCeEEE-EEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc--
Q 031924 2 TFAADAMKLLGTSGDGTLSV-CNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-- 78 (150)
.+.|++.+++++ ..|.+.. +|-....-..........+.++.+.++++.++++ ..|.+++=.. ..+..-+....
T Consensus 179 ~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~-d~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP-DDLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccC-CCCCccccccCCc
Confidence 345666555555 4444432 2221111222222345678999999998876665 5676653222 12221111111
Q ss_pred c-cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC--CCCcceeEEEEcCCccEEEeccc
Q 031924 79 L-SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~-~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
. ....+..+. .+++..++ .+.+|.+.. ....++..+.... ........+.|..+++.+++|..
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 0 112344555 44555544 556776553 3344444333321 11113777888887888877654
No 434
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.46 E-value=2.8 Score=27.50 Aligned_cols=126 Identities=9% Similarity=-0.005 Sum_probs=63.7
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEccccc---ccc---cccccccccceeEeee
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFK---DCS---DRFVGLSPNSVDALLK 89 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~---~~~---~~~~~~~~~~v~~~~~ 89 (150)
-.+||+.+++....-........+-.+.+||+.+.+|+.. ..+++|+..... ... ..+.. ...--+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 3467777765432212222333444566899999988752 457888753200 111 11111 1111122336
Q ss_pred cCCCEEEEecCCC-cEEEEeccC--Cee--eeeccC----CCCcceeEEEEcCCccEEEeccccc
Q 031924 90 LDEDRVITGSENG-LISLVGILP--NRI--IQPIAE----HSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 90 ~~~~~l~~~~~dg-~i~~~d~~~--~~~--~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
++|+.|+.|+.+. ...+|.... ... +..+.. ....--..+...|+|++++.+....
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS 191 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc
Confidence 7899999888775 344454321 111 111110 1111133567789999988776544
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=91.24 E-value=3.5 Score=28.32 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEE-EEcccccc-cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLL-YSWGYFKD-CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~ 113 (150)
...+.++.+.+++.+++++ ..|.+.. ++- .++ ....... ....+..+. .++++.++.+ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~--gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP--GQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC--CCCeEEEeeCC-CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 4568889998988766555 4555543 221 111 1111112 344566665 5667766654 56776543333444
Q ss_pred eeeeccCC---CCcceeEEEEcCCccEEEeccc
Q 031924 114 IIQPIAEH---SEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 114 ~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
........ ....+..+.+.|++..++.|..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCC
Confidence 33322111 2234778899998887776543
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.21 E-value=0.046 Score=38.79 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|+|+.++..++ .+...+.+.+||+.+......-.+....-.-+.|++.+..++.+...|.+.+|+.+...+.. .. |+
T Consensus 80 m~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~-Gk 157 (615)
T KOG2247|consen 80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VM-GK 157 (615)
T ss_pred hhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hh-cc
Confidence 45666666444 45578899999998764322111222222237899988899999999999999975332222 21 22
Q ss_pred cccceeEeeecCCCEEEEecCC
Q 031924 80 SPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d 101 (150)
|..++++.+..-.++.+.++.|
T Consensus 158 h~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred cccceeEEEecccceeeecCcH
Confidence 5555666653323333434333
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.10 E-value=2 Score=27.49 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=40.6
Q ss_pred ceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCC---C---eEEEE-Ecc
Q 031924 8 MKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS---G---TVLLY-SWG 67 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~i~-~~~ 67 (150)
..|+.+.....|.+|++...+ ....+. .-+.|..+.++..|+++++--.+ . .+|+| +++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 445454567789999998433 344444 34889999999999999986322 2 67776 443
No 438
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.32 E-value=0.92 Score=20.04 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.9
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeecc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~ 35 (150)
.++.++.+|.+.-+|.++|+.+...+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 455668999999999999998876653
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=5.4 Score=28.86 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=55.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
|.|++|.+.+++--.+++|.+++....+.. ..-+.....+....|..+ .-++..+..| +.+|......+.++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 479999999999999999999997543322 222333456889999876 4455444443 5556553333455555
Q ss_pred ccccccceeEee-ecCCC
Q 031924 77 VGLSPNSVDALL-KLDED 93 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~ 93 (150)
+. +...|+... .++.+
T Consensus 150 ks-~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETA 166 (657)
T ss_pred hh-cccCccEEEEccccc
Confidence 55 655666544 44444
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.22 E-value=4.2 Score=27.48 Aligned_cols=104 Identities=9% Similarity=0.009 Sum_probs=60.1
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec-CCCEEEEecCCCcEEEEeccCC
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.+....+.++.|+|+.+.|++......-.++- ...|+.+.+++-..-.-...+... +++++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44556699999999999888877766665553 345777777752001111223322 4445555555777887766443
Q ss_pred e----------eeeeccCCCCcceeEEEEcCCccEEE
Q 031924 113 R----------IIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 113 ~----------~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. .+...... ..+...++|+|..+.|.
