Query 031926
Match_columns 150
No_of_seqs 210 out of 426
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3165 Predicted nucleic-acid 100.0 2.6E-61 5.6E-66 380.1 7.9 148 1-149 1-148 (195)
2 KOG3164 Uncharacterized protei 100.0 6.4E-31 1.4E-35 215.2 6.5 95 52-148 13-108 (236)
3 COG1412 Uncharacterized protei 99.9 1.2E-27 2.7E-32 183.7 6.3 94 55-149 1-96 (136)
4 PF04900 Fcf1: Fcf1; InterPro 99.5 8.6E-15 1.9E-19 105.7 3.5 61 89-149 1-63 (101)
5 smart00670 PINc Large family o 96.8 0.0082 1.8E-07 42.0 7.7 41 67-112 1-41 (111)
6 PF13638 PIN_4: PIN domain; PD 95.5 0.049 1.1E-06 39.8 6.1 37 67-112 1-37 (133)
7 PF13470 PIN_3: PIN domain 92.6 0.27 5.8E-06 35.0 4.8 46 66-111 1-47 (119)
8 TIGR00305 probable toxin-antit 91.5 0.53 1.1E-05 33.9 5.2 45 66-111 1-47 (114)
9 PF01850 PIN: PIN domain; Int 87.1 1.4 3.1E-05 30.4 4.5 47 67-114 1-47 (121)
10 TIGR00028 Mtu_PIN_fam Mycobact 86.1 0.67 1.5E-05 33.4 2.5 43 67-110 2-48 (142)
11 COG2402 Predicted nucleic acid 85.4 1.1 2.4E-05 34.5 3.5 47 67-113 2-53 (135)
12 COG1848 Predicted nucleic acid 73.5 7.2 0.00016 28.6 4.4 47 66-112 1-51 (140)
13 COG1569 Predicted nucleic acid 71.4 9.7 0.00021 29.9 4.8 45 66-110 2-47 (142)
14 PF14367 DUF4411: Domain of un 66.0 7.6 0.00016 30.1 3.3 48 68-115 2-54 (162)
15 PRK13725 plasmid maintenance p 60.0 13 0.00029 27.6 3.6 42 67-110 4-45 (132)
16 PF09713 A_thal_3526: Plant pr 53.8 35 0.00077 22.5 4.4 46 72-118 3-50 (54)
17 COG0337 AroB 3-dehydroquinate 40.3 17 0.00038 32.3 1.7 16 60-75 155-170 (360)
18 COG4496 Uncharacterized protei 38.2 36 0.00078 25.1 2.7 27 98-124 30-56 (100)
19 PRK13764 ATPase; Provisional 34.1 44 0.00095 31.7 3.3 19 95-113 26-44 (602)
20 PF02877 PARP_reg: Poly(ADP-ri 34.0 20 0.00043 27.0 0.9 36 50-90 71-109 (133)
21 TIGR01589 A_thal_3526 uncharac 32.7 1.3E+02 0.0028 20.1 4.6 48 72-119 6-54 (57)
22 COG1487 VapC Predicted nucleic 31.8 1.2E+02 0.0026 21.9 4.8 41 65-110 2-44 (133)
23 COG5573 Predicted nucleic-acid 31.7 46 0.001 26.1 2.6 43 66-110 5-52 (142)
24 PRK14021 bifunctional shikimat 25.8 37 0.0008 31.3 1.3 17 60-76 330-346 (542)
25 cd01437 parp_like Poly(ADP-rib 22.6 50 0.0011 29.0 1.5 38 50-92 72-112 (347)
26 PF01761 DHQ_synthase: 3-dehyd 20.9 39 0.00084 28.4 0.5 16 60-75 90-105 (260)
27 PF00739 X: Trans-activation p 20.0 35 0.00075 26.6 0.0 33 96-135 108-140 (142)
No 1
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=100.00 E-value=2.6e-61 Score=380.15 Aligned_cols=148 Identities=73% Similarity=1.174 Sum_probs=140.4
