BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031927
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 244

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 108 SRPSFALGMLAVVAMSVPASTFMVILRLLEVANGVLSAINSSC 150
           ++P F + +  + AM       + +LRL ++ NGV   +N + 
Sbjct: 83  AKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKAT 125


>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor
 pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor
 pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor Nadh And Inositol
 pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor Nadh And Inositol
 pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor And Product
           Inosose
 pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
           Bacillus Subtilis With Bound Cofactor And Product
           Inosose
          Length = 344

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 30  RAGAIVSAAGRDSCHWNYRGQ--LVDENMIVLRKRIHEMKVMERNYEPPAEWMEWEKQYY 87
           + G +++A    +C + Y  Q  +V E+ I+       + + +         M+W++++ 
Sbjct: 218 KGGIVINAEIYVNCKYGYDIQCEIVGEDGIIKLPEPSSISLRKEGRFSTDILMDWQRRFV 277

Query: 88  ACYDEFICKLVGFLQTQLMNSRPSFALGMLAVVAMS 123
           A YD  I   +  +Q +   S P+   G +A V   
Sbjct: 278 AAYDVEIQDFIDSIQKKGEVSGPTAWDGYIAAVTTD 313


>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
           Dehydrogenase From Bacillus Subtilis
 pdb|3NTQ|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
           Dehydrogenase From Bacillus Subtilis With Bound Cofactor
           Nad
 pdb|3NTQ|B Chain B, Crystal Structure Of K97v Mutant Myo-Inositol
           Dehydrogenase From Bacillus Subtilis With Bound Cofactor
           Nad
 pdb|3NTR|A Chain A, Crystal Structure Of K97v Mutant Of Myo-Inositol
           Dehydrogenase From Bacillus Subtilis With Bound Cofactor
           Nad And Inositol
 pdb|3NTR|B Chain B, Crystal Structure Of K97v Mutant Of Myo-Inositol
           Dehydrogenase From Bacillus Subtilis With Bound Cofactor
           Nad And Inositol
          Length = 344

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 30  RAGAIVSAAGRDSCHWNYRGQ--LVDENMIVLRKRIHEMKVMERNYEPPAEWMEWEKQYY 87
           + G +++A    +C + Y  Q  +V E+ I+       + + +         M+W++++ 
Sbjct: 218 KGGIVINAEIYVNCKYGYDIQCEIVGEDGIIKLPEPSSISLRKEGRFSTDILMDWQRRFV 277

Query: 88  ACYDEFICKLVGFLQTQLMNSRPSFALGMLAVVAMS 123
           A YD  I   +  +Q +   S P+   G +A V   
Sbjct: 278 AAYDVEIQDFIDSIQKKGEVSGPTAWDGYIAAVTTD 313


>pdb|2RIL|A Chain A, Crystal Structure Of A Putative Monooxygenase
           (Yp_001095275.1) From Shewanella Loihica Pv-4 At 1.26 A
           Resolution
          Length = 99

 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 76  PAEWMEWEKQYYACYDEFICKLVGFLQTQLMNSRPSFALGMLAVVAM 122
           PA+ +E   +Y+  + +F  +  G+L TQL  S    A   L  VA+
Sbjct: 15  PADKLEAAIEYWEAHRDFXAQQPGYLSTQLHQSIDEGATYQLINVAI 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,839,054
Number of Sequences: 62578
Number of extensions: 138503
Number of successful extensions: 485
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 13
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)