T Consensus 161 t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~ 196 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLF 196 (316)
T ss_pred ccEEeccceEEeccccCCC-CcCceeeecCCCCceEE
Confidence 1 11122121 22578899998665443
No 441
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=90.11 E-value=4.6 Score=31.60 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=40.8
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCC-----eEEEEEcccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKD 71 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~i~~~~~~~~ 71 (150)
+.+.....+.|.+-|.........-.....++..-+|||||++|+- .+.++ .|++-++++.+.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~ 389 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS 389 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC
Confidence 3333333458888888765544331345778899999999999975 44443 477778765543
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.09 E-value=3.5 Score=26.41 Aligned_cols=46 Identities=2% Similarity=0.043 Sum_probs=33.3
Q ss_pred CCEEEEecCCCcEEEEecc--CCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 92 EDRVITGSENGLISLVGIL--PNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 92 ~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
+.++++ ...+.|.+|++. ..+.+..+..- + .|..+.++..|+|++|
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVT 76 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEE
Confidence 344443 566789999987 34466666443 5 4899999999999987
No 443
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.94 E-value=5 Score=27.90 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=60.8
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccC--CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc-cee
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~v~ 85 (150)
.++.+..+|.|.-+|.++++.+...... ...+..-.+..+|+ ++.++.++.+..+|.+ .++..-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~-~G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAS-TGTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECC-CCcEEEEEec-CCCeEEe
Confidence 4455568888999999988766433322 13333334444565 8888899988888864 3555544443 221 011
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.-.-.....+...+.++.+.-.+..+++....
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 11111233444444678888888777766544
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.87 E-value=5.4 Score=28.26 Aligned_cols=103 Identities=7% Similarity=-0.099 Sum_probs=57.0
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-----cccccccc-cccceeEeeecCCCEEEEecCCCcEEEEec
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-----CSDRFVGL-SPNSVDALLKLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~ 109 (150)
....+..+.+.+++..++++ ..|.+..=+ . .++ ........ ....+..+...+.+.++..+..|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~- 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYVSK-G-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST- 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEEec-C-CCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-
Confidence 34578899999988877666 556654322 1 222 11111110 11235566544444555566778766553
Q ss_pred cCCeeeeecc---CCCCcceeEEEEcCCccEEEeccc
Q 031924 110 LPNRIIQPIA---EHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 110 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++..+... .-.. +...+.|.++++.+++|..
T Consensus 355 D~G~tW~~~~~~~~~~~-~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 355 DGGKSWKRDKGADNIAA-NLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred CCCcceeEccccCCCCc-ceeEEEEcCCCceEEEeCC
Confidence 3444433332 1122 4778999888888887654
No 445
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.72 E-value=4.8 Score=27.42 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=63.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC------CC-eeeeeecc-----CCCcEEEEEEEeCCCE------------EEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR------KN-TVQTRSEF-----SEEELTSVVLMKNGRK------------VVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~~~~ 56 (150)
|+++|.+.+-++....+...+||.. .. .....+.. .....+.+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5788988888888889999999987 12 22333331 1335677777743322 56778
Q ss_pred CCCeEEEEEcccccc----ccccccccccccee---Eee-ecCCCEE-EEecCCCcEEEEecc
Q 031924 57 QSGTVLLYSWGYFKD----CSDRFVGLSPNSVD---ALL-KLDEDRV-ITGSENGLISLVGIL 110 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~----~~~~~~~~~~~~v~---~~~-~~~~~~l-~~~~~dg~i~~~d~~ 110 (150)
+||+|.-|....... ....+.......+. ++. ...+++| ++--.+++|.++|-.
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 999999998531111 11111110123343 222 2223444 444468899999864
No 446
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.67 E-value=3.3 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.9
Q ss_pred cEEEEEEEeCC------CEEEeecCCCeEEEEEcc
Q 031924 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~i~~~~ 67 (150)
.+..++|||.| ..|++.+.++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67788898853 357788888899888753
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=89.35 E-value=6.6 Score=28.51 Aligned_cols=129 Identities=10% Similarity=-0.111 Sum_probs=61.1
Q ss_pred CcceEEEEcCC--CeEEEEEcCCCeeeeeeccCCCcE-EEEEEEeCCCEEEeecCCC---eEEEEEccccccccc--ccc
Q 031924 6 DAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEEL-TSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSD--RFV 77 (150)
Q Consensus 6 ~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~--~~~ 77 (150)
+++..+.|+.+ ..+..||..+++-... ..-..+. ......-+|+..+.|+.++ .+..||.+.. +... .+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM-PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEEC-CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCC
Confidence 45555566542 4577788766543211 1111111 1122233566667777553 4667887532 2221 111
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. +..-.++...++.+.+.|+ .+.+||..+++ .+..+..... .. .++ --+++..+.||.+
T Consensus 396 ~--~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 396 Y--PHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred C--ccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-cc-EEE-EECCEEEEECCcC
Confidence 1 1111133355666667664 46778887654 2222221111 12 222 3467788888754
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.96 E-value=11 Score=30.31 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=63.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~- 78 (150)
+..|-..++++| ....+++||+-..+.++..+ .....|+.+.+ .+.++++|+..-.+.++-.+..++....+..
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 345555566666 45599999998876654332 22345555554 4677888887666766555433444444432
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEec
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~ 109 (150)
.-+..++++...+-..++.+..=|.+.+..+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0244566666666677777777777777654
No 449
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.93 E-value=1.3 Score=24.14 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=24.7
Q ss_pred cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 99 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
..+|.+.-||+.+++..-.+.. -.+ .+.+++++|+.+++.