Q ss_pred CCccccchhHHHHhhccCccccccccccccCCCCccCCCCCCCcccCCCchHHHHHHhhCCCCCeEEEechHHHHHHHHc
Q 031926 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQN 80 (150)
Q Consensus 1 mg~~k~~~k~a~~k~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fy~~n~~frpPYqVLvDtNFi~~~~q~ 80 (150)
|||+|||||||.||+||+.+ .|++.+++.+.++++...++.++++||+||++||+||..++|||+|||||||||+|+++
T Consensus 1 mgk~kktrk~~~vk~~i~~k-~~~~~~dr~k~k~K~d~~~~~~~e~Pq~~s~lffqyn~~L~PPy~vivDTNFINfsi~~ 79 (195)
T KOG3165|consen 1 MGKAKKTRKFAVVKRMIKTK-QRLKKKDRVKNKEKKDENELLTREVPQVPSALFFQYNTTLGPPYHVIVDTNFINFSIQN 79 (195)
T ss_pred CCcccchHHHHHHHHHHHHH-HHHHHHHhhhcccCCCchhhhcccCcCcchhHHHhcccccCCCeEEEEecchhhHHHHh
Confidence 99999999999999999887 88888887665555555667799999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecCCCCCCHHHHHHHHhhh
Q 031926 81 KLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149 (150)
Q Consensus 81 Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~Hkg~~addCI~~~v~~ 149 (150)
|+||+++||+||+++|+|+||+|||+|||+||++|++||++|+||||+|++|.|+||||||||+++|+|
T Consensus 80 KiDi~~gmmdcl~Ak~~pcitDCVmaELEkLg~kyrvALri~kDpr~eRL~C~HKGTYADDClv~RV~q 148 (195)
T KOG3165|consen 80 KIDLFEGMMDCLYAKCIPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 148 (195)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhcchhhhhhhhhcCCcccccccccCCcchhhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987
No 2
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=99.97 E-value=6.4e-31 Score=215.19 Aligned_cols=95 Identities=36% Similarity=0.576 Sum_probs=91.6
Q ss_pred HHHHHHhhCCCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEee
Q 031926 52 ALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLP 131 (150)
Q Consensus 52 ~~fy~~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~k 131 (150)
..||++|||||+|||||||++|++++++.+|+|.++|.++|+|.+++|||+|||.|||++|+.+.+|+.||+ +|++++
T Consensus 13 l~ff~~~fgfRePYQVLvD~tF~~a~~~~~i~l~~~i~r~l~~~vKL~tTqCvikele~~g~~l~ga~~iAK--~fe~~~ 90 (236)
T KOG3164|consen 13 LKFFSVNFGFREPYQVLVDGTFCQAALQQKIGLDEQIKRYLQGEVKLMTTQCVIKELEELGKDLYGAKGIAK--QFEIRN 90 (236)
T ss_pred eeeeeeccCccCceEEEehhHHHHHHHHhhhChHHHHHHHhcCCCeeeehHHHHHHHHHhCcchhhhHHHHH--HHhHhc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cCCCCC-CHHHHHHHHhh
Q 031926 132 CTHKGT-YADDCLVERVT 148 (150)
Q Consensus 132 C~Hkg~-~addCI~~~v~ 148 (150)
|+|+.. +|+|||.++|.
