Query 031926
Match_columns 150
No_of_seqs 210 out of 426
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4w_A PIN (PILT N-terminus) d 99.6 2.6E-15 9E-20 112.5 9.7 88 55-149 13-109 (147)
2 2dok_A Telomerase-binding prot 96.4 0.0048 1.7E-07 47.4 5.6 41 64-111 12-53 (186)
3 3ix7_A Uncharacterized protein 96.2 0.021 7.1E-07 42.8 7.8 73 67-149 8-96 (134)
4 2hwy_A Protein SMG5; RNA degra 90.2 0.42 1.4E-05 36.9 5.0 50 67-122 5-57 (164)
5 3i8o_A KH domain-containing pr 88.5 0.74 2.5E-05 34.7 5.2 53 66-123 5-61 (142)
6 1v96_A Hypothetical protein PH 87.2 0.52 1.8E-05 33.4 3.5 45 64-111 4-48 (149)
7 3zvk_A VAPC2, toxin of toxin-a 86.7 1.1 3.6E-05 31.2 4.9 45 66-111 2-47 (134)
8 3tnd_A TRNA(FMet)-specific end 83.2 1.5 5.3E-05 30.3 4.4 43 66-111 3-46 (132)
9 1w8i_A Putative VAPC ribonucle 82.5 1.9 6.5E-05 31.1 4.8 46 66-111 2-52 (156)
10 3h87_A Putative uncharacterize 72.4 2.8 9.5E-05 31.2 3.2 47 61-110 15-61 (156)
11 2h1c_A Trafficking protein B; 71.0 2.6 8.8E-05 28.8 2.5 43 67-111 2-46 (139)
12 3dbo_B Uncharacterized protein 65.5 3.3 0.00011 30.4 2.2 44 61-110 17-60 (150)
13 2lcq_A Putative toxin VAPC6; P 56.3 2.2 7.5E-05 31.7 -0.2 30 66-111 12-41 (165)
14 2fe1_A Conserved hypothetical 54.2 8.6 0.00029 27.7 2.8 45 65-110 26-70 (156)
15 2xpn_B SPT6, chromatin structu 38.9 3.2 0.00011 22.7 -1.2 21 51-72 2-22 (26)
16 1v8p_A Hypothetical protein PA 28.5 69 0.0024 23.3 4.3 38 67-111 30-67 (158)
17 3c4h_A Poly(ADP-ribose) polyme 21.3 30 0.001 29.0 1.1 37 50-91 78-117 (357)
No 1
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=99.61 E-value=2.6e-15 Score=112.50 Aligned_cols=88 Identities=27% Similarity=0.335 Sum_probs=68.5
Q ss_pred HHHhhCCCCCeE-EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH--------hhHHHHHhhcCC
Q 031926 55 FTHNTALGPPYR-VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--------KYRVALRIAKDP 125 (150)
Q Consensus 55 y~~n~~frpPYq-VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~--------~~~~Al~iaKd~ 125 (150)
...|||||+||+ +++|||++..+++++.++.+.+.+++. ..++||.||+.||+.+.. ..+.++.++.
T Consensus 13 ~~~~~~~~~pmk~vvLDTNvli~~~~~~~~~~~~l~~~l~--~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~-- 88 (147)
T 1o4w_A 13 MEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGF--SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLE-- 88 (147)
T ss_dssp ---------CCEEEEECHHHHHHHHHHTCCHHHHHHHTTE--EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT--
T ss_pred hhhhhccCCCCCEEEEEhhHHHHHHHcCchHHHHHHHhcc--CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHh--
Confidence 467999999999 999999999999999999999999876 889999999999999863 4556777887
Q ss_pred CceEeecCCCCCCHHHHHHHHhhh
Q 031926 126 RFERLPCTHKGTYADDCLVERVTQ 149 (150)
Q Consensus 126 r~e~~kC~Hkg~~addCI~~~v~~ 149 (150)
+++.+.|+ .| + |+||++.+.+
T Consensus 89 ~~~vv~~~-~~-~-D~~Ila~A~~ 109 (147)
T 1o4w_A 89 HFEVVETE-SE-G-DPSLIEAAEK 109 (147)
T ss_dssp TSEEECCS-SC-S-HHHHHHHHHH
T ss_pred cCcEeeCC-CC-c-hHHHHHHHHH
Confidence 68889998 45 7 9999998753
No 2
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=96.42 E-value=0.0048 Score=47.44 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=30.9
Q ss_pred CeEEEechHHHHHHHHcCCChhhHHHhhhc-cccceeecHHHHHHHHHh
Q 031926 64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEKL 111 (150)
Q Consensus 64 PYqVLvDtNFi~~~~q~Kldl~~~L~~~L~-~k~kp~iT~CVi~ELekL 111 (150)
|..+++|||+|+.... .|.+... +...++|+..|+.||+.|
T Consensus 12 ~~~~VlDTNvLl~~~~-------~l~~~~~~~~~~viIP~~VleELd~l 53 (186)
T 2dok_A 12 PLFLVPDTNGFIDHLA-------SLARLLESRKYILVVPLIVINELDGL 53 (186)
T ss_dssp EEEEEECHHHHHHHHH-------HHHHHHHHTSSEEEEEHHHHHHHHHH
T ss_pred CCEEEEEhHHHHcCHH-------HHHHHHcCCCeEEEECHHHHHHHHHh
Confidence 4468999999977643 3444332 457899999999999998
No 3
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=96.19 E-value=0.021 Score=42.75 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccc---cceeecHHHHHHHHHhh--------HhhHHHHHhhcC----CCceEee