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~f-pNGVals~d~~~vlv 73 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYF-PNGVALSPDESFVLV 73 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESS-EEEEEE-TTSSEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCc-cCeEEEcCCCCEEEE
Confidence 4567888899988774333322 133 778999999997654
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.73 E-value=5.5 Score=26.78 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec------CCCeEEEEEccccccccccccc----cccccee
Q 031924 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVG----LSPNSVD 85 (150)
Q Consensus 16 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~----~~~~~v~ 85 (150)
-..|.+||....+-..--..-.+.|+++.|..+.+.++.|. ....+-.||+... .-..+.+ .-+.++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCCcEE
Confidence 45799999887765544444567899999997666666664 3456778887532 1112221 0235566
Q ss_pred Eee--ecCCC-EEEEec-CC--CcEEEEeccC
Q 031924 86 ALL--KLDED-RVITGS-EN--GLISLVGILP 111 (150)
Q Consensus 86 ~~~--~~~~~-~l~~~~-~d--g~i~~~d~~~ 111 (150)
.+. ..++. ..+.|. .+ ..+..||-..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 554 33443 444443 23 3566676543
No 451
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.59 E-value=9.9 Score=29.53 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=44.4
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCe-----ee-------eee-c--cCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT-----VQ-------TRS-E--FSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~-------~~~-~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
++|+| +.+.||+....|...||++.... .. ..+ . ...+.-..+.|.++...|++.+.. .+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEE
Confidence 57888 56799999999999999992211 11 111 0 011233478888887777777554 67888
Q ss_pred Ecccc
Q 031924 65 SWGYF 69 (150)
Q Consensus 65 ~~~~~ 69 (150)
|++..
T Consensus 230 d~~~~ 234 (765)
T PF10214_consen 230 DFESN 234 (765)
T ss_pred ECCCC
Confidence 98643
No 452
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.57 E-value=2.1 Score=23.28 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 14 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
..+|.+.-||..+++....+.+ -...+.++.++|+.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 3457888889888865433333 4467899999999977654
No 453
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.16 E-value=12 Score=29.84 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccccceeEeeecCCC
Q 031924 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDED 93 (150)
Q Consensus 15 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 93 (150)
-...|++|++.+++.++.-..+..++..+.....|..+++|+.=+.+.+...+... .........++.+++++...+++
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD 925 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc
Confidence 56689999999887666555667788899999999999999987777765543221 22222221167778777766777
Q ss_pred EEEEecCCCcEEEEec
Q 031924 94 RVITGSENGLISLVGI 109 (150)
Q Consensus 94 ~l~~~~~dg~i~~~d~ 109 (150)
.++-+..+|.+.+...
T Consensus 926 ~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 926 TYLGAENSGNLFTVRK 941 (1096)
T ss_pred eEEeecccccEEEEEe
Confidence 7777777888777643
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=87.46 E-value=9.1 Score=27.83 Aligned_cols=103 Identities=12% Similarity=-0.003 Sum_probs=51.2
Q ss_pred cceEEEEcCC-----CeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCC--CeEEEEEccccc-cccccc
Q 031924 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFK-DCSDRF 76 (150)
Q Consensus 7 ~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~-~~~~~~ 76 (150)
+..++.|+.+ ..+..||..+++-.. .+....... ++ ..-++...+.|+.+ ..+..||..... .....+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 3445556543 256678887765322 111111111 12 23467766777754 357778764221 111122
Q ss_pred ccccccceeEeeecCCCEEEEecCCC---cEEEEeccCCe
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENG---LISLVGILPNR 113 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~ 113 (150)
+. +-.-.+....++++.+.|+.++ .+..||+.+.+
T Consensus 350 ~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 350 LK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 11 1111123356778888887654 46678876654
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.78 E-value=8.1 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=21.8
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
....|+|.|+|+.+++ ...|.|++++.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence 3578999999887665 46999999983
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=6 Score=29.15 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=43.6
Q ss_pred eeecCcceEEEEcCCCeEEEEE---------cCCCeee--eee-------c--cCCCcEEEEEEEeCC---CEEEeecCC
Q 031924 2 TFAADAMKLLGTSGDGTLSVCN---------LRKNTVQ--TRS-------E--FSEEELTSVVLMKNG---RKVVCGSQS 58 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d---------~~~~~~~--~~~-------~--~~~~~v~~~~~~~~~---~~l~~~~~d 58 (150)
..++.|..++-.+.+|-+.++= ++.++.. .+. . ...-.+..++|+|+. ..+..-+.|
T Consensus 110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 3577888888888887666543 1223221 111 1 111256788999974 678888899
Q ss_pred CeEEEEEccc
Q 031924 59 GTVLLYSWGY 68 (150)
Q Consensus 59 ~~i~i~~~~~ 68 (150)
..+++||+..
T Consensus 190 nviRiy~lS~ 199 (741)
T KOG4460|consen 190 NVIRIYSLSE 199 (741)
T ss_pred cEEEEEecCC
Confidence 9999999853
No 457
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=85.58 E-value=2.2 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=15.4
Q ss_pred CcceEEEEcCCCeEEEEEcCC
Q 031924 6 DAMKLLGTSGDGTLSVCNLRK 26 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~ 26 (150)
.+..++.++.||++..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999998763
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.67 E-value=10 Score=25.80 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=31.2
Q ss_pred CcceEEEEcC-----CCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCC----eEEEEEccc
Q 031924 6 DAMKLLGTSG-----DGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG----TVLLYSWGY 68 (150)
Q Consensus 6 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~~~~~ 68 (150)
+++..+.|+. ...+..||+.+.+-... +.. ...........+++..+.|+.++ .+..||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 3445555543 24677888876543221 111 11222222344566677777653 345788753
No 459
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=84.44 E-value=2 Score=17.50 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=14.1
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
..+++.+++|+.+++-+.+..|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3556666666655555555555543
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.92 E-value=18 Score=28.01 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccc----------ccc-c-------cccccccceeEee-ec---CCCEEE
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD----------CSD-R-------FVGLSPNSVDALL-KL---DEDRVI 96 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~----------~~~-~-------~~~~~~~~v~~~~-~~---~~~~l~ 96 (150)
.|..+.++|+|..++..+..|...+.=.+.+++ ... . +.......|..+. +| ++..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 577889999999999888877555543322211 010 0 0110122344333 44 357888
Q ss_pred EecCCCcEEEEeccC
Q 031924 97 TGSENGLISLVGILP 111 (150)
Q Consensus 97 ~~~~dg~i~~~d~~~ 111 (150)
.-..|+.+|+||+..