T Consensus 91 C~H~~~~s~seCl~svv~ 108 (236)
T KOG3164|consen 91 CNHKDARSPSECLRSVVR 108 (236)
T ss_pred CCCCCCCCHHHHHHHHHh
Confidence 999754 99999999885
No 3
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=99.94 E-value=1.2e-27 Score=183.72 Aligned_cols=94 Identities=47% Similarity=0.723 Sum_probs=87.1
Q ss_pred HHHhhCCCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHH--hhcCCCceEeec
Q 031926 55 FTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR--IAKDPRFERLPC 132 (150)
Q Consensus 55 y~~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~--iaKd~r~e~~kC 132 (150)
|++|++|++||+||||||||+.+.++++||+++|+++++++++|+||+||++||++|+..++++.+ +|.. .+++++|
T Consensus 1 ~~~~~~~~~~~~VlvDTNfl~~~~q~~vdi~~~l~r~l~~~~~~~Ip~~Vi~EL~~l~~~~~~~~r~~ia~~-~~er~~~ 79 (136)
T COG1412 1 FQDNFGFRKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLKRKHRGKARIAIALK-YAERLEC 79 (136)
T ss_pred CccccccCCceEEEecchHHHHHHHccCCHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchHHHHHHHH-HhhccCc
Confidence 578999999999999999999999999999999999999999999999999999999998887777 5542 6899999
Q ss_pred CCCCCCHHHHHHHHhhh
Q 031926 133 THKGTYADDCLVERVTQ 149 (150)
Q Consensus 133 ~Hkg~~addCI~~~v~~ 149 (150)
.|.+.||||||.+.+.+
T Consensus 80 ~~~~~~aDe~i~~~a~~ 96 (136)
T COG1412 80 IHKGRYADECLLEAALK 96 (136)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999999999999865
No 4
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=99.51 E-value=8.6e-15 Score=105.67 Aligned_cols=61 Identities=46% Similarity=0.767 Sum_probs=55.1
Q ss_pred HhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecCCCCC--CHHHHHHHHhhh
Q 031926 89 MDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGT--YADDCLVERVTQ 149 (150)
Q Consensus 89 ~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~Hkg~--~addCI~~~v~~ 149 (150)
+++|+++++|+||+||++||+.||+.++++..+|+..++++++|+|.+. +|||||++++.+
T Consensus 1 ~~~L~~~~~~~vt~cVl~EL~~L~~~~~~~~~~a~~~~~~~~~c~h~~~~~~addci~~~~~~ 63 (101)
T PF04900_consen 1 KKLLGGKVKPYVTQCVLEELESLGKKFKGALRIAKRKALERRKCNHKETPGSADDCILDLAGK 63 (101)
T ss_pred CccccCccEEEecHHHHHHHHHhcccccchhhhhhchhhHhhcCCCCCCCcCHHHHHHHHhcc
Confidence 3689999999999999999999999999999999943499999999964 999999999853
No 5
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=96.85 E-value=0.0082 Score=41.99 Aligned_cols=41 Identities=29% Similarity=0.281 Sum_probs=32.6
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG 112 (150)
+++|||++...+.. ++.. .....+..++||.+|+.||+.+.
T Consensus 1 ~vlDTnvli~~~~~--~~~~---~~~~~~~~~~i~~~v~~El~~~~ 41 (111)
T smart00670 1 VVLDTNVLIDGLIG--KALE---KLLEKKGEVYIPPTVLEELEYLA 41 (111)
T ss_pred CEeeHHHHHHHHHH--HHHH---HHHcCCCcEEECHHHHHHHHHHH
Confidence 58999999999876 3333 33334788999999999999976
No 6
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=95.53 E-value=0.049 Score=39.76 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=28.4
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG 112 (150)
+++|||.+..... +...+ ....++|+.+|+.||+.+.
T Consensus 1 ~V~DTnvll~~~~----~l~~~-----~~~~ivIP~~Vl~ELd~lk 37 (133)
T PF13638_consen 1 YVLDTNVLLHHPD----LLEKL-----EQNKIVIPLTVLEELDRLK 37 (133)
T ss_dssp EEE-HHHHHHHHH----HHHHH-----SSSEEEEEHHHHHHHHHHH
T ss_pred CEeehhHHhCChH----HHhcc-----ccCEEEechHHHHHHHHHh
Confidence 5899999997753 22333 7888999999999998874
No 7
>PF13470 PIN_3: PIN domain
Probab=92.65 E-value=0.27 Score=35.03 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred EEEechHHHHHHHHcCCChhhHHHhh-hccccceeecHHHHHHHHHh
Q 031926 66 RVLVDTNFINFSIQNKLDLEKGMMDC-LYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~~L~~~-L~~k~kp~iT~CVi~ELekL 111 (150)
+|++|||-+..++-+.=.....+... ..+.+.++++.-++.|++..