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAK---CTPCITDCVMAELEKLG--------QKYRVALRIAKD----PRFERLP 131 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k---~kp~iT~CVi~ELekLG--------~~~~~Al~iaKd----~r~e~~k 131 (150)
.++|||+|... .+.+.+... -.++|+.+|+.||+.+. .+-+.+|++.+. ..++...
T Consensus 8 ~vlDTSviIdG---------ri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~ 78 (134)
T 3ix7_A 8 KVLDTSVLVDG---------RVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE 78 (134)
T ss_dssp EEECHHHHHHC---------HHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC
T ss_pred eEcccceEEec---------HHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC
Confidence 47799999843 233333222 26999999999999996 235567766651 1134443
Q ss_pred cCCC-CCCHHHHHHHHhhh
Q 031926 132 CTHK-GTYADDCLVERVTQ 149 (150)
Q Consensus 132 C~Hk-g~~addCI~~~v~~ 149 (150)
.-. +..+|+-|++++.+
T Consensus 79 -~~~~~~~vD~~ll~lA~~ 96 (134)
T 3ix7_A 79 -TTPKGESVDEKLLFLARD 96 (134)
T ss_dssp -CCCSCSSHHHHHHHHHHH
T ss_pred -CCCCcccHHHHHHHHHHH
Confidence 222 24799999998864
No 4
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=90.17 E-value=0.42 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=36.6
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH---hhHHHHHhh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRIA 122 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~---~~~~Al~ia 122 (150)
.++|||++...+. +.+.|.. ..+..++|+.=|+.||..|.. ..|.|++..
T Consensus 5 lVlDTN~Li~~l~----~i~~l~~--~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~L 57 (164)
T 2hwy_A 5 LVPDTQALCHHLP----VIRQLAT--SGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYL 57 (164)
T ss_dssp EEECHHHHHHCHH----HHHHHHH--HSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred EEechHHHHhCHH----HHHHHHh--CCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5689999988553 5555533 257889999999999999954 466666654
No 5
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=88.51 E-value=0.74 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=35.1
Q ss_pred EEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH----hhHHHHHhhc
Q 031926 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ----KYRVALRIAK 123 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~----~~~~Al~iaK 123 (150)
.+++|||-|.... |.+.+..-+.....++|+..|+.||+.+.. .-+.+|.+.+
T Consensus 5 ~~vlDTSviIdGr-----I~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~ 61 (142)
T 3i8o_A 5 KVCVDTCVVIDGR-----ITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELR 61 (142)
T ss_dssp EEEECHHHHHTTH-----HHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEeecceEEEcH-----HHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 5899999998433 333333333333469999999999999964 3345666655
No 6
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=87.18 E-value=0.52 Score=33.45 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=32.0
Q ss_pred CeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHh
Q 031926 64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 64 PYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekL 111 (150)
+-.+++|||.+...+. +-...+.+.+.....++++.-++.|+...
T Consensus 4 ~~~~llDTnvli~~l~---~~~~~~~~~~~~~~~~~is~i~~~El~~~ 48 (149)
T 1v96_A 4 PPDITFDSLALIKMHS---QNMKRILEVTLAKFTVNLSIVTVYRYLTA 48 (149)
T ss_dssp CSEEEECHHHHHHHTS---GGGHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_pred CCEEEeehHHHHHHHc---cchHHHHHHHhcCCCEEeeHhhHHHHHHH
Confidence 3469999999999886 22234444443335688999999999863
No 7
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=86.74 E-value=1.1 Score=31.23 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=32.8
Q ss_pred EEEechHHHHHHHHcCCC-hhhHHHhhhccccceeecHHHHHHHHHh
Q 031926 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kld-l~~~L~~~L~~k~kp~iT~CVi~ELekL 111 (150)
.+|+|||.+...+...-+ +.+.+..... .-.++|+.-++.|+...