T Consensus 166 vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 166 VLTSDNTLRLYDISD 180 (717)
T ss_pred EEecCCEEEEEecCC
Confidence 999999999999964
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.56 E-value=5.7 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
....++++.-+|.++.++.+.+||++++|++.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeec
Confidence 34567788888999999999999999999984
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.48 E-value=12 Score=25.73 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=38.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeee---ee-eccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQ---TR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
.+.++++.-..+.|....++.+..+ .. +......+..+++.|||...++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4567777777788888888754322 22 223344799999999999888887788764
No 463
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.44 E-value=12 Score=25.49 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=42.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-cEE----EEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT----SVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~----~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
.++|.+|+++-.-..|.+.|.++++.+..+.+... ... ..++-.+-+++-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 45778998887788999999999999888876522 111 1333333444444567788999984
No 464
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=83.15 E-value=5.8 Score=23.50 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=22.6
Q ss_pred eecCcceEEEEc-CCCeEEEEEcCCCee-eeeec--cCCCcEEEEEEEeC
Q 031924 3 FAADAMKLLGTS-GDGTLSVCNLRKNTV-QTRSE--FSEEELTSVVLMKN 48 (150)
Q Consensus 3 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~--~~~~~v~~~~~~~~ 48 (150)
|++|.+.|+.++ +|+.|+.|.+...+. +..+. .......++++.|.
T Consensus 18 yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 18 YDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp E-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred EcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 567777766655 799999999987631 22222 23445667777774
No 465
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=13 Score=25.46 Aligned_cols=132 Identities=8% Similarity=0.043 Sum_probs=74.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--ccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPN 82 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~ 82 (150)
+++...+..+.-++|.|+.+......+. ...+.-.+ +.-.|++..++..|.-+.++|+....+ ...+... +.
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~--~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL--PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc--CC
Confidence 4566777777889999987754322111 11233333 344688998888665566778864332 1222222 11
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.-+.-....|++-..+..|+-+.+.|+.... .+.... ... .+.++..+++-.+++.....
T Consensus 172 ~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~-g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 172 GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP-GTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC-ceEEEEecCCeeEEEEcccc
Confidence 1111113457777778889999999986433 222221 111 37777888877777655443
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.80 E-value=14 Score=25.84 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=51.1
Q ss_pred CcEEEEEEEeCCCEEEeec-----------CCC-eEEEEEccc-cccc--ccccccccccceeEee-ecCCCEEEEecCC
Q 031924 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDALL-KLDEDRVITGSEN 101 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~i~~~~~-~~~~--~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d 101 (150)
.....++|.++|+.+++-. ..+ .|.+++-.. .++. ...+.. .......+. .+++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence 4567889999999777643 223 676665321 2221 123322 222334454 4555 444 4433
Q ss_pred CcEEEE-eccC-------Ce-eeeeccCC----CCcceeEEEEcCCccEEEecc
Q 031924 102 GLISLV-GILP-------NR-IIQPIAEH----SEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 102 g~i~~~-d~~~-------~~-~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.|..+ |... .+ .+..+... .. ....++|.|||.+.++-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc-cccCceECCCCCEEEecc
Confidence 44444 4421 11 22223221 12 377899999998777555
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.85 E-value=17 Score=26.37 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=32.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeee----c-cCCCcEEEEEEEeCC
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS----E-FSEEELTSVVLMKNG 49 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~----~-~~~~~v~~~~~~~~~ 49 (150)
|+|.||++.|++--..|.|++++...+.. ...+ . ..+..+..++++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 57889998777764469999998655432 1111 1 135678999999873
No 468
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.65 E-value=15 Score=25.52 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=61.8
Q ss_pred eeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc---
Q 031924 2 TFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--- 76 (150)
Q Consensus 2 ~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--- 76 (150)
+++.|+++++.. +-...|.|.|++.++.+..+... +... .+-...+.|.+-|.||++.-..+...++..++-
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~ 177 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV 177 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence 456777777664 34567888888888777655432 2211 121123568888899999988887555543221
Q ss_pred -cccccccee--EeeecCCCEEEEecCCCcEEEEeccCC
Q 031924 77 -VGLSPNSVD--ALLKLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 77 -~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.. ..+++. ......+..++.-+.+|.|+-.|+...
T Consensus 178 F~~-~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 178 FDP-DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp SST-TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred cCC-CCcccccccceECCCCeEEEEecCCEEEEEeccCC
Confidence 11 112221 111234555666788999998887543
No 469
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=80.73 E-value=14 Score=24.56 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEE---EEEEeCCCEEEeecCCCeEEEE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS---VVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
..++.|.+++.|.|.|.+....+.+..-..-++.= -.|..-.-++++++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 36888889999999999887776665544333321 1222123457788899988763
No 470
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=80.32 E-value=7.8 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.3
Q ss_pred CCCcEEEEEEEeCCCEEEee
Q 031924 36 SEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~ 55 (150)
...+++.++|+||++.|++.