T Consensus 1 RVvlDTNVli~~ll~~~~~~~~l~~~~~~~~~~~~~s~~~l~E~~~v 47 (119)
T PF13470_consen 1 RVVLDTNVLISALLSREPAARKLLDLAEDGRIELYISPEILDELERV 47 (119)
T ss_pred CEEEEechhHHHHhCCCchHHHHHHHHHcCCCeEEecHHHHHHHHHH
Confidence 58999999999987655444444444 46899999999999999965
No 8
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=91.49 E-value=0.53 Score=33.85 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.9
Q ss_pred EEEechHHHHHHHHcCCChhhHHHh-hhccccceeecHHHHHHH-HHh
Q 031926 66 RVLVDTNFINFSIQNKLDLEKGMMD-CLYAKCTPCITDCVMAEL-EKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~~L~~-~L~~k~kp~iT~CVi~EL-ekL 111 (150)
+|++|||.+..++-+.-. ...+.. +..+.+.++++.-++.|+ +.|
T Consensus 1 rvvlDTNVli~all~~~~-~~~l~~~~~~~~~~~~~s~~~l~E~~~~l 47 (114)
T TIGR00305 1 KVVIDTNVWISALIWKGL-PGKLIKLIIDNKIVNCTSVEILQEVEFVL 47 (114)
T ss_pred CEEEEhHHHHHHHhCCCC-HHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence 489999999999887655 333443 356889999999999999 444
No 9
>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids. The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....
Probab=87.07 E-value=1.4 Score=30.44 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=34.3
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK 114 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~ 114 (150)
|+||||++...+ ..=+-.+...+.+.....++++.=++.|+...-..
T Consensus 1 i~lDTsili~~~-~~~~~~~~~~~~~~~~~~~~is~~~~~E~~~~~~~ 47 (121)
T PF01850_consen 1 ILLDTSILIALL-RDEENHEKARELLERAIEIVISSLVLAELLYVLRR 47 (121)
T ss_dssp EEE-HHHHHHHH-SHSCHHHHHHHHHHTHSEEEEEHHHHHHHHHHHHH
T ss_pred EEEcChhhcccc-CCChhHHHHHHHHhcCCCEEEcHHHHHHHHHHhhh
Confidence 799999999999 33344455556665558899999999999876443
No 10
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=86.13 E-value=0.67 Score=33.39 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=28.8
Q ss_pred EEechHHHHHHHHcCCChh----hHHHhhhccccceeecHHHHHHHHH
Q 031926 67 VLVDTNFINFSIQNKLDLE----KGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~----~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
++||||.+.+.+...=... +.+.+. .....++++.-++.|+..
T Consensus 2 i~lDTnvli~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~vl~E~~~ 48 (142)
T TIGR00028 2 LLLDVNVLLAAVNRDHPHHDAARAWLDRF-AAGGDWATCPLTLAGFVR 48 (142)
T ss_pred ccchhhHHHHhcCCCCcchHHHHHHHHHH-hcCCCceechhhhhhhee
Confidence 6899999998887432222 223332 244567788899999865
No 11
>COG2402 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=85.38 E-value=1.1 Score=34.46 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=32.3
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccc-----cceeecHHHHHHHHHhhH
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAK-----CTPCITDCVMAELEKLGQ 113 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k-----~kp~iT~CVi~ELekLG~ 113 (150)
|||||||+.+-...+-.=-+.-..++... -.+++++|++.|...|-+
T Consensus 2 v~vDT~~~~a~~~~~d~~H~~a~~~~~~~~~~~~~~~~~~~~v~~e~~~l~k 53 (135)
T COG2402 2 VLVDTSVLLALFDKRDKNHEAAVQLFVSLADNKFRRLVVSDHVLDETLTLLK 53 (135)
T ss_pred EEEechHHHHHHhchhhhHHHHHHHHhhcccCccceEEEeeeeHHHHHHHHH
Confidence 89999999887765543322222333332 268999999999998854
No 12
>COG1848 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=73.49 E-value=7.2 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=35.7
Q ss_pred EEEechHHHHHHHHcCC----ChhhHHHhhhccccceeecHHHHHHHHHhh
Q 031926 66 RVLVDTNFINFSIQNKL----DLEKGMMDCLYAKCTPCITDCVMAELEKLG 112 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kl----dl~~~L~~~L~~k~kp~iT~CVi~ELekLG 112 (150)
.+++|||++...+-..- ...+-+.+...+....+++.=|+.|+-.+-
T Consensus 1 ~i~~Dtnvlv~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~e~~~v~ 51 (140)
T COG1848 1 MIVIDTNVLVYALFRDHPHHDRARELLERLEAGDIRVYTPELVLAELLRVL 51 (140)
T ss_pred CeeeehHHHHHHHHccChhHHHHHHHHHHHhcCCCceeecHHHHHHHHHHH
Confidence 37899999999988653 234556666667778899999999987763
No 13
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=71.43 E-value=9.7 Score=29.86 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=38.3
Q ss_pred EEEechHHHHHHHHcCCChhhHHHhhhc-cccceeecHHHHHHHHH
Q 031926 66 RVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEK 110 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~~L~~~L~-~k~kp~iT~CVi~ELek 110 (150)
+|++|||-+..++=.+=.+...+.+.+. .+...+++.-.+.||+.
