Query 031927
Match_columns 150
No_of_seqs 46 out of 48
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 11:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031927.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031927hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v7mv_ a.26.1.2 (V:) Thrombop 33.7 61 0.0044 23.3 6.6 56 58-113 5-76 (145)
2 d1y7ya1 a.35.1.3 (A:5-73) Rest 33.2 10 0.00074 22.5 1.9 35 53-87 4-47 (69)
3 d1f46a_ d.129.4.1 (A:) Cell-di 31.0 13 0.00092 25.7 2.3 22 47-68 107-136 (139)
4 d1w74a_ b.62.1.1 (A:) Peptidyl 28.6 7.2 0.00052 26.9 0.6 16 49-65 134-150 (171)
5 d2croa_ a.35.1.2 (A:) cro 434 23.1 11 0.00079 22.1 0.6 32 56-87 1-41 (65)
6 d2iu5a2 a.121.1.1 (A:72-180) T 19.3 24 0.0017 24.1 1.8 22 75-96 55-77 (109)
7 d1ra6a_ e.8.1.4 (A:) Viral RNA 19.2 25 0.0018 28.2 2.2 30 59-90 432-461 (461)
8 d2vkva2 a.121.1.1 (A:68-205) T 18.7 57 0.0042 20.8 3.7 29 74-102 3-31 (138)
9 d2vvpa1 c.121.1.1 (A:3-158) Al 17.4 30 0.0022 24.6 2.1 18 60-77 137-154 (156)
10 d1h6ga2 a.24.9.1 (A:508-631) a 16.5 1.2E+02 0.0089 20.7 5.2 47 49-107 28-78 (124)
No 1
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.74 E-value=61 Score=23.28 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhcCC----------------CCcchHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCchHH
Q 031927 58 VLRKRIHEMKVMERNYE----------------PPAEWMEWEKQYYACYDEFICKLVGFLQTQLMNSRPSFA 113 (150)
Q Consensus 58 VLRkRI~Emkm~E~~ye----------------~P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~~LMntRP~vA 113 (150)
||-|=|+|.|.+|..-. .--+.-+||++--..=..+|-.++.+|+--.+..|..++
T Consensus 5 VL~~~i~EA~dae~~~~~C~e~~~L~~~v~vP~t~v~f~~Wk~~~~~~ka~EV~~gL~LL~eav~~aq~~l~ 76 (145)
T d1v7mv_ 5 VLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLG 76 (145)
T ss_dssp HHHHHHHHHHHHHHGGGSSSSCCCCSSCEEEECCCCCCHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCceeeCcceeeHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 78899999999987331 234789999998777778888888888877777777665
No 2
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=33.24 E-value=10 Score=22.51 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHHH---------hhhcCCCCcchHHHHHHHh
Q 031927 53 DENMIVLRKRIHEMKV---------MERNYEPPAEWMEWEKQYY 87 (150)
Q Consensus 53 DE~MiVLRkRI~Emkm---------~E~~ye~P~~WmeWEK~~y 87 (150)
+.+++.+-+||+++|. +|...-.++.+..||+--.
T Consensus 4 ~~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~ 47 (69)
T d1y7ya1 4 YADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHhHhCCCHHHHHHHHCCCC
Confidence 4578889999999995 4555567788888888544
No 3
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.99 E-value=13 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.2
Q ss_pred CCCccccchh--------HHHHHHHHHHHH
Q 031927 47 YRGQLVDENM--------IVLRKRIHEMKV 68 (150)
Q Consensus 47 ~gG~LVDE~M--------iVLRkRI~Emkm 68 (150)
-||.|+||+. --+|.||+|.+.
T Consensus 107 l~g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 107 VGGVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HTCEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6789999876 356777777764
No 4
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.57 E-value=7.2 Score=26.88 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.2
Q ss_pred Ccccc-chhHHHHHHHHH
Q 031927 49 GQLVD-ENMIVLRKRIHE 65 (150)
Q Consensus 49 G~LVD-E~MiVLRkRI~E 65 (150)
|++|| |||-||++ |.+
T Consensus 134 G~Vv~geGmdvl~~-I~~ 150 (171)
T d1w74a_ 134 GEVIDAESQRVVEA-ISK 150 (171)
T ss_dssp EEECSHHHHHHHHH-HHT
T ss_pred EEEeccccHHHHHH-HHc
Confidence 89998 99999986 544
No 5
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=23.12 E-value=11 Score=22.11 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHH---------hhhcCCCCcchHHHHHHHh
Q 031927 56 MIVLRKRIHEMKV---------MERNYEPPAEWMEWEKQYY 87 (150)
Q Consensus 56 MiVLRkRI~Emkm---------~E~~ye~P~~WmeWEK~~y 87 (150)
|-.+..||++.|. +|.---.++.+..||+.-.