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 34578899999998887653
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.68 E-value=17 Score=24.94 Aligned_cols=99 Identities=8% Similarity=0.127 Sum_probs=56.4
Q ss_pred cEEEEEEEeCCCEEEeecCC------CeEEEEEcccccccccccc--c------------ccccceeEee-ecCCCEEEE
Q 031924 39 ELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFV--G------------LSPNSVDALL-KLDEDRVIT 97 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~--~------------~~~~~v~~~~-~~~~~~l~~ 97 (150)
...++++.++|.++++.-.+ ..|..++.. ++....+. . ........+. .++|+.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 34578887788887777666 778777754 44443331 0 0123455676 788885555
Q ss_pred ecC-----CC--c-------EEEE--eccC-Ceeeee--ccCC------CCcceeEEEEcCCccEEE
Q 031924 98 GSE-----NG--L-------ISLV--GILP-NRIIQP--IAEH------SEYPIESLGIASVLCFIN 139 (150)
Q Consensus 98 ~~~-----dg--~-------i~~~--d~~~-~~~~~~--~~~~------~~~~i~~~~~~~~~~~l~ 139 (150)
..+ |+ . ++++ |..+ ++.... +... ....+..+.+-+++++|+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 442 22 1 4554 5443 222222 1111 234688999999998776
No 472
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=77.19 E-value=9.5 Score=20.61 Aligned_cols=48 Identities=6% Similarity=0.071 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcc
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWG 67 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~ 67 (150)
+.|..||.+. .......-...+.+.++|++++|.+++ ..+.|++|...
T Consensus 36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4555566432 222222334568999999999886665 56899999864
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=76.17 E-value=22 Score=24.39 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCe------EEEEEccccccc------cc--ccccccccc-------eeEee-ecCCCE
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGT------VLLYSWGYFKDC------SD--RFVGLSPNS-------VDALL-KLDEDR 94 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~------i~i~~~~~~~~~------~~--~~~~~~~~~-------v~~~~-~~~~~~ 94 (150)
-+.+..+.+.+++..+++.+.+|. +..+++...... .. .+....... ...+. .+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999876666666667776 554554321000 00 111100011 11344 467777
Q ss_pred EEEecCC------CcEEEEeccCCeeeeecc--C------------CCCcceeEEEEcCCccEEEec
Q 031924 95 VITGSEN------GLISLVGILPNRIIQPIA--E------------HSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 95 l~~~~~d------g~i~~~d~~~~~~~~~~~--~------------~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+++.-.+ ..|+.++.. ++....+. . ........|+++|+|+.|.++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 7776667 778888865 44433321 0 112358899999999955543
No 474
>PLN02153 epithiospecifier protein
Probab=75.81 E-value=23 Score=24.35 Aligned_cols=25 Identities=0% Similarity=-0.059 Sum_probs=15.5
Q ss_pred ecCCCEEEEecCC-------------CcEEEEeccCCe
Q 031924 89 KLDEDRVITGSEN-------------GLISLVGILPNR 113 (150)
Q Consensus 89 ~~~~~~l~~~~~d-------------g~i~~~d~~~~~ 113 (150)
..++++++.++.+ ..+.+||+.+.+
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 4456666655432 468888887654
No 475
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.74 E-value=36 Score=26.52 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=47.1
Q ss_pred CeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee--c--cCCCCcceeEEEEcCC
Q 031924 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--I--AEHSEYPIESLGIASV 134 (150)
Q Consensus 59 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~--~~~~~~~i~~~~~~~~ 134 (150)
-.|+||+. .|+...++.. ....+-.+-..+...|++-..+|++++|++.... +.. + ..... .|..+.+..+
T Consensus 64 ~~I~If~~--sG~lL~~~~w-~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~-~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNI--SGQLLGRILW-KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMS-DIVECRFFHN 138 (829)
T ss_pred eeEEEEec--cccchHHHHh-cCCCeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccC-ceeEEEEecC
Confidence 35788886 3777777765 3334445555566778888899999999985322 222 1 11111 2555555556
Q ss_pred ccEEEeccc
Q 031924 135 LCFINSGFL 143 (150)
Q Consensus 135 ~~~l~s~~~ 143 (150)
|-.+.+.+.
T Consensus 139 GVavlt~~g 147 (829)
T KOG2280|consen 139 GVAVLTVSG 147 (829)
T ss_pred ceEEEecCC
Confidence 655554443
No 476
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=74.25 E-value=25 Score=23.97 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCCEEEeecC-----CCeEEEEEccccc-ccccccccccccceeEeeecCCCEEEEecCCC----cEEEEeccCCeeeee
Q 031924 48 NGRKVVCGSQ-----SGTVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGSENG----LISLVGILPNRIIQP 117 (150)
Q Consensus 48 ~~~~l~~~~~-----d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~ 117 (150)
+++..+.|+. ...+..||+.+.. ..+..++. ....-.++...++++.+.|+.++ .+..||+.+.+-. .
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-K 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-E
Confidence 4566666664 2467788875322 12222221 11111122355677888887664 3567888765421 2
Q ss_pred ccCC--CCccee---EE-EEcCCccEEEeccccc
Q 031924 118 IAEH--SEYPIE---SL-GIASVLCFINSGFLSL 145 (150)
Q Consensus 118 ~~~~--~~~~i~---~~-~~~~~~~~l~s~~~~~ 145 (150)
+... ...|.. .. ....++++++.|+.+.
