BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031927
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4JUN3|ILVD_CORJK Dihydroxy-acid dehydratase OS=Corynebacterium jeikeium (strain
           K411) GN=ilvD PE=3 SV=1
          Length = 615

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 26  GSVRRAGAIVSAAGRDSCHWNYRGQ-LVDENM-----IVLRKRIHEMKVMERNYEPPA 77
           G++   GA++ AAG D   W++ G+ LV E+      ++L K++    V+   YE PA
Sbjct: 431 GNLAEDGAVIKAAGVDPSIWHFEGKALVVESQEEAVRVILDKKVKPGHVVVVRYEGPA 488


>sp|Q2J4D1|ILVD_FRASC Dihydroxy-acid dehydratase OS=Frankia sp. (strain CcI3) GN=ilvD
           PE=3 SV=1
          Length = 617

 Score = 31.2 bits (69), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 25  FGSVRRAGAIVSAAGRDSCHWNYRG-QLVDENM-----IVLRKRIHEMKVMERNYEPP 76
           FG++   GA+V  AG D   W +RG  LV E+       +L  R+    V+   YE P
Sbjct: 429 FGNLAVEGAVVKTAGVDEGQWTFRGPALVVESQEEAVDAILTGRVKAGNVIIVRYEGP 486


>sp|A1TZS9|SUCC_MARAV Succinyl-CoA ligase [ADP-forming] subunit beta OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=sucC
           PE=3 SV=1
          Length = 388

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 34  IVSAAGRDSCHWNYRGQLVDENMIVLRKRIHEMKVMERNYEPPAEWMEWEKQYYACYDEF 93
           +++ AG   C     G  VD N +  +K+IHEM    +     AE  +WE  Y A     
Sbjct: 202 VITPAGDLHCLDAKVG--VDGNALYRQKKIHEMHDPSQEDSREAEAAKWELNYVALEGNI 259

Query: 94  ICKLVGFLQTQLMNSRPSFALGMLAVVAMS 123
            C          M +    A+G + ++ +S
Sbjct: 260 GC----------MVNGAGLAMGTMDIIKLS 279


>sp|Q5EHP2|CM38_CONMR Conotoxin Mr3.8 OS=Conus marmoreus PE=2 SV=1
          Length = 70

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 22 KRNFGSVRRAGAIVSAAGRDSCHWNYRGQLV 52
          K+ F   +R G I+ A G+  CHWN+   L 
Sbjct: 35 KQLFNPHKRRGIILRAPGKRCCHWNWCDHLC 65


>sp|Q22560|IMA1_CAEEL Importin subunit alpha-1 OS=Caenorhabditis elegans GN=ima-1 PE=1
           SV=1
          Length = 524

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 77  AEWMEWEKQYYACYDEFIC-KLVGFLQTQLMNSRPSFALGMLAVVAMSVPASTFMVILRL 135
           A   EW   Y+   D  +C KLV  L+    N+RP    G+ +++  +   +  M+   L
Sbjct: 265 ASLAEWPPIYHYMSDLKLCSKLVANLRNDKGNARPKVKAGINSIIQATGYFTEEMIDAGL 324

Query: 136 LEVANGVLS 144
           LEV  G ++
Sbjct: 325 LEVLKGFVN 333


>sp|Q6NHN6|ILVD_CORDI Dihydroxy-acid dehydratase OS=Corynebacterium diphtheriae (strain
           ATCC 700971 / NCTC 13129 / Biotype gravis) GN=ilvD PE=3
           SV=1
          Length = 613

 Score = 29.6 bits (65), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 26  GSVRRAGAIVSAAGRDSCHWNYRG--QLVDEN----MIVLRKRIHEMKVMERNYEPPA 77
           G++   GA+V AAG D   W + G  ++V+       I+L K++    V+   YE PA
Sbjct: 429 GNLAPDGAVVKAAGVDESIWTFSGPARVVESQEEAVSIILDKQVQPGDVVVIRYEGPA 486


>sp|C4LJI1|ILVD_CORK4 Dihydroxy-acid dehydratase OS=Corynebacterium kroppenstedtii
           (strain DSM 44385 / CCUG 35717) GN=ilvD PE=3 SV=1
          Length = 616

 Score = 29.3 bits (64), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 26  GSVRRAGAIVSAAGRDSCHWNYRG------QLVDENMIVLRKRIHEMKVMERNYEPPA 77
           G++   GA++ AAG D   W++ G         D    +L K+I   +V+   YE PA
Sbjct: 429 GNLAEDGAVIKAAGIDESLWHFSGPAHVLESQEDAVNAILNKQIKPGEVVVIRYEGPA 486


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,418,891
Number of Sequences: 539616
Number of extensions: 1737606
Number of successful extensions: 4873
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4871
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)