T Consensus 1 M~~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~ 41 (65)
T d2croa_ 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT 41 (65)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHCcCHhHHHHHHCCCC
Confidence 4457889999885 4555567888888887544
No 6
>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=19.29 E-value=24 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=17.6
Q ss_pred CCcchHHHHHHHhhhhhH-HHHH
Q 031927 75 PPAEWMEWEKQYYACYDE-FICK 96 (150)
Q Consensus 75 ~P~~WmeWEK~~y~~Y~s-~Vc~ 96 (150)
.--+|.+.||.|-+.|++ .+|.
T Consensus 55 sdyhwsdleksficrynaaaica 77 (109)
T d2iu5a2 55 SDYHWSDLEKSFICRYNAAAICA 77 (109)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhhhhHhhhcchHHHhh
Confidence 346899999999999974 5564
No 7
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=19.25 E-value=25 Score=28.23 Aligned_cols=30 Identities=10% Similarity=0.359 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhcCCCCcchHHHHHHHhhhh
Q 031927 59 LRKRIHEMKVMERNYEPPAEWMEWEKQYYACY 90 (150)
Q Consensus 59 LRkRI~Emkm~E~~ye~P~~WmeWEK~~y~~Y 90 (150)
++.+|++.. .+..++.|+ |.++++||+..|
T Consensus 432 ~~~~i~~~~-~~~~~~~p~-y~~~~~rw~~~f 461 (461)
T d1ra6a_ 432 FLAKIRSVP-IGRALDLPE-YSTLYDRWLDSF 461 (461)
T ss_dssp HHHHHTTSH-HHHTSCCCC-HHHHHHHHHHHC
T ss_pred HHHHHHHHH-HhCCCCCCC-HHHHHHHHHhcC
Confidence 344444442 244556664 888888888654
No 8
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=18.73 E-value=57 Score=20.81 Aligned_cols=29 Identities=3% Similarity=0.145 Sum_probs=21.2
Q ss_pred CCCcchHHHHHHHhhhhhHHHHHHHHHHH
Q 031927 74 EPPAEWMEWEKQYYACYDEFICKLVGFLQ 102 (150)
Q Consensus 74 e~P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ 102 (150)
+|..+|-+|=++|...|.+-..+==++.+
T Consensus 3 ~p~~~Wr~~lr~~a~~~r~~~~~hP~~a~ 31 (138)
T d2vkva2 3 AAGESWQSFLRNNAMSFRRALLRYRDGAK 31 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCccHHH
Confidence 45678999999999988876655334444
No 9
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.38 E-value=30 Score=24.59 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhcCCCCc
Q 031927 60 RKRIHEMKVMERNYEPPA 77 (150)
Q Consensus 60 RkRI~Emkm~E~~ye~P~ 77 (150)
-+||..|...|+.+|.|+
T Consensus 137 ~~Rv~ki~~~e~~~~~~~ 154 (156)
T d2vvpa1 137 QRRIDILAEYERTHEAPP 154 (156)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 589999999999998875
No 10
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.48 E-value=1.2e+02 Score=20.72 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=31.0
Q ss_pred CccccchhHHHHH---HHHHHHHhhh-cCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 031927 49 GQLVDENMIVLRK---RIHEMKVMER-NYEPPAEWMEWEKQYYACYDEFICKLVGFLQTQLMN 107 (150)
Q Consensus 49 G~LVDE~MiVLRk---RI~Emkm~E~-~ye~P~~WmeWEK~~y~~Y~s~Vc~a~g~LQ~~LMn 107 (150)
...+|++=--.++ ||-.+=..|- |||+| .|...|-+++..|+...|-
T Consensus 28 ~~~l~~~a~~I~~ra~RV~~v~~~E~dNsEd~------------~y~~~V~~av~~L~~~i~P 78 (124)
T d1h6ga2 28 VDGLDRTAGAIRGRAARVIHVVTSEMDNYEPG------------VYTEKVLEATKLLSNTVMP 78 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSS------------HHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc------------hHHHHHHHHHHHHHHHHHH
Confidence 3445544333444 4444444454 88887 6899999999999988763
Done!