T Consensus 201 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 201 VADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 2111 011111 11 2234678888888764
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.05 E-value=32 Score=25.17 Aligned_cols=79 Identities=8% Similarity=-0.026 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc--cee-Eee-ec
Q 031924 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN--SVD-ALL-KL 90 (150)
Q Consensus 15 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~v~-~~~-~~ 90 (150)
......++|.+ |.....+.........+...++|.+++... ..+..+|+. |+....... ... ... .+. -+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-T
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECC
Confidence 34455666643 444443332222211156677888776554 677777874 454433322 110 001 122 56
Q ss_pred CCCEEEEec
Q 031924 91 DEDRVITGS 99 (150)
Q Consensus 91 ~~~~l~~~~ 99 (150)
+|++|+.+.
T Consensus 200 nGn~L~l~~ 208 (477)
T PF05935_consen 200 NGNLLILAS 208 (477)
T ss_dssp TS-EEEEEE
T ss_pred CCCEEEEEe
Confidence 677666655
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=72.31 E-value=27 Score=27.06 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=42.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC--ee-eeeeccCCCcEEEEEEEeCC---C---EEEeecCCCeEEEEEc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN--TV-QTRSEFSEEELTSVVLMKNG---R---KVVCGSQSGTVLLYSW 66 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~--~~-~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~i~~~ 66 (150)
...++||+++....|.||-.... +. ......+..-|.+++|.++. . ++++++-.|.+.+|++
T Consensus 175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 56778999988888888765442 11 11111245568889998753 2 7788899999999887
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.89 E-value=46 Score=26.08 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=52.4
Q ss_pred cEEEEEEEeC-CCEEEeecCCCeEEEEEccccc-cccccc--c-cccccce-----------eEeeecCCCEEEEecCCC
Q 031924 39 ELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK-DCSDRF--V-GLSPNSV-----------DALLKLDEDRVITGSENG 102 (150)
Q Consensus 39 ~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~-~~~~~~--~-~~~~~~v-----------~~~~~~~~~~l~~~~~dg 102 (150)
+..+++|+|. .+.|+..+..|...+|++.... .....+ . . ..+.+ .-++..+-+.|+.++ ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 6778999985 5689999999999999992111 100010 0 1 11111 112233444555443 45
Q ss_pred cEEEEeccCCeeee-eccCCCCcceeEEEEcCC
Q 031924 103 LISLVGILPNRIIQ-PIAEHSEYPIESLGIASV 134 (150)
Q Consensus 103 ~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~ 134 (150)
.+.++|+.+..... .........|..+.-+|+
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 67888887665433 222222224777777776
No 480
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=71.79 E-value=14 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred CeeecCcceEEEEcCCC------eEEEEEc-----CCCeeeeeecc-CCCcEEEEEEEeCCCEEEee
Q 031924 1 MTFAADAMKLLGTSGDG------TLSVCNL-----RKNTVQTRSEF-SEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~------~i~i~d~-----~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 55 (150)
|.|.|.|++.+.....+ ..-+|.+ .+++....+.. ...+++..+|+||++.++++
T Consensus 505 l~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 505 LAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred eEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 46788888877753322 2234422 22333333333 34589999999999888765
No 481
>PLN02193 nitrile-specifier protein
Probab=70.43 E-value=39 Score=24.63 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=44.6
Q ss_pred CeEEEEEcCCCeeeeeecc---CCCc-EEEEEEEeCCCEEEeecCCC-----eEEEEEccccccccccc-ccccc--cce
Q 031924 17 GTLSVCNLRKNTVQTRSEF---SEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRF-VGLSP--NSV 84 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~-~~~~~--~~v 84 (150)
+.+..||+.+.+-...... .... -.++. .-+++..+.|+.++ .+..||+... +....- ++..+ ..-
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDK-KWFHCSTPGDSFSIRGG 321 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCC-EEEeCCCCCCCCCCCCC
Confidence 3577888877643221110 1111 12222 23456666676543 4667776432 211100 00000 001
Q ss_pred eEeeecCCCEEEEecCC----CcEEEEeccCCe
Q 031924 85 DALLKLDEDRVITGSEN----GLISLVGILPNR 113 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~ 113 (150)
..+...++++++.++.+ ..+.+||+.+.+
T Consensus 322 ~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred cEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 12234466777777755 468889987765
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=70.29 E-value=33 Score=23.69 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=49.6
Q ss_pred ecCCCeEEEEEccccccccccccccccccee---Eee-------ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc
Q 031924 55 GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD---ALL-------KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY 124 (150)
Q Consensus 55 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~---~~~-------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 124 (150)
|---|.|-+||.. ++.++++.. ..... .+. ...+.+|+---.||+|..+|..+++.+..+....+.
T Consensus 218 G~G~G~VdvFd~~--G~l~~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 218 GAGLGYVNVFTLN--GQLLRRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred CCCcceEEEEcCC--CcEEEEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 3344789999975 677777742 22222 111 346778887778999999999888877776544332
Q ss_pred -----ceeEEEEcC
Q 031924 125 -----PIESLGIAS 133 (150)
Q Consensus 125 -----~i~~~~~~~ 133 (150)
....+.|..
T Consensus 294 pi~i~GLWgL~fGn 307 (336)
T TIGR03118 294 PVKVDGLWSLTFGN 307 (336)
T ss_pred eEEecCeEEeeeCC
Confidence 256777764
No 483
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=70.03 E-value=36 Score=24.08 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=26.9
Q ss_pred ecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 98 GSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 98 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+..+|++.-||..++.. +.+...-.+ .+.++.|||+.+++.+=.
T Consensus 195 g~~~GRl~~YD~~tK~~-~VLld~L~F-~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVT-KVLLDGLYF-PNGLALSPDGSFVLVAET 238 (376)
T ss_pred CCCccceEEecCcccch-hhhhhcccc-cccccCCCCCCEEEEEee
Confidence 33567777777755432 333222233 667899999998876543
No 484
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=68.82 E-value=30 Score=22.74 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=56.4
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeee--------------eccCCCcEEEEE--EEeCCCEEEeecCCCeEEEEEcc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTR--------------SEFSEEELTSVV--LMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
.|+-+.+++- .|+.+.++++..-..... .......+...+ -...+...++.....++.+|.+.
