Query 031927
Match_columns 150
No_of_seqs 46 out of 48
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jek_B ENV polyprotein; envelo 89.5 0.41 1.4E-05 29.6 3.6 25 78-103 1-25 (36)
2 2z2t_D Fusion inhibitor peptid 80.0 2.2 7.5E-05 25.4 3.6 25 78-103 1-25 (36)
3 3vie_B Sifuvirtide; 6-helix bu 75.8 3.6 0.00012 24.5 3.7 25 78-103 2-26 (37)
4 3vh7_B CP32M; 6-helix bundle, 73.7 2.8 9.7E-05 24.5 2.8 24 78-102 9-32 (34)
5 3vgx_D Envelope glycoprotein G 72.4 3.3 0.00011 23.8 2.8 24 78-102 7-30 (32)
6 3o3y_A Chimeric alpha+alpha/be 67.4 4.7 0.00016 24.5 2.8 25 78-103 3-27 (40)
7 1jq0_A GP41 envelope protein; 54.7 13 0.00045 26.1 3.7 26 76-102 44-69 (84)
8 2x7r_B Transmembrane protein G 54.6 14 0.00049 24.6 3.7 26 78-104 7-32 (63)
9 1df4_A HIV-1 envelope glycopro 49.2 16 0.00054 24.7 3.3 23 77-100 39-61 (68)
10 3nku_A DRRA, SIDM; posttransla 47.8 17 0.0006 29.1 3.8 41 56-101 39-79 (213)
11 3p30_A HIV-1 GP41; HIV, GP41, 43.1 24 0.00081 25.4 3.6 25 77-102 53-77 (96)
12 1env_A HIV-1 envelope protein 38.7 29 0.00098 26.2 3.6 27 76-103 83-109 (123)
13 1qbz_A Protein (SIV GP41 ectod 38.7 30 0.001 26.0 3.7 26 77-103 84-109 (123)
14 3t76_A VANU, transcriptional r 36.2 4.3 0.00015 27.6 -1.3 39 49-87 15-62 (88)
15 1v7m_V Thrombopoietin; FAB fra 30.8 1.5E+02 0.0051 23.4 6.6 49 58-106 11-75 (163)
16 3o3x_A GP41-5; helix bundle, v 29.8 47 0.0016 26.7 3.7 24 78-102 42-65 (198)
17 3nr1_A HD domain-containing pr 28.6 71 0.0024 24.3 4.4 49 56-113 116-164 (178)
18 3o3x_A GP41-5; helix bundle, v 26.6 61 0.0021 26.0 3.8 25 78-103 123-147 (198)
19 3s8q_A R-M controller protein; 24.0 58 0.002 20.1 2.6 38 48-85 1-47 (82)
20 1gp8_A Protein (scaffolding pr 22.0 63 0.0021 20.3 2.4 29 81-109 12-40 (40)
21 2cmr_A GP41, transmembrane gly 20.6 88 0.003 25.8 3.7 26 77-103 48-73 (226)
22 3arc_L Photosystem II reaction 20.3 67 0.0023 19.8 2.2 22 109-130 14-35 (37)
23 2cmr_A GP41, transmembrane gly 20.1 87 0.003 25.8 3.6 26 77-103 136-161 (226)
No 1
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=89.48 E-value=0.41 Score=29.64 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=19.6
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
.|++|||+-. +|.+.|..++.--|.
T Consensus 1 TWqqWereI~-~~t~nIy~LLeeAq~ 25 (36)
T 1jek_B 1 XWQQWEEEIE-QHEGNLSLLLREAAL 25 (36)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CccHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4999999987 888888888765443
No 2
>2z2t_D Fusion inhibitor peptide SC34EK; coiled-coil, viral protein/inhibitor complex; 2.10A {Synthetic}
Probab=80.04 E-value=2.2 Score=25.39 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=18.9
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
.||+|||+-. +|.+.+..++.--|.
T Consensus 1 TW~qWekei~-n~t~~Iy~lle~sq~ 25 (36)
T 2z2t_D 1 XWLEWDRKIE-EYTKKIEELIKKSQE 25 (36)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4999998875 888888887765543
No 3
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV, viral prote antiviral protein complex; 1.80A {Human immunodeficiency virus 1}
Probab=75.81 E-value=3.6 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=19.0
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
.||+|||+-- +|-+.+..++.--|.
