BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031926
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2
SV=1
Length = 198
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151
>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2
SV=1
Length = 198
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151
>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2
SV=1
Length = 198
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151
>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2
SV=2
Length = 198
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/151 (66%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQ 151
>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1
Length = 189
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 117/152 (76%), Gaps = 8/152 (5%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTH 57
MGKAKK KF + KR + K+ L N++++ TKE ++ RN+P VSSALFF +
Sbjct: 1 MGKAKKTRKFG-----LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQY 55
Query: 58 NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 117
N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+
Sbjct: 56 NQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 115
Query: 118 ALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
AL++A+DPR +RL C+HKGTYADDCLV RV Q
Sbjct: 116 ALKLARDPRIKRLSCSHKGTYADDCLVHRVLQ 147
>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fcf1 PE=3 SV=1
Length = 192
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 112/149 (75%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
MGKAK KFA +K++I + + K+D +K ++ R +P ++S LFF N +
Sbjct: 1 MGKAKTTRKFAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELVREIPQMASNLFFQFNES 60
Query: 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
LGPPY V++DTNFINF +Q K+DL +G+M CLYAK PCI+DCVMAELEKLG +YR+ALR
Sbjct: 61 LGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALR 120
Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
IAKD RFERLPCTHKGTYADDC+V+RV Q
Sbjct: 121 IAKDERFERLPCTHKGTYADDCIVQRVMQ 149
>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum
GN=fcf1 PE=3 SV=1
Length = 194
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Query: 7 APKFAAMKKI-ITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPY 65
APK ++K+ T N ++ + ++D ++K+ + +S +FF++N AL PPY
Sbjct: 8 APKKVPLQKLNKTNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPY 67
Query: 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDP 125
V++DTNFINFSI +KLD+ +MDCLYAKC P I+DCV AE+E+LG K++VAL+I+KDP
Sbjct: 68 HVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKVALKISKDP 127
Query: 126 RFERLPCTHKGTYADDCLVERVT 148
RF+RL C+HKGTYADDC++ R+T
Sbjct: 128 RFQRLTCSHKGTYADDCIINRIT 150
>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2
SV=1
Length = 248
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L A+ C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERV 147
A IA+ + P +CL+ V
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMV 108
>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1
SV=2
Length = 249
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
A IA+ + P +CL+ V +
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEE 110
>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=utp23 PE=3 SV=1
Length = 260
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 53 LFFTHNTALG--PPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110
L T+ G PY+VLVD +F+ Q K+D++ + + P IT C + +L
Sbjct: 12 LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71
Query: 111 LGQKYRVALRIAKDPRFERLPCTH 134
+ + +RIAK FER C H
Sbjct: 72 KSDELKQEIRIAKS--FERRRCGH 93
>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2
SV=1
Length = 249
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERV 147
+ A IA+ + P +CL+ V
Sbjct: 75 ELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMV 108
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1
Length = 254
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 53 LFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112
L ++H PY+VLVD + + +L G+ L A IT C + L +
Sbjct: 14 LVYSHTFKFREPYQVLVDNQLVLECNNSNFNLPSGLKRTLQADVKVMITQCCIQALYET- 72
Query: 113 QKYRVALRIAKDPRFERLPCTH 134
+ A+ +AK +FER C H
Sbjct: 73 -RNDGAINLAK--QFERRRCNH 91
>sp|Q58716|VAPC4_METJA Putative ribonuclease VapC4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=vapC4 PE=3 SV=1
Length = 131
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL--------GQKYR 116
Y+++ DTNF+ + ++K++ + + L K I + ELE+L +K
Sbjct: 2 YKIVPDTNFLIYVFKHKINFDYEIERALNTKFEIVILSPIKEELERLLKSRDLKGKEKLA 61
Query: 117 VALRIAKDPRFERLPCTHKGTYADDCLV 144
V L +AK ++ + T YAD+ ++
Sbjct: 62 VNLALAKIKNYKLVDYT--ANYADEAIL 87
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 95 KCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTY 138
K TP IT C +A L LG RV L + PRF KGT+
Sbjct: 153 KITPTITHCSLATLIGLG--IRVRLERSLPPRFRITILLKKGTH 194
>sp|P26954|IL3B2_MOUSE Interleukin-3 receptor class 2 subunit beta OS=Mus musculus
GN=Csf2rb2 PE=2 SV=1
Length = 878
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 20 RAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTAL-GPPYRVLVDTNFINF 76
R + +KE + NP+K L ++ P S A F T N AL GP R+L + +++
Sbjct: 471 RTYRKWKEKIPNPSKSLLFQDGGKGLWPPGSMAAFATKNPALQGPQSRLLAEQQGVSY 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,453,112
Number of Sequences: 539616
Number of extensions: 2079738
Number of successful extensions: 4537
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4517
Number of HSP's gapped (non-prelim): 23
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)