T Consensus 2 kVViDTNV~isaLi~p~Gl~~~l~~ll~~~~i~n~tS~eil~El~~ 47 (142)
T COG1569 2 KVVIDTNVWISALISPGGLPGELISLLIKEKIENYTSEEILDELEE 47 (142)
T ss_pred eEEEEhhHHHHHHhCCCCCcHHHHHHHhhCceEEEecHHHHHHHHH
Confidence 7999999999999888877777777775 56789999999999954
No 14
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=65.97 E-value=7.6 Score=30.09 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=35.3
Q ss_pred EechHHHHHHHHc--CCChhhHHHhhhcc---ccceeecHHHHHHHHHhhHhh
Q 031926 68 LVDTNFINFSIQN--KLDLEKGMMDCLYA---KCTPCITDCVMAELEKLGQKY 115 (150)
Q Consensus 68 LvDtNFi~~~~q~--Kldl~~~L~~~L~~---k~kp~iT~CVi~ELekLG~~~ 115 (150)
|+|||.+..+.+. .+|+..++=+-|.. .-.+++++-|.+||+.=+..+
T Consensus 2 llDtN~~I~a~~~yY~~d~~p~fW~~L~~~~~~g~i~~~~~V~~El~~~~d~l 54 (162)
T PF14367_consen 2 LLDTNVFIQAWNRYYPFDIFPSFWDWLEQLIESGRIISPDEVYDELERGDDEL 54 (162)
T ss_pred ccchHHHHHHHHhcCCchHHHHHHHHHHHHHhCCeEeehHHHHHHHhhCChhH
Confidence 6999999877664 66777665554443 557899999999999755443
No 15
>PRK13725 plasmid maintenance protein; Provisional
Probab=60.04 E-value=13 Score=27.62 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=29.1
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHH
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
.|+|||.+...++.+-+...+..+ + ..-.++|+.=++.||..
T Consensus 4 yLLDTni~i~~~~~~~~~v~~~~~-~-~~~~~~iS~It~~EL~~ 45 (132)
T PRK13725 4 FMLDTNICIFTIKNKPEHVRERFN-L-NTGRMCISSVTLMELIY 45 (132)
T ss_pred hhhhHHHHHHHHhCCcHHHHHHHh-C-CCcceeehHHHHHHHHH
Confidence 599999999999865433222222 1 23458899999999975
No 16
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=53.81 E-value=35 Score=22.51 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCChhhHHHhhh--ccccceeecHHHHHHHHHhhHhhHHH
Q 031926 72 NFINFSIQNKLDLEKGMMDCL--YAKCTPCITDCVMAELEKLGQKYRVA 118 (150)
Q Consensus 72 NFi~~~~q~Kldl~~~L~~~L--~~k~kp~iT~CVi~ELekLG~~~~~A 118 (150)
|-|-.|++.-++-.+-+ +.| .+++.|.+|.=|..+|++=.+.+=.|
T Consensus 3 ~lIErCl~~yMsk~E~v-~~L~~~a~I~P~~T~~VW~~Le~eN~eFF~a 50 (54)
T PF09713_consen 3 NLIERCLQLYMSKEECV-RALQKQANIEPVFTSTVWQKLEKENPEFFKA 50 (54)
T ss_pred hHHHHHHHHcCCHHHHH-HHHHHHcCCChHHHHHHHHHHHHHCHHHHHH
Confidence 44667888888875544 456 57899999999999999988776444
No 17
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=40.33 E-value=17 Score=32.35 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=14.6
Q ss_pred CCCCCeEEEechHHHH
Q 031926 60 ALGPPYRVLVDTNFIN 75 (150)
Q Consensus 60 ~frpPYqVLvDtNFi~ 75 (150)
.|.+|+-||+|+.|+.