T Consensus 2 TW~qWekei~-n~t~~Iy~lle~sq~ 26 (37)
T 3vie_B 2 SWETWEREIE-NYTRQIYRILEESQE 26 (37)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 5999999885 888888777665443
No 4
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=73.74 E-value=2.8 Score=24.48 Aligned_cols=24 Identities=38% Similarity=0.794 Sum_probs=18.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
.||+|||+-- +|-+.+..++.--|
T Consensus 9 TW~qWekei~-n~t~~Iy~lle~sq 32 (34)
T 3vh7_B 9 TWMEWEREIE-NYTKLIYKILEESQ 32 (34)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 4999999885 88888877765433
No 5
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=72.38 E-value=3.3 Score=23.85 Aligned_cols=24 Identities=33% Similarity=0.767 Sum_probs=18.2
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
.||+|||+-- +|-+.+..++.--|
T Consensus 7 TW~qw~kei~-n~t~~Iy~lle~sq 30 (32)
T 3vgx_D 7 TWMEWDREIN-NYTSLIHSLIEESQ 30 (32)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 4999999884 88888877665433
No 6
>3o3y_A Chimeric alpha+alpha/beta peptide based on the CH sequence of GP41; HIV fusion inhibitor, HIV GP41, mixed alpha-residue / beta-R backbone; HET: XPC B3E XCP; 1.35A {Synthetic} PDB: 3f4y_D 3g7a_B* 4dzu_B 4dzv_B* 3o42_B* 3o3z_B* 3f4z_A* 3f50_B* 3o43_B* 3o40_B*
Probab=67.43 E-value=4.7 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=19.1
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
.||+|||+-- +|-+.+..++.--|.
T Consensus 3 TW~qWekeI~-n~t~~Iy~lle~sq~ 27 (40)
T 3o3y_A 3 TWEAWDXAIA-XYAXRIEXLIXAAQX 27 (40)
T ss_dssp CTTTHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cHHHhhhhhh-hHHHHHHHHHHHHHH
Confidence 5999999885 888888777665443
No 7
>1jq0_A GP41 envelope protein; SIV, HIV-1, membrane fusion, six-helix bundle, trimer- hairpins, viral protein; 1.70A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1jpx_A
Probab=54.68 E-value=13 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=19.4
Q ss_pred CcchHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 76 PAEWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 76 P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
--.|++|||+-. +|...+..++.--|
T Consensus 44 nmTW~qWdrei~-nyt~~Iy~lle~sq 69 (84)
T 1jq0_A 44 RGGWQEWKRKVD-FLEENITALLEEAQ 69 (84)
T ss_dssp -CCHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 357999998774 88888887766544
No 8
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane anchored fusion protein, viral protein; 2.00A {Human immunodeficiency virus type 1LW12}
Probab=54.56 E-value=14 Score=24.60 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=20.9
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQTQ 104 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~~ 104 (150)
.||+|||+-. +|...+..++.--|.+
T Consensus 7 TW~qWekeI~-nyt~~Iy~LLe~sq~q 32 (63)
T 2x7r_B 7 DKMEWDREIN-NYTSLIHSLIEESQNQ 32 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HhhHHHHHHHHHHHhh
Confidence 6999998875 8998888887766643
No 9
>1df4_A HIV-1 envelope glycoprotein GP41; membrane fusion, protein-detergent interaction; 1.45A {Human immunodeficiency virus 1} SCOP: h.3.2.1 PDB: 1df5_A 1szt_A 2ot5_A 1i5y_A 1qr9_A 1k34_A 1k33_A 1i5x_A 1dlb_A 1qr8_A 3g7a_A* 3vie_A 2zzo_N 1aik_N
Probab=49.20 E-value=16 Score=24.72 Aligned_cols=23 Identities=30% Similarity=0.788 Sum_probs=18.3
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHH
Q 031927 77 AEWMEWEKQYYACYDEFICKLVGF 100 (150)
Q Consensus 77 ~~WmeWEK~~y~~Y~s~Vc~a~g~ 100 (150)
-.|++|||+-. +|...+..++.-
T Consensus 39 mTW~qwdkei~-nyt~~Iy~lle~ 61 (68)
T 1df4_A 39 GGWMEWDREIN-NYTSLIHSLIEE 61 (68)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HhhhHHHHHHHH
Confidence 68999998874 888888777653
No 10
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=47.78 E-value=17 Score=29.05 Aligned_cols=41 Identities=34% Similarity=0.508 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchHHHHHHHhhhhhHHHHHHHHHH
Q 031927 56 MIVLRKRIHEMKVMERNYEPPAEWMEWEKQYYACYDEFICKLVGFL 101 (150)
Q Consensus 56 MiVLRkRI~Emkm~E~~ye~P~~WmeWEK~~y~~Y~s~Vc~a~g~L 101 (150)
..-|-|-||| -|.|- -+-|.|||.-...-|..-+++++..|
T Consensus 39 lanlskiire---negne--vspwqewenglrqiykemiydafdal 79 (213)
T 3nku_A 39 LANLSKIIRE---NEGNE--VSPWQEWENGLRQIYKEMIYDAFDAL 79 (213)
T ss_dssp HHHHHHHHHH---TGGGC--SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHh---ccCCc--CCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554 33333 36699999988888888888877665
No 11
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system; 3.30A {Human immunodeficiency virus 1}
Probab=43.10 E-value=24 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.703 Sum_probs=17.8
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 77 AEWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 77 ~~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
-.||+|||+-- +|-+.+..++.--|
T Consensus 53 mTW~qWekeI~-nyt~~Iy~lLe~sq 77 (96)
T 3p30_A 53 GGWLQWDKEIS-NYTHIIYELIEESQ 77 (96)
T ss_dssp --CHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 67999999875 88888777665444
No 12
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=38.71 E-value=29 Score=26.24 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=18.6
Q ss_pred CcchHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 76 PAEWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 76 P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
--.|++|||+-. +|...+..++.--|.