T Consensus 44 l~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 44 LPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN 122 (275)
T ss_pred ecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE
Confidence 4554555555 458999999876432220 011122344444 11234444444455699999886
Q ss_pred ccc----ccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCee
Q 031924 68 YFK----DCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 68 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
... +..+.+.. +..+..+... ++.++.|..+ ...+.|+.++..
T Consensus 123 ~~~~~f~~~~ke~~l--p~~~~~i~~~-~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 123 DPRNSFSKLLKEISL--PDPPSSIAFL-GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred CCcccccceeEEEEc--CCCcEEEEEe-CCEEEEEeCC-ceEEEecCCCCc
Confidence 421 23344433 4555566533 5677777644 467788876554
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=65.42 E-value=51 Score=24.11 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=35.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe--ee---eeeccCCCcEEEEEEEeCCC-EEEeecCCCeEE
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT--VQ---TRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVL 62 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~--~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 62 (150)
++.+|+.+-..+.|....++..+ .. ..+.....+++.+...|||. .-+..+.+|.++
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~~~RiRdv~~~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKTNNRYRDVIASPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecCCCeeEEEEECCCCCEEEEEEcCCCccc
Confidence 46777777788888888886542 21 22222256899999999974 333344555543
No 486
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=64.88 E-value=12 Score=16.58 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=17.9
Q ss_pred eeEEEEcCCccEEEeccccc
Q 031924 126 IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 126 i~~~~~~~~~~~l~s~~~~~ 145 (150)
...++++++|+..++|...+
T Consensus 15 ~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred EEEEEECCCCCEEEEEeecC
Confidence 78899999999999998776
No 487
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=64.81 E-value=23 Score=28.09 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=31.1
Q ss_pred eeecCcceEEE-EcCCC-----eEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEE
Q 031924 2 TFAADAMKLLG-TSGDG-----TLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKV 52 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~-----~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l 52 (150)
+|||||+.|+- .+.++ .|.+-++.+.. -+.++.-....|..-....+|...
T Consensus 356 ~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ 413 (912)
T TIGR02171 356 DISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTV 413 (912)
T ss_pred cCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeE
Confidence 58999999987 44333 58888887632 233444444555555555555544
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=64.41 E-value=39 Score=22.36 Aligned_cols=80 Identities=6% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCCc
Q 031924 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLGIASVL 135 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 135 (150)
..++|.++|-...+...-.+.. .. |......+.....+ --.-.+||+.+++.. .+....+ + ...-.+-+||
T Consensus 7 ~~~~v~~~d~t~~g~s~~~~~~-~~----c~~~~~~~~~~~d~-~a~s~~yD~~tn~~r-pl~v~td~F-CSgg~~L~dG 78 (243)
T PF07250_consen 7 HNNKVIMFDRTNFGPSNISLPD-GR----CRDNPEDNALKFDG-PAHSVEYDPNTNTFR-PLTVQTDTF-CSGGAFLPDG 78 (243)
T ss_pred cCCEEEEEeCCCcccccccCCC-Cc----cccCccccccccCc-eEEEEEEecCCCcEE-eccCCCCCc-ccCcCCCCCC
Confidence 6778999996444433223322 11 22222212111111 112357898876643 2222222 2 3344677899
Q ss_pred cEEEecccc
Q 031924 136 CFINSGFLS 144 (150)
Q Consensus 136 ~~l~s~~~~ 144 (150)
+++.+|+..
T Consensus 79 ~ll~tGG~~ 87 (243)
T PF07250_consen 79 RLLQTGGDN 87 (243)
T ss_pred CEEEeCCCC
Confidence 999988763
No 489
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=64.31 E-value=38 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=18.4
Q ss_pred eeecCcceEEEEc-CCCeEEEEEcCCC
Q 031924 2 TFAADAMKLLGTS-GDGTLSVCNLRKN 27 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~i~i~d~~~~ 27 (150)
..|.|.++|..++ .+|.++.||+...
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCC
Confidence 4677888888765 7999999999763
No 490
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=63.52 E-value=10 Score=15.51 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=18.2
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
.+.+++.. ..++++++..+.+|+|.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 45666654 45788888889999874
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=63.24 E-value=57 Score=23.92 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=52.8
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc---EEEEEEEeCCCEEEeec----------------------CC
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE---LTSVVLMKNGRKVVCGS----------------------QS 58 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~----------------------~d 58 (150)
-++|.+++... ..+..+|+. |+.+......... =..+...|+|++|+.+. .+
T Consensus 156 l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~t 232 (477)
T PF05935_consen 156 LPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPT 232 (477)
T ss_dssp -TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TT
T ss_pred cCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCC
Confidence 45677766554 678888875 4444333222211 23555667777776655 22
Q ss_pred C-eEEEEEcccccccccc----------ccc--ccc--cceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 59 G-TVLLYSWGYFKDCSDR----------FVG--LSP--NSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 59 ~-~i~i~~~~~~~~~~~~----------~~~--~~~--~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
| .+..||+...-..... ..+ ... -.+.++. .+ ++.+++++..-..|...|.++++....+..+
T Consensus 233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 2 3345554321000000 000 011 1244565 44 6667777777778888898888877777554
Q ss_pred C
Q 031924 122 S 122 (150)
Q Consensus 122 ~ 122 (150)
.