T Consensus 155 aF~qP~aVi~D~~~L~ 170 (360)
T COG0337 155 AFYQPKAVLIDTDFLK 170 (360)
T ss_pred cccCCcEEEEchHHhc
Confidence 5889999999999985
No 18
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.18 E-value=36 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred eeecHHHHHHHHHhhHhhHHHHHhhcC
Q 031926 98 PCITDCVMAELEKLGQKYRVALRIAKD 124 (150)
Q Consensus 98 p~iT~CVi~ELekLG~~~~~Al~iaKd 124 (150)
.+=--|.++|+++|..++++|-.+-..
T Consensus 30 FfdDlcTinEiqslaqRlqVa~mL~eg 56 (100)
T COG4496 30 FFDDLCTINEIQSLAQRLQVAKMLKEG 56 (100)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 445569999999999999988766543
No 19
>PRK13764 ATPase; Provisional
Probab=34.08 E-value=44 Score=31.70 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=16.3
Q ss_pred ccceeecHHHHHHHHHhhH
Q 031926 95 KCTPCITDCVMAELEKLGQ 113 (150)
Q Consensus 95 k~kp~iT~CVi~ELekLG~ 113 (150)
.-.++|+.-|++||+.+..
T Consensus 26 ~~~IiIP~~Vl~ELe~~A~ 44 (602)
T PRK13764 26 GGTIIIPEAVVAELEAQAN 44 (602)
T ss_pred CCEEEeehHHHHHHHHHhh
Confidence 4569999999999999854
No 20
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=33.95 E-value=20 Score=26.96 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=21.3
Q ss_pred chHHHHH---HhhCCCCCeEEEechHHHHHHHHcCCChhhHHHh
Q 031926 50 SSALFFT---HNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMD 90 (150)
Q Consensus 50 ~s~~fy~---~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~ 90 (150)
-|+.||. |+||++.|. ++|+.-.. +.++++.+.|.+
T Consensus 71 lsn~fYtlIPh~fg~~~~~--~I~~~~~l---~~k~~lle~L~d 109 (133)
T PF02877_consen 71 LSNRFYTLIPHNFGRSRPP--VIDTEEKL---KEKLELLEALLD 109 (133)
T ss_dssp HHHHHHHHSTB-STTS-S----STSHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcccCCCCC--CcCCHHHH---HHHHHHHHHHHH
Confidence 6889998 588998888 77775433 334556665554
No 21
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=32.67 E-value=1.3e+02 Score=20.07 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCChhhHHHhhh-ccccceeecHHHHHHHHHhhHhhHHHH
Q 031926 72 NFINFSIQNKLDLEKGMMDCL-YAKCTPCITDCVMAELEKLGQKYRVAL 119 (150)
Q Consensus 72 NFi~~~~q~Kldl~~~L~~~L-~~k~kp~iT~CVi~ELekLG~~~~~Al 119 (150)
|-|-.|++.-++..+-+.-+. .+.+.|.+|.=|..+|++=.+.+=.|.
T Consensus 6 ~lIE~Cl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~LekeN~eFF~aY 54 (57)
T TIGR01589 6 NRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCY 54 (57)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 456678888888765554433 378999999999999999877665443
No 22
>COG1487 VapC Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.76 E-value=1.2e+02 Score=21.92 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=27.8
Q ss_pred eEEEechHHHHHHHHcCCChh--hHHHhhhccccceeecHHHHHHHHH
Q 031926 65 YRVLVDTNFINFSIQNKLDLE--KGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 65 YqVLvDtNFi~~~~q~Kldl~--~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
...++|||.+.......-.-. ..+.+ ...+++.=++.||..