T Consensus 83 NmTW~qWdreI~-nyt~~Iy~LLeeSQ~ 109 (123)
T 1env_A 83 NMTWMEWDREIN-NYTSLIHSLIEESQN 109 (123)
T ss_dssp ---CHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HhhHHHHHHHHHHHh
Confidence 357999998874 888888887665443
No 13
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide inhibitor, coiled coil, SIV envelope glycoprotein GP41; 1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B 2siv_A
Probab=38.70 E-value=30 Score=25.96 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=19.8
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 77 AEWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 77 ~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
-.||+|||+-. +|...|..++.--|.
T Consensus 84 mTW~qWdkeI~-nyt~~Iy~lleesq~ 109 (123)
T 1qbz_A 84 ETWQEWERKVD-FLEENITALLEEAQI 109 (123)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-hhhhHHHHHHHHHHh
Confidence 37999998774 888888887765443
No 14
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.24 E-value=4.3 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=28.1
Q ss_pred CccccchhHHHHHHHHHHHH---------hhhcCCCCcchHHHHHHHh
Q 031927 49 GQLVDENMIVLRKRIHEMKV---------MERNYEPPAEWMEWEKQYY 87 (150)
Q Consensus 49 G~LVDE~MiVLRkRI~Emkm---------~E~~ye~P~~WmeWEK~~y 87 (150)
+.+-|.||....+||+++|. +|.-.-.++....||+--.
T Consensus 15 ~~~~~~~M~i~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 15 ENLYFQGMRVSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CCCSCCCEEEECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred cchhhccccHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 67888999999999999885 2333345677777777533
No 15
>1v7m_V Thrombopoietin; FAB fragment, complex (cytokine/antibody), immune system/cytokine complex; 2.51A {Homo sapiens} SCOP: a.26.1.2 PDB: 1v7n_V
Probab=30.75 E-value=1.5e+02 Score=23.35 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhcC----------------CCCcchHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 031927 58 VLRKRIHEMKVMERNY----------------EPPAEWMEWEKQYYACYDEFICKLVGFLQTQLM 106 (150)
Q Consensus 58 VLRkRI~Emkm~E~~y----------------e~P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~~LM 106 (150)
||-|=|+|.|.+|..- ..--+.-+|||+--..=..+|-..+.+|+--.+
T Consensus 11 vL~~~I~EA~dae~~~~~C~~~c~Ls~~V~vP~t~vn~~~Wk~~~~~~kA~EV~~gL~LL~eav~ 75 (163)
T 1v7m_V 11 VLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVM 75 (163)
T ss_dssp HHHHHHHHHHHHHHGGGSSSSCCCCSSCEEEECCCCCCHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCceecCceeeeHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998732 123478999999988888999999999887776
No 16
>3o3x_A GP41-5; helix bundle, viral protein; HET: MPD IPA; 1.45A {Artificial gene} PDB: 3o40_A* 3o42_A* 3o43_A* 4dzu_A 4dzv_A* 3ma9_A 3mac_A 1f23_A 2kp8_A* 3vtp_D 1aik_C 2zzo_C 3f4y_A 3f50_A* 3o3z_A* 3aha_A 2z2t_A 3aha_B
Probab=29.85 E-value=47 Score=26.69 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=18.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
.||+|||+-- +|.+.+..++.--|
T Consensus 42 TW~qWekeI~-nyT~~Iy~LLeesQ 65 (198)
T 3o3x_A 42 GWMEWDREIN-NYTSLIHSLIEESQ 65 (198)
T ss_dssp THHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6999999874 78877777666544
No 17
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=28.58 E-value=71 Score=24.29 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCchHH
Q 031927 56 MIVLRKRIHEMKVMERNYEPPAEWMEWEKQYYACYDEFICKLVGFLQTQLMNSRPSFA 113 (150)
Q Consensus 56 MiVLRkRI~Emkm~E~~ye~P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~~LMntRP~vA 113 (150)
+|.|=-|+|-||.+.. .||.+|..-..+.|-..-..|++. |-++.|.|.