T Consensus 2 ~~llDTnvli~~~~~~~~~~~~~l~~~~~-~~~~~is~i~~~El~~~ 47 (134)
T 3zvk_A 2 IYMLGTNICVYAINKHPDSYYNNLELLAK-NNTIAISSIVLAELQYG 47 (134)
T ss_dssp EEEECHHHHHHHHHHCCHHHHHHHHHHHT-TSEEEEEHHHHHHHHHH
T ss_pred eEEeeHHHHHHHHcCCcHHHHHHHHhcCc-CCcEEeeheeHHHHHHH
Confidence 589999999999986643 3344444322 14789999999999864
No 8
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=83.25 E-value=1.5 Score=30.26 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=32.3
Q ss_pred EEEechHHHHHHHHcCCC-hhhHHHhhhccccceeecHHHHHHHHHh
Q 031926 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kld-l~~~L~~~L~~k~kp~iT~CVi~ELekL 111 (150)
.+|+|||.+...+...-+ +.+.+.... -.++++.-++.|+...
T Consensus 3 ~~llDTnvli~~~~~~~~~~~~~l~~~~---~~~~iS~i~~~El~~~ 46 (132)
T 3tnd_A 3 KFMLDTNICIFTIKNKPASVRERFNLNQ---GKMCISSVTLMELIYG 46 (132)
T ss_dssp CEEECHHHHHHHHHHCCHHHHHHHHHHT---TSEEEEHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHcCCcHHHHHHHHhcC---CCEEeeHHHHHHHHHH
Confidence 589999999999986643 344454432 4689999999999864
No 9
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=82.53 E-value=1.9 Score=31.05 Aligned_cols=46 Identities=15% Similarity=-0.047 Sum_probs=32.9
Q ss_pred EEEechHHHHHHHHcCCChhh----HHH-hhhccccceeecHHHHHHHHHh
Q 031926 66 RVLVDTNFINFSIQNKLDLEK----GMM-DCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~----~L~-~~L~~k~kp~iT~CVi~ELekL 111 (150)
.++||||++...+...=+..+ -+. ....+...++|+.-|+.|+...
T Consensus 2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~ 52 (156)
T 1w8i_A 2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTL 52 (156)
T ss_dssp EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHH
Confidence 489999999999875333222 233 4444467789999999999875
No 10
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=72.37 E-value=2.8 Score=31.18 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=34.1
Q ss_pred CCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHH
Q 031926 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 61 frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
...+..+|||||.+...++.. ....+.+.+.. -.++|+.-++.||..
T Consensus 15 ~~~~~~~LLDTnvli~~l~~~--~~~~l~~~~~~-~~l~iS~it~~El~~ 61 (156)
T 3h87_A 15 MVTDQRWLIDKSALVRLTDSP--DMEIWSNRIER-GLVHITGVTRLEVGF 61 (156)
T ss_dssp --CCCCEEECHHHHTTGGGCT--THHHHHHHHHT-TCEEEEHHHHHHHHH
T ss_pred hhcCCCEEEEHHHHHHHHcCH--HHHHHHHhccC-CCEEEccccHHHHhh
Confidence 456678999999999988643 34556665532 247899999999986
No 11
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=71.04 E-value=2.6 Score=28.81 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhc--cccceeecHHHHHHHHHh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLY--AKCTPCITDCVMAELEKL 111 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~--~k~kp~iT~CVi~ELekL 111 (150)
+++|||.+...+...-+ ....+.|. ..-.++++.-++.|+...
T Consensus 2 ~llDTnvli~~~~~~~~--~~~~~~l~~~~~~~~~is~~~~~El~~~ 46 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPN--ERVVAWLDSLILEDVYLSAITVAELRLG 46 (139)
T ss_dssp EEECHHHHTGGGSSSCC--HHHHHHHHHSCGGGEEEEHHHHHHHHHH
T ss_pred EeeehHHHHHHHcCCCC--HHHHHHHHhCCcccEEeeHHHHHHHHHH
Confidence 68999999998875421 22223332 235689999999999864
No 12
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=65.47 E-value=3.3 Score=30.38 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHH
Q 031926 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 61 frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
..+|=.+|||||.+...++..-.. . .+ ..-.++|+.-++.||..