T Consensus 2 ~~~llDTnv~i~l~~~~~~~~~~~~~~~-----~~~~~s~it~~El~~ 44 (133)
T COG1487 2 MMYLLDTSVIIALLRGEPKELLELRLAE-----FEIYLSSITVAELLL 44 (133)
T ss_pred CceeeeHHHHHHHHhcCChHHHHHHHhc-----CCeeecHHHHHHHHH
Confidence 357999999999887544422 22221 557788888888865
No 23
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.71 E-value=46 Score=26.07 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=31.9
Q ss_pred EEEechHHHHHHHHcCCC-----hhhHHHhhhccccceeecHHHHHHHHH
Q 031926 66 RVLVDTNFINFSIQNKLD-----LEKGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kld-----l~~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
...+|||.+.+++.++-+ +.+.|.+.++-. .+|+.-|+.|+-.
T Consensus 5 ~~flDsNI~iYa~~~~~~~~kr~~a~~L~~a~~~~--~VVs~QVl~Et~~ 52 (142)
T COG5573 5 PAFLDSNILIYALDNNAGEKKRDAAEVLEQALGHT--YVVSVQVLNETCY 52 (142)
T ss_pred hhhhccchhhhhhcccchhhHHHHHHHHHHhcCce--EEEehHHHHHHHH
Confidence 457899999998877664 445666655543 7899999999754
No 24
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=25.81 E-value=37 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.1
Q ss_pred CCCCCeEEEechHHHHH
Q 031926 60 ALGPPYRVLVDTNFINF 76 (150)
Q Consensus 60 ~frpPYqVLvDtNFi~~ 76 (150)
.|.+|+.|++|++||..
T Consensus 330 ~f~~P~~V~iD~~~l~t 346 (542)
T PRK14021 330 SFYTPAGVLADTKTLAT 346 (542)
T ss_pred eecCCCEEEEeHHHHhh
Confidence 47799999999999975
No 25
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=22.64 E-value=50 Score=29.04 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=28.2
Q ss_pred chHHHHH---HhhCCCCCeEEEechHHHHHHHHcCCChhhHHHhhh
Q 031926 50 SSALFFT---HNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCL 92 (150)
Q Consensus 50 ~s~~fy~---~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L 92 (150)
-|+.||+ |+||.+.|. ++|+ ...++.|+++.+.|.+.-
T Consensus 72 ls~~FYtlIPh~fg~~~p~--~i~~---~~~l~~k~~lle~L~die 112 (347)
T cd01437 72 LSNEFYTLIPHDFGMSKPP--VIDN---EELLKAKRELLEALRDIE 112 (347)
T ss_pred HHHHHHHhCCccccCCCCC--ccCC---HHHHHHHHHHHHHHHHHH
Confidence 4788998 789999884 7787 445666777777777753
No 26
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=20.88 E-value=39 Score=28.45 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=11.6
Q ss_pred CCCCCeEEEechHHHH
Q 031926 60 ALGPPYRVLVDTNFIN 75 (150)
Q Consensus 60 ~frpPYqVLvDtNFi~ 75 (150)
.|.+|..|++|+.|+.
T Consensus 90 ~f~~P~~V~iD~~~l~ 105 (260)
T PF01761_consen 90 TFYQPEAVLIDPSFLK 105 (260)
T ss_dssp EE---SEEEEEGGGGG
T ss_pred ccCCCceeEEcHHHHh
Confidence 5789999999999984
No 27
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=20.03 E-value=35 Score=26.61 Aligned_cols=33 Identities=30% Similarity=0.612 Sum_probs=0.0
Q ss_pred cceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecCCC
Q 031926 96 CTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHK 135 (150)
Q Consensus 96 ~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~Hk 135 (150)
...|+-+||..+-|.||.+.|.-+-. .--|.|+
T Consensus 108 leaYfKDcvfk~WEElGee~RL~iFV-------LGGCRHK 140 (142)
T PF00739_consen 108 LEAYFKDCVFKDWEELGEEIRLMIFV-------LGGCRHK 140 (142)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcccceEEEEE-------ecCcccc
Confidence 46899999999999999987655433 3358886
Done!