T Consensus 116 lIKLADRl~NmR~l~~--~~~~~~~~~r~~~Y~~~~~~v~~~-------l~~~~~~l~ 164 (178)
T 3nr1_A 116 LVKLADKLYNLRDLNR--CTPEGWSEHRVQEYFEWAAQVVKG-------LQGTNRQLE 164 (178)
T ss_dssp HHHHHHHHHHHHHHHH--CCCTTCCHHHHHHHHHHHHHHHHH-------HCSSCHHHH
T ss_pred HHHHHHHHHHHHHhhh--CCccccCHHHHHHHHHHHHHHHHH-------hccCCHHHH
Confidence 4567789999988876 489999544434444444455554 345666655
No 18
>3o3x_A GP41-5; helix bundle, viral protein; HET: MPD IPA; 1.45A {Artificial gene} PDB: 3o40_A* 3o42_A* 3o43_A* 4dzu_A 4dzv_A* 3ma9_A 3mac_A 1f23_A 2kp8_A* 3vtp_D 1aik_C 2zzo_C 3f4y_A 3f50_A* 3o3z_A* 3aha_A 2z2t_A 3aha_B
Probab=26.62 E-value=61 Score=26.03 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=18.7
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 78 EWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 78 ~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
.||+|||+-- +|-+.+..++.--|.
T Consensus 123 TWmqWekeI~-nyT~~Iy~LLeesQ~ 147 (198)
T 3o3x_A 123 GWMEWDREIN-NYTSLIHSLIEESQN 147 (198)
T ss_dssp GHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 7999999874 788777776665443
No 19
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.95 E-value=58 Score=20.09 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=21.1
Q ss_pred CCccccchhHHHHHHHHHHHHh---------hhcCCCCcchHHHHHH
Q 031927 48 RGQLVDENMIVLRKRIHEMKVM---------ERNYEPPAEWMEWEKQ 85 (150)
Q Consensus 48 gG~LVDE~MiVLRkRI~Emkm~---------E~~ye~P~~WmeWEK~ 85 (150)
||.+-++-+..+-.||+++|.. +...-.++....||+-
T Consensus 1 G~~m~~~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 1 GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 3455566667889999998852 3333345555555553
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=22.00 E-value=63 Score=20.29 Aligned_cols=29 Identities=21% Similarity=0.036 Sum_probs=24.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhcC
Q 031927 81 EWEKQYYACYDEFICKLVGFLQTQLMNSR 109 (150)
Q Consensus 81 eWEK~~y~~Y~s~Vc~a~g~LQ~~LMntR 109 (150)
.-|++-|.+|..+..+-+-.|..+|-+.|
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL~~lR 40 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKLKGIR 40 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 46889999999999999999999987655
No 21
>2cmr_A GP41, transmembrane glycoprotein; immune system, immunoglobulin complex, neutralization, immunoglobulin, envelope protein, HIV; 2.0A {Human immunodeficiency virus 1} PDB: 2xra_A 3cp1_A 3cyo_A
Probab=20.63 E-value=88 Score=25.80 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=19.9
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 77 AEWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 77 ~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
-.|++|||+-. +|...+..++.--|.
T Consensus 48 mTW~qWdreI~-nyt~~Iy~LLeesQ~ 73 (226)
T 2cmr_A 48 TTWMEWDREIN-NYTSLIHSLIEESQN 73 (226)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CChHHhhhhHH-hcccHHHHHHHHHHh
Confidence 47999998874 888888887776553
No 22
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.31 E-value=67 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.6
Q ss_pred CchHHHHHHHHHHHhhchHHHH
Q 031927 109 RPSFALGMLAVVAMSVPASTFM 130 (150)
Q Consensus 109 RP~vAlg~~all~lSVP~S~~~ 130 (150)
|-|+-.|++.++.++|+.|.-+
T Consensus 14 RTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhc
Confidence 6788999999999999888654
No 23
>2cmr_A GP41, transmembrane glycoprotein; immune system, immunoglobulin complex, neutralization, immunoglobulin, envelope protein, HIV; 2.0A {Human immunodeficiency virus 1} PDB: 2xra_A 3cp1_A 3cyo_A
Probab=20.08 E-value=87 Score=25.83 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=19.0
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHH
Q 031927 77 AEWMEWEKQYYACYDEFICKLVGFLQT 103 (150)
Q Consensus 77 ~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~ 103 (150)
-.|++|||+-. +|...+..++.--|.
T Consensus 136 mTW~qWdreI~-nyt~~Iy~lLeesQ~ 161 (226)
T 2cmr_A 136 TTWMEWDREIN-NYTSLIHSLIEESQN 161 (226)
T ss_dssp --CHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-hhhhHHHHHHHHHHh
Confidence 48999998875 888888887766553
Done!