T Consensus 17 ~~~~~~~LlDTnvlI~~l~g~~~~-~----~~-~~~~l~iS~It~~El~~ 60 (150)
T 3dbo_B 17 STTPAAGVLDTSVFIATESGRQLD-E----AL-IPDRVATTVVTLAELRV 60 (150)
T ss_dssp ---CCEEEECSGGGBC-----CCC-G----GG-SCSEEEEEHHHHHHHHH
T ss_pred ccccCEEEEeHHHHHHHHcCCcch-h----hc-CCCcEEEchhHHHHHHH
Confidence 356778999999999888754322 1 22 34568999999999875
No 13
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=56.28 E-value=2.2 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=23.9
Q ss_pred EEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHh
Q 031926 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 66 qVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekL 111 (150)
.+++|||.|.... ++ .++||..|+.||...
T Consensus 12 ~~VlDTs~lI~~~----~~------------~l~~p~~V~~El~~~ 41 (165)
T 2lcq_A 12 TLVLDSSVFIQGI----DI------------EGYTTPSVVEEIKDR 41 (165)
T ss_dssp SCEECHHHHHHTC----CC------------CEEECHHHHTTCCSS
T ss_pred EEEEcChHHHcCC----CC------------CEEEChhhHHhhcCH
Confidence 4789999999844 11 789999999999753
No 14
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=54.20 E-value=8.6 Score=27.66 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=32.9
Q ss_pred eEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHH
Q 031926 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110 (150)
Q Consensus 65 YqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELek 110 (150)
..|+||||.+...+... +..+...+.|.....++++.-++.|+..
T Consensus 26 M~ivlDTsvli~~l~~~-~~~~~a~~~l~~~~~~~is~~~~~Ev~~ 70 (156)
T 2fe1_A 26 MELVVDASAIAALYVPE-ERSEQAERAVSQAQELHTLDLAAYEVAN 70 (156)
T ss_dssp CEEEECHHHHHTTSSSC-CCCHHHHHHHHHCSEEEEEHHHHHHHHH
T ss_pred CeEEEEHHHHHHHHhCC-CCcHHHHHHHhhccCeehHHHHHHHHHH
Confidence 36999999999988642 2335555556544568999999999974
No 15
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=38.88 E-value=3.2 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=16.4
Q ss_pred hHHHHHHhhCCCCCeEEEechH
Q 031926 51 SALFFTHNTALGPPYRVLVDTN 72 (150)
Q Consensus 51 s~~fy~~n~~frpPYqVLvDtN 72 (150)
|++||.. ||.+.-|.-++..|
T Consensus 2 ~slFyEI-FGtG~EYrYile~~ 22 (26)
T 2xpn_B 2 SHMFFEI-FGTGEEYRYVLESD 22 (26)
T ss_pred CcEEEEE-ecCCceEEEEeecC
Confidence 5678877 99999998776543
No 16
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=28.53 E-value=69 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=27.8
Q ss_pred EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHh
Q 031926 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL 111 (150)
Q Consensus 67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekL 111 (150)
++||||.+...+-. .+ +.+.+...++++.-++.|+...
T Consensus 30 ivvDTSvlv~~l~~----~~---~~l~~~~~~~ip~l~~~Ev~~v 67 (158)
T 1v8p_A 30 YLVDASALYALAAH----YD---KWIKHREKLAILHLTIYEAGNA 67 (158)
T ss_dssp EEECHHHHHHHTTC----HH---HHGGGGGGEEECHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHh----hH---HHHhhcCCEEeHHHHHHHHHHH
Confidence 89999999999853 22 2233345688999999998763
No 17
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=21.30 E-value=30 Score=29.04 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=26.1
Q ss_pred chHHHHHH---hhCCCCCeEEEechHHHHHHHHcCCChhhHHHhh
Q 031926 50 SSALFFTH---NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDC 91 (150)
Q Consensus 50 ~s~~fy~~---n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~ 91 (150)
-|+.||+. +||++.|. ++|+.- .++.|+++.+.|.+.
T Consensus 78 ls~~fyt~IPh~fg~~~p~--~i~~~~---~l~~k~~lle~l~di 117 (357)
T 3c4h_A 78 LSSHFYTVIPHNFGHSQPP--PINSPE---LLQAKKDMLLVLADI 117 (357)
T ss_dssp HHHHHHHHSCBCSTTSCCC--CCCSHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCcccCCCCCC--ccCCHH---HHHHHHHHHHHHHHH
Confidence 58899996 78887776 677643 344466777777764
Done!