T Consensus 313 ~ 313 (477)
T PF05935_consen 313 G 313 (477)
T ss_dssp T
T ss_pred C
Confidence 3
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.07 E-value=47 Score=26.29 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEE----Ecccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY----SWGYFKDCSDRFVGL 79 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~----~~~~~~~~~~~~~~~ 79 (150)
+...+..++.++.+.++.-. +.+.........+.-..+.+-+...-+..|..||++-.| +..-.+.....++.
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~- 624 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT- 624 (925)
T ss_pred CCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCcccccc-
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC--cceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--YPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~~ 144 (150)
...++.... ..+ +..++.+|.|.++...+....+....|.. ..|+.+.+...+-+++-.+.+
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
No 493
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=62.62 E-value=48 Score=22.82 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=19.7
Q ss_pred CeEEEEEccccc-ccccccccccccceeEeeecCCCEEEEecCC
Q 031924 59 GTVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 59 ~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 101 (150)
..+..||..+.. .....++. ....-.++...++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF-LGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCC-CcCCCceEEEECCEEEEEeeee
Confidence 467788875321 11222211 1111123335567777777753
No 494
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=62.51 E-value=36 Score=26.59 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=41.0
Q ss_pred ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec----cC--------CCC--c----ceeEEEEcCCccEEEeccc
Q 031924 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI----AE--------HSE--Y----PIESLGIASVLCFINSGFL 143 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~--------~~~--~----~i~~~~~~~~~~~l~s~~~ 143 (150)
.|.++. ..-+..++....||+|.++|..+.+.+... .. ..+ + ++..++|||.+..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 344555 334568888999999999998765433222 00 001 1 2345789999988887776
Q ss_pred cccc
Q 031924 144 SLNV 147 (150)
Q Consensus 144 ~~~v 147 (150)
.+.+
T Consensus 341 ~~~~ 344 (753)
T PF11635_consen 341 DGKT 344 (753)
T ss_pred CCCc
Confidence 6653
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=62.37 E-value=87 Score=25.72 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=37.4
Q ss_pred EEEEeCCCEEEeecCCCeEEEEEccccccccccccccc-ccceeEeeecCCCEEEEecCCCcEEE--EeccCCeee
Q 031924 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSVDALLKLDEDRVITGSENGLISL--VGILPNRII 115 (150)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~dg~i~~--~d~~~~~~~ 115 (150)
.++.|-..++.+| ....+++||+.. ++..++...++ +..|..+.. .+..++.|...-.+++ |+...++.+
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt-~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQT-YGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEee-cceEEEEeeccceEEEEEEecCCCeEE
Confidence 4556666666655 556999999963 35555443312 344444433 3445555554444444 444444443
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.13 E-value=21 Score=24.09 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=29.0
Q ss_pred CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 101 NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 101 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
...|.+||..+.+-...-..-.+ .|..+.|..+.++++.|.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~ 58 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTL 58 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEE
Confidence 44688888866553333223345 488999988888888886543
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=61.93 E-value=49 Score=22.75 Aligned_cols=55 Identities=5% Similarity=-0.066 Sum_probs=28.8
Q ss_pred ecCCCEEEEecCCC----------------------cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 89 KLDEDRVITGSENG----------------------LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 89 ~~~~~~l~~~~~dg----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++++++.|+.+. .+.+||..+.+- ..+...+...-...+..-++++++.|+.+
T Consensus 255 ~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W-~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 255 ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW-SKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc-cccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 45777778877531 456788765431 11111111011223344578888887764
No 498
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.85 E-value=66 Score=24.20 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=44.4
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc----------cc-------ccccccccee--Ee-eecC---CCEE
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----------DR-------FVGLSPNSVD--AL-LKLD---EDRV 95 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----------~~-------~~~~~~~~v~--~~-~~~~---~~~l 95 (150)
.|..+..++.|..++-.+.+|.+.++-.+.+|+-. .+ +-. ....++ .. ++|+ ...+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-ss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-SSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-cCCceeeeeccccCCccCCceE
Confidence 45677788999999999999988887633332111 00 001 111122 11 2332 3567
Q ss_pred EEecCCCcEEEEeccCCe
Q 031924 96 ITGSENGLISLVGILPNR 113 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~~~ 113 (150)
..-+.|..+|+||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 777889999999986544
No 499
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=61.21 E-value=47 Score=23.05 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=31.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
++++.++-+..|.+.-+|.++|+...... -.+....++|. |.++++|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEE
Confidence 56677777788888888877775443322 24566788887 7777665
No 500
>PLN02193 nitrile-specifier protein
Probab=61.10 E-value=62 Score=23.63 Aligned_cols=66 Identities=21% Similarity=0.021 Sum_probs=35.1
Q ss_pred CCCEEEeecCC----CeEEEEEccccc-cccccccc-ccccceeEeeecCCCEEEEecCC--------------CcEEEE
Q 031924 48 NGRKVVCGSQS----GTVLLYSWGYFK-DCSDRFVG-LSPNSVDALLKLDEDRVITGSEN--------------GLISLV 107 (150)
Q Consensus 48 ~~~~l~~~~~d----~~i~i~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~l~~~~~d--------------g~i~~~ 107 (150)
+++..+.++.+ ..+.+||+.+.. ..+..... ..+....+....++++++.|+.+ ..+.++
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 56666666654 458888875432 11111100 01111123335567788888853 247788
Q ss_pred eccCCe
Q 031924 108 GILPNR 113 (150)
Q Consensus 108 d~~~~~ 113 (150)
|+.+.+
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887655
Done!