BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031930
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
           Dehydrogenase From Thiobacillus Ferrooxidans With 3-
           Isopropylmalate
 pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
           Dehydrogenase From Thiobacillus Ferrooxidans With 3-
           Isopropylmalate
          Length = 358

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 118 RPWRDVKTKIKKDYPTVQYT 137
           R WR+V T++ +DYP V+ +
Sbjct: 198 RLWREVVTEVARDYPDVRLS 217


>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae
          Length = 574

 Score = 26.6 bits (57), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 73  LILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
           L+  K+F+G + T+++    +++Q+T     NL+ M  + + V+G  W
Sbjct: 482 LVPFKVFEGNRPTNSI----LVKQITPRTLGNLIAMYEHKIFVQGVIW 525


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,778,284
Number of Sequences: 62578
Number of extensions: 125655
Number of successful extensions: 297
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 4
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)